AlfalfaGEDB | MS.gene73745

M. sativa cultivar XinJiangDaYe / MS.gene73745

KEGG: -
GO: -
PFAM: PF05701.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73745.t1	XP_003624388.2	88.9	630	70	0	55	684	1	630	1.20E-250	875.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73745.t1	Q9C9N6	38.0	600	346	8	96	684	22	606	4.2e-55	217.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73745.t1	G7KV75	88.9	630	70	0	55	684	1	630	8.6e-251	875.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene73745	0.839759	1.31E-57	-1.69E-46
MS.gene049151	MS.gene73745	0.821706	3.50E-53	-1.69E-46
MS.gene049153	MS.gene73745	0.843136	1.69E-58	-1.69E-46
MS.gene049260	MS.gene73745	0.825821	3.80E-54	-1.69E-46
MS.gene049346	MS.gene73745	0.810695	1.01E-50	-1.69E-46
MS.gene049758	MS.gene73745	0.863468	2.44E-64	-1.69E-46
MS.gene049910	MS.gene73745	0.818835	1.59E-52	-1.69E-46
MS.gene050128	MS.gene73745	0.847541	1.08E-59	-1.69E-46
MS.gene050168	MS.gene73745	0.814066	1.86E-51	-1.69E-46
MS.gene050226	MS.gene73745	0.82163	3.65E-53	-1.69E-46

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73745.t1	MTR_7g082660	97.302	630	17	0	55	684	1	630	0.0	1207
MS.gene73745.t1	MTR_3g060660	28.727	644	394	17	66	681	31	637	8.48e-23	103
MS.gene73745.t1	MTR_3g060660	29.568	602	362	15	109	681	58	626	1.19e-22	103
MS.gene73745.t1	MTR_5g096080	27.496	651	399	18	65	679	29	642	4.54e-15	79.3
MS.gene73745.t1	MTR_3g007920	27.496	651	399	18	65	679	29	642	1.10e-12	71.6

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73745.t1	AT1G66840	40.444	586	313	9	109	678	35	600	4.00e-97	311
MS.gene73745.t1	AT1G66840	40.444	586	313	9	109	678	35	600	4.00e-97	311
MS.gene73745.t1	AT5G38150	39.229	571	315	8	110	675	33	576	3.82e-83	274
MS.gene73745.t1	AT5G55860	27.412	653	391	16	66	681	29	635	8.74e-21	97.4
MS.gene73745.t1	AT2G26570	25.845	503	328	11	109	582	204	690	5.06e-12	69.7
MS.gene73745.t1	AT2G26570	25.845	503	328	11	109	582	204	690	5.06e-12	69.7

Showing 1 to 6 of 6 entries

Previous1Next

Find 87 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCAACATGGTGCTA+TGG	0.555928	7.3:-25249857	MS.gene73745:CDS
AAAGAAAGTTATCCCGAATT+TGG	0.197738	7.3:-25248387	MS.gene73745:CDS
AAATCTCTCTTCTATGATTG+AGG	0.486372	7.3:-25249938	MS.gene73745:CDS
AACAACTGAAGCTTTAGCTT+TGG	0.339949	7.3:-25248882	MS.gene73745:CDS
AACATGGTGCTATGGTTGTA+AGG	0.493840	7.3:-25249849	MS.gene73745:CDS
AACCGTAAAGGAGGAACTTG+AGG	0.624780	7.3:-25249299	MS.gene73745:CDS
AACTCAGATGGACTTCGAGG+CGG	0.685948	7.3:-25250406	MS.gene73745:CDS
AAGAAGGGAAAAGGTCAACA+TGG	0.660376	7.3:-25249865	MS.gene73745:CDS
AAGATGGATGATACTAAAGT+TGG	0.511606	7.3:-25250516	MS.gene73745:CDS
AAGCAAATACCATACCTGAG+AGG	0.741253	7.3:+25250711	None:intergenic

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGTTATCCCGAATT+TGG	-	chr7.3:25251581-25251600	MS.gene73745:CDS	30.0%
AAATCTCTCTTCTATGATTG+AGG	-	chr7.3:25250030-25250049	MS.gene73745:CDS	30.0%
AAGATGGATGATACTAAAGT+TGG	-	chr7.3:25249452-25249471	MS.gene73745:CDS	30.0%
AATCCTTCACAAATAAGTGA+AGG	+	chr7.3:25248866-25248885	None:intergenic	30.0%
ACAGAAAATTAGATAGTGAC+AGG	-	chr7.3:25249086-25249105	MS.gene73745:CDS	30.0%
AGAAACAGATGAAGCTAAAA+TGG	-	chr7.3:25250942-25250961	MS.gene73745:intron	30.0%
ATATTGTGATTGTGCGATAT+CGG	-	chr7.3:25248839-25248858	MS.gene73745:CDS	30.0%
CACAGTTATTACAAACTACA+TGG	+	chr7.3:25248673-25248692	None:intergenic	30.0%
CGCACAATCACAATATTAAA+GGG	+	chr7.3:25248835-25248854	None:intergenic	30.0%
CTGAATAACTTTGCCAAATT+CGG	+	chr7.3:25251597-25251616	None:intergenic	30.0%

Showing 1 to 10 of 165 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	25248343	25251647	25248343	ID=MS.gene73745
chr7.3	mRNA	25248343	25251647	25248343	ID=MS.gene73745.t1;Parent=MS.gene73745
chr7.3	exon	25251578	25251647	25251578	ID=MS.gene73745.t1.exon1;Parent=MS.gene73745.t1
chr7.3	CDS	25251578	25251647	25251578	ID=cds.MS.gene73745.t1;Parent=MS.gene73745.t1
chr7.3	exon	25250726	25250805	25250726	ID=MS.gene73745.t1.exon2;Parent=MS.gene73745.t1
chr7.3	CDS	25250726	25250805	25250726	ID=cds.MS.gene73745.t1;Parent=MS.gene73745.t1
chr7.3	exon	25250395	25250547	25250395	ID=MS.gene73745.t1.exon3;Parent=MS.gene73745.t1
chr7.3	CDS	25250395	25250547	25250395	ID=cds.MS.gene73745.t1;Parent=MS.gene73745.t1
chr7.3	exon	25248343	25250094	25248343	ID=MS.gene73745.t1.exon4;Parent=MS.gene73745.t1
chr7.3	CDS	25248343	25250094	25248343	ID=cds.MS.gene73745.t1;Parent=MS.gene73745.t1

Gene Sequence

>MS.gene73745

ATGGGCGTCAATGCTAGCAACTGGCAATCTATTTTGCAATATGTCCAGTCTCATTGTAACAGGAACAATGGTATGCATCAAGCTCATAGAATGGTGTTGAGCGTGACCCTATATATGATCTGGAAGGAGAGGAATGATAAAAGATTTCAGAATTGTTACCGATCTGTTCAACAACTCCTTAACCAAATCAAAATTGATGCTTACATTAGAGGATTGCAATTCAAGAAGGTGCAAACTCTGATGAATCGGGTGCGAGGCTAATGTTTTTTTTTTTTTTTTGTTTGTTTTAGCTTAACTCTTGTGTCTTTGTTTAGTTGGTTCATGATTCCATGTAGTTTGTAATAACTGTGTTGGTTAATGAAAGTTATCTCTTTTTTTTTGGTACAAATGAAAGTTATCTCTATTTACAAAAAAACAAAAAAATGGTATATTTACAAAGATTAAATTTATATTTAAACCATAAATAAATGAATTAATTCTATTTCTTGCCCCTTTAATATTGTGATTGTGCGATATCGGTCCTTCACTTATTTGTGAAGGATTTTAATTCTTAGATGTAAGTTGATGTTCAAATAACTTTTATAAATTTTATTTTATTAAAGAGACACTAATTATCCCTTGTCACAAGTTACACTATTATCTTGAAGCAGACAAAGAAGTGAATTTAAAACCAAAAGTGGTCCTAAGCAAAAATTGAAAGATGAGAAAATTGGGACCTAAATATATATAAAGATAAAATCTATACAGAAAATTAGATAGTGACAGGTAGTGATGTGTCCAAAACCAGTCACAACCGGTCATTGATACTCCCTCCCTCTTCTTGTTACATCCCTACTTGTTAGGACATTTGAACTTAGAATTCTCAACCACATATTTTTATTTTTCATGTAACTATTCTCCAATCACAGTCTCAACCTCTCAGGTATGGTATTTGCTTCCTCTATATTATTTATCACTGTTACAATATCTCAAAGTAGATAGACAACAATCATTAGCTTTATGTTAATTTTGTAGTGTTGAATATGCTAATACAAGGTGATTGTTTTTAGGATAAAGTAGAAGTGATAATTTAATTATATTATTTAAATTCATTCCTTCAGTTTTGGCAAAAGATGGATGATACTAAAGTTGGTATGAGAAGAGTTAGATCAGTTAAAGATGTTATTAGTCTATATGATGATAGGAATCATAGGACTGCTGATAGTTCTTCATTGAAGAAAACTCAGATGGACTTCGAGGCGGATTTCTCAGCGGTAAGTTCAGCTTATTTCCACAAGCTTTCTAGGATAGTTTATGAAAACAACTTATAGCTTCCACAAGCTTTCTAGGATAGTTTATGAAAACAACTTATAGCACATGTGAAATCAAATTTTGACTTTGTTCTATCTTTTGTTATAGAAAGGTTATAGTAAGTGATTATGATATAAGTGATTAATTAAGTTTTTTATCTAAACAGAATCATCCAATATTGTATATGCATTATTATATTGTGGCATTCTTTTGTTAACATTTTCAGTTTTTTCTTTTTCTTTGTTTTCTTACATATTCTTCAGAACCCTACTTCAAGAACAAGAGAACTACACCAAGCTAGAAGAGACATTGGAAGGTACAAAGAGAGTAGATGGACAACAGAATCTGCAAAATCTCAAGCAGAATCTGAGCTTTCAAATGCTAAAAAGACAGCGAAAAATCTCTCTTCTATGATTGAGGAATCAAGTTACAAGGCTAAGGCGAAAATGAAGGACATAGAAGCACTAGAGAAGAAGGGAAAAGGTCAACATGGTGCTATGGTTGTAAGGAGGAATGAGAATTATGAGTATGCACAAGTGATGAGAGAATTGGAATATCTCAAAAAGGAATTGTTTAAGCTAAAGCTTGAAGTGGCTTCTGTTTTGCAAGAGAAATCGCGGGCCGAGAAAGAAATCGAAGCATCAAGCTCGAAGATGATCGATTGTTCAAGAAAAGAAGAAGTACTTAGGAAAGAGATTGAAGAAGCCAATGAAGAACAAGTACTTGCTGAATTGGCCAGGATTGAGGCTTTGAAAGAGTTAGAGGATATTAGAGTTCAAAGAGAAAGAGAGGCAAATGAGTTTTCATTCAAATTGGAAAACACAAGAAAAAAGTTGAAGGAGGCCACAAAAGAGATAGAAAAATCAAAGGAACTTGAAATGAAATTAGCTATGACAGTTTCAGATGTTGATCTGTTGCAGATTCAATTGAATTTGGTCAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAAAGTGTGAAACTGTTGGAAGGAAGTTTAAGAAAGGGTGACGAATCAGGAGACTCTACCGAGTTACAAACCGTAAAGGAGGAACTTGAGGCGGCAACGAAAGAATTAGCTTTGATTAGAGATGAAGGTTTTCAGTTTATGGCTTCTATGGATGTTATAAGAAACGAGCTGAAGCATGTAACTAAGGAAATAGCTCGCTTGAAGAAAAACGATTCATCGGTTCAAAATCTCAATTCAAAGGTTCTAAGAACAAAATCTAAGCTAGAAGCCGCATCTGCTGCAGAGGAAAAAGCAAGATCATTAGTAATTAGTCTATCTCATTCTCTTGAGACTCTGAAGAAAGAAACAGATGAAGCTAAAATGGAAAAAGAGCTCATATCTCAAGATATTATAACAACTACGTTGGAAATTGAAAAAACTGAGTTTGAGATTGATACGAGTGAGGAAAAATTGCAAGGTGTTATGAAAGAGTTAGAAGAAGCAAAAACAACTGAAGCTTTAGCTTTGGAGAAGCTTAAAACACTTTCTGAGACAACCATGAAAGAAAGAGCTTTAACAGCAAAACATAGTTCATCGATTACTATCTCCAAATTTGAATACGAGTATCTAACTAATCATGCAGCTGCAGCAGAAGAACTTGCTGATAAAAAAGTTGCGGCAGCTGAGGCATGGATTGAAGCGCTCAAGGCGAGTGAGAAGGAAATACTACTGGAAACAAAAATAGTTCAAAGAGAACTCAAAGAAAACATTTTGAAGGAAGAGAGGGAGGTTTACATCAAAGAGAAGATGGCTGCAAGAAGAGTTAGTAGTGAGGAGTTTGATAGAACAAGAAAACGCGAGAAGGGTTCGTCGCAGAGAGCTATTTCTAGAAAGAGTATTAAATCAAATGGAAGTATGACTCCTGCTAAAAGAATCAAGTTTCAGAAGTCTGCTGCTTCACCCGCACCTCGGCACATTAGTCCTTTCACTCTTAAGAAGAGAAAGAAAGTTATCCCGAATTTGGCAAAGTTATTCAGTAGCAAGAAAAACACTATGCCTAAAGAGTAA

Protein sequence

>MS.gene73745.t1

MGVNASNWQSILQYVQSHCNRNNGHLNLEFSTTYFYFSCNYSPITVSTSQFWQKMDDTKVGMRRVRSVKDVISLYDDRNHRTADSSSLKKTQMDFEADFSANPTSRTRELHQARRDIGRYKESRWTTESAKSQAESELSNAKKTAKNLSSMIEESSYKAKAKMKDIEALEKKGKGQHGAMVVRRNENYEYAQVMRELEYLKKELFKLKLEVASVLQEKSRAEKEIEASSSKMIDCSRKEEVLRKEIEEANEEQVLAELARIEALKELEDIRVQREREANEFSFKLENTRKKLKEATKEIEKSKELEMKLAMTVSDVDLLQIQLNLVKEMEKRVQGDESVKLLEGSLRKGDESGDSTELQTVKEELEAATKELALIRDEGFQFMASMDVIRNELKHVTKEIARLKKNDSSVQNLNSKVLRTKSKLEAASAAEEKARSLVISLSHSLETLKKETDEAKMEKELISQDIITTTLEIEKTEFEIDTSEEKLQGVMKELEEAKTTEALALEKLKTLSETTMKERALTAKHSSSITISKFEYEYLTNHAAAAEELADKKVAAAEAWIEALKASEKEILLETKIVQRELKENILKEEREVYIKEKMAARRVSSEEFDRTRKREKGSSQRAISRKSIKSNGSMTPAKRIKFQKSAASPAPRHISPFTLKKRKKVIPNLAKLFSSKKNTMPKE