AlfalfaGEDB | MS.gene71450

M. sativa cultivar XinJiangDaYe / MS.gene71450

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71450.t1	XP_003590788.2	95.7	561	24	0	1	561	1	561	7.10E-302	1045.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71450.t1	G7I3Y5	95.7	561	24	0	1	561	1	561	5.1e-302	1045.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene71450	0.828197	1.03E-54	-1.69E-46
MS.gene049151	MS.gene71450	0.804991	1.66E-49	-1.69E-46
MS.gene049153	MS.gene71450	0.829887	4.00E-55	-1.69E-46
MS.gene049356	MS.gene71450	0.80591	1.06E-49	-1.69E-46
MS.gene049378	MS.gene71450	0.842483	2.52E-58	-1.69E-46
MS.gene049758	MS.gene71450	0.813286	2.76E-51	-1.69E-46
MS.gene049910	MS.gene71450	0.833312	5.73E-56	-1.69E-46
MS.gene050128	MS.gene71450	0.813448	2.55E-51	-1.69E-46
MS.gene050168	MS.gene71450	0.802062	6.70E-49	-1.69E-46
MS.gene050226	MS.gene71450	0.819235	1.29E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71450.t1	MTR_1g075280	95.722	561	24	0	1	561	1	561	0.0	1116
MS.gene71450.t1	MTR_1g075280	88.770	561	24	1	1	561	1	522	0.0	1018
MS.gene71450.t1	MTR_5g007040	34.983	303	134	8	207	462	94	380	3.81e-32	132
MS.gene71450.t1	MTR_5g007040	49.038	104	47	1	1	104	9	106	2.16e-22	102
MS.gene71450.t1	MTR_6g046940	28.261	414	204	16	207	556	94	478	2.61e-21	98.6
MS.gene71450.t1	MTR_6g046940	46.154	104	50	1	1	104	9	106	1.22e-19	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 92 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGCTTCTTCTTCCAT+TGG	0.453603	1.3:-53877411	MS.gene71450:CDS
AACAAATCTTCTACTATTTC+AGG	0.180626	1.3:-53878851	MS.gene71450:intron
AAGAAAATGAAACCAAAGAC+TGG	0.532411	1.3:-53879731	None:intergenic
AAGAAGAACACCGTCTGCAG+AGG	0.634486	1.3:+53877665	None:intergenic
AAGAGTGACGTTTCTTCGAC+AGG	0.500026	1.3:-53879392	MS.gene71450:CDS
AATATCTGAGATAATGGAAG+AGG	0.514653	1.3:-53878876	MS.gene71450:CDS
AATTTACAAGTTCATCAAGA+TGG	0.458602	1.3:-53878423	MS.gene71450:CDS
ACAAGAATGTCTCATCAAGT+AGG	0.578856	1.3:-53877706	MS.gene71450:CDS
ACAATATGCTGATAACCAAT+TGG	0.476134	1.3:-53877472	MS.gene71450:CDS
ACAATATGTGGACTGAAAAT+TGG	0.244513	1.3:+53877750	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATATGCTGATAACCAAT+TGG	-	chr1.3:53879513-53879532	MS.gene71450:CDS	30.0%
ACATCATGATTGAGCAAAAA+AGG	+	chr1.3:53877942-53877961	None:intergenic	30.0%
AGGAGAATTTAATGAACCAT+TGG	-	chr1.3:53878039-53878058	MS.gene71450:CDS	30.0%
CAATTAACACTGCATATCAA+AGG	-	chr1.3:53878292-53878311	MS.gene71450:CDS	30.0%
CTTTGATATGCAGTGTTAAT+TGG	+	chr1.3:53878294-53878313	None:intergenic	30.0%
GAACACATGATTGAAGATAA+AGG	-	chr1.3:53878700-53878719	MS.gene71450:intron	30.0%
GATATCAAATATGTTCCAAG+AGG	+	chr1.3:53878733-53878752	None:intergenic	30.0%
GGAACATATTTGATATCATC+CGG	-	chr1.3:53878736-53878755	MS.gene71450:intron	30.0%
GGAGAATTTAATGAACCATT+GGG	-	chr1.3:53878040-53878059	MS.gene71450:CDS	30.0%
GGTAAATATAACATCCCTTA+TGG	-	chr1.3:53877692-53877711	MS.gene71450:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	53877260	53879747	53877260	ID=MS.gene71450
chr1.3	mRNA	53877260	53879747	53877260	ID=MS.gene71450.t1;Parent=MS.gene71450
chr1.3	exon	53879315	53879747	53879315	ID=MS.gene71450.t1.exon1;Parent=MS.gene71450.t1
chr1.3	CDS	53879315	53879747	53879315	ID=cds.MS.gene71450.t1;Parent=MS.gene71450.t1
chr1.3	exon	53878852	53879034	53878852	ID=MS.gene71450.t1.exon2;Parent=MS.gene71450.t1
chr1.3	CDS	53878852	53879034	53878852	ID=cds.MS.gene71450.t1;Parent=MS.gene71450.t1
chr1.3	exon	53877654	53878471	53877654	ID=MS.gene71450.t1.exon3;Parent=MS.gene71450.t1
chr1.3	CDS	53877654	53878471	53877654	ID=cds.MS.gene71450.t1;Parent=MS.gene71450.t1
chr1.3	exon	53877260	53877511	53877260	ID=MS.gene71450.t1.exon4;Parent=MS.gene71450.t1
chr1.3	CDS	53877260	53877511	53877260	ID=cds.MS.gene71450.t1;Parent=MS.gene71450.t1

Gene Sequence

>MS.gene71450

ATGAAACCAAAGACTGGTTTTGAAGTCATTCTGAATTATTCTAGTCAATGTCATAAGGAAAAATTGCAAACTGAGTCAAGTGCAGGTGCAAATGCAGCTTCTAGAGCAAACACAATCTTTTCTGCCAATGATCCTCTATCTGAAATAGTTTGGACTCCAGATAAAGGTTTCAGTCTTAAATGTGTCGATTCAAGTTTTACTAACAAAAATACCTCGCTTTTGCGCGATGTCGAACCTAGTAGTATGGTTCTTGCTCTGCTACAAAGTGTTACTTGTGCCACAGATAAACCTGCAGAAGACGTTTTAGTGCAACCTCTTGCTGTTATATGCGCAAAGAGTGACGTTTCTTCGACAGGTACTCCTGCTAGGAATTCAACAAGCGATTCAGTTGCCATCTTTCCAGAATATACACCATATCAAGAACATGATACAGGTAAATATAACATCCCTTATGGATCCTACAGATGTAGGGAAATGTGAGTTTGCAGTAAGAACTTTGGAGTCAAGTATACATTATTGAAGTATTTACTTTGTCACGAGGTGTCAGCTCAATGGTAAGAACTTGGCCGTGTAACCTGAAGGGATGAAATTCAAATCCCTCGGGGACGGTTGAAAAATGACCACTAGTGTCACTTTAATTAATAACAATTTTTTCTTTCTCCAATTTTTTCCTTTAAAACCTTTTTTGCTCAATCATGATGTTGATCTGCCAGGATCTGGTGATAATTTGGAGAAAATTAACTCTGCTGGAGGAACATCTGATTTGGCAAATGGTCAAAAGGAGAATTTAATGAACCATTGGGAGAAGAATATTTGTGCTCAAGCCTGCATTGAAATTGAAGCAGCTAAAATATCTGAGATAATGGAAGAGGAAAACAAATCTTCTACTATTTCAGGTATTTGCTGTCATAATTGATTCTTTGGTAGATCTTTGCCATTTTAAGATACTATCATGATTTGGAACACATTCTAGAATTATTGATATTTGTACACAATTTTATATAAATTTTCCTCAATCATGGAAAATAAATCCAATTAACACTGCATATCAAAGGCATGTACGGTGACACATGTCAGTATCCGACACTGACACATGTGGTTACATTCAATCACTCTCATTTTCTTAAATTATTACTGTGTCTACATGTCAGTGTCGTGTCCGGTTATGCGACAATGCATTCTAGTAACCTGCTGAAGTTATTAATTTTTAAAGAAAATTGCAAGTCCATTCTCTTTTGCATATCTAAAATATCATCTGCATCATGACTTTCTTCAGGTCAGATCAACCAAAGTCCAGTTGGTAATTTACAAGTTCATCAAGATGGGTCTAAACTTAGCATGGAACAAAATCCTTCACCAAGGAAACATTACAAAGAAGGCTTGGATACTAGTGTTGACAACATGGTGGTTGAAATAGAAGATGACTCGTATACTAGAGTTGAACACATGATTGAAGATAAAGGTTCTAATCCTCTTGGAACATATTTGATATCATCCGGCATTAATCATTCGGAAAAAATGGATTTAACTTCACAGAAAGATTTACAAACTTTCAGCTGTAAAGCAGCTACTTCTGCAGCAACAAGCAGAGTTCTTGTTTCAAAATCCAATGATAATAAAAACAAATCCAAGGTCAATGAGATGATGCTACCATACAATAAGAATGAGAGTCATCTAAGTTTTGAAAACTATCATAATCCTGGATTGTTTTTGGCAAGTAGGAAGCGATCGAAACAAGAAGTGATAATTGCGAGCAAAAGAGTCAAAATGCCAATTCAAAAAACTTCATCATATTCTAAATCCTATGTTAATCATCATAGCTCATTCATGAACTTGGTTTCAAACATGACTAAAGGGTACTCACAATCTAGTCAAGATGAGGAGAAGTCTTTGGCTCTTGCTCATGAAAATCCTGATCGCCACCTTCGATGGCCTTACAAGGGTCAAGCTCCGGAGATTAAAAATTCCTTCAAATCCAATTTTCAGTCCACATATTGTCAGTGTTTTGAGAATGCCGGAACAAGAATGTCTCATCAAGTAGGAGAGTCTTCGAGCAATAGCCTCTGCAGACGGTGTTCTTCTTTACATCCTCAGGTTAGGCCTATAAATTTTCTCAATAGCCATGAACACTGAAAAATATCACATCGAAGAATGAATTTTTTTACAAAATAGAATCAGTAAGGAGAAAGAAAGAATGACATTATACTCACCAATTTCTCATTTGAATTACTGCAAGGTTGAAGAGACTAAAGAACAATATGCTGATAACCAATTGGTCATTGAGACTAAAAAGTTACAGAATTGTTTTATCAACAAAGAGGCTTCTTCTTCCATTGGTCTTAAAGATGAGAAGGGAAACAATGAGGACATATCTAAGCATAAGTTTAACAATGTTACACCTTTTTCGAGATTGAGAGATTCAGAGGCAATGGTTTCCATGTTTGCAAAGAGGTTAGGTGCCATCAAACAATGCCAACAAACAGAATAG

Protein sequence

>MS.gene71450.t1

MKPKTGFEVILNYSSQCHKEKLQTESSAGANAASRANTIFSANDPLSEIVWTPDKGFSLKCVDSSFTNKNTSLLRDVEPSSMVLALLQSVTCATDKPAEDVLVQPLAVICAKSDVSSTGTPARNSTSDSVAIFPEYTPYQEHDTGSGDNLEKINSAGGTSDLANGQKENLMNHWEKNICAQACIEIEAAKISEIMEEENKSSTISGQINQSPVGNLQVHQDGSKLSMEQNPSPRKHYKEGLDTSVDNMVVEIEDDSYTRVEHMIEDKGSNPLGTYLISSGINHSEKMDLTSQKDLQTFSCKAATSAATSRVLVSKSNDNKNKSKVNEMMLPYNKNESHLSFENYHNPGLFLASRKRSKQEVIIASKRVKMPIQKTSSYSKSYVNHHSSFMNLVSNMTKGYSQSSQDEEKSLALAHENPDRHLRWPYKGQAPEIKNSFKSNFQSTYCQCFENAGTRMSHQVGESSSNSLCRRCSSLHPQVEETKEQYADNQLVIETKKLQNCFINKEASSSIGLKDEKGNNEDISKHKFNNVTPFSRLRDSEAMVSMFAKRLGAIKQCQQTE