Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92401.t1 | XP_013445079.1 | 98.6 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 3.90E-31 | 144.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92401.t1 | B7FMA4 | 98.6 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 2.8e-31 | 144.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene92401 | 0.833726 | 4.52E-56 | -1.69E-46 |
| MS.gene049351 | MS.gene92401 | 0.814552 | 1.45E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene92401 | 0.829323 | 5.49E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene92401 | 0.848645 | 5.37E-60 | -1.69E-46 |
| MS.gene049662 | MS.gene92401 | 0.834945 | 2.23E-56 | -1.69E-46 |
| MS.gene049681 | MS.gene92401 | 0.846559 | 2.01E-59 | -1.69E-46 |
| MS.gene049758 | MS.gene92401 | 0.803657 | 3.14E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene92401 | 0.814609 | 1.41E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene92401 | 0.844192 | 8.80E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene92401 | 0.849188 | 3.80E-60 | -1.69E-46 |
| MS.gene050406 | MS.gene92401 | 0.807109 | 5.93E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene92401 | 0.814824 | 1.27E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene92401 | 0.808327 | 3.27E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene92401 | 0.806825 | 6.82E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene92401 | 0.835594 | 1.53E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene92401 | 0.85656 | 2.96E-62 | -1.69E-46 |
| MS.gene05105 | MS.gene92401 | 0.848925 | 4.49E-60 | -1.69E-46 |
| MS.gene051255 | MS.gene92401 | 0.821776 | 3.37E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene92401 | 0.829248 | 5.73E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene92401 | 0.832269 | 1.04E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene92401 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene92401 | 0.815042 | 1.13E-51 | -1.69E-46 |
| MS.gene051877 | MS.gene92401 | 0.805517 | 1.28E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene92401 | -0.823206 | 1.57E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene92401 | 0.81762 | 3.00E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene92401 | 0.814466 | 1.52E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene92401 | 0.824348 | 8.48E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene92401 | 0.862118 | 6.36E-64 | -1.69E-46 |
| MS.gene052271 | MS.gene92401 | 0.814602 | 1.42E-51 | -1.69E-46 |
| MS.gene052287 | MS.gene92401 | 0.80139 | 9.21E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene92401 | 0.838586 | 2.63E-57 | -1.69E-46 |
| MS.gene052322 | MS.gene92401 | 0.809497 | 1.84E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene92401 | 0.855607 | 5.63E-62 | -1.69E-46 |
| MS.gene052421 | MS.gene92401 | 0.805246 | 1.46E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene92401 | 0.830479 | 2.87E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene92401 | 0.869139 | 3.87E-66 | -1.69E-46 |
| MS.gene053209 | MS.gene92401 | 0.824172 | 9.32E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene92401 | 0.812699 | 3.72E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene92401 | 0.82522 | 5.28E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene92401 | 0.866537 | 2.65E-65 | -1.69E-46 |
| MS.gene053836 | MS.gene92401 | 0.840807 | 6.96E-58 | -1.69E-46 |
| MS.gene054010 | MS.gene92401 | 0.858609 | 7.32E-63 | -1.69E-46 |
| MS.gene054011 | MS.gene92401 | 0.842086 | 3.20E-58 | -1.69E-46 |
| MS.gene054012 | MS.gene92401 | 0.847257 | 1.30E-59 | -1.69E-46 |
| MS.gene054013 | MS.gene92401 | 0.850049 | 2.18E-60 | -1.69E-46 |
| MS.gene054173 | MS.gene92401 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene92401 | 0.815688 | 8.13E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene92401 | 0.812082 | 5.07E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene92401 | 0.805026 | 1.63E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene92401 | 0.882687 | 8.45E-71 | -1.69E-46 |
| MS.gene055277 | MS.gene92401 | 0.868857 | 4.78E-66 | -1.69E-46 |
| MS.gene055390 | MS.gene92401 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene92401 | 0.82158 | 3.74E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene92401 | 0.833679 | 4.64E-56 | -1.69E-46 |
| MS.gene055564 | MS.gene92401 | 0.802925 | 4.45E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene92401 | 0.836094 | 1.14E-56 | -1.69E-46 |
| MS.gene056191 | MS.gene92401 | 0.975917 | 7.69E-141 | -1.69E-46 |
| MS.gene056407 | MS.gene92401 | 0.830544 | 2.77E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene92401 | 0.830516 | 2.81E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene92401 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene92401 | 0.805374 | 1.38E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene92401 | 0.803402 | 3.55E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene92401 | 0.81345 | 2.54E-51 | -1.69E-46 |
| MS.gene056931 | MS.gene92401 | 0.838974 | 2.09E-57 | -1.69E-46 |
| MS.gene056933 | MS.gene92401 | 0.837106 | 6.32E-57 | -1.69E-46 |
| MS.gene056935 | MS.gene92401 | 0.834606 | 2.72E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene92401 | 0.853242 | 2.72E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene92401 | 0.804367 | 2.24E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene92401 | 0.802142 | 6.45E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene92401 | 0.838188 | 3.34E-57 | -1.69E-46 |
| MS.gene057448 | MS.gene92401 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene92401 | 0.806408 | 8.35E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene92401 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene92401 | 0.877754 | 4.88E-69 | -1.69E-46 |
| MS.gene057779 | MS.gene92401 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene92401 | 0.810183 | 1.31E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene92401 | 0.861482 | 9.95E-64 | -1.69E-46 |
| MS.gene057825 | MS.gene92401 | 0.811542 | 6.65E-51 | -1.69E-46 |
| MS.gene057826 | MS.gene92401 | 0.819095 | 1.39E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene92401 | 0.865669 | 4.99E-65 | -1.69E-46 |
| MS.gene058007 | MS.gene92401 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene92401 | 0.841221 | 5.42E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene92401 | 0.810673 | 1.03E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene92401 | 0.805492 | 1.30E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene92401 | 0.856214 | 3.74E-62 | -1.69E-46 |
| MS.gene05886 | MS.gene92401 | 0.818597 | 1.80E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene92401 | 0.84114 | 5.69E-58 | -1.69E-46 |
| MS.gene058995 | MS.gene92401 | 0.892282 | 1.83E-74 | -1.69E-46 |
| MS.gene05907 | MS.gene92401 | 0.86915 | 3.84E-66 | -1.69E-46 |
| MS.gene059141 | MS.gene92401 | 0.825037 | 5.83E-54 | -1.69E-46 |
| MS.gene059294 | MS.gene92401 | 0.86045 | 2.05E-63 | -1.69E-46 |
| MS.gene059420 | MS.gene92401 | 0.846288 | 2.39E-59 | -1.69E-46 |
| MS.gene059462 | MS.gene92401 | 0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene92401 | 0.810577 | 1.08E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene92401 | 0.817568 | 3.08E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene92401 | 0.828355 | 9.42E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene92401 | 0.807548 | 4.79E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene92401 | 0.869228 | 3.62E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene92401 | 0.868467 | 6.39E-66 | -1.69E-46 |
| MS.gene059695 | MS.gene92401 | 0.875496 | 2.94E-68 | -1.69E-46 |
| MS.gene05984 | MS.gene92401 | 0.819246 | 1.28E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene92401 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene92401 | 0.850856 | 1.30E-60 | -1.69E-46 |
| MS.gene060005 | MS.gene92401 | 0.84043 | 8.74E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene92401 | 0.848633 | 5.41E-60 | -1.69E-46 |
| MS.gene060403 | MS.gene92401 | 0.844315 | 8.16E-59 | -1.69E-46 |
| MS.gene060559 | MS.gene92401 | 0.833318 | 5.71E-56 | -1.69E-46 |
| MS.gene060804 | MS.gene92401 | 0.801039 | 1.09E-48 | -1.69E-46 |
| MS.gene060837 | MS.gene92401 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene92401 | 0.824025 | 1.01E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene92401 | 0.863311 | 2.73E-64 | -1.69E-46 |
| MS.gene061051 | MS.gene92401 | -0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene92401 | 0.807929 | 3.98E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92401.t1 | MTR_8g037933 | 94.054 | 185 | 5 | 1 | 1 | 185 | 1 | 179 | 8.77e-115 | 323 |
| MS.gene92401.t1 | MTR_0695s0010 | 88.889 | 36 | 4 | 0 | 35 | 70 | 18 | 53 | 8.57e-17 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATTATGTCCTTCT+AGG | 0.088496 | 8.4:-60297820 | None:intergenic |
| TTTGGAACAGGCTTGTAAAT+TGG | 0.196645 | 8.4:-60298061 | None:intergenic |
| TTTGGAATAGGTTTGTAAAT+TGG | 0.202275 | 8.4:-60298157 | None:intergenic |
| CTTTGGAATAGGCTTGTAAA+TGG | 0.212935 | 8.4:-60298014 | None:intergenic |
| TTATAGACTGGAACGTATTT+TGG | 0.231955 | 8.4:-60297971 | None:intergenic |
| TTTGGAATAGGCTTGTAAAT+TGG | 0.232414 | 8.4:-60298109 | None:intergenic |
| GGAATTGGTTTCTTGAATAT+TGG | 0.237384 | 8.4:-60297902 | None:intergenic |
| TTGTGAATAGGTTTATAAAA+TGG | 0.240012 | 8.4:-60297923 | None:intergenic |
| ATTGGAACAGGCTTGTAAAT+TGG | 0.276520 | 8.4:-60298043 | None:intergenic |
| ATTGGAACAGGCTTGTAAAT+TGG | 0.276520 | 8.4:-60298091 | None:intergenic |
| TTTGGTATAGGTTTGTAAAT+TGG | 0.283056 | 8.4:-60297953 | None:intergenic |
| ATTGGAATAGGCTTGTAAAT+TGG | 0.290762 | 8.4:-60298139 | None:intergenic |
| ATTGGAATTACCTTTGGAAT+AGG | 0.316743 | 8.4:-60298025 | None:intergenic |
| ATTGGAATTACCTTTGGAAT+AGG | 0.316743 | 8.4:-60298121 | None:intergenic |
| ATTGGAATGTCTTTGTGAAT+AGG | 0.322130 | 8.4:-60297935 | None:intergenic |
| CAAAAGTGGCCTTTGCAAAT+TGG | 0.325296 | 8.4:-60296897 | None:intergenic |
| CAATTTGCAAAGGCCACTTT+TGG | 0.327118 | 8.4:+60296898 | MS.gene92401:CDS |
| ATAGGTTTGTAAATTGGAAT+AGG | 0.345184 | 8.4:-60298151 | None:intergenic |
| ATGGGAATTTCCTTTGGAAT+AGG | 0.348694 | 8.4:-60298169 | None:intergenic |
| ATAGGCTTGTAAATGGGAAT+TGG | 0.370906 | 8.4:-60298007 | None:intergenic |
| TTTACAATGGGAATTTCCTT+TGG | 0.389183 | 8.4:-60298175 | None:intergenic |
| GTAGCAAGAAATGATCCTTC+AGG | 0.392442 | 8.4:+60296974 | MS.gene92401:CDS |
| ATAGGTTTATAAAATGGAAT+TGG | 0.398934 | 8.4:-60297917 | None:intergenic |
| TTGTAAATTGGAATTACCTT+TGG | 0.416670 | 8.4:-60298031 | None:intergenic |
| TTGTAAATTGGAATTACCTT+TGG | 0.416670 | 8.4:-60298127 | None:intergenic |
| TTGTAAATTGGAATAACCTT+TGG | 0.416881 | 8.4:-60298079 | None:intergenic |
| ATTGGAATAACCTTTGGAAC+AGG | 0.418441 | 8.4:-60298073 | None:intergenic |
| TAATGGATTGGCTTTACAAT+GGG | 0.423378 | 8.4:-60298187 | None:intergenic |
| ATAGGCTTGTAAATTGGAAC+AGG | 0.440807 | 8.4:-60298103 | None:intergenic |
| ACAGGCTTGTAAATTGGAAC+AGG | 0.447839 | 8.4:-60298055 | None:intergenic |
| ATGGGAATTGGTTTGTGGAT+AGG | 0.448083 | 8.4:-60297995 | None:intergenic |
| GCTTCCCATCTGTGTTCACT+TGG | 0.449323 | 8.4:-60297769 | None:intergenic |
| GCATGATAATCTTAATGGAT+TGG | 0.454921 | 8.4:-60298199 | None:intergenic |
| GCAACAAAGACAAACCTAGA+AGG | 0.464842 | 8.4:+60297806 | MS.gene92401:CDS |
| TGTAAATGGGAATTGGTTTG+TGG | 0.491139 | 8.4:-60298000 | None:intergenic |
| TTTGGAATAGGCTTGTAAAT+GGG | 0.493642 | 8.4:-60298013 | None:intergenic |
| AACAGAAGTAGCATAACAAA+AGG | 0.510420 | 8.4:-60296951 | None:intergenic |
| TTAATGGATTGGCTTTACAA+TGG | 0.537191 | 8.4:-60298188 | None:intergenic |
| TTGTGGATAGGCTTATAGAC+TGG | 0.538000 | 8.4:-60297983 | None:intergenic |
| GGAAACCAAGTGAACACAGA+TGG | 0.546430 | 8.4:+60297764 | MS.gene92401:intron |
| CATCTAAAACACAAACTCAA+AGG | 0.559830 | 8.4:+60297863 | MS.gene92401:CDS |
| AATTTACAAACCTATTCCAA+AGG | 0.560996 | 8.4:+60298159 | MS.gene92401:CDS |
| AATTTACAAGCCTGTTCCAA+AGG | 0.571317 | 8.4:+60298063 | MS.gene92401:CDS |
| CATTTACAAGCCTATTCCAA+AGG | 0.578514 | 8.4:+60298015 | MS.gene92401:CDS |
| GAAACCAAGTGAACACAGAT+GGG | 0.582541 | 8.4:+60297765 | MS.gene92401:CDS |
| GGAACCCAGAAGGCCAAAAG+TGG | 0.583318 | 8.4:-60296911 | None:intergenic |
| AATTTACAAGCCTATTCCAA+AGG | 0.584966 | 8.4:+60298111 | MS.gene92401:CDS |
| GAAAAGCTTCCAATTTGCAA+AGG | 0.597703 | 8.4:+60296888 | MS.gene92401:CDS |
| AAGGTGACAAGGAGCAACAA+AGG | 0.600910 | 8.4:-60296932 | None:intergenic |
| TGGGAAGCTTGCAAATGAAG+AGG | 0.610090 | 8.4:+60297784 | MS.gene92401:CDS |
| GAGCAACAAAGGAACCCAGA+AGG | 0.618628 | 8.4:-60296921 | None:intergenic |
| TAGCATAACAAAAGGTGACA+AGG | 0.637763 | 8.4:-60296943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATAAAATTTTATTTGA+AGG | + | chr8.4:60297404-60297423 | MS.gene92401:intron | 10.0% |
| !! | AAAAAAGAGAGAGAAATTTA+TGG | + | chr8.4:60297149-60297168 | MS.gene92401:intron | 20.0% |
| !! | AAACAAAACAAACATAAACT+TGG | + | chr8.4:60297685-60297704 | MS.gene92401:intron | 20.0% |
| !! | AATGAAGAAGAAAAATTCAA+AGG | + | chr8.4:60297833-60297852 | MS.gene92401:CDS | 20.0% |
| !! | ACATTTATATTTCCCTTAAT+TGG | + | chr8.4:60297125-60297144 | MS.gene92401:intron | 20.0% |
| !! | ATAGGTTTATAAAATGGAAT+TGG | - | chr8.4:60297920-60297939 | None:intergenic | 20.0% |
| !! | GTTCATAAAATATTGTTTGT+TGG | + | chr8.4:60297205-60297224 | MS.gene92401:intron | 20.0% |
| !! | TTCTATGACTAATTTCTAAT+AGG | - | chr8.4:60297627-60297646 | None:intergenic | 20.0% |
| !! | TTGTGAATAGGTTTATAAAA+TGG | - | chr8.4:60297926-60297945 | None:intergenic | 20.0% |
| ! | AATTTACAAACCTATTCCAA+AGG | + | chr8.4:60298159-60298178 | MS.gene92401:CDS | 25.0% |
| ! | ACCATTTAAACATGACTTTA+AGG | - | chr8.4:60297261-60297280 | None:intergenic | 25.0% |
| ! | ATAGGTTTGTAAATTGGAAT+AGG | - | chr8.4:60297950-60297969 | None:intergenic | 25.0% |
| ! | TCCTTAAAGTCATGTTTAAA+TGG | + | chr8.4:60297257-60297276 | MS.gene92401:intron | 25.0% |
| ! | TTGTAAATTGGAATAACCTT+TGG | - | chr8.4:60298082-60298101 | None:intergenic | 25.0% |
| ! | TTGTAAATTGGAATTACCTT+TGG | - | chr8.4:60298034-60298053 | None:intergenic | 25.0% |
| ! | TTTGGTATAGGTTTGTAAAT+TGG | - | chr8.4:60297956-60297975 | None:intergenic | 25.0% |
| !! | TTTGGAATAGGTTTGTAAAT+TGG | - | chr8.4:60298160-60298179 | None:intergenic | 25.0% |
| !!! | CTCTCTTTTTTACCAATTAA+GGG | - | chr8.4:60297140-60297159 | None:intergenic | 25.0% |
| !!! | GTTTCTTGAATATTGGTTTT+TGG | - | chr8.4:60297898-60297917 | None:intergenic | 25.0% |
| !!! | TCTCTCTTTTTTACCAATTA+AGG | - | chr8.4:60297141-60297160 | None:intergenic | 25.0% |
| AACAGAAGTAGCATAACAAA+AGG | - | chr8.4:60296954-60296973 | None:intergenic | 30.0% | |
| AATTTACAAGCCTATTCCAA+AGG | + | chr8.4:60298111-60298130 | MS.gene92401:CDS | 30.0% | |
| ACTATCATCATAATCACACA+AGG | - | chr8.4:60297305-60297324 | None:intergenic | 30.0% | |
| AGTAGTACATATTCATAGAC+TGG | + | chr8.4:60297075-60297094 | MS.gene92401:intron | 30.0% | |
| ATTGGAATAGGCTTGTAAAT+TGG | - | chr8.4:60298142-60298161 | None:intergenic | 30.0% | |
| ATTGGAATGTCTTTGTGAAT+AGG | - | chr8.4:60297938-60297957 | None:intergenic | 30.0% | |
| GTAGTACATATTCATAGACT+GGG | + | chr8.4:60297076-60297095 | MS.gene92401:intron | 30.0% | |
| TTGCTCAAGTTATAAACTCT+AGG | - | chr8.4:60297726-60297745 | None:intergenic | 30.0% | |
| TTTACAATGGGAATTTCCTT+TGG | - | chr8.4:60298178-60298197 | None:intergenic | 30.0% | |
| ! | CATCTAAAACACAAACTCAA+AGG | + | chr8.4:60297863-60297882 | MS.gene92401:CDS | 30.0% |
| ! | GGAATTGGTTTCTTGAATAT+TGG | - | chr8.4:60297905-60297924 | None:intergenic | 30.0% |
| ! | TTATAGACTGGAACGTATTT+TGG | - | chr8.4:60297974-60297993 | None:intergenic | 30.0% |
| ! | TTTGGAATAGGCTTGTAAAT+GGG | - | chr8.4:60298016-60298035 | None:intergenic | 30.0% |
| ! | TTTGGAATAGGCTTGTAAAT+TGG | - | chr8.4:60298016-60298035 | None:intergenic | 30.0% |
| !! | ATTGGAATTACCTTTGGAAT+AGG | - | chr8.4:60298028-60298047 | None:intergenic | 30.0% |
| !! | TAATGGATTGGCTTTACAAT+GGG | - | chr8.4:60298190-60298209 | None:intergenic | 30.0% |
| !! | TTAATGGATTGGCTTTACAA+TGG | - | chr8.4:60298191-60298210 | None:intergenic | 30.0% |
| !!! | GGGTTATTTTTGTTTACTCT+TGG | + | chr8.4:60297096-60297115 | MS.gene92401:intron | 30.0% |
| AATTTACAAGCCTGTTCCAA+AGG | + | chr8.4:60298045-60298064 | MS.gene92401:CDS | 35.0% | |
| ATAAACTTGGTCATTGAGCT+AGG | + | chr8.4:60297698-60297717 | MS.gene92401:intron | 35.0% | |
| ATAGGCTTGTAAATGGGAAT+TGG | - | chr8.4:60298010-60298029 | None:intergenic | 35.0% | |
| ATAGGCTTGTAAATTGGAAC+AGG | - | chr8.4:60298106-60298125 | None:intergenic | 35.0% | |
| ATTCAAACCAATACACACAC+AGG | + | chr8.4:60297505-60297524 | MS.gene92401:intron | 35.0% | |
| ATTGGAACAGGCTTGTAAAT+TGG | - | chr8.4:60298046-60298065 | None:intergenic | 35.0% | |
| CATTTACAAGCCTATTCCAA+AGG | + | chr8.4:60298015-60298034 | MS.gene92401:CDS | 35.0% | |
| CTTCTTCATTATGTCCTTCT+AGG | - | chr8.4:60297823-60297842 | None:intergenic | 35.0% | |
| GAAAAGCTTCCAATTTGCAA+AGG | + | chr8.4:60296888-60296907 | MS.gene92401:CDS | 35.0% | |
| GGTTCAAGAAGAATTGAACT+CGG | + | chr8.4:60297537-60297556 | MS.gene92401:intron | 35.0% | |
| TAGCATAACAAAAGGTGACA+AGG | - | chr8.4:60296946-60296965 | None:intergenic | 35.0% | |
| TATTGTACTCACAAACCTGA+AGG | - | chr8.4:60296992-60297011 | None:intergenic | 35.0% | |
| ! | CAATTTTGCATTTCTTGTGC+AGG | + | chr8.4:60297743-60297762 | MS.gene92401:intron | 35.0% |
| ! | TTTGGAACAGGCTTGTAAAT+TGG | - | chr8.4:60298064-60298083 | None:intergenic | 35.0% |
| !! | ATGGGAATTTCCTTTGGAAT+AGG | - | chr8.4:60298172-60298191 | None:intergenic | 35.0% |
| !! | ATTGGAATAACCTTTGGAAC+AGG | - | chr8.4:60298076-60298095 | None:intergenic | 35.0% |
| !! | CTTTGGAATAGGCTTGTAAA+TGG | - | chr8.4:60298017-60298036 | None:intergenic | 35.0% |
| !! | TGTAAATGGGAATTGGTTTG+TGG | - | chr8.4:60298003-60298022 | None:intergenic | 35.0% |
| !!! | ACTGGAACGTATTTTGGTAT+AGG | - | chr8.4:60297968-60297987 | None:intergenic | 35.0% |
| ACAGGCTTGTAAATTGGAAC+AGG | - | chr8.4:60298058-60298077 | None:intergenic | 40.0% | |
| CAAAAGTGGCCTTTGCAAAT+TGG | - | chr8.4:60296900-60296919 | None:intergenic | 40.0% | |
| GAAACCAAGTGAACACAGAT+GGG | + | chr8.4:60297765-60297784 | MS.gene92401:CDS | 40.0% | |
| GCAACAAAGACAAACCTAGA+AGG | + | chr8.4:60297806-60297825 | MS.gene92401:CDS | 40.0% | |
| GTAGCAAGAAATGATCCTTC+AGG | + | chr8.4:60296974-60296993 | MS.gene92401:CDS | 40.0% | |
| TTGTGGATAGGCTTATAGAC+TGG | - | chr8.4:60297986-60298005 | None:intergenic | 40.0% | |
| !! | ATGGGAATTGGTTTGTGGAT+AGG | - | chr8.4:60297998-60298017 | None:intergenic | 40.0% |
| !! | CAATTTGCAAAGGCCACTTT+TGG | + | chr8.4:60296898-60296917 | MS.gene92401:CDS | 40.0% |
| AAGGTGACAAGGAGCAACAA+AGG | - | chr8.4:60296935-60296954 | None:intergenic | 45.0% | |
| GGAAACCAAGTGAACACAGA+TGG | + | chr8.4:60297764-60297783 | MS.gene92401:intron | 45.0% | |
| TGGGAAGCTTGCAAATGAAG+AGG | + | chr8.4:60297784-60297803 | MS.gene92401:CDS | 45.0% | |
| !!! | ATAATTTAGTTTTTAATAAA+AGG | - | chr8.4:60297454-60297473 | None:intergenic | 5.0% |
| CGTAGTGCCTGTGTGTGTAT+TGG | - | chr8.4:60297515-60297534 | None:intergenic | 50.0% | |
| GAGCAACAAAGGAACCCAGA+AGG | - | chr8.4:60296924-60296943 | None:intergenic | 50.0% | |
| GCTTCCCATCTGTGTTCACT+TGG | - | chr8.4:60297772-60297791 | None:intergenic | 50.0% | |
| TACACACACAGGCACTACGT+TGG | + | chr8.4:60297516-60297535 | MS.gene92401:intron | 50.0% | |
| !!! | AAAGGCCACTTTTGGCCTTC+TGG | + | chr8.4:60296906-60296925 | MS.gene92401:CDS | 50.0% |
| !!! | AAGGCCACTTTTGGCCTTCT+GGG | + | chr8.4:60296907-60296926 | MS.gene92401:CDS | 50.0% |
| GGAACCCAGAAGGCCAAAAG+TGG | - | chr8.4:60296914-60296933 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60296884 | 60298210 | 60296884 | ID=MS.gene92401 |
| chr8.4 | mRNA | 60296884 | 60298210 | 60296884 | ID=MS.gene92401.t1;Parent=MS.gene92401 |
| chr8.4 | exon | 60296884 | 60296995 | 60296884 | ID=MS.gene92401.t1.exon1;Parent=MS.gene92401.t1 |
| chr8.4 | CDS | 60296884 | 60296995 | 60296884 | ID=cds.MS.gene92401.t1;Parent=MS.gene92401.t1 |
| chr8.4 | exon | 60297765 | 60298210 | 60297765 | ID=MS.gene92401.t1.exon2;Parent=MS.gene92401.t1 |
| chr8.4 | CDS | 60297765 | 60298210 | 60297765 | ID=cds.MS.gene92401.t1;Parent=MS.gene92401.t1 |
| Gene Sequence |
| Protein sequence |
