Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82568.t1 | RHN52802.1 | 99.5 | 214 | 1 | 0 | 1 | 214 | 313 | 526 | 5.40E-117 | 430.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82568.t1 | A0A396HHI6 | 99.5 | 214 | 1 | 0 | 1 | 214 | 313 | 526 | 3.9e-117 | 430.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene82568 | 0.846209 | 2.51E-59 | -1.69E-46 |
| MS.gene049159 | MS.gene82568 | 0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene04918 | MS.gene82568 | 0.832734 | 7.98E-56 | -1.69E-46 |
| MS.gene04920 | MS.gene82568 | 0.804232 | 2.38E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene82568 | 0.838645 | 2.54E-57 | -1.69E-46 |
| MS.gene049350 | MS.gene82568 | 0.831624 | 1.50E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene82568 | 0.841468 | 4.67E-58 | -1.69E-46 |
| MS.gene049452 | MS.gene82568 | 0.816729 | 4.76E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene82568 | 0.820092 | 8.23E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene82568 | 0.842322 | 2.78E-58 | -1.69E-46 |
| MS.gene049821 | MS.gene82568 | 0.802831 | 4.65E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene82568 | 0.816047 | 6.76E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene82568 | 0.853924 | 1.73E-61 | -1.69E-46 |
| MS.gene050026 | MS.gene82568 | 0.825326 | 4.98E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene82568 | 0.811558 | 6.59E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene82568 | 0.806515 | 7.92E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene82568 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene82568 | 0.812828 | 3.48E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene82568 | 0.802021 | 6.84E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene82568 | 0.806423 | 8.29E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene82568 | 0.82707 | 1.92E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene82568 | 0.834967 | 2.21E-56 | -1.69E-46 |
| MS.gene051332 | MS.gene82568 | 0.829841 | 4.11E-55 | -1.69E-46 |
| MS.gene051594 | MS.gene82568 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene051676 | MS.gene82568 | 0.814561 | 1.45E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene82568 | 0.804759 | 1.85E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene82568 | 0.838891 | 2.20E-57 | -1.69E-46 |
| MS.gene051720 | MS.gene82568 | 0.833201 | 6.11E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene82568 | 0.822958 | 1.79E-53 | -1.69E-46 |
| MS.gene051800 | MS.gene82568 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene051957 | MS.gene82568 | 0.833163 | 6.24E-56 | -1.69E-46 |
| MS.gene052016 | MS.gene82568 | 0.809758 | 1.62E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene82568 | 0.858579 | 7.48E-63 | -1.69E-46 |
| MS.gene052516 | MS.gene82568 | 0.809891 | 1.51E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene82568 | 0.814605 | 1.41E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene82568 | 0.861436 | 1.03E-63 | -1.69E-46 |
| MS.gene052534 | MS.gene82568 | 0.817416 | 3.33E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene82568 | 0.835201 | 1.93E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene82568 | 0.824765 | 6.76E-54 | -1.69E-46 |
| MS.gene052685 | MS.gene82568 | 0.809286 | 2.04E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene82568 | 0.822463 | 2.34E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene82568 | 0.823947 | 1.05E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene82568 | 0.808754 | 2.65E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene82568 | 0.820314 | 7.32E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene82568 | 0.851552 | 8.24E-61 | -1.69E-46 |
| MS.gene053321 | MS.gene82568 | 0.820702 | 5.97E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene82568 | 0.804947 | 1.69E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene82568 | 0.802891 | 4.52E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene82568 | 0.808209 | 3.46E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene82568 | 0.809103 | 2.23E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene82568 | 0.830367 | 3.06E-55 | -1.69E-46 |
| MS.gene05423 | MS.gene82568 | 0.857018 | 2.17E-62 | -1.69E-46 |
| MS.gene054291 | MS.gene82568 | -0.802701 | 4.95E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene82568 | 0.809749 | 1.62E-50 | -1.69E-46 |
| MS.gene054489 | MS.gene82568 | 0.806218 | 9.15E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene82568 | 0.882906 | 7.03E-71 | -1.69E-46 |
| MS.gene054651 | MS.gene82568 | 0.861259 | 1.16E-63 | -1.69E-46 |
| MS.gene054775 | MS.gene82568 | 0.862819 | 3.87E-64 | -1.69E-46 |
| MS.gene054991 | MS.gene82568 | 0.826774 | 2.26E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene82568 | 0.80012 | 1.67E-48 | -1.69E-46 |
| MS.gene055227 | MS.gene82568 | 0.801038 | 1.09E-48 | -1.69E-46 |
| MS.gene055228 | MS.gene82568 | 0.820116 | 8.13E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene82568 | 0.815144 | 1.07E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene82568 | 0.83149 | 1.62E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene82568 | 0.819518 | 1.11E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene82568 | 0.827829 | 1.26E-54 | -1.69E-46 |
| MS.gene055586 | MS.gene82568 | 0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene82568 | 0.806847 | 6.74E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene82568 | 0.828987 | 6.62E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene82568 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene055926 | MS.gene82568 | 0.845138 | 4.90E-59 | -1.69E-46 |
| MS.gene056050 | MS.gene82568 | 0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene82568 | 0.82027 | 7.50E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene82568 | 0.829464 | 5.07E-55 | -1.69E-46 |
| MS.gene056215 | MS.gene82568 | 0.820007 | 8.61E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene82568 | 0.800767 | 1.23E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene82568 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene82568 | 0.809536 | 1.80E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene82568 | 0.80193 | 7.14E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene82568 | 0.832448 | 9.40E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene82568 | 0.855187 | 7.47E-62 | -1.69E-46 |
| MS.gene05690 | MS.gene82568 | 0.851435 | 8.89E-61 | -1.69E-46 |
| MS.gene057026 | MS.gene82568 | 0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene82568 | 0.820042 | 8.45E-53 | -1.69E-46 |
| MS.gene057132 | MS.gene82568 | 0.802229 | 6.20E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene82568 | 0.838079 | 3.56E-57 | -1.69E-46 |
| MS.gene057294 | MS.gene82568 | 0.816101 | 6.58E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene82568 | 0.82054 | 6.50E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene82568 | 0.812701 | 3.71E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene82568 | 0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene057921 | MS.gene82568 | 0.805044 | 1.61E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene82568 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene82568 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene058279 | MS.gene82568 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene82568 | 0.810101 | 1.36E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene82568 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene82568 | 0.850167 | 2.02E-60 | -1.69E-46 |
| MS.gene058781 | MS.gene82568 | 0.813699 | 2.24E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene82568 | 0.831747 | 1.40E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene82568 | 0.838523 | 2.73E-57 | -1.69E-46 |
| MS.gene05897 | MS.gene82568 | 0.836259 | 1.04E-56 | -1.69E-46 |
| MS.gene059272 | MS.gene82568 | 0.811717 | 6.09E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene82568 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene82568 | 0.825511 | 4.50E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene82568 | 0.863356 | 2.64E-64 | -1.69E-46 |
| MS.gene059842 | MS.gene82568 | 0.821503 | 3.90E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene82568 | -0.801837 | 7.46E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene82568 | 0.804824 | 1.79E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene82568 | 0.801319 | 9.53E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene82568 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene82568 | 0.820922 | 5.31E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene82568 | 0.842983 | 1.85E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene82568 | 0.844187 | 8.83E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene82568 | 0.816365 | 5.74E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene82568 | 0.812194 | 4.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82568.t1 | MTR_6g084440 | 99.526 | 211 | 1 | 0 | 1 | 211 | 313 | 523 | 1.78e-156 | 446 |
| MS.gene82568.t1 | MTR_6g084440 | 98.578 | 211 | 1 | 1 | 1 | 211 | 313 | 521 | 2.53e-153 | 438 |
| MS.gene82568.t1 | MTR_8g104270 | 75.814 | 215 | 46 | 3 | 2 | 211 | 268 | 481 | 2.08e-103 | 309 |
| MS.gene82568.t1 | MTR_4g005350 | 40.722 | 194 | 99 | 5 | 1 | 180 | 129 | 320 | 6.03e-35 | 128 |
| MS.gene82568.t1 | MTR_7g010160 | 35.583 | 163 | 98 | 4 | 51 | 208 | 496 | 656 | 3.54e-19 | 85.5 |
| MS.gene82568.t1 | MTR_5g040600 | 30.220 | 182 | 102 | 6 | 12 | 179 | 622 | 792 | 1.42e-16 | 78.2 |
| MS.gene82568.t1 | MTR_8g467380 | 30.435 | 161 | 105 | 3 | 53 | 208 | 587 | 745 | 6.68e-14 | 70.5 |
| MS.gene82568.t1 | MTR_8g467390 | 29.008 | 131 | 88 | 3 | 53 | 179 | 206 | 335 | 1.60e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82568.t1 | AT1G73850 | 63.063 | 222 | 65 | 4 | 1 | 205 | 325 | 546 | 3.96e-87 | 270 |
| MS.gene82568.t1 | AT1G73850 | 63.063 | 222 | 65 | 4 | 1 | 205 | 325 | 546 | 3.96e-87 | 270 |
| MS.gene82568.t1 | AT3G20260 | 39.698 | 199 | 99 | 6 | 1 | 181 | 131 | 326 | 3.04e-31 | 118 |
| MS.gene82568.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 53 | 178 | 349 | 481 | 4.31e-18 | 82.4 |
| MS.gene82568.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 53 | 178 | 349 | 481 | 4.31e-18 | 82.4 |
| MS.gene82568.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 53 | 178 | 349 | 481 | 4.31e-18 | 82.4 |
| MS.gene82568.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 53 | 178 | 349 | 481 | 4.44e-18 | 82.4 |
| MS.gene82568.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 53 | 178 | 349 | 481 | 4.89e-18 | 82.4 |
| MS.gene82568.t1 | AT1G69610 | 33.846 | 130 | 82 | 3 | 53 | 180 | 346 | 473 | 1.24e-15 | 75.5 |
| MS.gene82568.t1 | AT1G69610 | 33.846 | 130 | 82 | 3 | 53 | 180 | 391 | 518 | 1.62e-15 | 75.1 |
| MS.gene82568.t1 | AT1G69610 | 33.846 | 130 | 82 | 3 | 53 | 180 | 390 | 517 | 1.64e-15 | 75.1 |
Find 40 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACATGGGAAGCACTTAAT+TGG | 0.198782 | 6.3:+78741403 | MS.gene82568:CDS |
| ATTCTTGTACCTCGATATTC+AGG | 0.218566 | 6.3:-78741615 | None:intergenic |
| GAGAATGAACCTTATGAATT+TGG | 0.221238 | 6.3:+78741534 | MS.gene82568:CDS |
| TCAGGGACTAGGAGCAATTT+TGG | 0.222327 | 6.3:-78741597 | None:intergenic |
| AGCTTCATTTCTTGTGATAA+TGG | 0.291025 | 6.3:+78742305 | MS.gene82568:CDS |
| GATGATCAGAAGGAGAATAT+TGG | 0.307291 | 6.3:+78742261 | MS.gene82568:CDS |
| GTAGCTCCAAGGTCAATTTC+AGG | 0.324497 | 6.3:+78741279 | MS.gene82568:CDS |
| GCAGCCTCCAATTCACAATA+TGG | 0.342594 | 6.3:-78741360 | None:intergenic |
| ATGATCAGAAGGAGAATATT+GGG | 0.345161 | 6.3:+78742262 | MS.gene82568:CDS |
| GGATTGTGACTTATATCTTC+TGG | 0.349354 | 6.3:-78741339 | None:intergenic |
| ATCAACATTTGATGCTCGTT+TGG | 0.350427 | 6.3:-78741445 | None:intergenic |
| AACTGTTGCGCAATTGTTGC+TGG | 0.354425 | 6.3:-78741477 | None:intergenic |
| GCACAAAAGCTTCATGAAAC+TGG | 0.382594 | 6.3:+78740563 | MS.gene82568:CDS |
| TCACAATCCATATTGTGAAT+TGG | 0.401197 | 6.3:+78741353 | MS.gene82568:CDS |
| AAGAAATGTCATTTCTAGAA+AGG | 0.415445 | 6.3:+78740534 | None:intergenic |
| TTTAAAAGACGGATTAATGT+TGG | 0.441489 | 6.3:-78742432 | None:intergenic |
| TTTAAAGAAAGTTAATCAAA+AGG | 0.445739 | 6.3:+78742449 | MS.gene82568:CDS |
| TTTCTTGTGATAATGGAAGA+TGG | 0.449843 | 6.3:+78742312 | MS.gene82568:CDS |
| CTCATTCTAGCATAAATCTC+TGG | 0.472752 | 6.3:-78741564 | None:intergenic |
| TTGCACAAATTTGCTTAACA+TGG | 0.498853 | 6.3:+78741388 | MS.gene82568:CDS |
| ATTCTCCCTGAAATTGACCT+TGG | 0.509048 | 6.3:-78741285 | None:intergenic |
| GGTCTCCTACCAAATTCATA+AGG | 0.517370 | 6.3:-78741543 | None:intergenic |
| GATTAACTTTCTTTAAAAGA+CGG | 0.520863 | 6.3:-78742443 | None:intergenic |
| CAATCCATATTGTGAATTGG+AGG | 0.524173 | 6.3:+78741356 | MS.gene82568:CDS |
| TCGTAGAAATCAAAGAGGCT+TGG | 0.527566 | 6.3:+78742404 | MS.gene82568:CDS |
| TTATGCTAGAATGAGACATA+TGG | 0.527586 | 6.3:+78741572 | MS.gene82568:CDS |
| TAGCTCCAAGGTCAATTTCA+GGG | 0.532390 | 6.3:+78741280 | MS.gene82568:CDS |
| TTCTTGTACCTCGATATTCA+GGG | 0.536989 | 6.3:-78741614 | None:intergenic |
| ATGAACCTTATGAATTTGGT+AGG | 0.537040 | 6.3:+78741538 | MS.gene82568:CDS |
| AGAATCAGATGATGATCAGA+AGG | 0.565291 | 6.3:+78742251 | MS.gene82568:intron |
| AACATTCATGAATTTCCTCA+AGG | 0.579977 | 6.3:+78742341 | MS.gene82568:CDS |
| CGAGCATCAAATGTTGATGT+TGG | 0.585634 | 6.3:+78741450 | MS.gene82568:CDS |
| TGCACAAATTTGCTTAACAT+GGG | 0.586140 | 6.3:+78741389 | MS.gene82568:CDS |
| GTTTCTCTTTATCAGCCTTG+AGG | 0.587313 | 6.3:-78742356 | None:intergenic |
| TTCTACGAAAGTAAGATGCA+AGG | 0.609967 | 6.3:-78742389 | None:intergenic |
| TACTTTCGTAGAAATCAAAG+AGG | 0.610424 | 6.3:+78742399 | MS.gene82568:CDS |
| TACCTCGATATTCAGGGACT+AGG | 0.612708 | 6.3:-78741608 | None:intergenic |
| GATCTATCAAAGTAGCTCCA+AGG | 0.637964 | 6.3:+78741268 | MS.gene82568:CDS |
| CTCCTAGTCCCTGAATATCG+AGG | 0.672700 | 6.3:+78741606 | MS.gene82568:CDS |
| TAAGATGCAAGGATCTGACA+TGG | 0.678566 | 6.3:-78742378 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTACTTAGATTATTAT+AGG | + | chr6.3:78741714-78741733 | MS.gene82568:intron | 10.0% |
| !! | AAATATCAGAAAATTAAGAA+AGG | - | chr6.3:78740600-78740619 | None:intergenic | 15.0% |
| !! | GAAGAAATAATATTATAATG+TGG | - | chr6.3:78740947-78740966 | None:intergenic | 15.0% |
| !! | TCTTCAAATATATTTGTATT+TGG | + | chr6.3:78740962-78740981 | MS.gene82568:intron | 15.0% |
| !! | TTTAAAGAAAGTTAATCAAA+AGG | + | chr6.3:78742449-78742468 | MS.gene82568:CDS | 15.0% |
| !! | AAAAATTGTAACTAAGTAGT+TGG | + | chr6.3:78741058-78741077 | MS.gene82568:intron | 20.0% |
| !! | AGCATTATTAAACAATTTGT+AGG | + | chr6.3:78741977-78741996 | MS.gene82568:intron | 20.0% |
| !! | ATTGCAAAACTATTTAATTG+TGG | - | chr6.3:78741891-78741910 | None:intergenic | 20.0% |
| !! | CATTATTAAACAATTTGTAG+GGG | + | chr6.3:78741979-78741998 | MS.gene82568:intron | 20.0% |
| !! | GCATTATTAAACAATTTGTA+GGG | + | chr6.3:78741978-78741997 | MS.gene82568:intron | 20.0% |
| !!! | ACAATTAAATAGTTTTGCAA+TGG | + | chr6.3:78741890-78741909 | MS.gene82568:intron | 20.0% |
| !!! | GATTAACTTTCTTTAAAAGA+CGG | - | chr6.3:78742446-78742465 | None:intergenic | 20.0% |
| ! | CTAACGTTCAAGATATATTA+TGG | + | chr6.3:78740692-78740711 | MS.gene82568:intron | 25.0% |
| ! | TCAATAATAGAGAATTTGAC+CGG | - | chr6.3:78740666-78740685 | None:intergenic | 25.0% |
| !!! | TAGATATGTGGTTTTTTGTT+TGG | + | chr6.3:78741831-78741850 | MS.gene82568:intron | 25.0% |
| !!! | TTTAAAAGACGGATTAATGT+TGG | - | chr6.3:78742435-78742454 | None:intergenic | 25.0% |
| AACATTCATGAATTTCCTCA+AGG | + | chr6.3:78742341-78742360 | MS.gene82568:CDS | 30.0% | |
| AGCTTCATTTCTTGTGATAA+TGG | + | chr6.3:78742305-78742324 | MS.gene82568:CDS | 30.0% | |
| ATATCTAGCAATCATGTTCT+TGG | - | chr6.3:78741818-78741837 | None:intergenic | 30.0% | |
| ATGAACCTTATGAATTTGGT+AGG | + | chr6.3:78741538-78741557 | MS.gene82568:CDS | 30.0% | |
| ATGATCAGAAGGAGAATATT+GGG | + | chr6.3:78742262-78742281 | MS.gene82568:CDS | 30.0% | |
| GAGAATGAACCTTATGAATT+TGG | + | chr6.3:78741534-78741553 | MS.gene82568:CDS | 30.0% | |
| TAATAATGCTTCACACTGAT+GGG | - | chr6.3:78741967-78741986 | None:intergenic | 30.0% | |
| TACTTTCGTAGAAATCAAAG+AGG | + | chr6.3:78742399-78742418 | MS.gene82568:CDS | 30.0% | |
| TCACAATCCATATTGTGAAT+TGG | + | chr6.3:78741353-78741372 | MS.gene82568:CDS | 30.0% | |
| TTAATAATGCTTCACACTGA+TGG | - | chr6.3:78741968-78741987 | None:intergenic | 30.0% | |
| TTATGCTAGAATGAGACATA+TGG | + | chr6.3:78741572-78741591 | MS.gene82568:CDS | 30.0% | |
| TTTATATATTGCCAACCCAT+TGG | + | chr6.3:78741923-78741942 | MS.gene82568:intron | 30.0% | |
| ! | TGCACAAATTTGCTTAACAT+GGG | + | chr6.3:78741389-78741408 | MS.gene82568:CDS | 30.0% |
| ! | TTGCACAAATTTGCTTAACA+TGG | + | chr6.3:78741388-78741407 | MS.gene82568:CDS | 30.0% |
| !! | TTTCTTGTGATAATGGAAGA+TGG | + | chr6.3:78742312-78742331 | MS.gene82568:CDS | 30.0% |
| !! | TTTTTGTTTGGAGGAAAAGA+TGG | + | chr6.3:78741843-78741862 | MS.gene82568:intron | 30.0% |
| !!! | ATATGTGGTTTTTTGTTTGG+AGG | + | chr6.3:78741834-78741853 | MS.gene82568:intron | 30.0% |
| AATAATGCTTCACACTGATG+GGG | - | chr6.3:78741966-78741985 | None:intergenic | 35.0% | |
| ACTTAAGAACGAAACTTCAG+GGG | + | chr6.3:78741103-78741122 | MS.gene82568:intron | 35.0% | |
| AGAATCAGATGATGATCAGA+AGG | + | chr6.3:78742251-78742270 | MS.gene82568:intron | 35.0% | |
| ATCAACATTTGATGCTCGTT+TGG | - | chr6.3:78741448-78741467 | None:intergenic | 35.0% | |
| ATTCTTGTACCTCGATATTC+AGG | - | chr6.3:78741618-78741637 | None:intergenic | 35.0% | |
| CAATCCATATTGTGAATTGG+AGG | + | chr6.3:78741356-78741375 | MS.gene82568:CDS | 35.0% | |
| CACTTAAGAACGAAACTTCA+GGG | + | chr6.3:78741102-78741121 | MS.gene82568:intron | 35.0% | |
| CTCATTCTAGCATAAATCTC+TGG | - | chr6.3:78741567-78741586 | None:intergenic | 35.0% | |
| GAACATGATTGCTAGATATG+TGG | + | chr6.3:78741819-78741838 | MS.gene82568:intron | 35.0% | |
| GATGATCAGAAGGAGAATAT+TGG | + | chr6.3:78742261-78742280 | MS.gene82568:CDS | 35.0% | |
| GGATTGTGACTTATATCTTC+TGG | - | chr6.3:78741342-78741361 | None:intergenic | 35.0% | |
| TCACTTAAGAACGAAACTTC+AGG | + | chr6.3:78741101-78741120 | MS.gene82568:intron | 35.0% | |
| TTAATAAGCCAAATCTCTCG+CGG | + | chr6.3:78740631-78740650 | MS.gene82568:intron | 35.0% | |
| TTCAACAACCGAAGTTTCAT+TGG | - | chr6.3:78740845-78740864 | None:intergenic | 35.0% | |
| TTCTACGAAAGTAAGATGCA+AGG | - | chr6.3:78742392-78742411 | None:intergenic | 35.0% | |
| TTCTTGTACCTCGATATTCA+GGG | - | chr6.3:78741617-78741636 | None:intergenic | 35.0% | |
| TTGTCTCTCCAATGAAACTT+CGG | + | chr6.3:78740834-78740853 | MS.gene82568:intron | 35.0% | |
| ! | TGTCGACAAGTTGAACATTA+TGG | - | chr6.3:78740800-78740819 | None:intergenic | 35.0% |
| ! | TTAATCCAACGACTGAGTTT+TGG | + | chr6.3:78740722-78740741 | MS.gene82568:intron | 35.0% |
| !! | TAACATGGGAAGCACTTAAT+TGG | + | chr6.3:78741403-78741422 | MS.gene82568:CDS | 35.0% |
| !!! | TTGAGAGTGTTTTATCTCGA+CGG | + | chr6.3:78740877-78740896 | MS.gene82568:intron | 35.0% |
| ATTCTCCCTGAAATTGACCT+TGG | - | chr6.3:78741288-78741307 | None:intergenic | 40.0% | |
| CGAGCATCAAATGTTGATGT+TGG | + | chr6.3:78741450-78741469 | MS.gene82568:CDS | 40.0% | |
| GATCTATCAAAGTAGCTCCA+AGG | + | chr6.3:78741268-78741287 | MS.gene82568:CDS | 40.0% | |
| GCACAAAAGCTTCATGAAAC+TGG | + | chr6.3:78740563-78740582 | MS.gene82568:CDS | 40.0% | |
| GGTCTCCTACCAAATTCATA+AGG | - | chr6.3:78741546-78741565 | None:intergenic | 40.0% | |
| GTTTCTCTTTATCAGCCTTG+AGG | - | chr6.3:78742359-78742378 | None:intergenic | 40.0% | |
| TAAGATGCAAGGATCTGACA+TGG | - | chr6.3:78742381-78742400 | None:intergenic | 40.0% | |
| TAGCTCCAAGGTCAATTTCA+GGG | + | chr6.3:78741280-78741299 | MS.gene82568:CDS | 40.0% | |
| TCGTAGAAATCAAAGAGGCT+TGG | + | chr6.3:78742404-78742423 | MS.gene82568:CDS | 40.0% | |
| ! | ATATTGCCAACCCATTGGTT+AGG | + | chr6.3:78741928-78741947 | MS.gene82568:intron | 40.0% |
| ! | TATTGCCAACCCATTGGTTA+GGG | + | chr6.3:78741929-78741948 | MS.gene82568:intron | 40.0% |
| AACTGTTGCGCAATTGTTGC+TGG | - | chr6.3:78741480-78741499 | None:intergenic | 45.0% | |
| ATGCATGGACCCTAACCAAT+GGG | - | chr6.3:78741941-78741960 | None:intergenic | 45.0% | |
| GAGAATTTGACCGGAGATTG+AGG | - | chr6.3:78740657-78740676 | None:intergenic | 45.0% | |
| GCAGCCTCCAATTCACAATA+TGG | - | chr6.3:78741363-78741382 | None:intergenic | 45.0% | |
| GTAGCTCCAAGGTCAATTTC+AGG | + | chr6.3:78741279-78741298 | MS.gene82568:CDS | 45.0% | |
| TACCTCGATATTCAGGGACT+AGG | - | chr6.3:78741611-78741630 | None:intergenic | 45.0% | |
| TATGCATGGACCCTAACCAA+TGG | - | chr6.3:78741942-78741961 | None:intergenic | 45.0% | |
| TATTGCCTCTCGAGTTTCTC+CGG | - | chr6.3:78740748-78740767 | None:intergenic | 45.0% | |
| ! | TCAGGGACTAGGAGCAATTT+TGG | - | chr6.3:78741600-78741619 | None:intergenic | 45.0% |
| !! | ACTAAGTAGTTGGCTTGAGC+TGG | + | chr6.3:78741068-78741087 | MS.gene82568:intron | 45.0% |
| !! | AAAAAAATTAGTTATTATTA+AGG | + | chr6.3:78741144-78741163 | MS.gene82568:intron | 5.0% |
| ATGGACCCTAACCAATGGGT+TGG | - | chr6.3:78741937-78741956 | None:intergenic | 50.0% | |
| CTCCTAGTCCCTGAATATCG+AGG | + | chr6.3:78741606-78741625 | MS.gene82568:CDS | 50.0% | |
| !! | TCCAACGACTGAGTTTTGGC+CGG | + | chr6.3:78740726-78740745 | MS.gene82568:intron | 50.0% |
| CACACTGATGGGGCTATGCA+TGG | - | chr6.3:78741956-78741975 | None:intergenic | 55.0% | |
| GATTGAGGCCGCGAGAGATT+TGG | - | chr6.3:78740642-78740661 | None:intergenic | 55.0% | |
| TCCGGCCAAAACTCAGTCGT+TGG | - | chr6.3:78740730-78740749 | None:intergenic | 55.0% | |
| TTTGGCCGGAGAAACTCGAG+AGG | + | chr6.3:78740740-78740759 | MS.gene82568:intron | 55.0% | |
| TCTCTCGCGGCCTCAATCTC+CGG | + | chr6.3:78740644-78740663 | MS.gene82568:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 78740539 | 78742482 | 78740539 | ID=MS.gene82568 |
| chr6.3 | mRNA | 78740539 | 78742482 | 78740539 | ID=MS.gene82568.t1;Parent=MS.gene82568 |
| chr6.3 | exon | 78740539 | 78740584 | 78740539 | ID=MS.gene82568.t1.exon1;Parent=MS.gene82568.t1 |
| chr6.3 | CDS | 78740539 | 78740584 | 78740539 | ID=cds.MS.gene82568.t1;Parent=MS.gene82568.t1 |
| chr6.3 | exon | 78741259 | 78741627 | 78741259 | ID=MS.gene82568.t1.exon2;Parent=MS.gene82568.t1 |
| chr6.3 | CDS | 78741259 | 78741627 | 78741259 | ID=cds.MS.gene82568.t1;Parent=MS.gene82568.t1 |
| chr6.3 | exon | 78742253 | 78742482 | 78742253 | ID=MS.gene82568.t1.exon3;Parent=MS.gene82568.t1 |
| chr6.3 | CDS | 78742253 | 78742482 | 78742253 | ID=cds.MS.gene82568.t1;Parent=MS.gene82568.t1 |
| Gene Sequence |
| Protein sequence |
