Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73250.t1 | XP_013454907.1 | 95.8 | 360 | 13 | 2 | 1 | 358 | 213 | 572 | 6.40E-155 | 557 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73250.t1 | Q9LZM8 | 61.9 | 236 | 74 | 6 | 2 | 222 | 188 | 422 | 6.4e-71 | 269.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73250.t1 | A0A072USU8 | 95.8 | 360 | 13 | 2 | 1 | 358 | 213 | 572 | 4.6e-155 | 557.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73250.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene73250 | 0.808766 | 2.64E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene73250 | 0.802175 | 6.36E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene73250 | 0.841292 | 5.19E-58 | -1.69E-46 |
| MS.gene049343 | MS.gene73250 | 0.845459 | 4.01E-59 | -1.69E-46 |
| MS.gene049404 | MS.gene73250 | 0.840333 | 9.26E-58 | -1.69E-46 |
| MS.gene049435 | MS.gene73250 | 0.819557 | 1.09E-52 | -1.69E-46 |
| MS.gene049452 | MS.gene73250 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene049647 | MS.gene73250 | 0.809838 | 1.55E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene73250 | 0.81558 | 8.60E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene73250 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene050137 | MS.gene73250 | 0.83425 | 3.34E-56 | -1.69E-46 |
| MS.gene050156 | MS.gene73250 | 0.827117 | 1.87E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene73250 | 0.830371 | 3.05E-55 | -1.69E-46 |
| MS.gene050680 | MS.gene73250 | 0.823242 | 1.54E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene73250 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene73250 | 0.802392 | 5.73E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene73250 | 0.810361 | 1.20E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene73250 | 0.805438 | 1.33E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene73250 | 0.812657 | 3.80E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene73250 | 0.813711 | 2.23E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene73250 | 0.81755 | 3.11E-52 | -1.69E-46 |
| MS.gene051574 | MS.gene73250 | 0.803159 | 3.98E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene73250 | 0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene73250 | 0.81983 | 9.45E-53 | -1.69E-46 |
| MS.gene052012 | MS.gene73250 | 0.811579 | 6.52E-51 | -1.69E-46 |
| MS.gene052056 | MS.gene73250 | -0.815379 | 9.53E-52 | -1.69E-46 |
| MS.gene052108 | MS.gene73250 | 0.811504 | 6.77E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene73250 | 0.817697 | 2.88E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene73250 | 0.83133 | 1.77E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene73250 | 0.839774 | 1.30E-57 | -1.69E-46 |
| MS.gene052534 | MS.gene73250 | 0.809713 | 1.65E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene73250 | 0.81948 | 1.14E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene73250 | 0.827554 | 1.47E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene73250 | 0.822681 | 2.08E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene73250 | 0.81 | 1.43E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene73250 | 0.816426 | 5.56E-52 | -1.69E-46 |
| MS.gene053054 | MS.gene73250 | -0.819054 | 1.42E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene73250 | 0.802707 | 4.94E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene73250 | 0.865587 | 5.30E-65 | -1.69E-46 |
| MS.gene053226 | MS.gene73250 | 0.850319 | 1.83E-60 | -1.69E-46 |
| MS.gene054139 | MS.gene73250 | 0.816051 | 6.75E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene73250 | 0.842789 | 2.09E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene73250 | 0.812714 | 3.69E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene73250 | 0.814311 | 1.64E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene73250 | -0.846087 | 2.71E-59 | -1.69E-46 |
| MS.gene054405 | MS.gene73250 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene73250 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene73250 | 0.827706 | 1.35E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene73250 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene73250 | 0.847954 | 8.34E-60 | -1.69E-46 |
| MS.gene054576 | MS.gene73250 | 0.807629 | 4.60E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene73250 | 0.837376 | 5.39E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene73250 | 0.820689 | 6.01E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene73250 | 0.838155 | 3.40E-57 | -1.69E-46 |
| MS.gene055166 | MS.gene73250 | 0.809091 | 2.25E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene73250 | 0.836448 | 9.30E-57 | -1.69E-46 |
| MS.gene055228 | MS.gene73250 | 0.823938 | 1.06E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene73250 | 0.80478 | 1.83E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene73250 | 0.814343 | 1.62E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene73250 | 0.805313 | 1.42E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene73250 | 0.846445 | 2.16E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene73250 | 0.845443 | 4.05E-59 | -1.69E-46 |
| MS.gene055926 | MS.gene73250 | 0.843529 | 1.33E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene73250 | 0.854522 | 1.16E-61 | -1.69E-46 |
| MS.gene056050 | MS.gene73250 | 0.848491 | 5.92E-60 | -1.69E-46 |
| MS.gene056162 | MS.gene73250 | 0.830662 | 2.59E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene73250 | 0.842004 | 3.37E-58 | -1.69E-46 |
| MS.gene056366 | MS.gene73250 | 0.848667 | 5.30E-60 | -1.69E-46 |
| MS.gene056506 | MS.gene73250 | 0.824099 | 9.70E-54 | -1.69E-46 |
| MS.gene056776 | MS.gene73250 | 0.833237 | 5.99E-56 | -1.69E-46 |
| MS.gene056779 | MS.gene73250 | 0.807804 | 4.23E-50 | -1.69E-46 |
| MS.gene056792 | MS.gene73250 | 0.805374 | 1.38E-49 | -1.69E-46 |
| MS.gene057012 | MS.gene73250 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene73250 | 0.84643 | 2.18E-59 | -1.69E-46 |
| MS.gene057060 | MS.gene73250 | 0.807133 | 5.86E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene73250 | 0.842202 | 2.99E-58 | -1.69E-46 |
| MS.gene057414 | MS.gene73250 | 0.818401 | 2.00E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene73250 | 0.821372 | 4.18E-53 | -1.69E-46 |
| MS.gene057855 | MS.gene73250 | 0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene73250 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene73250 | 0.826442 | 2.71E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene73250 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene73250 | 0.818011 | 2.45E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene73250 | 0.838411 | 2.92E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene73250 | 0.811466 | 6.90E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene73250 | 0.827039 | 1.95E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene73250 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene059607 | MS.gene73250 | 0.806945 | 6.43E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene73250 | 0.812167 | 4.86E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene73250 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene73250 | -0.832998 | 6.86E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene73250 | 0.804848 | 1.77E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene73250 | 0.836495 | 9.05E-57 | -1.69E-46 |
| MS.gene060634 | MS.gene73250 | -0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene73250 | 0.82052 | 6.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73250.t1 | MTR_4g019450 | 97.222 | 360 | 8 | 2 | 1 | 358 | 213 | 572 | 0.0 | 729 |
| MS.gene73250.t1 | MTR_7g065050 | 61.281 | 359 | 102 | 12 | 1 | 351 | 154 | 483 | 9.33e-141 | 409 |
| MS.gene73250.t1 | MTR_2g095050 | 53.589 | 209 | 81 | 2 | 41 | 234 | 317 | 524 | 2.30e-67 | 223 |
| MS.gene73250.t1 | MTR_8g078480 | 54.884 | 215 | 86 | 4 | 31 | 236 | 452 | 664 | 2.70e-66 | 224 |
| MS.gene73250.t1 | MTR_5g018860 | 50.216 | 231 | 105 | 3 | 20 | 242 | 390 | 618 | 1.39e-64 | 218 |
| MS.gene73250.t1 | MTR_7g106320 | 50.228 | 219 | 84 | 3 | 43 | 247 | 250 | 457 | 3.47e-64 | 216 |
| MS.gene73250.t1 | MTR_1g023050 | 52.105 | 190 | 87 | 1 | 43 | 232 | 255 | 440 | 7.55e-62 | 209 |
| MS.gene73250.t1 | MTR_1g057790 | 56.497 | 177 | 60 | 2 | 43 | 209 | 238 | 407 | 8.24e-61 | 206 |
| MS.gene73250.t1 | MTR_4g051532 | 52.261 | 199 | 88 | 3 | 43 | 236 | 294 | 490 | 1.70e-60 | 206 |
| MS.gene73250.t1 | MTR_8g098815 | 54.839 | 186 | 60 | 3 | 41 | 211 | 256 | 432 | 1.92e-59 | 202 |
| MS.gene73250.t1 | MTR_3g112300 | 53.409 | 176 | 78 | 1 | 43 | 218 | 244 | 415 | 6.57e-59 | 199 |
| MS.gene73250.t1 | MTR_3g112300 | 53.409 | 176 | 78 | 1 | 43 | 218 | 244 | 415 | 1.30e-58 | 199 |
| MS.gene73250.t1 | MTR_3g112290 | 47.179 | 195 | 85 | 3 | 44 | 226 | 238 | 426 | 8.85e-57 | 191 |
| MS.gene73250.t1 | MTR_3g112300 | 49.020 | 153 | 74 | 1 | 43 | 195 | 244 | 392 | 1.71e-43 | 155 |
| MS.gene73250.t1 | MTR_1g016490 | 38.144 | 194 | 108 | 4 | 43 | 236 | 322 | 503 | 1.08e-36 | 139 |
| MS.gene73250.t1 | MTR_3g112300 | 45.455 | 132 | 68 | 1 | 43 | 174 | 244 | 371 | 2.27e-31 | 122 |
| MS.gene73250.t1 | MTR_5g033720 | 54.902 | 51 | 23 | 0 | 159 | 209 | 246 | 296 | 7.35e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73250.t1 | AT5G02030 | 49.180 | 366 | 153 | 10 | 1 | 348 | 187 | 537 | 7.33e-90 | 281 |
| MS.gene73250.t1 | AT4G34610 | 44.068 | 295 | 136 | 8 | 44 | 333 | 209 | 479 | 7.18e-64 | 212 |
| MS.gene73250.t1 | AT4G34610 | 44.068 | 295 | 136 | 8 | 44 | 333 | 209 | 479 | 7.18e-64 | 212 |
| MS.gene73250.t1 | AT4G34610 | 44.068 | 295 | 136 | 8 | 44 | 333 | 209 | 479 | 7.18e-64 | 212 |
| MS.gene73250.t1 | AT4G34610 | 44.068 | 295 | 136 | 8 | 44 | 333 | 209 | 479 | 7.18e-64 | 212 |
| MS.gene73250.t1 | AT4G36870 | 56.122 | 196 | 73 | 4 | 31 | 215 | 372 | 565 | 1.10e-61 | 210 |
| MS.gene73250.t1 | AT4G36870 | 56.122 | 196 | 73 | 4 | 31 | 215 | 372 | 565 | 1.10e-61 | 210 |
| MS.gene73250.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 3.36e-61 | 205 |
| MS.gene73250.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 3.36e-61 | 205 |
| MS.gene73250.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 3.36e-61 | 205 |
| MS.gene73250.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 3.36e-61 | 205 |
| MS.gene73250.t1 | AT1G19700 | 52.604 | 192 | 66 | 3 | 43 | 218 | 239 | 421 | 3.36e-61 | 205 |
| MS.gene73250.t1 | AT2G16400 | 52.284 | 197 | 87 | 3 | 44 | 233 | 176 | 372 | 4.61e-61 | 203 |
| MS.gene73250.t1 | AT1G75410 | 53.333 | 180 | 80 | 1 | 43 | 218 | 237 | 416 | 4.84e-61 | 204 |
| MS.gene73250.t1 | AT1G75410 | 53.333 | 180 | 80 | 1 | 43 | 218 | 237 | 416 | 4.84e-61 | 204 |
| MS.gene73250.t1 | AT2G27990 | 56.593 | 182 | 74 | 2 | 43 | 224 | 324 | 500 | 4.84e-61 | 206 |
| MS.gene73250.t1 | AT2G23760 | 54.592 | 196 | 76 | 4 | 31 | 215 | 298 | 491 | 8.68e-60 | 203 |
| MS.gene73250.t1 | AT2G23760 | 54.592 | 196 | 76 | 4 | 31 | 215 | 298 | 491 | 8.68e-60 | 203 |
| MS.gene73250.t1 | AT2G23760 | 54.592 | 196 | 76 | 4 | 31 | 215 | 298 | 491 | 8.68e-60 | 203 |
| MS.gene73250.t1 | AT2G35940 | 46.250 | 240 | 100 | 4 | 43 | 259 | 272 | 505 | 3.12e-57 | 197 |
| MS.gene73250.t1 | AT2G35940 | 46.250 | 240 | 100 | 4 | 43 | 259 | 272 | 505 | 3.12e-57 | 197 |
| MS.gene73250.t1 | AT2G35940 | 46.250 | 240 | 100 | 4 | 43 | 259 | 272 | 505 | 3.12e-57 | 197 |
| MS.gene73250.t1 | AT5G41410 | 51.813 | 193 | 76 | 3 | 41 | 220 | 275 | 463 | 1.12e-55 | 192 |
| MS.gene73250.t1 | AT2G27220 | 38.305 | 295 | 139 | 7 | 43 | 328 | 136 | 396 | 1.58e-55 | 187 |
| MS.gene73250.t1 | AT2G27220 | 38.305 | 295 | 139 | 7 | 43 | 328 | 136 | 396 | 1.58e-55 | 187 |
| MS.gene73250.t1 | AT2G27220 | 38.144 | 291 | 137 | 7 | 47 | 328 | 158 | 414 | 6.27e-53 | 181 |
| MS.gene73250.t1 | AT2G23760 | 43.145 | 248 | 76 | 5 | 31 | 215 | 298 | 543 | 3.47e-50 | 178 |
| MS.gene73250.t1 | AT1G75430 | 42.574 | 202 | 98 | 5 | 44 | 232 | 90 | 286 | 4.71e-50 | 169 |
| MS.gene73250.t1 | AT4G36870 | 52.542 | 177 | 71 | 4 | 31 | 196 | 372 | 546 | 1.59e-47 | 169 |
| MS.gene73250.t1 | AT1G75410 | 50.318 | 157 | 74 | 1 | 43 | 195 | 237 | 393 | 1.94e-46 | 163 |
| MS.gene73250.t1 | AT4G36870 | 52.000 | 175 | 71 | 4 | 31 | 194 | 372 | 544 | 4.26e-46 | 165 |
| MS.gene73250.t1 | AT4G32980 | 36.702 | 188 | 104 | 3 | 43 | 226 | 274 | 450 | 5.51e-35 | 134 |
| MS.gene73250.t1 | AT4G32980 | 36.702 | 188 | 104 | 3 | 43 | 226 | 274 | 450 | 5.51e-35 | 134 |
| MS.gene73250.t1 | AT2G27990 | 46.970 | 132 | 65 | 2 | 43 | 174 | 324 | 450 | 8.96e-30 | 119 |
| MS.gene73250.t1 | AT1G75430 | 36.111 | 144 | 74 | 5 | 44 | 174 | 90 | 228 | 4.41e-22 | 95.1 |
| MS.gene73250.t1 | AT1G23380 | 52.727 | 55 | 26 | 0 | 155 | 209 | 253 | 307 | 2.27e-11 | 64.7 |
| MS.gene73250.t1 | AT1G23380 | 52.727 | 55 | 26 | 0 | 155 | 209 | 255 | 309 | 2.30e-11 | 64.7 |
| MS.gene73250.t1 | AT1G70510 | 52.727 | 55 | 26 | 0 | 155 | 209 | 237 | 291 | 6.95e-11 | 63.2 |
| MS.gene73250.t1 | AT1G70510 | 52.727 | 55 | 26 | 0 | 155 | 209 | 241 | 295 | 7.74e-11 | 62.8 |
Find 76 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAATTACCTTCATTAT+TGG | 0.154139 | 4.1:-78819858 | None:intergenic |
| AATCGTTGAGCTGCACTTAA+AGG | 0.224777 | 4.1:-78819818 | None:intergenic |
| ACATCATTTGAGTATGTTTC+CGG | 0.258945 | 4.1:+78818312 | MS.gene73250:CDS |
| CTTCAAGCATCTAAAATGTT+TGG | 0.311343 | 4.1:-78818382 | None:intergenic |
| CTTTCACTATTGCCAAATCT+TGG | 0.311544 | 4.1:-78818477 | None:intergenic |
| TGTTGTCCTTGACTCCTAAT+TGG | 0.313495 | 4.1:-78819626 | None:intergenic |
| TGACTCCTAATTGGTATGTT+AGG | 0.316989 | 4.1:-78819617 | None:intergenic |
| TGCAGCTCCTTATGCAAGTT+TGG | 0.333083 | 4.1:+78818344 | MS.gene73250:CDS |
| CCAACTACAGTTCAATAATA+AGG | 0.348229 | 4.1:+78818419 | MS.gene73250:CDS |
| TTAAGTGCAGCTCAACGATT+TGG | 0.354571 | 4.1:+78819821 | MS.gene73250:CDS |
| TTGTGTATCAGGTGTCAAAT+TGG | 0.359128 | 4.1:+78819369 | MS.gene73250:intron |
| TACCTTCATTATTGGTTTCA+AGG | 0.361603 | 4.1:-78819850 | None:intergenic |
| TGCTGATTCTTCTTTGATGA+TGG | 0.364670 | 4.1:+78815224 | MS.gene73250:CDS |
| ATCTTGGAGATTCTTCCTTC+CGG | 0.371264 | 4.1:-78818461 | None:intergenic |
| GTTGGTAGTGGAAGCAATAA+TGG | 0.383790 | 4.1:+78819713 | MS.gene73250:CDS |
| AACTTATCTGTCGATGTAGA+TGG | 0.389665 | 4.1:-78819557 | None:intergenic |
| AAGGAAGAATCTCCAAGATT+TGG | 0.395392 | 4.1:+78818465 | MS.gene73250:CDS |
| TAAATGCAAGAGTAAGGCTT+TGG | 0.402125 | 4.1:+78819396 | MS.gene73250:CDS |
| GTTGGAAATCTTGGTGTTTG+TGG | 0.405935 | 4.1:+78815183 | MS.gene73250:CDS |
| AAATTCCTAACATACCAATT+AGG | 0.407283 | 4.1:+78819612 | MS.gene73250:CDS |
| TCCAAATGATTCACAACAAA+AGG | 0.413681 | 4.1:+78819463 | MS.gene73250:CDS |
| TCTTGGTGTTTGTGGTGATA+AGG | 0.415490 | 4.1:+78815191 | MS.gene73250:CDS |
| TGAGCTGCACTTAAAGGAAA+TGG | 0.423599 | 4.1:-78819812 | None:intergenic |
| CCTTATTATTGAACTGTAGT+TGG | 0.431582 | 4.1:-78818419 | None:intergenic |
| GGTTCATAAATGCAAGAGTA+AGG | 0.433955 | 4.1:+78819390 | MS.gene73250:CDS |
| TATGTTAGGAATTTCATTTA+CGG | 0.436827 | 4.1:-78819603 | None:intergenic |
| TCTTCACTCAATCTTTCTAA+AGG | 0.440933 | 4.1:-78815252 | None:intergenic |
| CTTTATCAAAATCATGGGAT+TGG | 0.443197 | 4.1:+78819779 | MS.gene73250:CDS |
| TTTATCGCCAAACTTGCATA+AGG | 0.446881 | 4.1:-78818351 | None:intergenic |
| GCAGCTCAACGATTTGGTCT+TGG | 0.449764 | 4.1:+78819827 | MS.gene73250:CDS |
| CCTCTTTGAGGTCGCCATAC+AGG | 0.463860 | 4.1:-78818546 | None:intergenic |
| ATTTACGGCGCGCTTGTAAG+TGG | 0.464965 | 4.1:-78819588 | None:intergenic |
| AACCGGTCTATCGCGTAGCC+AGG | 0.468227 | 4.1:+78819246 | MS.gene73250:CDS |
| CGCTCGGGGAGTCCTCTTTG+AGG | 0.471673 | 4.1:-78818558 | None:intergenic |
| ATGTGTGATGTTGGAAATCT+TGG | 0.472538 | 4.1:+78815174 | MS.gene73250:CDS |
| TTGAGTGAAGAAGATCCATT+TGG | 0.474029 | 4.1:+78815264 | MS.gene73250:CDS |
| CTAGGACTTTATCAAAATCA+TGG | 0.477214 | 4.1:+78819773 | MS.gene73250:CDS |
| TAACCTGACCTATGGCTGTA+AGG | 0.479106 | 4.1:-78818507 | None:intergenic |
| CCAACACCTACATGTTGAAA+AGG | 0.482247 | 4.1:-78819680 | None:intergenic |
| TGTCGATGTAGATGGATTCT+CGG | 0.485159 | 4.1:-78819549 | None:intergenic |
| ATGTGAATTTCTTCCACCAT+TGG | 0.498530 | 4.1:-78819422 | None:intergenic |
| TTGAGCAGCAACAACCTGTA+TGG | 0.499228 | 4.1:+78818532 | MS.gene73250:CDS |
| AGAACAGTCACAGCACGCTC+GGG | 0.499463 | 4.1:-78818573 | None:intergenic |
| CTGTGACTGTTCTTAGAGCT+TGG | 0.502191 | 4.1:+78818583 | MS.gene73250:CDS |
| TTGGAAGAGATGTGTGATGT+TGG | 0.509914 | 4.1:+78815165 | None:intergenic |
| AACAAAAGGAAGAAAATTGT+AGG | 0.510651 | 4.1:+78819477 | MS.gene73250:CDS |
| GGCCTTGAAACCAATAATGA+AGG | 0.519264 | 4.1:+78819848 | MS.gene73250:CDS |
| AACAGGTTTATAAGCGGTAC+AGG | 0.526188 | 4.1:+78818259 | MS.gene73250:intron |
| ATAATGTTGGCTAAACAAAC+CGG | 0.528557 | 4.1:+78819229 | MS.gene73250:CDS |
| TTATTGCGACCATCACCAAA+TGG | 0.532053 | 4.1:-78815279 | None:intergenic |
| GGAATGAACATTGTTGGTAG+TGG | 0.533845 | 4.1:+78819701 | MS.gene73250:CDS |
| GGTGTTGGAATGAACATTGT+TGG | 0.538133 | 4.1:+78819695 | MS.gene73250:CDS |
| TGATACAGATAAAATAATGT+TGG | 0.538302 | 4.1:+78819216 | MS.gene73250:CDS |
| GAGGAGGACCTTACAGCCAT+AGG | 0.542996 | 4.1:+78818499 | MS.gene73250:CDS |
| AGATTTGGCAATAGTGAAAG+AGG | 0.547255 | 4.1:+78818480 | MS.gene73250:CDS |
| GGACCTTACAGCCATAGGTC+AGG | 0.547661 | 4.1:+78818504 | MS.gene73250:CDS |
| TAGGACTTTATCAAAATCAT+GGG | 0.549166 | 4.1:+78819774 | MS.gene73250:CDS |
| AAGAACAGTCACAGCACGCT+CGG | 0.552428 | 4.1:-78818574 | None:intergenic |
| AACATACCAATTAGGAGTCA+AGG | 0.566002 | 4.1:+78819620 | MS.gene73250:CDS |
| AGGAGCTGCATTGTTGAGGC+CGG | 0.568570 | 4.1:-78818331 | None:intergenic |
| ATACTACCAACAGATGCAAT+CGG | 0.575247 | 4.1:+78818284 | MS.gene73250:CDS |
| CATAAGGAGCTGCATTGTTG+AGG | 0.575307 | 4.1:-78818335 | None:intergenic |
| GCTCAAGATAACCTGACCTA+TGG | 0.580908 | 4.1:-78818515 | None:intergenic |
| TACCTGGCTACGCGATAGAC+CGG | 0.588694 | 4.1:-78819248 | None:intergenic |
| GAAACTAGAGAAGTATCTGA+AGG | 0.590625 | 4.1:-78819527 | None:intergenic |
| GAAGAAGATCCATTTGGTGA+TGG | 0.601601 | 4.1:+78815270 | MS.gene73250:CDS |
| AGTAAGGCTTTGGAAACCAA+TGG | 0.617622 | 4.1:+78819406 | MS.gene73250:CDS |
| TTACGACCGATTGCATCTGT+TGG | 0.619652 | 4.1:-78818290 | None:intergenic |
| AGTAATGTGTCATTGACACT+AGG | 0.633869 | 4.1:+78819755 | MS.gene73250:CDS |
| GAACAGTCACAGCACGCTCG+GGG | 0.634057 | 4.1:-78818572 | None:intergenic |
| CCTGTATGGCGACCTCAAAG+AGG | 0.642112 | 4.1:+78818546 | MS.gene73250:CDS |
| ATTGTTGACTATGCTTGATG+AGG | 0.645801 | 4.1:+78815308 | MS.gene73250:CDS |
| TTACTCAACAGGTTTATAAG+CGG | 0.661325 | 4.1:+78818253 | MS.gene73250:intron |
| AAATTCACATGCTAGAAACA+AGG | 0.670651 | 4.1:+78819435 | MS.gene73250:CDS |
| AAGGCTTTGGAAACCAATGG+TGG | 0.671971 | 4.1:+78819409 | MS.gene73250:CDS |
| TTTGGCAATAGTGAAAGAGG+AGG | 0.703422 | 4.1:+78818483 | MS.gene73250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr4.1:78816182-78816201 | None:intergenic | 10.0% |
| !! | TAAAATTTCACTTATAATTA+GGG | - | chr4.1:78816491-78816510 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr4.1:78816183-78816202 | None:intergenic | 10.0% |
| !! | TTAAAATTTCACTTATAATT+AGG | - | chr4.1:78816492-78816511 | None:intergenic | 10.0% |
| !!! | TATATTTTTAGATGATAATA+AGG | + | chr4.1:78816342-78816361 | MS.gene73250:intron | 10.0% |
| !!! | TTGTAATTTTAATACATTAA+GGG | - | chr4.1:78818812-78818831 | None:intergenic | 10.0% |
| !!! | TTTCCATTTTTAATTTTTTT+TGG | + | chr4.1:78815546-78815565 | MS.gene73250:intron | 10.0% |
| !!! | TTTGTAATTTTAATACATTA+AGG | - | chr4.1:78818813-78818832 | None:intergenic | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr4.1:78816218-78816237 | MS.gene73250:intron | 15.0% |
| !! | ACTAACAAAAAATATAATTC+AGG | - | chr4.1:78818842-78818861 | None:intergenic | 15.0% |
| !! | AGAAAAATAAATAACTTCAT+TGG | + | chr4.1:78816561-78816580 | MS.gene73250:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr4.1:78816181-78816200 | None:intergenic | 15.0% |
| !! | ATAGATTTATAGATTTATGT+TGG | - | chr4.1:78817976-78817995 | None:intergenic | 15.0% |
| !! | CTAACAAAAAATATAATTCA+GGG | - | chr4.1:78818841-78818860 | None:intergenic | 15.0% |
| !! | TAAGCTAACTATTAATAATA+TGG | + | chr4.1:78817662-78817681 | MS.gene73250:intron | 15.0% |
| !! | TCTCCAAAAAAAATTAAAAA+TGG | - | chr4.1:78815552-78815571 | None:intergenic | 15.0% |
| !! | TGTCTTAATTTCTAATTAAT+AGG | + | chr4.1:78815817-78815836 | MS.gene73250:intron | 15.0% |
| !! | TTTCTAATTAATAGGTTAAT+AGG | + | chr4.1:78815825-78815844 | MS.gene73250:intron | 15.0% |
| !!! | AATAATTAGATTCTGAAATA+TGG | - | chr4.1:78817415-78817434 | None:intergenic | 15.0% |
| !!! | ATAATTAGATTCTGAAATAT+GGG | - | chr4.1:78817414-78817433 | None:intergenic | 15.0% |
| !!! | GAAATTAATGATTTAGAATA+TGG | - | chr4.1:78819298-78819317 | None:intergenic | 15.0% |
| !!! | TAAGAAAAAATCTATGTTTT+AGG | + | chr4.1:78816784-78816803 | MS.gene73250:intron | 15.0% |
| !!! | TAAGTATTCTTTTAAAAAAG+TGG | + | chr4.1:78815686-78815705 | MS.gene73250:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr4.1:78816158-78816177 | None:intergenic | 20.0% |
| !! | AACATAATTACCTTCATTAT+TGG | - | chr4.1:78819861-78819880 | None:intergenic | 20.0% |
| !! | AATAAACTATCAAAATGCTT+AGG | + | chr4.1:78817287-78817306 | MS.gene73250:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr4.1:78816126-78816145 | None:intergenic | 20.0% |
| !! | ATAAACTATCAAAATGCTTA+GGG | + | chr4.1:78817288-78817307 | MS.gene73250:intron | 20.0% |
| !! | ATAGATATTGTTATATTGGT+AGG | - | chr4.1:78819348-78819367 | None:intergenic | 20.0% |
| !! | ATCTTAATTTATGTGCATTA+AGG | + | chr4.1:78815791-78815810 | MS.gene73250:intron | 20.0% |
| !! | ATTCTAAATACTCTCAATTT+GGG | + | chr4.1:78815600-78815619 | MS.gene73250:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr4.1:78816217-78816236 | MS.gene73250:intron | 20.0% |
| !! | CAAATTTGATATACCAATAA+AGG | + | chr4.1:78818678-78818697 | MS.gene73250:intron | 20.0% |
| !! | CAAGATAGATATTGTTATAT+TGG | - | chr4.1:78819352-78819371 | None:intergenic | 20.0% |
| !! | CAATACTCTTTCTTATATTT+GGG | + | chr4.1:78816921-78816940 | MS.gene73250:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr4.1:78816125-78816144 | None:intergenic | 20.0% |
| !! | GTTTATCTAGAAAAAGAAAT+GGG | + | chr4.1:78817159-78817178 | MS.gene73250:intron | 20.0% |
| !! | TACTAAATTGACTAACAAAA+TGG | + | chr4.1:78818871-78818890 | MS.gene73250:intron | 20.0% |
| !! | TATGTTAGGAATTTCATTTA+CGG | - | chr4.1:78819606-78819625 | None:intergenic | 20.0% |
| !! | TATTCTAAATACTCTCAATT+TGG | + | chr4.1:78815599-78815618 | MS.gene73250:intron | 20.0% |
| !! | TATTTAGACCATTAACAAAT+TGG | - | chr4.1:78816615-78816634 | None:intergenic | 20.0% |
| !! | TCACTTAAAAAAGAAATCTA+TGG | - | chr4.1:78816001-78816020 | None:intergenic | 20.0% |
| !! | TGATACAGATAAAATAATGT+TGG | + | chr4.1:78819216-78819235 | MS.gene73250:CDS | 20.0% |
| !! | TGTTTATCTAGAAAAAGAAA+TGG | + | chr4.1:78817158-78817177 | MS.gene73250:intron | 20.0% |
| !! | TTAAAAAAGAAATCTATGGT+TGG | - | chr4.1:78815997-78816016 | None:intergenic | 20.0% |
| !! | TTCTTATAATTATGACTAGA+GGG | - | chr4.1:78816770-78816789 | None:intergenic | 20.0% |
| !! | TTGAAGTGGTTATATAATTA+GGG | - | chr4.1:78817845-78817864 | None:intergenic | 20.0% |
| !! | TTTCTTATAATTATGACTAG+AGG | - | chr4.1:78816771-78816790 | None:intergenic | 20.0% |
| !! | TTTGAATATCAAAGTCATTA+AGG | + | chr4.1:78818929-78818948 | MS.gene73250:intron | 20.0% |
| !!! | AAAGTATTAAAATAAGCAAG+TGG | + | chr4.1:78817718-78817737 | MS.gene73250:intron | 20.0% |
| !!! | AAGAATTTTGTCCAAAATTA+TGG | + | chr4.1:78817882-78817901 | MS.gene73250:intron | 20.0% |
| !!! | ATTATTTTATCTGTATCAGT+AGG | - | chr4.1:78819214-78819233 | None:intergenic | 20.0% |
| !!! | ATTATTTTTGTCATTTTGTG+TGG | + | chr4.1:78815468-78815487 | MS.gene73250:intron | 20.0% |
| !!! | GCTTTTTAAGAAAAGTTAAT+GGG | + | chr4.1:78815931-78815950 | MS.gene73250:intron | 20.0% |
| !!! | GGACACTTTTATTAAAAAAT+GGG | - | chr4.1:78816090-78816109 | None:intergenic | 20.0% |
| !!! | TATTCTTTTAAAAAAGTGGA+AGG | + | chr4.1:78815690-78815709 | MS.gene73250:intron | 20.0% |
| !!! | TTTATAGACCAATTTGTTAA+TGG | + | chr4.1:78816604-78816623 | MS.gene73250:intron | 20.0% |
| ! | AAAAATAAAATGGAACCTAG+TGG | + | chr4.1:78817001-78817020 | MS.gene73250:intron | 25.0% |
| ! | AAATATGGGTTTGAAAAGAT+AGG | - | chr4.1:78817400-78817419 | None:intergenic | 25.0% |
| ! | AAATTCCTAACATACCAATT+AGG | + | chr4.1:78819612-78819631 | MS.gene73250:CDS | 25.0% |
| ! | AACAAAAGGAAGAAAATTGT+AGG | + | chr4.1:78819477-78819496 | MS.gene73250:CDS | 25.0% |
| ! | AGGTGTATACCAATAATTTA+AGG | - | chr4.1:78816464-78816483 | None:intergenic | 25.0% |
| ! | ATTAAGGAAATACACATTCT+CGG | + | chr4.1:78818945-78818964 | MS.gene73250:intron | 25.0% |
| ! | ATTCTTGCATTATATTGTGA+TGG | + | chr4.1:78815886-78815905 | MS.gene73250:intron | 25.0% |
| ! | CGTTCAATAAATAATGTATG+TGG | - | chr4.1:78816847-78816866 | None:intergenic | 25.0% |
| ! | CTAATTATATAACCACTTCA+AGG | + | chr4.1:78817844-78817863 | MS.gene73250:intron | 25.0% |
| ! | CTTGAAGTGGTTATATAATT+AGG | - | chr4.1:78817846-78817865 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr4.1:78816159-78816178 | None:intergenic | 25.0% |
| ! | GCAATACTCTTTCTTATATT+TGG | + | chr4.1:78816920-78816939 | MS.gene73250:intron | 25.0% |
| ! | GGTGTATACCAATAATTTAA+GGG | - | chr4.1:78816463-78816482 | None:intergenic | 25.0% |
| ! | TAGGACTTTATCAAAATCAT+GGG | + | chr4.1:78819774-78819793 | MS.gene73250:CDS | 25.0% |
| ! | TCCTTGTTCAAGAATTAAAA+TGG | + | chr4.1:78817935-78817954 | MS.gene73250:intron | 25.0% |
| ! | TGGTAGGATTATAAATTCAT+TGG | - | chr4.1:78819332-78819351 | None:intergenic | 25.0% |
| ! | TTAGATGATAATAAGGTGAT+TGG | + | chr4.1:78816349-78816368 | MS.gene73250:intron | 25.0% |
| ! | TTTAAGAAAAGTTAATGGGA+AGG | + | chr4.1:78815935-78815954 | MS.gene73250:intron | 25.0% |
| !! | ATCAAAAGCTTTTACATTTC+TGG | + | chr4.1:78819150-78819169 | MS.gene73250:intron | 25.0% |
| !! | CTATTTCTCCCTTAAATTAT+TGG | + | chr4.1:78816452-78816471 | MS.gene73250:intron | 25.0% |
| !! | GAAGTATAAATCTTTTCCAA+TGG | - | chr4.1:78816271-78816290 | None:intergenic | 25.0% |
| !! | GGGACACTTTTATTAAAAAA+TGG | - | chr4.1:78816091-78816110 | None:intergenic | 25.0% |
| !! | TAAAATGGAATTTCTGCTTT+TGG | - | chr4.1:78817535-78817554 | None:intergenic | 25.0% |
| !! | TAGATTCTAATTTTCTTCTG+AGG | + | chr4.1:78817209-78817228 | MS.gene73250:intron | 25.0% |
| !! | TTTCAAGCTACATTTTATCA+CGG | - | chr4.1:78817110-78817129 | None:intergenic | 25.0% |
| !!! | ACCATTTTAATTCTTGAACA+AGG | - | chr4.1:78817939-78817958 | None:intergenic | 25.0% |
| !!! | ACTCGTTTTATATTTTAGTC+AGG | + | chr4.1:78819044-78819063 | MS.gene73250:intron | 25.0% |
| !!! | AGGTTAATAGGTTAGTTTTA+TGG | + | chr4.1:78815837-78815856 | MS.gene73250:intron | 25.0% |
| !!! | CTGTTTTTTTCTTCTTTTGT+CGG | + | chr4.1:78815417-78815436 | MS.gene73250:intron | 25.0% |
| !!! | GGCTTTTTAAGAAAAGTTAA+TGG | + | chr4.1:78815930-78815949 | MS.gene73250:intron | 25.0% |
| !!! | GTTCTATATTTTTACTCAAC+AGG | + | chr4.1:78818242-78818261 | MS.gene73250:intron | 25.0% |
| !!! | TTATATTTTAGTCAGGATCA+CGG | + | chr4.1:78819051-78819070 | MS.gene73250:intron | 25.0% |
| !!! | TTTTAGTTCTTGAATGTGTA+CGG | + | chr4.1:78818770-78818789 | MS.gene73250:intron | 25.0% |
| AAAAAATGGGTCAGTTATTC+CGG | - | chr4.1:78816077-78816096 | None:intergenic | 30.0% | |
| AAATTCACATGCTAGAAACA+AGG | + | chr4.1:78819435-78819454 | MS.gene73250:CDS | 30.0% | |
| AATGAACATTGTGTATGTCA+TGG | + | chr4.1:78817128-78817147 | MS.gene73250:intron | 30.0% | |
| ACATCATTTGAGTATGTTTC+CGG | + | chr4.1:78818312-78818331 | MS.gene73250:CDS | 30.0% | |
| ACTAACAAAATGGATATTCG+AGG | + | chr4.1:78818881-78818900 | MS.gene73250:intron | 30.0% | |
| ACTATATTGAAGGAATCCAT+TGG | + | chr4.1:78816252-78816271 | MS.gene73250:intron | 30.0% | |
| CAAATGTTTCATGACTTTGT+AGG | + | chr4.1:78819935-78819954 | MS.gene73250:intron | 30.0% | |
| CAATATCTATCTTGTGTATC+AGG | + | chr4.1:78819358-78819377 | MS.gene73250:intron | 30.0% | |
| CATATCAATGAAACAGCAAA+AGG | - | chr4.1:78818090-78818109 | None:intergenic | 30.0% | |
| CCAACTACAGTTCAATAATA+AGG | + | chr4.1:78818419-78818438 | MS.gene73250:CDS | 30.0% | |
| CCTTATTATTGAACTGTAGT+TGG | - | chr4.1:78818422-78818441 | None:intergenic | 30.0% | |
| CTAGGACTTTATCAAAATCA+TGG | + | chr4.1:78819773-78819792 | MS.gene73250:CDS | 30.0% | |
| CTTTATCAAAATCATGGGAT+TGG | + | chr4.1:78819779-78819798 | MS.gene73250:CDS | 30.0% | |
| GAAACATAGAATTGCACTTA+CGG | - | chr4.1:78818630-78818649 | None:intergenic | 30.0% | |
| GAAGGTAATTATGTTATGAG+TGG | + | chr4.1:78819866-78819885 | MS.gene73250:intron | 30.0% | |
| GTAAAGCCAATCTTACATAA+AGG | - | chr4.1:78816375-78816394 | None:intergenic | 30.0% | |
| GTTCTATACTTATTATCCGT+CGG | + | chr4.1:78818135-78818154 | MS.gene73250:intron | 30.0% | |
| TATCAAACATTGTCAACTGA+AGG | - | chr4.1:78818200-78818219 | None:intergenic | 30.0% | |
| TCCAAATGATTCACAACAAA+AGG | + | chr4.1:78819463-78819482 | MS.gene73250:CDS | 30.0% | |
| TCTTCACTCAATCTTTCTAA+AGG | - | chr4.1:78815255-78815274 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr4.1:78816174-78816193 | None:intergenic | 30.0% | |
| TTAAGGAAATACACATTCTC+GGG | + | chr4.1:78818946-78818965 | MS.gene73250:intron | 30.0% | |
| TTACTCAACAGGTTTATAAG+CGG | + | chr4.1:78818253-78818272 | MS.gene73250:intron | 30.0% | |
| TTGATTGCATAGTCATTTCT+TGG | - | chr4.1:78818037-78818056 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr4.1:78816222-78816241 | MS.gene73250:intron | 30.0% | |
| ! | ACATTTTAGATGCTTGAAGA+AGG | + | chr4.1:78818386-78818405 | MS.gene73250:CDS | 30.0% |
| ! | ATAATGTTGGCTAAACAAAC+CGG | + | chr4.1:78819229-78819248 | MS.gene73250:CDS | 30.0% |
| ! | CTTCAAGCATCTAAAATGTT+TGG | - | chr4.1:78818385-78818404 | None:intergenic | 30.0% |
| ! | GAATCACAAAATAGGCATTT+TGG | + | chr4.1:78819893-78819912 | MS.gene73250:intron | 30.0% |
| ! | GTGTATGTGATCCATAATTT+TGG | - | chr4.1:78817896-78817915 | None:intergenic | 30.0% |
| ! | TTCTTATATTTGGGACAAGA+AGG | + | chr4.1:78816930-78816949 | MS.gene73250:intron | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr4.1:78816112-78816131 | None:intergenic | 30.0% |
| ! | TTGCATTATATTGTGATGGA+TGG | + | chr4.1:78815890-78815909 | MS.gene73250:intron | 30.0% |
| ! | TTTTTGCTTATAGTTGTGAC+CGG | + | chr4.1:78816882-78816901 | MS.gene73250:intron | 30.0% |
| !! | ATTCTAATTTTCTTCTGAGG+TGG | + | chr4.1:78817212-78817231 | MS.gene73250:intron | 30.0% |
| !! | CATTTTGGAAGAGATGTAAT+TGG | + | chr4.1:78819908-78819927 | MS.gene73250:intron | 30.0% |
| !! | TAAGATTGGCTTTACTTGTT+TGG | + | chr4.1:78816380-78816399 | MS.gene73250:intron | 30.0% |
| !! | TACCTTCATTATTGGTTTCA+AGG | - | chr4.1:78819853-78819872 | None:intergenic | 30.0% |
| !! | TCCTTTTGTTGTGAATCATT+TGG | - | chr4.1:78819467-78819486 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr4.1:78816111-78816130 | None:intergenic | 30.0% |
| !!! | AGGTTTATTTTGTTAGTGGT+AGG | + | chr4.1:78815710-78815729 | MS.gene73250:intron | 30.0% |
| !!! | CTAGTTTAGCTTTTGTTTCA+TGG | + | chr4.1:78815763-78815782 | MS.gene73250:intron | 30.0% |
| !!! | GTGGTTTTGAATCACAAAAT+AGG | + | chr4.1:78819885-78819904 | MS.gene73250:intron | 30.0% |
| !!! | TGGAAGGTTTATTTTGTTAG+TGG | + | chr4.1:78815706-78815725 | MS.gene73250:intron | 30.0% |
| !!! | TTTTTGTCATTTTGTGTGGA+TGG | + | chr4.1:78815472-78815491 | MS.gene73250:intron | 30.0% |
| AAAAATGGGTCAGTTATTCC+GGG | - | chr4.1:78816076-78816095 | None:intergenic | 35.0% | |
| AAACAGCATCATGCCTTTAT+TGG | - | chr4.1:78818694-78818713 | None:intergenic | 35.0% | |
| AAACTTGACACATCTATGCT+GGG | + | chr4.1:78818726-78818745 | MS.gene73250:intron | 35.0% | |
| AACATACCAATTAGGAGTCA+AGG | + | chr4.1:78819620-78819639 | MS.gene73250:CDS | 35.0% | |
| AACTTATCTGTCGATGTAGA+TGG | - | chr4.1:78819560-78819579 | None:intergenic | 35.0% | |
| AAGGAAGAATCTCCAAGATT+TGG | + | chr4.1:78818465-78818484 | MS.gene73250:CDS | 35.0% | |
| AATGGGAAGGAATATATGCA+TGG | + | chr4.1:78815948-78815967 | MS.gene73250:intron | 35.0% | |
| ACTATGTCACCCAATTTGTA+GGG | + | chr4.1:78816020-78816039 | MS.gene73250:intron | 35.0% | |
| AGATTTGGCAATAGTGAAAG+AGG | + | chr4.1:78818480-78818499 | MS.gene73250:CDS | 35.0% | |
| AGCAAATCATCCCTACAAAT+TGG | - | chr4.1:78816033-78816052 | None:intergenic | 35.0% | |
| AGGAATATATGCATGGAGAT+TGG | + | chr4.1:78815955-78815974 | MS.gene73250:intron | 35.0% | |
| AGGCTAACATAAGGTTTGAT+TGG | + | chr4.1:78815730-78815749 | MS.gene73250:intron | 35.0% | |
| AGTGGTGCATATTTAATTGG+TGG | + | chr4.1:78817019-78817038 | MS.gene73250:intron | 35.0% | |
| ATACTACCAACAGATGCAAT+CGG | + | chr4.1:78818284-78818303 | MS.gene73250:CDS | 35.0% | |
| ATACTTTAACCAATGCCCTA+AGG | - | chr4.1:78817705-78817724 | None:intergenic | 35.0% | |
| ATCACATACACATCATTCAC+CGG | + | chr4.1:78817905-78817924 | MS.gene73250:intron | 35.0% | |
| ATGTGAATTTCTTCCACCAT+TGG | - | chr4.1:78819425-78819444 | None:intergenic | 35.0% | |
| ATGTGTGATGTTGGAAATCT+TGG | + | chr4.1:78815174-78815193 | MS.gene73250:CDS | 35.0% | |
| ATTAACACAAGTTTCACACG+AGG | - | chr4.1:78817567-78817586 | None:intergenic | 35.0% | |
| ATTCCTTAACCAATGCTCTT+AGG | + | chr4.1:78817803-78817822 | MS.gene73250:intron | 35.0% | |
| CAAGACAAAGTTTCTACTGA+TGG | + | chr4.1:78817780-78817799 | MS.gene73250:intron | 35.0% | |
| CATCAGTAGAAACTTTGTCT+TGG | - | chr4.1:78817782-78817801 | None:intergenic | 35.0% | |
| CCAATTAAATATGCACCACT+AGG | - | chr4.1:78817019-78817038 | None:intergenic | 35.0% | |
| CCTAGTGGTGCATATTTAAT+TGG | + | chr4.1:78817016-78817035 | MS.gene73250:intron | 35.0% | |
| CTTTCACTATTGCCAAATCT+TGG | - | chr4.1:78818480-78818499 | None:intergenic | 35.0% | |
| GCAAATCATCCCTACAAATT+GGG | - | chr4.1:78816032-78816051 | None:intergenic | 35.0% | |
| GGTTCATAAATGCAAGAGTA+AGG | + | chr4.1:78819390-78819409 | MS.gene73250:CDS | 35.0% | |
| TAAATGCAAGAGTAAGGCTT+TGG | + | chr4.1:78819396-78819415 | MS.gene73250:CDS | 35.0% | |
| TACTTTAACCAATGCCCTAA+GGG | - | chr4.1:78817704-78817723 | None:intergenic | 35.0% | |
| TATAGAACATAGTTCGTCGA+GGG | - | chr4.1:78818123-78818142 | None:intergenic | 35.0% | |
| TCACTTATAATTAGGGCATG+AGG | - | chr4.1:78816484-78816503 | None:intergenic | 35.0% | |
| TGACTCCTAATTGGTATGTT+AGG | - | chr4.1:78819620-78819639 | None:intergenic | 35.0% | |
| TTATCGAGATAAAGCTTACC+TGG | - | chr4.1:78819267-78819286 | None:intergenic | 35.0% | |
| TTGAGTGAAGAAGATCCATT+TGG | + | chr4.1:78815264-78815283 | MS.gene73250:CDS | 35.0% | |
| TTGGAAGAGATGTAATTGGT+GGG | + | chr4.1:78819912-78819931 | MS.gene73250:intron | 35.0% | |
| TTGTAGAAATGTACTGCAGA+AGG | + | chr4.1:78817436-78817455 | MS.gene73250:intron | 35.0% | |
| TTGTGTATCAGGTGTCAAAT+TGG | + | chr4.1:78819369-78819388 | MS.gene73250:intron | 35.0% | |
| TTTATCGCCAAACTTGCATA+AGG | - | chr4.1:78818354-78818373 | None:intergenic | 35.0% | |
| TTTGGAAGAGATGTAATTGG+TGG | + | chr4.1:78819911-78819930 | MS.gene73250:intron | 35.0% | |
| ! | AATCAATGTCCTAAGAGCAT+TGG | - | chr4.1:78817815-78817834 | None:intergenic | 35.0% |
| ! | AGTAATGTGTCATTGACACT+AGG | + | chr4.1:78819755-78819774 | MS.gene73250:CDS | 35.0% |
| ! | AGTCTACCTTTTCAACATGT+AGG | + | chr4.1:78819674-78819693 | MS.gene73250:CDS | 35.0% |
| ! | ATTGTTGACTATGCTTGATG+AGG | + | chr4.1:78815308-78815327 | MS.gene73250:CDS | 35.0% |
| !! | GAAACTAGAGAAGTATCTGA+AGG | - | chr4.1:78819530-78819549 | None:intergenic | 35.0% |
| !! | GATTGGCCTTTATGTAAGAT+TGG | + | chr4.1:78816366-78816385 | MS.gene73250:intron | 35.0% |
| !! | TACCTTGAAGGAACTTGTTA+AGG | - | chr4.1:78816745-78816764 | None:intergenic | 35.0% |
| !! | TGCTGATTCTTCTTTGATGA+TGG | + | chr4.1:78815224-78815243 | MS.gene73250:CDS | 35.0% |
| !!! | GAACTTGTTAAGGTGCTTTT+GGG | - | chr4.1:78816735-78816754 | None:intergenic | 35.0% |
| AACAAACGTTCTCCTTGAAG+TGG | - | chr4.1:78817859-78817878 | None:intergenic | 40.0% | |
| AACAGGTTTATAAGCGGTAC+AGG | + | chr4.1:78818259-78818278 | MS.gene73250:intron | 40.0% | |
| AATCGTTGAGCTGCACTTAA+AGG | - | chr4.1:78819821-78819840 | None:intergenic | 40.0% | |
| AATTGTAATCGCAATGACCG+TGG | + | chr4.1:78819114-78819133 | MS.gene73250:intron | 40.0% | |
| ATAGAACATAGTTCGTCGAG+GGG | - | chr4.1:78818122-78818141 | None:intergenic | 40.0% | |
| ATCTTGGAGATTCTTCCTTC+CGG | - | chr4.1:78818464-78818483 | None:intergenic | 40.0% | |
| ATTGTGTATGTCATGGCTTG+TGG | + | chr4.1:78817135-78817154 | MS.gene73250:intron | 40.0% | |
| CAAACTTGACACATCTATGC+TGG | + | chr4.1:78818725-78818744 | MS.gene73250:intron | 40.0% | |
| CACCTTAACAAGTTCCTTCA+AGG | + | chr4.1:78816740-78816759 | MS.gene73250:intron | 40.0% | |
| CCAACACCTACATGTTGAAA+AGG | - | chr4.1:78819683-78819702 | None:intergenic | 40.0% | |
| CGGAGGTAGTACTATATTGA+AGG | + | chr4.1:78816242-78816261 | MS.gene73250:intron | 40.0% | |
| GACAATGATCGACACATTCA+AGG | + | chr4.1:78819005-78819024 | MS.gene73250:intron | 40.0% | |
| GACTATGTCACCCAATTTGT+AGG | + | chr4.1:78816019-78816038 | MS.gene73250:intron | 40.0% | |
| GATGTGTCAAGTTTGAGCAA+TGG | - | chr4.1:78818720-78818739 | None:intergenic | 40.0% | |
| GGCCTTGAAACCAATAATGA+AGG | + | chr4.1:78819848-78819867 | MS.gene73250:CDS | 40.0% | |
| GTATAGAACATAGTTCGTCG+AGG | - | chr4.1:78818124-78818143 | None:intergenic | 40.0% | |
| GTTAGTGGTAGGCTAACATA+AGG | + | chr4.1:78815721-78815740 | MS.gene73250:intron | 40.0% | |
| TAGTTCTTGAATGTGTACGG+CGG | + | chr4.1:78818773-78818792 | MS.gene73250:intron | 40.0% | |
| TGAGCTGCACTTAAAGGAAA+TGG | - | chr4.1:78819815-78819834 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr4.1:78816225-78816244 | MS.gene73250:intron | 40.0% | |
| TGTTGTCCTTGACTCCTAAT+TGG | - | chr4.1:78819629-78819648 | None:intergenic | 40.0% | |
| TTAAGTGCAGCTCAACGATT+TGG | + | chr4.1:78819821-78819840 | MS.gene73250:CDS | 40.0% | |
| TTATTGCGACCATCACCAAA+TGG | - | chr4.1:78815282-78815301 | None:intergenic | 40.0% | |
| TTTGGCAATAGTGAAAGAGG+AGG | + | chr4.1:78818483-78818502 | MS.gene73250:CDS | 40.0% | |
| ! | AAGTTTCACACGAGGCTTTT+AGG | - | chr4.1:78817559-78817578 | None:intergenic | 40.0% |
| ! | ACGAGGCTTTTAGGCTAAAA+TGG | - | chr4.1:78817550-78817569 | None:intergenic | 40.0% |
| ! | CCTTTTCAACATGTAGGTGT+TGG | + | chr4.1:78819680-78819699 | MS.gene73250:CDS | 40.0% |
| ! | CTCATTTTCACACAAGCAAC+CGG | + | chr4.1:78818442-78818461 | MS.gene73250:CDS | 40.0% |
| ! | GAAGAAGATCCATTTGGTGA+TGG | + | chr4.1:78815270-78815289 | MS.gene73250:CDS | 40.0% |
| ! | GGAATGAACATTGTTGGTAG+TGG | + | chr4.1:78819701-78819720 | MS.gene73250:CDS | 40.0% |
| ! | GGTGTTGGAATGAACATTGT+TGG | + | chr4.1:78819695-78819714 | MS.gene73250:CDS | 40.0% |
| ! | TGTCGATGTAGATGGATTCT+CGG | - | chr4.1:78819552-78819571 | None:intergenic | 40.0% |
| !! | AGTAAGGCTTTGGAAACCAA+TGG | + | chr4.1:78819406-78819425 | MS.gene73250:CDS | 40.0% |
| !! | GTTGGAAATCTTGGTGTTTG+TGG | + | chr4.1:78815183-78815202 | MS.gene73250:CDS | 40.0% |
| !! | GTTGGTAGTGGAAGCAATAA+TGG | + | chr4.1:78819713-78819732 | MS.gene73250:CDS | 40.0% |
| !! | TATATTGTGATGGATGGCCT+CGG | + | chr4.1:78815896-78815915 | MS.gene73250:intron | 40.0% |
| !! | TCTTGGTGTTTGTGGTGATA+AGG | + | chr4.1:78815191-78815210 | MS.gene73250:CDS | 40.0% |
| !! | TGTCCTAAGAGCATTGGTTA+AGG | - | chr4.1:78817809-78817828 | None:intergenic | 40.0% |
| !!! | CACTGCATGTGCTTTTTCTT+CGG | + | chr4.1:78817368-78817387 | MS.gene73250:intron | 40.0% |
| !!! | GGAACTTGTTAAGGTGCTTT+TGG | - | chr4.1:78816736-78816755 | None:intergenic | 40.0% |
| !!! | TGATTTTGAAGTCACCACCA+CGG | - | chr4.1:78819134-78819153 | None:intergenic | 40.0% |
| AAAGCCAATTGAGTTCACCG+AGG | - | chr4.1:78815916-78815935 | None:intergenic | 45.0% | |
| AATGCTAATGAGCGCCCTTA+GGG | + | chr4.1:78817687-78817706 | MS.gene73250:intron | 45.0% | |
| ACACATCATTCACCGGTGAA+GGG | + | chr4.1:78817912-78817931 | MS.gene73250:intron | 45.0% | |
| AGTTCTTGAATGTGTACGGC+GGG | + | chr4.1:78818774-78818793 | MS.gene73250:intron | 45.0% | |
| ATCAGTAGGATAGCTGCACA+GGG | - | chr4.1:78819200-78819219 | None:intergenic | 45.0% | |
| CATAAGGAGCTGCATTGTTG+AGG | - | chr4.1:78818338-78818357 | None:intergenic | 45.0% | |
| CTGTGACTGTTCTTAGAGCT+TGG | + | chr4.1:78818583-78818602 | MS.gene73250:CDS | 45.0% | |
| GCTCAAGATAACCTGACCTA+TGG | - | chr4.1:78818518-78818537 | None:intergenic | 45.0% | |
| TAACCTGACCTATGGCTGTA+AGG | - | chr4.1:78818510-78818529 | None:intergenic | 45.0% | |
| TACACATCATTCACCGGTGA+AGG | + | chr4.1:78817911-78817930 | MS.gene73250:intron | 45.0% | |
| TACTTATTATCCGTCGGTCC+TGG | + | chr4.1:78818141-78818160 | MS.gene73250:intron | 45.0% | |
| TATCAGTAGGATAGCTGCAC+AGG | - | chr4.1:78819201-78819220 | None:intergenic | 45.0% | |
| TGCAGCTCCTTATGCAAGTT+TGG | + | chr4.1:78818344-78818363 | MS.gene73250:CDS | 45.0% | |
| TGCTTATAGTTGTGACCGGA+GGG | + | chr4.1:78816886-78816905 | MS.gene73250:intron | 45.0% | |
| TTACGACCGATTGCATCTGT+TGG | - | chr4.1:78818293-78818312 | None:intergenic | 45.0% | |
| TTGAGCAGCAACAACCTGTA+TGG | + | chr4.1:78818532-78818551 | MS.gene73250:CDS | 45.0% | |
| TTGCTTATAGTTGTGACCGG+AGG | + | chr4.1:78816885-78816904 | MS.gene73250:intron | 45.0% | |
| ! | TGTTTGTGTCGGTGCTTCAT+AGG | + | chr4.1:78818164-78818183 | MS.gene73250:intron | 45.0% |
| ! | TTTTCACACAAGCAACCGGA+AGG | + | chr4.1:78818446-78818465 | MS.gene73250:CDS | 45.0% |
| !! | AAGGCTTTGGAAACCAATGG+TGG | + | chr4.1:78819409-78819428 | MS.gene73250:CDS | 45.0% |
| !!! | GCATGTGCTTTTTCTTCGGT+TGG | + | chr4.1:78817372-78817391 | MS.gene73250:intron | 45.0% |
| !! | AAAAATCATAAAAAATAAAA+TGG | + | chr4.1:78816991-78817010 | MS.gene73250:intron | 5.0% |
| !!! | TATTTTTTTTATTCTTTAAA+TGG | + | chr4.1:78816706-78816725 | MS.gene73250:intron | 5.0% |
| AAGAACAGTCACAGCACGCT+CGG | - | chr4.1:78818577-78818596 | None:intergenic | 50.0% | |
| AAGTTATACTCCCTCCGTCC+CGG | + | chr4.1:78816055-78816074 | MS.gene73250:intron | 50.0% | |
| ATGGCCTCGGTGAACTCAAT+TGG | + | chr4.1:78815909-78815928 | MS.gene73250:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr4.1:78816072-78816091 | None:intergenic | 50.0% | |
| ATTTACGGCGCGCTTGTAAG+TGG | - | chr4.1:78819591-78819610 | None:intergenic | 50.0% | |
| CTTGAACAAGGACCCTTCAC+CGG | - | chr4.1:78817927-78817946 | None:intergenic | 50.0% | |
| GAATGCTAATGAGCGCCCTT+AGG | + | chr4.1:78817686-78817705 | MS.gene73250:intron | 50.0% | |
| TGTAATCGCAATGACCGTGG+TGG | + | chr4.1:78819117-78819136 | MS.gene73250:intron | 50.0% | |
| ! | GACTAGAGGGTGTACCTTGA+AGG | - | chr4.1:78816757-78816776 | None:intergenic | 50.0% |
| !! | GATCACGGTCGTGTTGCTTT+AGG | + | chr4.1:78819066-78819085 | MS.gene73250:intron | 50.0% |
| !! | GCAGCTCAACGATTTGGTCT+TGG | + | chr4.1:78819827-78819846 | MS.gene73250:CDS | 50.0% |
| AATGAGCGCCCTTAGGGCAT+TGG | + | chr4.1:78817693-78817712 | MS.gene73250:intron | 55.0% | |
| AGAACAGTCACAGCACGCTC+GGG | - | chr4.1:78818576-78818595 | None:intergenic | 55.0% | |
| AGGAGCTGCATTGTTGAGGC+CGG | - | chr4.1:78818334-78818353 | None:intergenic | 55.0% | |
| CCTGTATGGCGACCTCAAAG+AGG | + | chr4.1:78818546-78818565 | MS.gene73250:CDS | 55.0% | |
| GACACAAACACCAGGACCGA+CGG | - | chr4.1:78818154-78818173 | None:intergenic | 55.0% | |
| GAGGAGGACCTTACAGCCAT+AGG | + | chr4.1:78818499-78818518 | MS.gene73250:CDS | 55.0% | |
| GGACCTTACAGCCATAGGTC+AGG | + | chr4.1:78818504-78818523 | MS.gene73250:CDS | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr4.1:78816068-78816087 | None:intergenic | 55.0% | |
| GTCGGTCCTGGTGTTTGTGT+CGG | + | chr4.1:78818153-78818172 | MS.gene73250:intron | 55.0% | |
| TACCTGGCTACGCGATAGAC+CGG | - | chr4.1:78819251-78819270 | None:intergenic | 55.0% | |
| TTGCTCACGTGTACACCCTC+CGG | - | chr4.1:78816904-78816923 | None:intergenic | 55.0% | |
| !! | CCTCTTTGAGGTCGCCATAC+AGG | - | chr4.1:78818549-78818568 | None:intergenic | 55.0% |
| !! | GAAGCACCGACACAAACACC+AGG | - | chr4.1:78818162-78818181 | None:intergenic | 55.0% |
| AACCGGTCTATCGCGTAGCC+AGG | + | chr4.1:78819246-78819265 | MS.gene73250:CDS | 60.0% | |
| GAACAGTCACAGCACGCTCG+GGG | - | chr4.1:78818575-78818594 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr4.1:78816069-78816088 | None:intergenic | 60.0% | |
| CGCTCGGGGAGTCCTCTTTG+AGG | - | chr4.1:78818561-78818580 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 78815174 | 78819961 | 78815174 | ID=MS.gene73250 |
| chr4.1 | mRNA | 78815174 | 78819961 | 78815174 | ID=MS.gene73250.t1;Parent=MS.gene73250 |
| chr4.1 | exon | 78815174 | 78815329 | 78815174 | ID=MS.gene73250.t1.exon1;Parent=MS.gene73250.t1 |
| chr4.1 | CDS | 78815174 | 78815329 | 78815174 | ID=cds.MS.gene73250.t1;Parent=MS.gene73250.t1 |
| chr4.1 | exon | 78818264 | 78818628 | 78818264 | ID=MS.gene73250.t1.exon2;Parent=MS.gene73250.t1 |
| chr4.1 | CDS | 78818264 | 78818628 | 78818264 | ID=cds.MS.gene73250.t1;Parent=MS.gene73250.t1 |
| chr4.1 | exon | 78819207 | 78819267 | 78819207 | ID=MS.gene73250.t1.exon3;Parent=MS.gene73250.t1 |
| chr4.1 | CDS | 78819207 | 78819267 | 78819207 | ID=cds.MS.gene73250.t1;Parent=MS.gene73250.t1 |
| chr4.1 | exon | 78819380 | 78819869 | 78819380 | ID=MS.gene73250.t1.exon4;Parent=MS.gene73250.t1 |
| chr4.1 | CDS | 78819380 | 78819869 | 78819380 | ID=cds.MS.gene73250.t1;Parent=MS.gene73250.t1 |
| chr4.1 | exon | 78819957 | 78819961 | 78819957 | ID=MS.gene73250.t1.exon5;Parent=MS.gene73250.t1 |
| chr4.1 | CDS | 78819957 | 78819961 | 78819957 | ID=cds.MS.gene73250.t1;Parent=MS.gene73250.t1 |
| Gene Sequence |
| Protein sequence |
