Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53622.t1 | XP_013467179.1 | 92.9 | 365 | 13 | 1 | 1 | 352 | 1 | 365 | 1.40E-165 | 592.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53622.t1 | Q9T0H9 | 69.9 | 336 | 99 | 2 | 18 | 352 | 25 | 359 | 4.2e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53622.t1 | A0A072VSW1 | 92.9 | 365 | 13 | 1 | 1 | 352 | 1 | 365 | 9.8e-166 | 592.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene53622 | 0.809267 | 2.06E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene53622 | 0.878753 | 2.18E-69 | -1.69E-46 |
| MS.gene049491 | MS.gene53622 | 0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene53622 | 0.839358 | 1.66E-57 | -1.69E-46 |
| MS.gene049805 | MS.gene53622 | 0.844402 | 7.73E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene53622 | 0.806337 | 8.64E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene53622 | 0.809574 | 1.77E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene53622 | 0.825805 | 3.84E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene53622 | 0.821264 | 4.43E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene53622 | 0.809301 | 2.03E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene53622 | 0.801454 | 8.93E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene53622 | 0.818854 | 1.58E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene53622 | 0.822884 | 1.86E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene53622 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene53622 | 0.836629 | 8.37E-57 | -1.69E-46 |
| MS.gene050950 | MS.gene53622 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene53622 | 0.816892 | 4.38E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene53622 | 0.827066 | 1.92E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene53622 | 0.821483 | 3.94E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene53622 | 0.813715 | 2.22E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene53622 | 0.831119 | 2.00E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene53622 | 0.821464 | 3.98E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene53622 | 0.80465 | 1.95E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene53622 | 0.814377 | 1.59E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene53622 | 0.81195 | 5.42E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene53622 | 0.805028 | 1.63E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene53622 | 0.875135 | 3.91E-68 | -1.69E-46 |
| MS.gene052322 | MS.gene53622 | 0.816424 | 5.57E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene53622 | 0.827255 | 1.73E-54 | -1.69E-46 |
| MS.gene052379 | MS.gene53622 | 0.83083 | 2.35E-55 | -1.69E-46 |
| MS.gene052421 | MS.gene53622 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene53622 | 0.83106 | 2.07E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene53622 | 0.845329 | 4.35E-59 | -1.69E-46 |
| MS.gene052485 | MS.gene53622 | 0.823107 | 1.65E-53 | -1.69E-46 |
| MS.gene052615 | MS.gene53622 | 0.819579 | 1.08E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene53622 | 0.839124 | 1.91E-57 | -1.69E-46 |
| MS.gene052872 | MS.gene53622 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene053103 | MS.gene53622 | 0.873033 | 2.01E-67 | -1.69E-46 |
| MS.gene053104 | MS.gene53622 | 0.861909 | 7.37E-64 | -1.69E-46 |
| MS.gene053107 | MS.gene53622 | 0.823717 | 1.19E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene53622 | 0.869094 | 4.01E-66 | -1.69E-46 |
| MS.gene053384 | MS.gene53622 | 0.816379 | 5.70E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene53622 | 0.823383 | 1.43E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene53622 | 0.813343 | 2.69E-51 | -1.69E-46 |
| MS.gene053579 | MS.gene53622 | 0.809012 | 2.34E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene53622 | 0.810011 | 1.42E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene53622 | 0.809381 | 1.95E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene53622 | 0.820969 | 5.18E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene53622 | 0.809947 | 1.47E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene53622 | 0.829467 | 5.06E-55 | -1.69E-46 |
| MS.gene054803 | MS.gene53622 | 0.826971 | 2.02E-54 | -1.69E-46 |
| MS.gene054804 | MS.gene53622 | 0.829191 | 5.91E-55 | -1.69E-46 |
| MS.gene054955 | MS.gene53622 | 0.819126 | 1.37E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene53622 | 0.813772 | 2.16E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene53622 | 0.838835 | 2.27E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene53622 | 0.828831 | 7.22E-55 | -1.69E-46 |
| MS.gene055390 | MS.gene53622 | 0.811033 | 8.57E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene53622 | 0.832533 | 8.96E-56 | -1.69E-46 |
| MS.gene055412 | MS.gene53622 | 0.846229 | 2.48E-59 | -1.69E-46 |
| MS.gene055499 | MS.gene53622 | 0.806771 | 7.00E-50 | -1.69E-46 |
| MS.gene055605 | MS.gene53622 | 0.80651 | 7.94E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene53622 | 0.808395 | 3.16E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene53622 | 0.816656 | 4.94E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene53622 | 0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene055896 | MS.gene53622 | 0.820193 | 7.81E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene53622 | 0.831215 | 1.89E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene53622 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene53622 | 0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene53622 | 0.800528 | 1.38E-48 | -1.69E-46 |
| MS.gene056549 | MS.gene53622 | 0.820484 | 6.70E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene53622 | 0.835824 | 1.34E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene53622 | 0.820501 | 6.64E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene53622 | 0.854745 | 1.00E-61 | -1.69E-46 |
| MS.gene057011 | MS.gene53622 | 0.876795 | 1.05E-68 | -1.69E-46 |
| MS.gene057123 | MS.gene53622 | 0.810692 | 1.02E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene53622 | 0.832384 | 9.75E-56 | -1.69E-46 |
| MS.gene057146 | MS.gene53622 | 0.823407 | 1.41E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene53622 | 0.820033 | 8.49E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene53622 | 0.827031 | 1.96E-54 | -1.69E-46 |
| MS.gene058006 | MS.gene53622 | 0.836505 | 9.00E-57 | -1.69E-46 |
| MS.gene058019 | MS.gene53622 | 0.809048 | 2.29E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene53622 | 0.809937 | 1.48E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene53622 | 0.841067 | 5.95E-58 | -1.69E-46 |
| MS.gene058323 | MS.gene53622 | 0.825718 | 4.02E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene53622 | 0.837192 | 6.01E-57 | -1.69E-46 |
| MS.gene058928 | MS.gene53622 | 0.833882 | 4.13E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene53622 | 0.825769 | 3.91E-54 | -1.69E-46 |
| MS.gene059326 | MS.gene53622 | 0.828667 | 7.92E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene53622 | 0.820472 | 6.74E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene53622 | 0.873901 | 1.03E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene53622 | 0.82414 | 9.49E-54 | -1.69E-46 |
| MS.gene05959 | MS.gene53622 | 0.809329 | 2.00E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene53622 | 0.843244 | 1.58E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene53622 | 0.830183 | 3.39E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene53622 | 0.819908 | 9.07E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene53622 | 0.820054 | 8.40E-53 | -1.69E-46 |
| MS.gene059708 | MS.gene53622 | 0.835358 | 1.76E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene53622 | 0.836971 | 6.84E-57 | -1.69E-46 |
| MS.gene059902 | MS.gene53622 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene53622 | 0.894841 | 1.69E-75 | -1.69E-46 |
| MS.gene060193 | MS.gene53622 | 0.829574 | 4.77E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene53622 | 0.811961 | 5.39E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene53622 | 0.809285 | 2.04E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene53622 | 0.846719 | 1.82E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene53622 | 0.879659 | 1.04E-69 | -1.69E-46 |
| MS.gene060837 | MS.gene53622 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene53622 | 0.803315 | 3.70E-49 | -1.69E-46 |
| MS.gene060986 | MS.gene53622 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene53622 | 0.837403 | 5.31E-57 | -1.69E-46 |
| MS.gene061051 | MS.gene53622 | -0.826764 | 2.27E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene53622 | 0.81941 | 1.18E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene53622 | 0.851927 | 6.45E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53622.t1 | MTR_1g046730 | 94.521 | 365 | 7 | 1 | 1 | 352 | 1 | 365 | 0.0 | 680 |
| MS.gene53622.t1 | MTR_5g009810 | 45.740 | 223 | 105 | 4 | 136 | 351 | 136 | 349 | 7.64e-48 | 165 |
| MS.gene53622.t1 | MTR_7g079850 | 40.758 | 211 | 118 | 2 | 139 | 349 | 76 | 279 | 8.14e-41 | 145 |
| MS.gene53622.t1 | MTR_1g111390 | 39.556 | 225 | 114 | 5 | 138 | 348 | 7 | 223 | 3.98e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53622.t1 | AT4G13590 | 70.448 | 335 | 99 | 0 | 18 | 352 | 25 | 359 | 8.95e-156 | 441 |
| MS.gene53622.t1 | AT4G13590 | 69.851 | 335 | 101 | 0 | 18 | 352 | 25 | 359 | 3.41e-154 | 437 |
| MS.gene53622.t1 | AT1G64150 | 48.624 | 218 | 95 | 5 | 137 | 347 | 157 | 364 | 4.17e-46 | 161 |
| MS.gene53622.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 131 | 349 | 74 | 289 | 6.72e-39 | 140 |
| MS.gene53622.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 131 | 349 | 74 | 289 | 6.72e-39 | 140 |
| MS.gene53622.t1 | AT1G25520 | 39.474 | 228 | 111 | 6 | 138 | 348 | 7 | 224 | 6.14e-36 | 130 |
| MS.gene53622.t1 | AT1G68650 | 39.035 | 228 | 108 | 5 | 138 | 347 | 7 | 221 | 4.61e-34 | 125 |
Find 72 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCATCAGGTTGGTTATT+TGG | 0.099863 | 1.2:+29462134 | MS.gene53622:intron |
| TTAATATTTGTTTCTGAAAT+TGG | 0.151448 | 1.2:+29455278 | MS.gene53622:CDS |
| CAAATCCTCTTGAGATTCTT+TGG | 0.174329 | 1.2:+29461230 | MS.gene53622:CDS |
| AGTAAGATGCAGACAGAAAT+TGG | 0.222922 | 1.2:+29454716 | MS.gene53622:intron |
| TTTCATCAGGTTGGTTATTT+GGG | 0.251861 | 1.2:+29462135 | MS.gene53622:intron |
| TCAATCCTATCTGTTGTAAT+TGG | 0.287895 | 1.2:+29459537 | MS.gene53622:CDS |
| AATTTCTGTCAGAGACATTC+TGG | 0.313755 | 1.2:-29454830 | None:intergenic |
| CCTATTCGAACTTACTTGTT+TGG | 0.322104 | 1.2:-29459590 | None:intergenic |
| CTTGCAGCAATTGCAAAATC+AGG | 0.333816 | 1.2:+29455236 | MS.gene53622:CDS |
| AATTGCGCTCGCAGCTGCTC+AGG | 0.354195 | 1.2:+29461616 | MS.gene53622:CDS |
| GTAATATTTACAGTCTCCTT+GGG | 0.358584 | 1.2:+29461950 | MS.gene53622:intron |
| AGTAATATTTACAGTCTCCT+TGG | 0.392525 | 1.2:+29461949 | MS.gene53622:intron |
| TCAGCTAGTTCATCAAGTTC+AGG | 0.393960 | 1.2:-29460844 | None:intergenic |
| CTGCATATTCTCCGATTGGC+AGG | 0.397092 | 1.2:-29460729 | None:intergenic |
| CAACGCTAATATTTGATGCT+TGG | 0.397920 | 1.2:-29454770 | None:intergenic |
| AACGCTAATATTTGATGCTT+GGG | 0.399294 | 1.2:-29454769 | None:intergenic |
| ATTCTTTATTGCTGCACTCT+TGG | 0.409806 | 1.2:+29458414 | MS.gene53622:CDS |
| GTAAGATGCAGACAGAAATT+GGG | 0.414311 | 1.2:+29454717 | MS.gene53622:intron |
| GCAACATGCATTGCTATTGT+TGG | 0.419667 | 1.2:+29462008 | MS.gene53622:CDS |
| ATCAAATATTAGCGTTGGAC+CGG | 0.424620 | 1.2:+29454776 | MS.gene53622:CDS |
| CAGGTTGGTTATTTGGGTGG+AGG | 0.435131 | 1.2:+29462141 | MS.gene53622:intron |
| CTTGGGCTCGAATTGTTTCA+CGG | 0.438405 | 1.2:-29454752 | None:intergenic |
| GTTAGGATCAATGGGTGCTC+TGG | 0.445738 | 1.2:+29459506 | MS.gene53622:CDS |
| GTGGCAAGTGGAGCTATTGC+TGG | 0.467080 | 1.2:+29461975 | MS.gene53622:CDS |
| AGAGGAGCTTGTGAAAGAAA+AGG | 0.481283 | 1.2:+29460870 | MS.gene53622:CDS |
| AGGTTGGTTATTTGGGTGGA+GGG | 0.484602 | 1.2:+29462142 | MS.gene53622:intron |
| TCAAATATTAGCGTTGGACC+GGG | 0.489113 | 1.2:+29454777 | MS.gene53622:CDS |
| TTCAATATTGCAAATGAAAG+AGG | 0.489232 | 1.2:-29454190 | None:intergenic |
| ACAGAAATTGGGGTTGAGCT+TGG | 0.489408 | 1.2:+29454728 | MS.gene53622:CDS |
| CATCAGGTTGGTTATTTGGG+TGG | 0.492256 | 1.2:+29462138 | MS.gene53622:intron |
| TTACTTGTTTGGAACTGAGC+AGG | 0.492594 | 1.2:-29459579 | None:intergenic |
| TCTCCTTGGGGTGTGGCAAG+TGG | 0.497420 | 1.2:+29461963 | MS.gene53622:CDS |
| CATACACCCTTGATTCCAAA+GGG | 0.511728 | 1.2:+29454160 | MS.gene53622:CDS |
| CTACCTACAGCCCTGCCAAT+CGG | 0.512958 | 1.2:+29460718 | MS.gene53622:intron |
| TTTACAGTCTCCTTGGGGTG+TGG | 0.522314 | 1.2:+29461956 | MS.gene53622:intron |
| AAACTTACATGGAGATAAAG+TGG | 0.528431 | 1.2:-29454248 | None:intergenic |
| AAAGCTATAGAGACAGGATA+AGG | 0.529515 | 1.2:-29455146 | None:intergenic |
| TAAAATCAATAAAAGACGCA+TGG | 0.530108 | 1.2:+29460779 | MS.gene53622:CDS |
| ACATGCATTGCTATTGTTGG+AGG | 0.530842 | 1.2:+29462011 | MS.gene53622:CDS |
| TTTCTGAAATGTAGTTAGCA+AGG | 0.537790 | 1.2:-29462040 | None:intergenic |
| CGCATGGGATCTTCCTTCAA+AGG | 0.539180 | 1.2:+29460795 | MS.gene53622:CDS |
| AACACAAAAGCTATAGAGAC+AGG | 0.541473 | 1.2:-29455152 | None:intergenic |
| TTGGGCTCGAATTGTTTCAC+GGG | 0.545227 | 1.2:-29454751 | None:intergenic |
| CAAGCATCAAATATTAGCGT+TGG | 0.547870 | 1.2:+29454771 | MS.gene53622:CDS |
| CTTGGCAATGCAATATGAGA+AGG | 0.551638 | 1.2:+29458432 | MS.gene53622:CDS |
| TCACTAATAGCGTTTGTGAA+AGG | 0.557958 | 1.2:+29455197 | MS.gene53622:CDS |
| AAATATTAGCGTTGGACCGG+GGG | 0.559963 | 1.2:+29454779 | MS.gene53622:CDS |
| ACTGCTGCATATTCTCCGAT+TGG | 0.561503 | 1.2:-29460733 | None:intergenic |
| TGCATATTCTCCGATTGGCA+GGG | 0.562749 | 1.2:-29460728 | None:intergenic |
| AAAATCAATAAAAGACGCAT+GGG | 0.563865 | 1.2:+29460780 | MS.gene53622:CDS |
| AATATTGCAAATGAAAGAGG+AGG | 0.573313 | 1.2:-29454187 | None:intergenic |
| TGTTTCTGAAATTGGTGACA+AGG | 0.576306 | 1.2:+29455286 | MS.gene53622:CDS |
| GCTCCACTTGCCACACCCCA+AGG | 0.586539 | 1.2:-29461966 | None:intergenic |
| TCATACACCCTTGATTCCAA+AGG | 0.588292 | 1.2:+29454159 | MS.gene53622:CDS |
| CAAATATTAGCGTTGGACCG+GGG | 0.588654 | 1.2:+29454778 | MS.gene53622:CDS |
| CAGGTACTGATTGAAAGATA+CGG | 0.589089 | 1.2:-29459560 | None:intergenic |
| CAATTGTTGCAAGCATTGAA+CGG | 0.594096 | 1.2:-29461598 | None:intergenic |
| AATGCAATATGAGAAGGGAT+TGG | 0.594404 | 1.2:+29458438 | MS.gene53622:CDS |
| GAGACAGGATAAGGAATCTG+AGG | 0.595160 | 1.2:-29455137 | None:intergenic |
| CTAATAGCGTTTGTGAAAGG+AGG | 0.597957 | 1.2:+29455200 | MS.gene53622:CDS |
| TTATTGCTTTCATAATCCCC+CGG | 0.603211 | 1.2:-29454795 | None:intergenic |
| TACGGCCAATTACAACAGAT+AGG | 0.609783 | 1.2:-29459542 | None:intergenic |
| TAAGATGCAGACAGAAATTG+GGG | 0.617935 | 1.2:+29454718 | MS.gene53622:CDS |
| GATTTCCAAAGAATCTCAAG+AGG | 0.623224 | 1.2:-29461235 | None:intergenic |
| GTAGAGAAATAAGTACAAGA+TGG | 0.624500 | 1.2:-29454220 | None:intergenic |
| TTGGCAATGCAATATGAGAA+GGG | 0.625006 | 1.2:+29458433 | MS.gene53622:CDS |
| GACTGATTTGCCTAGGAATG+GGG | 0.632644 | 1.2:+29461572 | MS.gene53622:intron |
| ATTGCTGCAAGAACTGATGA+AGG | 0.633169 | 1.2:-29455224 | None:intergenic |
| TGATGAACTAGCTGAAGCAG+AGG | 0.638039 | 1.2:+29460852 | MS.gene53622:CDS |
| ACAGGATAAGGAATCTGAGG+AGG | 0.640171 | 1.2:-29455134 | None:intergenic |
| TAATATTTACAGTCTCCTTG+GGG | 0.648664 | 1.2:+29461951 | MS.gene53622:intron |
| AATATCTTCAGGCATCGCAA+CGG | 0.661954 | 1.2:+29461203 | MS.gene53622:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 29454142 | 29462209 | 29454142 | ID=MS.gene53622 |
| chr1.2 | mRNA | 29454142 | 29462209 | 29454142 | ID=MS.gene53622.t1;Parent=MS.gene53622 |
| chr1.2 | exon | 29454142 | 29454262 | 29454142 | ID=MS.gene53622.t1.exon1;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29454142 | 29454262 | 29454142 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29454718 | 29454877 | 29454718 | ID=MS.gene53622.t1.exon2;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29454718 | 29454877 | 29454718 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29455127 | 29455307 | 29455127 | ID=MS.gene53622.t1.exon3;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29455127 | 29455307 | 29455127 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29458412 | 29458459 | 29458412 | ID=MS.gene53622.t1.exon4;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29458412 | 29458459 | 29458412 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29459501 | 29459597 | 29459501 | ID=MS.gene53622.t1.exon5;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29459501 | 29459597 | 29459501 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29460728 | 29460891 | 29460728 | ID=MS.gene53622.t1.exon6;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29460728 | 29460891 | 29460728 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29461214 | 29461279 | 29461214 | ID=MS.gene53622.t1.exon7;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29461214 | 29461279 | 29461214 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29461587 | 29461637 | 29461587 | ID=MS.gene53622.t1.exon8;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29461587 | 29461637 | 29461587 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29461963 | 29462067 | 29461963 | ID=MS.gene53622.t1.exon9;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29461963 | 29462067 | 29461963 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| chr1.2 | exon | 29462144 | 29462209 | 29462144 | ID=MS.gene53622.t1.exon10;Parent=MS.gene53622.t1 |
| chr1.2 | CDS | 29462144 | 29462209 | 29462144 | ID=cds.MS.gene53622.t1;Parent=MS.gene53622.t1 |
| Gene Sequence |
| Protein sequence |
