Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94292.t1 | XP_024642074.1 | 98 | 401 | 8 | 0 | 17 | 417 | 61 | 461 | 4.80E-192 | 680.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94292.t1 | Q0WMN5 | 50.3 | 394 | 178 | 4 | 30 | 420 | 67 | 445 | 1.4e-70 | 268.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94292.t1 | G7KLG6 | 98.0 | 401 | 8 | 0 | 17 | 417 | 61 | 461 | 3.5e-192 | 680.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene94292 | 0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene94292 | 0.806233 | 9.09E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene94292 | 0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene049356 | MS.gene94292 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene94292 | 0.825182 | 5.39E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene94292 | 0.836329 | 9.98E-57 | -1.69E-46 |
| MS.gene049661 | MS.gene94292 | 0.818624 | 1.78E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene94292 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene049828 | MS.gene94292 | 0.807343 | 5.29E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene94292 | 0.870224 | 1.71E-66 | -1.69E-46 |
| MS.gene050099 | MS.gene94292 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene94292 | 0.842744 | 2.14E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene94292 | 0.864832 | 9.15E-65 | -1.69E-46 |
| MS.gene050767 | MS.gene94292 | 0.861141 | 1.26E-63 | -1.69E-46 |
| MS.gene050770 | MS.gene94292 | 0.862324 | 5.50E-64 | -1.69E-46 |
| MS.gene050783 | MS.gene94292 | 0.826245 | 3.02E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene94292 | 0.81803 | 2.42E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene94292 | 0.858844 | 6.23E-63 | -1.69E-46 |
| MS.gene05105 | MS.gene94292 | 0.815723 | 7.99E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene94292 | 0.827267 | 1.72E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene94292 | 0.842627 | 2.30E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene94292 | 0.831545 | 1.57E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene94292 | 0.82109 | 4.86E-53 | -1.69E-46 |
| MS.gene051877 | MS.gene94292 | 0.825607 | 4.28E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene94292 | 0.867422 | 1.38E-65 | -1.69E-46 |
| MS.gene052188 | MS.gene94292 | 0.84072 | 7.33E-58 | -1.69E-46 |
| MS.gene052271 | MS.gene94292 | 0.828893 | 6.98E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene94292 | 0.847108 | 1.42E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene94292 | 0.842963 | 1.88E-58 | -1.69E-46 |
| MS.gene052322 | MS.gene94292 | 0.818534 | 1.86E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene94292 | 0.871498 | 6.53E-67 | -1.69E-46 |
| MS.gene052340 | MS.gene94292 | 0.817349 | 3.45E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene94292 | 0.828909 | 6.92E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene94292 | 0.818383 | 2.02E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene94292 | 0.819995 | 8.67E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene94292 | 0.832889 | 7.31E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene94292 | 0.833537 | 5.04E-56 | -1.69E-46 |
| MS.gene053107 | MS.gene94292 | 0.809229 | 2.10E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene94292 | 0.801522 | 8.65E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene94292 | 0.829019 | 6.51E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene94292 | 0.830281 | 3.21E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene94292 | 0.815195 | 1.05E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene94292 | 0.811545 | 6.63E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene94292 | 0.805738 | 1.16E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene94292 | 0.868251 | 7.50E-66 | -1.69E-46 |
| MS.gene054376 | MS.gene94292 | 0.86151 | 9.75E-64 | -1.69E-46 |
| MS.gene05455 | MS.gene94292 | 0.833379 | 5.52E-56 | -1.69E-46 |
| MS.gene054802 | MS.gene94292 | 0.851225 | 1.02E-60 | -1.69E-46 |
| MS.gene054803 | MS.gene94292 | 0.855642 | 5.50E-62 | -1.69E-46 |
| MS.gene054804 | MS.gene94292 | 0.857308 | 1.78E-62 | -1.69E-46 |
| MS.gene055254 | MS.gene94292 | 0.84619 | 2.54E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene94292 | 0.847881 | 8.73E-60 | -1.69E-46 |
| MS.gene055390 | MS.gene94292 | 0.846751 | 1.78E-59 | -1.69E-46 |
| MS.gene055397 | MS.gene94292 | 0.851387 | 9.18E-61 | -1.69E-46 |
| MS.gene055412 | MS.gene94292 | 0.829813 | 4.17E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene94292 | 0.833058 | 6.63E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene94292 | 0.838969 | 2.10E-57 | -1.69E-46 |
| MS.gene055499 | MS.gene94292 | 0.842962 | 1.88E-58 | -1.69E-46 |
| MS.gene055633 | MS.gene94292 | 0.824823 | 6.55E-54 | -1.69E-46 |
| MS.gene055636 | MS.gene94292 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene94292 | 0.821263 | 4.43E-53 | -1.69E-46 |
| MS.gene055802 | MS.gene94292 | 0.807412 | 5.12E-50 | -1.69E-46 |
| MS.gene055896 | MS.gene94292 | 0.818779 | 1.64E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene94292 | 0.826522 | 2.59E-54 | -1.69E-46 |
| MS.gene05602 | MS.gene94292 | 0.811925 | 5.48E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene94292 | 0.847229 | 1.32E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene94292 | 0.847551 | 1.08E-59 | -1.69E-46 |
| MS.gene056609 | MS.gene94292 | 0.859903 | 3.00E-63 | -1.69E-46 |
| MS.gene056612 | MS.gene94292 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene94292 | 0.831992 | 1.22E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene94292 | 0.825531 | 4.46E-54 | -1.69E-46 |
| MS.gene057123 | MS.gene94292 | 0.804778 | 1.83E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene94292 | 0.870655 | 1.24E-66 | -1.69E-46 |
| MS.gene057146 | MS.gene94292 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene94292 | 0.874721 | 5.41E-68 | -1.69E-46 |
| MS.gene05733 | MS.gene94292 | 0.811028 | 8.59E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene94292 | 0.827393 | 1.60E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene94292 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene94292 | 0.811911 | 5.52E-51 | -1.69E-46 |
| MS.gene057927 | MS.gene94292 | 0.810069 | 1.38E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene94292 | 0.829984 | 3.79E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene94292 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene94292 | 0.856849 | 2.44E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene94292 | 0.820029 | 8.51E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene94292 | 0.806256 | 8.98E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene94292 | 0.871645 | 5.84E-67 | -1.69E-46 |
| MS.gene058365 | MS.gene94292 | 0.85323 | 2.74E-61 | -1.69E-46 |
| MS.gene058660 | MS.gene94292 | 0.861661 | 8.77E-64 | -1.69E-46 |
| MS.gene058748 | MS.gene94292 | 0.806756 | 7.05E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene94292 | 0.834665 | 2.63E-56 | -1.69E-46 |
| MS.gene058903 | MS.gene94292 | 0.803674 | 3.11E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene94292 | 0.846406 | 2.22E-59 | -1.69E-46 |
| MS.gene05907 | MS.gene94292 | 0.830804 | 2.39E-55 | -1.69E-46 |
| MS.gene059326 | MS.gene94292 | 0.811638 | 6.33E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene94292 | 0.863112 | 3.14E-64 | -1.69E-46 |
| MS.gene05959 | MS.gene94292 | 0.835028 | 2.13E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene94292 | 0.879675 | 1.03E-69 | -1.69E-46 |
| MS.gene059688 | MS.gene94292 | 0.835023 | 2.14E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene94292 | 0.854607 | 1.10E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene94292 | 0.856603 | 2.88E-62 | -1.69E-46 |
| MS.gene059708 | MS.gene94292 | 0.835688 | 1.45E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene94292 | 0.804351 | 2.25E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene94292 | 0.830283 | 3.20E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene94292 | 0.856069 | 4.13E-62 | -1.69E-46 |
| MS.gene059974 | MS.gene94292 | 0.800698 | 1.28E-48 | -1.69E-46 |
| MS.gene060005 | MS.gene94292 | 0.830136 | 3.48E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene94292 | 0.825242 | 5.22E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene94292 | 0.837208 | 5.95E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene94292 | 0.802545 | 5.33E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene94292 | 0.82988 | 4.02E-55 | -1.69E-46 |
| MS.gene060818 | MS.gene94292 | 0.825641 | 4.20E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene94292 | 0.815193 | 1.05E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene94292 | 0.822708 | 2.05E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene94292 | -0.853797 | 1.88E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene94292 | 0.86948 | 3.00E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94292.t1 | MTR_6g052360 | 98.010 | 402 | 8 | 0 | 17 | 418 | 61 | 462 | 0.0 | 803 |
| MS.gene94292.t1 | MTR_6g052360 | 98.005 | 401 | 8 | 0 | 17 | 417 | 61 | 461 | 0.0 | 802 |
| MS.gene94292.t1 | MTR_6g052360 | 98.099 | 263 | 5 | 0 | 156 | 418 | 1 | 263 | 0.0 | 521 |
| MS.gene94292.t1 | MTR_5g090150 | 25.707 | 389 | 215 | 12 | 36 | 420 | 65 | 383 | 1.89e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94292.t1 | AT5G24060 | 44.118 | 408 | 199 | 9 | 27 | 427 | 27 | 412 | 3.26e-105 | 320 |
| MS.gene94292.t1 | AT5G24060 | 44.665 | 403 | 194 | 9 | 30 | 425 | 60 | 440 | 9.56e-105 | 320 |
| MS.gene94292.t1 | AT5G24060 | 44.750 | 400 | 192 | 9 | 33 | 425 | 50 | 427 | 2.88e-104 | 318 |
| MS.gene94292.t1 | AT3G49140 | 41.898 | 432 | 207 | 8 | 27 | 442 | 64 | 467 | 3.49e-93 | 290 |
| MS.gene94292.t1 | AT3G59300 | 26.741 | 359 | 197 | 9 | 59 | 414 | 102 | 397 | 5.03e-28 | 116 |
| MS.gene94292.t1 | AT3G59300 | 26.741 | 359 | 197 | 9 | 59 | 414 | 96 | 391 | 5.96e-28 | 115 |
| MS.gene94292.t1 | AT3G59300 | 25.281 | 356 | 173 | 11 | 59 | 414 | 96 | 358 | 4.14e-21 | 95.5 |
Find 75 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCGGCTTTAGTGTATTT+TGG | 0.178788 | 6.2:-42580737 | MS.gene94292:CDS |
| TAATGAGAAAACTTTCTTAA+TGG | 0.193353 | 6.2:+42580707 | None:intergenic |
| TTCTGTTACTTTACTAATTT+CGG | 0.236432 | 6.2:+42581689 | None:intergenic |
| AACAATCTCCAATCTGTAAA+AGG | 0.275206 | 6.2:+42581545 | None:intergenic |
| GAAAGTGTTGGTGCGATTAA+TGG | 0.298867 | 6.2:-42581657 | MS.gene94292:CDS |
| CCATGTTCATCTGTCAAATA+TGG | 0.298949 | 6.2:+42583067 | None:intergenic |
| ATTACATTAACTTGTACTTT+TGG | 0.309026 | 6.2:+42580676 | None:intergenic |
| ACTTGCAGACTGGGCAAAAT+TGG | 0.313686 | 6.2:-42582023 | MS.gene94292:CDS |
| TCCTAGTTTCCGCAGTTAAA+TGG | 0.317372 | 6.2:-42580765 | MS.gene94292:intron |
| CTTCAGATGATCCAATTGAT+TGG | 0.355755 | 6.2:-42581821 | MS.gene94292:CDS |
| CTCCGGGGAAATGGAGTGCC+TGG | 0.361702 | 6.2:+42584176 | None:intergenic |
| ATGGTAAATTGTGACTTCTT+AGG | 0.370183 | 6.2:-42585224 | MS.gene94292:CDS |
| TCTTCACAAGTTTGTTTCTC+CGG | 0.373500 | 6.2:+42584159 | None:intergenic |
| GTCCATCAGAAATTGACTTT+GGG | 0.382835 | 6.2:-42582318 | MS.gene94292:CDS |
| TCTGTCAAATATGGCAAATC+TGG | 0.384390 | 6.2:+42583076 | None:intergenic |
| AGTTTGTTTCTCCGGGGAAA+TGG | 0.385331 | 6.2:+42584167 | None:intergenic |
| TCGTGTAGTCTTCTACTTCA+AGG | 0.390376 | 6.2:+42580990 | None:intergenic |
| TTCGGCAGTGCTGGATTGAT+TGG | 0.391704 | 6.2:+42581707 | None:intergenic |
| TTTACTAATTTCGGCAGTGC+TGG | 0.401100 | 6.2:+42581698 | None:intergenic |
| AATATCATGATAATATTGTT+TGG | 0.402796 | 6.2:-42583099 | MS.gene94292:CDS |
| GCAGATAGATGCTTCTGTAT+TGG | 0.403056 | 6.2:+42581729 | None:intergenic |
| GGTCCATCAGAAATTGACTT+TGG | 0.406974 | 6.2:-42582319 | MS.gene94292:CDS |
| GGCTGCTCCATCCAATCAAT+TGG | 0.411923 | 6.2:+42581810 | None:intergenic |
| GAGGCAGCTATTTCCTCAAA+TGG | 0.417837 | 6.2:+42584059 | None:intergenic |
| AGAAATTGACTTTGGGATTG+AGG | 0.418025 | 6.2:-42582311 | MS.gene94292:CDS |
| TATTTCCTCAAATGGGTGAT+AGG | 0.435060 | 6.2:+42584067 | None:intergenic |
| ATCTCTGAGATGGACTTATC+AGG | 0.436637 | 6.2:-42582340 | MS.gene94292:CDS |
| CTTCACAAGTTTGTTTCTCC+GGG | 0.437426 | 6.2:+42584160 | None:intergenic |
| ATATCTCATTTGAAAGCTGC+TGG | 0.447699 | 6.2:-42580926 | MS.gene94292:CDS |
| TTATTGTTTGCAGGAATGGC+TGG | 0.451594 | 6.2:-42582092 | MS.gene94292:intron |
| TATCCAACAGAGAGACTTAA+GGG | 0.466816 | 6.2:+42580880 | None:intergenic |
| ATATCCAACAGAGAGACTTA+AGG | 0.470097 | 6.2:+42580879 | None:intergenic |
| ACGCAGGTCTTATAACTCCT+TGG | 0.498828 | 6.2:+42581769 | None:intergenic |
| TGAAGATAACGCATCACAAA+AGG | 0.499955 | 6.2:-42581610 | MS.gene94292:CDS |
| TCCTCAAATGGGTGATAGGA+TGG | 0.503275 | 6.2:+42584071 | None:intergenic |
| AGATGATCCAATTGATTGGA+TGG | 0.503955 | 6.2:-42581817 | MS.gene94292:CDS |
| GATGACCTTGCAATAGCATC+AGG | 0.506785 | 6.2:+42580959 | None:intergenic |
| ATGATGAAGCACTTGCAGAC+TGG | 0.507045 | 6.2:-42582033 | MS.gene94292:CDS |
| ACAACATCCTAGCTCAGATC+AGG | 0.512194 | 6.2:-42584117 | MS.gene94292:CDS |
| TGAAAATGAAGATGAGAATG+AGG | 0.513120 | 6.2:-42582230 | MS.gene94292:CDS |
| CCAGCTTGTGTAGTCTTCCA+AGG | 0.514469 | 6.2:-42581786 | MS.gene94292:CDS |
| TGATGAAGCACTTGCAGACT+GGG | 0.525455 | 6.2:-42582032 | MS.gene94292:CDS |
| GTCTCTCTGTTGGATATGCA+AGG | 0.527770 | 6.2:-42580873 | MS.gene94292:CDS |
| ATCCCAAAGTCAATTTCTGA+TGG | 0.528071 | 6.2:+42582316 | None:intergenic |
| AGGCAGCTATTTCCTCAAAT+GGG | 0.535456 | 6.2:+42584060 | None:intergenic |
| TAAAAGGAAGTCTCGTCTGA+AGG | 0.536320 | 6.2:+42581561 | None:intergenic |
| AACAAGTAGAACTGTTATTG+AGG | 0.539337 | 6.2:-42583994 | MS.gene94292:intron |
| ACAGGCTCCTGATCTGAGCT+AGG | 0.557261 | 6.2:+42584110 | None:intergenic |
| GCCATCCTATCACCCATTTG+AGG | 0.558341 | 6.2:-42584072 | MS.gene94292:CDS |
| GAAAATAAAGAAGAAAGTGT+TGG | 0.559419 | 6.2:-42581669 | MS.gene94292:CDS |
| CGTAATTGGTGTGGATACCA+TGG | 0.562601 | 6.2:-42582368 | MS.gene94292:CDS |
| CCTTGGAAGACTACACAAGC+TGG | 0.567061 | 6.2:+42581786 | None:intergenic |
| CATCTCAGAGATCATTTCCA+TGG | 0.568661 | 6.2:+42582351 | None:intergenic |
| TCCGGGGAAATGGAGTGCCT+GGG | 0.569648 | 6.2:+42584177 | None:intergenic |
| ACCCAGGCACTCCATTTCCC+CGG | 0.572551 | 6.2:-42584178 | MS.gene94292:CDS |
| CATGGAAATGATCTCTGAGA+TGG | 0.575487 | 6.2:-42582350 | MS.gene94292:CDS |
| GGTTAACAGCAAAGCAACAA+TGG | 0.576380 | 6.2:-42583146 | MS.gene94292:CDS |
| AAAAGGAAGTCTCGTCTGAA+GGG | 0.577512 | 6.2:+42581562 | None:intergenic |
| CCATATTTGACAGATGAACA+TGG | 0.584747 | 6.2:-42583067 | MS.gene94292:CDS |
| GGAAATAGCTGCCTCCACAT+TGG | 0.585698 | 6.2:-42584051 | MS.gene94292:CDS |
| AAGCCCTTAAGTCTCTCTGT+TGG | 0.591338 | 6.2:-42580883 | MS.gene94292:CDS |
| GTAGCAAGTCGTAATTGGTG+TGG | 0.591867 | 6.2:-42582377 | MS.gene94292:intron |
| AGATAACGCATCACAAAAGG+TGG | 0.594687 | 6.2:-42581607 | MS.gene94292:CDS |
| GACTGCAAAATATCTTCACC+TGG | 0.605559 | 6.2:+42582929 | None:intergenic |
| TCTCTCTGTTGGATATGCAA+GGG | 0.606977 | 6.2:-42580872 | MS.gene94292:CDS |
| CTCAACCTGATGCTATTGCA+AGG | 0.627135 | 6.2:-42580964 | MS.gene94292:CDS |
| GATATGCAAGGGTATTCAAG+TGG | 0.638092 | 6.2:-42580861 | MS.gene94292:CDS |
| CTCACTAATCTCCAATGTGG+AGG | 0.643018 | 6.2:+42584040 | None:intergenic |
| ATGCAAGGGTATTCAAGTGG+AGG | 0.645083 | 6.2:-42580858 | MS.gene94292:intron |
| ATCCTCACTAATCTCCAATG+TGG | 0.656177 | 6.2:+42584037 | None:intergenic |
| TGAGAATGAGGATTATGACT+CGG | 0.665245 | 6.2:-42582218 | MS.gene94292:intron |
| CTCCACATTGGAGATTAGTG+AGG | 0.667251 | 6.2:-42584039 | MS.gene94292:CDS |
| CGCGCAAAACCATTTAACTG+CGG | 0.679912 | 6.2:+42580756 | None:intergenic |
| TTCACAAGTTTGTTTCTCCG+GGG | 0.684542 | 6.2:+42584161 | None:intergenic |
| TGGAAGACTACACAAGCTGG+AGG | 0.707383 | 6.2:+42581789 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTAAAAAAAA+AGG | - | chr6.2:42580899-42580918 | MS.gene94292:CDS | 0.0% |
| !!! | AAAAATGTATAAATTTTGTT+TGG | - | chr6.2:42582481-42582500 | MS.gene94292:intron | 10.0% |
| !!! | ATGGATATATTTAATTTAAA+AGG | - | chr6.2:42584572-42584591 | MS.gene94292:intron | 10.0% |
| !!! | TGGATATATTTAATTTAAAA+GGG | - | chr6.2:42584573-42584592 | MS.gene94292:intron | 10.0% |
| !! | AAAGAAAAAAAAACTATAAC+AGG | - | chr6.2:42584613-42584632 | MS.gene94292:intron | 15.0% |
| !! | AATATCATGATAATATTGTT+TGG | - | chr6.2:42582802-42582821 | MS.gene94292:intron | 15.0% |
| !! | ACAATAAATATGAATAATAG+TGG | + | chr6.2:42583796-42583815 | None:intergenic | 15.0% |
| !! | ATAATTTGATATAATTATGC+AGG | - | chr6.2:42581684-42581703 | MS.gene94292:CDS | 15.0% |
| !! | TTGTTCATATTTATTGATAT+TGG | - | chr6.2:42584490-42584509 | MS.gene94292:intron | 15.0% |
| !!! | AAAATTATTTTCTGAAGTTA+GGG | + | chr6.2:42582997-42583016 | None:intergenic | 15.0% |
| !!! | GGTATTAACATTTTTAAATA+AGG | - | chr6.2:42582213-42582232 | MS.gene94292:intron | 15.0% |
| !!! | TATTTATTCTAAGAAATATG+AGG | - | chr6.2:42584762-42584781 | MS.gene94292:intron | 15.0% |
| !!! | TTAAAAATGTTAATACCTTT+TGG | + | chr6.2:42582210-42582229 | None:intergenic | 15.0% |
| !!! | TTGTTTTTAATGTAATTATG+AGG | - | chr6.2:42583719-42583738 | MS.gene94292:intron | 15.0% |
| !! | AAAAGTTTATCTCAACAAAT+CGG | + | chr6.2:42581080-42581099 | None:intergenic | 20.0% |
| !! | AGAATTATGATTACAACAAA+AGG | + | chr6.2:42583435-42583454 | None:intergenic | 20.0% |
| !! | CAAAACAAAGAATAATACAA+TGG | + | chr6.2:42582310-42582329 | None:intergenic | 20.0% |
| !! | CAATTTAATCTCCTATTTAT+CGG | + | chr6.2:42582286-42582305 | None:intergenic | 20.0% |
| !! | TAATGAGAAAACTTTCTTAA+TGG | + | chr6.2:42585197-42585216 | None:intergenic | 20.0% |
| !! | TATTCATATTTATTGTTTGC+AGG | - | chr6.2:42583800-42583819 | MS.gene94292:intron | 20.0% |
| !! | TGCTTGTAGAATTTAATTAA+CGG | + | chr6.2:42582926-42582945 | None:intergenic | 20.0% |
| !! | TTAACTACAAGAAAAAAATG+AGG | + | chr6.2:42580777-42580796 | None:intergenic | 20.0% |
| !! | TTATTGAATATGCTTAAGTT+GGG | - | chr6.2:42582402-42582421 | MS.gene94292:intron | 20.0% |
| !! | TTCTTAATTCATAACTCAAT+TGG | - | chr6.2:42584714-42584733 | MS.gene94292:intron | 20.0% |
| !!! | AACTTCAGAAAATAATTTTG+TGG | - | chr6.2:42582998-42583017 | MS.gene94292:intron | 20.0% |
| !!! | AATTTTTTAGCAAAATCCAT+TGG | + | chr6.2:42583924-42583943 | None:intergenic | 20.0% |
| !!! | ATCATCTTAGGTTTTTATAT+TGG | - | chr6.2:42581378-42581397 | MS.gene94292:intron | 20.0% |
| !!! | CAAAATTATTTTCTGAAGTT+AGG | + | chr6.2:42582998-42583017 | None:intergenic | 20.0% |
| !!! | CAGTATTTTCTAAAATGAAA+CGG | + | chr6.2:42582143-42582162 | None:intergenic | 20.0% |
| !!! | TATTTATACCTTTTCTTTGT+TGG | - | chr6.2:42584853-42584872 | MS.gene94292:intron | 20.0% |
| !!! | TCATCTTAGGTTTTTATATT+GGG | - | chr6.2:42581379-42581398 | MS.gene94292:intron | 20.0% |
| !!! | TCATTTTTTTCTTGTAGTTA+AGG | - | chr6.2:42580776-42580795 | MS.gene94292:intron | 20.0% |
| !!! | TTCTGTTACTTTACTAATTT+CGG | + | chr6.2:42584215-42584234 | None:intergenic | 20.0% |
| ! | AAATCTTAGATGAAAGTTCT+TGG | + | chr6.2:42581507-42581526 | None:intergenic | 25.0% |
| ! | AACTGTAAACCTAGAAAAAA+AGG | + | chr6.2:42582246-42582265 | None:intergenic | 25.0% |
| ! | AATAAAATTCGGCAAACATT+TGG | - | chr6.2:42581954-42581973 | MS.gene94292:intron | 25.0% |
| ! | AATAGAGAATATCTGCATTA+TGG | - | chr6.2:42582443-42582462 | MS.gene94292:intron | 25.0% |
| ! | AATCTTAGATGAAAGTTCTT+GGG | + | chr6.2:42581506-42581525 | None:intergenic | 25.0% |
| ! | AATGAACATCAAGAAAATGA+AGG | + | chr6.2:42583242-42583261 | None:intergenic | 25.0% |
| ! | AATGCAGATATTCTCTATTA+GGG | + | chr6.2:42582442-42582461 | None:intergenic | 25.0% |
| ! | AATGCCATTAATATAAGAAC+AGG | + | chr6.2:42583194-42583213 | None:intergenic | 25.0% |
| ! | AATTATTGTTGAAGTCCAAA+AGG | + | chr6.2:42583293-42583312 | None:intergenic | 25.0% |
| ! | AATTTAGTGACTGCTTTAAT+TGG | - | chr6.2:42584526-42584545 | MS.gene94292:intron | 25.0% |
| ! | ACTGTTTGTAAGTATTTCAT+AGG | + | chr6.2:42583066-42583085 | None:intergenic | 25.0% |
| ! | ATATTTATTGTTTGCAGGAA+TGG | - | chr6.2:42583805-42583824 | MS.gene94292:intron | 25.0% |
| ! | ATGCCATTAATATAAGAACA+GGG | + | chr6.2:42583193-42583212 | None:intergenic | 25.0% |
| ! | CACAAGGAGAAAATAAAATT+CGG | - | chr6.2:42581943-42581962 | MS.gene94292:intron | 25.0% |
| ! | CATACTCAGTTAAGAAATAA+TGG | - | chr6.2:42584553-42584572 | MS.gene94292:intron | 25.0% |
| ! | CATATTCAATAAGTCAAAAC+AGG | + | chr6.2:42582394-42582413 | None:intergenic | 25.0% |
| ! | CGATAAATAGGAGATTAAAT+TGG | - | chr6.2:42582284-42582303 | MS.gene94292:CDS | 25.0% |
| ! | CTTATTGAATATGCTTAAGT+TGG | - | chr6.2:42582401-42582420 | MS.gene94292:intron | 25.0% |
| ! | CTTGTAGAATTTAATTAACG+GGG | + | chr6.2:42582924-42582943 | None:intergenic | 25.0% |
| ! | GAAATACTATATGTAATGAG+AGG | - | chr6.2:42581655-42581674 | MS.gene94292:CDS | 25.0% |
| ! | GCTTGTAGAATTTAATTAAC+GGG | + | chr6.2:42582925-42582944 | None:intergenic | 25.0% |
| ! | GTAGATAATTACCGATAAAT+AGG | - | chr6.2:42582272-42582291 | MS.gene94292:CDS | 25.0% |
| ! | TAATGCAGATATTCTCTATT+AGG | + | chr6.2:42582443-42582462 | None:intergenic | 25.0% |
| ! | TATCACTAGATAACTTTATG+CGG | + | chr6.2:42580847-42580866 | None:intergenic | 25.0% |
| ! | TATGTAGTGTTATAAAGCTT+GGG | + | chr6.2:42581166-42581185 | None:intergenic | 25.0% |
| ! | TGTTAATGTAACCTAATTTG+TGG | - | chr6.2:42583956-42583975 | MS.gene94292:intron | 25.0% |
| ! | TTAAAAAAAAAGGTTTCTGC+AGG | - | chr6.2:42580909-42580928 | MS.gene94292:CDS | 25.0% |
| !! | AAAATGTTAATACCTTTTGG+AGG | + | chr6.2:42582207-42582226 | None:intergenic | 25.0% |
| !! | AATAATTTTGTGGTAAGACT+AGG | - | chr6.2:42583008-42583027 | MS.gene94292:intron | 25.0% |
| !! | ATTTAATATCCTCACACTTT+TGG | - | chr6.2:42583310-42583329 | MS.gene94292:intron | 25.0% |
| !! | CATTTGTTAATTCATTTCTC+AGG | + | chr6.2:42581569-42581588 | None:intergenic | 25.0% |
| !! | GAAAATAAAGAAGAAAGTGT+TGG | - | chr6.2:42584232-42584251 | MS.gene94292:intron | 25.0% |
| !! | TGCTTGTTTAGAATTCATTT+AGG | - | chr6.2:42582173-42582192 | MS.gene94292:intron | 25.0% |
| !! | TTTAATATCCTCACACTTTT+GGG | - | chr6.2:42583311-42583330 | MS.gene94292:intron | 25.0% |
| !! | TTTAGTTTCCAACAAAGAAA+AGG | + | chr6.2:42584864-42584883 | None:intergenic | 25.0% |
| !! | TTTTGCTAAAAAATTGACTG+AGG | - | chr6.2:42583929-42583948 | MS.gene94292:intron | 25.0% |
| !!! | TTGTTTTGAGAATTTGAGTT+GGG | - | chr6.2:42581098-42581117 | MS.gene94292:intron | 25.0% |
| !!! | TTTGTTTTGAGAATTTGAGT+TGG | - | chr6.2:42581097-42581116 | MS.gene94292:intron | 25.0% |
| !!! | TTTTTTCTAGGTTTACAGTT+GGG | - | chr6.2:42582246-42582265 | MS.gene94292:CDS | 25.0% |
| !!! | TTTTTTTCTAGGTTTACAGT+TGG | - | chr6.2:42582245-42582264 | MS.gene94292:CDS | 25.0% |
| AAACTCACCATACCTAAATT+TGG | - | chr6.2:42583164-42583183 | MS.gene94292:intron | 30.0% | |
| AAACTGTAAGTATGTGAGAA+TGG | + | chr6.2:42583098-42583117 | None:intergenic | 30.0% | |
| AAATGCTAAAACCATAGTCA+GGG | - | chr6.2:42582114-42582133 | MS.gene94292:intron | 30.0% | |
| AACAAGTAGAACTGTTATTG+AGG | - | chr6.2:42581907-42581926 | MS.gene94292:intron | 30.0% | |
| AACAATCTCCAATCTGTAAA+AGG | + | chr6.2:42584359-42584378 | None:intergenic | 30.0% | |
| AATTCTGTCAAAAGAAACAG+TGG | + | chr6.2:42582533-42582552 | None:intergenic | 30.0% | |
| ACAAATAGACTTGTACTTTG+AGG | - | chr6.2:42583140-42583159 | MS.gene94292:CDS | 30.0% | |
| ACTCTCTACAAACTATAATC+AGG | - | chr6.2:42581446-42581465 | MS.gene94292:intron | 30.0% | |
| ATAGACTCTGATATCATCTT+AGG | - | chr6.2:42581366-42581385 | MS.gene94292:intron | 30.0% | |
| ATATGAAGATGAAGGATGAA+AGG | + | chr6.2:42582601-42582620 | None:intergenic | 30.0% | |
| ATCACTAGATAACTTTATGC+GGG | + | chr6.2:42580846-42580865 | None:intergenic | 30.0% | |
| ATGGTAAATTGTGACTTCTT+AGG | - | chr6.2:42580677-42580696 | MS.gene94292:CDS | 30.0% | |
| ATTCTGTCAAAAGAAACAGT+GGG | + | chr6.2:42582532-42582551 | None:intergenic | 30.0% | |
| CATGTAACTTTCTTACATGA+AGG | - | chr6.2:42582070-42582089 | MS.gene94292:CDS | 30.0% | |
| CCAGATTTATATGAAGATGA+AGG | + | chr6.2:42582609-42582628 | None:intergenic | 30.0% | |
| CCTTCATCTTCATATAAATC+TGG | - | chr6.2:42582606-42582625 | MS.gene94292:intron | 30.0% | |
| CTAACTCATCGTTACAAAAT+CGG | - | chr6.2:42581403-42581422 | MS.gene94292:intron | 30.0% | |
| CTATGTAGTGTTATAAAGCT+TGG | + | chr6.2:42581167-42581186 | None:intergenic | 30.0% | |
| CTGATAGTTTGATTAACACA+TGG | + | chr6.2:42582336-42582355 | None:intergenic | 30.0% | |
| GAAGTTTGCATATCTTAACT+GGG | - | chr6.2:42583475-42583494 | MS.gene94292:intron | 30.0% | |
| GAATAAATAAGCCAGCAAAT+AGG | + | chr6.2:42584751-42584770 | None:intergenic | 30.0% | |
| TAAATGCTAAAACCATAGTC+AGG | - | chr6.2:42582113-42582132 | MS.gene94292:intron | 30.0% | |
| TCAATTGAGCAAACAAATCA+TGG | + | chr6.2:42583379-42583398 | None:intergenic | 30.0% | |
| TCCCACATTGATAAAAGATA+AGG | + | chr6.2:42581472-42581491 | None:intergenic | 30.0% | |
| TGAAAATGAAGATGAGAATG+AGG | - | chr6.2:42583671-42583690 | MS.gene94292:intron | 30.0% | |
| TGACCCTGTTCTTATATTAA+TGG | - | chr6.2:42583187-42583206 | MS.gene94292:intron | 30.0% | |
| ! | AAAATATCTGAAGTTGTTGC+AGG | + | chr6.2:42584695-42584714 | None:intergenic | 30.0% |
| ! | AGTCTATTTGTTAGAGTAGA+AGG | + | chr6.2:42583131-42583150 | None:intergenic | 30.0% |
| ! | ATGCAAATTTTGTGACTTCT+TGG | - | chr6.2:42581586-42581605 | MS.gene94292:CDS | 30.0% |
| ! | CAAGCTTTATAACACTACAT+AGG | - | chr6.2:42581165-42581184 | MS.gene94292:intron | 30.0% |
| ! | GAATTTTCTTCAATAAACGC+AGG | + | chr6.2:42584151-42584170 | None:intergenic | 30.0% |
| ! | GCCTTATCTTTTATCAATGT+GGG | - | chr6.2:42581468-42581487 | MS.gene94292:intron | 30.0% |
| ! | TATTTTCATTGCATCAGTTG+AGG | + | chr6.2:42582637-42582656 | None:intergenic | 30.0% |
| ! | TGATTATAGTTTGTAGAGAG+TGG | + | chr6.2:42581447-42581466 | None:intergenic | 30.0% |
| ! | TTAGACTGTTGAGCTTTATA+TGG | - | chr6.2:42581035-42581054 | MS.gene94292:intron | 30.0% |
| ! | TTTCAAAGTAATGTCACTTC+AGG | + | chr6.2:42581531-42581550 | None:intergenic | 30.0% |
| ! | TTTTCTGTCGCACTTTTATT+CGG | - | chr6.2:42584004-42584023 | MS.gene94292:CDS | 30.0% |
| ! | TTTTTGTAGCAAGTCGTAAT+TGG | - | chr6.2:42583519-42583538 | MS.gene94292:intron | 30.0% |
| !! | AATGTGTTTCTAGAAGTAGA+TGG | + | chr6.2:42580822-42580841 | None:intergenic | 30.0% |
| !! | AATTACGACTTGCTACAAAA+AGG | + | chr6.2:42583520-42583539 | None:intergenic | 30.0% |
| !! | AGGTACTAATTTGTTTCACA+AGG | - | chr6.2:42581927-42581946 | MS.gene94292:intron | 30.0% |
| !! | AGTATTTCTAGACACATGAA+AGG | + | chr6.2:42581643-42581662 | None:intergenic | 30.0% |
| !! | ATAAGAAGTAAAAAGTACCC+AGG | - | chr6.2:42581707-42581726 | MS.gene94292:CDS | 30.0% |
| !! | ATATATTTTCAAGCAAAGCC+AGG | - | chr6.2:42582954-42582973 | MS.gene94292:intron | 30.0% |
| !! | GATTGTGGCATATCATTTTT+AGG | - | chr6.2:42582734-42582753 | MS.gene94292:intron | 30.0% |
| !!! | GTATTGATTTTCCTGTTCTT+GGG | - | chr6.2:42582890-42582909 | MS.gene94292:intron | 30.0% |
| !!! | TGTATTGATTTTCCTGTTCT+TGG | - | chr6.2:42582889-42582908 | MS.gene94292:intron | 30.0% |
| AAAGGTTTCTGCAGGTTTAT+AGG | - | chr6.2:42580917-42580936 | MS.gene94292:CDS | 35.0% | |
| ACACTGCTTGATTTACATGA+TGG | - | chr6.2:42582022-42582041 | MS.gene94292:CDS | 35.0% | |
| AGATGATCCAATTGATTGGA+TGG | - | chr6.2:42584084-42584103 | MS.gene94292:CDS | 35.0% | |
| AGTTACATGCTTTGTAGCAT+AGG | + | chr6.2:42582059-42582078 | None:intergenic | 35.0% | |
| ATACAAGTCAGCTAACTTAC+GGG | + | chr6.2:42584412-42584431 | None:intergenic | 35.0% | |
| ATATCCAACAGAGAGACTTA+AGG | + | chr6.2:42585025-42585044 | None:intergenic | 35.0% | |
| ATATCTCATTTGAAAGCTGC+TGG | - | chr6.2:42584975-42584994 | MS.gene94292:intron | 35.0% | |
| ATATTATCAACACTGAACCC+TGG | + | chr6.2:42584798-42584817 | None:intergenic | 35.0% | |
| ATCATGTAAATCAAGCAGTG+TGG | + | chr6.2:42582023-42582042 | None:intergenic | 35.0% | |
| ATCCCAAAGTCAATTTCTGA+TGG | + | chr6.2:42583588-42583607 | None:intergenic | 35.0% | |
| ATGAACATGGAAGTAAGTGA+TGG | - | chr6.2:42582847-42582866 | MS.gene94292:intron | 35.0% | |
| CAAAGTGCATGATCAACTTT+AGG | + | chr6.2:42584473-42584492 | None:intergenic | 35.0% | |
| CAGGAAAATCAATACAGTGT+AGG | + | chr6.2:42582885-42582904 | None:intergenic | 35.0% | |
| CATACAAGTCAGCTAACTTA+CGG | + | chr6.2:42584413-42584432 | None:intergenic | 35.0% | |
| CCATATTTGACAGATGAACA+TGG | - | chr6.2:42582834-42582853 | MS.gene94292:intron | 35.0% | |
| CCATGTTCATCTGTCAAATA+TGG | + | chr6.2:42582837-42582856 | None:intergenic | 35.0% | |
| CGAAGTTTGCATATCTTAAC+TGG | - | chr6.2:42583474-42583493 | MS.gene94292:intron | 35.0% | |
| CTTCAGATGATCCAATTGAT+TGG | - | chr6.2:42584080-42584099 | MS.gene94292:CDS | 35.0% | |
| GAGCAAACAAATCATGGATA+AGG | + | chr6.2:42583373-42583392 | None:intergenic | 35.0% | |
| TAATCAACGATCCTATTTGC+TGG | - | chr6.2:42584737-42584756 | MS.gene94292:intron | 35.0% | |
| TATCCAACAGAGAGACTTAA+GGG | + | chr6.2:42585024-42585043 | None:intergenic | 35.0% | |
| TATTATCAACACTGAACCCT+GGG | + | chr6.2:42584797-42584816 | None:intergenic | 35.0% | |
| TATTGTTGAAGTCCAAAAGG+TGG | + | chr6.2:42583290-42583309 | None:intergenic | 35.0% | |
| TATTTCCTCAAATGGGTGAT+AGG | + | chr6.2:42581837-42581856 | None:intergenic | 35.0% | |
| TCACTAGATAACTTTATGCG+GGG | + | chr6.2:42580845-42580864 | None:intergenic | 35.0% | |
| TCTAACCTTGTAGATAATGC+TGG | - | chr6.2:42583033-42583052 | MS.gene94292:intron | 35.0% | |
| TCTATCGTAGATCTGTTGTT+GGG | + | chr6.2:42581351-42581370 | None:intergenic | 35.0% | |
| TCTGTCAAATATGGCAAATC+TGG | + | chr6.2:42582828-42582847 | None:intergenic | 35.0% | |
| TGAAGATAACGCATCACAAA+AGG | - | chr6.2:42584291-42584310 | MS.gene94292:intron | 35.0% | |
| TGAGAATGAGGATTATGACT+CGG | - | chr6.2:42583683-42583702 | MS.gene94292:intron | 35.0% | |
| TGCACTAGAAAGGAAAATTC+TGG | + | chr6.2:42582370-42582389 | None:intergenic | 35.0% | |
| TGCATATCTTAACTGGGTTA+TGG | - | chr6.2:42583481-42583500 | MS.gene94292:intron | 35.0% | |
| ! | AAAGCTCAACAGTCTAAAGT+AGG | + | chr6.2:42581032-42581051 | None:intergenic | 35.0% |
| ! | AAGCTCAACAGTCTAAAGTA+GGG | + | chr6.2:42581031-42581050 | None:intergenic | 35.0% |
| ! | ACCCTGCACTCAAATTTTAT+CGG | + | chr6.2:42580967-42580986 | None:intergenic | 35.0% |
| ! | ATTCAAGTGTTTTCTGCACA+CGG | - | chr6.2:42584382-42584401 | MS.gene94292:intron | 35.0% |
| ! | CGATTTTGTAACGATGAGTT+AGG | + | chr6.2:42581405-42581424 | None:intergenic | 35.0% |
| ! | CGCACTTTTATTCGGTTTAT+TGG | - | chr6.2:42584012-42584031 | MS.gene94292:CDS | 35.0% |
| ! | GAATAAAAGTGCGACAGAAA+AGG | + | chr6.2:42584005-42584024 | None:intergenic | 35.0% |
| ! | GAGGTATTTCACATGACATT+TGG | + | chr6.2:42580758-42580777 | None:intergenic | 35.0% |
| ! | GTCCATCAGAAATTGACTTT+GGG | - | chr6.2:42583583-42583602 | MS.gene94292:intron | 35.0% |
| ! | TCTTCACAAGTTTGTTTCTC+CGG | + | chr6.2:42581745-42581764 | None:intergenic | 35.0% |
| ! | TCTTTTATCAATGTGGGACT+TGG | - | chr6.2:42581474-42581493 | MS.gene94292:intron | 35.0% |
| ! | TGATCAACTTTAGGAGTTCT+TGG | + | chr6.2:42584464-42584483 | None:intergenic | 35.0% |
| ! | TGTATAGCTGATGATGATTG+TGG | - | chr6.2:42582719-42582738 | MS.gene94292:intron | 35.0% |
| ! | TTCTAGAAGTAGATGGATGA+AGG | + | chr6.2:42580815-42580834 | None:intergenic | 35.0% |
| ! | TTTATGTTCTGATTTTGCGC+AGG | - | chr6.2:42584884-42584903 | MS.gene94292:intron | 35.0% |
| !! | AACTGTAATTTGCCACCTTT+TGG | - | chr6.2:42583275-42583294 | MS.gene94292:intron | 35.0% |
| !! | AGAAATTGACTTTGGGATTG+AGG | - | chr6.2:42583590-42583609 | MS.gene94292:intron | 35.0% |
| !! | GGCCTTATCTTTTATCAATG+TGG | - | chr6.2:42581467-42581486 | MS.gene94292:intron | 35.0% |
| !! | GGCTTCTCATTTTTCTTTAC+AGG | + | chr6.2:42581812-42581831 | None:intergenic | 35.0% |
| !! | GTAACCTAATTTGTGGCTTT+TGG | - | chr6.2:42583963-42583982 | MS.gene94292:intron | 35.0% |
| !!! | GGAAGAACACCTTTTTTTCT+AGG | - | chr6.2:42582234-42582253 | MS.gene94292:CDS | 35.0% |
| !!! | TCAGTGCTATTTTTGTACGA+CGG | - | chr6.2:42581987-42582006 | MS.gene94292:CDS | 35.0% |
| AAAAGGAAGTCTCGTCTGAA+GGG | + | chr6.2:42584342-42584361 | None:intergenic | 40.0% | |
| ACCATTTAACTGCGGAAACT+AGG | + | chr6.2:42585140-42585159 | None:intergenic | 40.0% | |
| ACCCGATAAAATTTGAGTGC+AGG | - | chr6.2:42580962-42580981 | MS.gene94292:CDS | 40.0% | |
| ACTAAATCGACCCCTTTACA+CGG | - | chr6.2:42581210-42581229 | MS.gene94292:intron | 40.0% | |
| ACTACATAGGCCATATCTCT+AGG | - | chr6.2:42581178-42581197 | MS.gene94292:intron | 40.0% | |
| ACTCTCCAGCATTATCTACA+AGG | + | chr6.2:42583041-42583060 | None:intergenic | 40.0% | |
| AGAACAGGGTCACCAAATTT+AGG | + | chr6.2:42583179-42583198 | None:intergenic | 40.0% | |
| AGATAACGCATCACAAAAGG+TGG | - | chr6.2:42584294-42584313 | MS.gene94292:intron | 40.0% | |
| AGGGTCACCAAATTTAGGTA+TGG | + | chr6.2:42583174-42583193 | None:intergenic | 40.0% | |
| ATCCTCACTAATCTCCAATG+TGG | + | chr6.2:42581867-42581886 | None:intergenic | 40.0% | |
| CATCTCAGAGATCATTTCCA+TGG | + | chr6.2:42583553-42583572 | None:intergenic | 40.0% | |
| CCCGATAAAATTTGAGTGCA+GGG | - | chr6.2:42580963-42580982 | MS.gene94292:CDS | 40.0% | |
| CCTTACAAAACTCGCTTGTA+AGG | - | chr6.2:42581131-42581150 | MS.gene94292:intron | 40.0% | |
| GACTGCAAAATATCTTCACC+TGG | + | chr6.2:42582975-42582994 | None:intergenic | 40.0% | |
| GCAGATAGATGCTTCTGTAT+TGG | + | chr6.2:42584175-42584194 | None:intergenic | 40.0% | |
| GCTTGATTTACATGATGGCT+AGG | - | chr6.2:42582027-42582046 | MS.gene94292:CDS | 40.0% | |
| GGTTAACAGCAAAGCAACAA+TGG | - | chr6.2:42582755-42582774 | MS.gene94292:intron | 40.0% | |
| GTCTATCGTAGATCTGTTGT+TGG | + | chr6.2:42581352-42581371 | None:intergenic | 40.0% | |
| GTCTCCAAAAGCCACAAATT+AGG | + | chr6.2:42583970-42583989 | None:intergenic | 40.0% | |
| TAAAAGGAAGTCTCGTCTGA+AGG | + | chr6.2:42584343-42584362 | None:intergenic | 40.0% | |
| TCATTGCATCAGTTGAGGTT+GGG | + | chr6.2:42582632-42582651 | None:intergenic | 40.0% | |
| TCCCACATTTCCTAGAGATA+TGG | + | chr6.2:42581191-42581210 | None:intergenic | 40.0% | |
| TCCTAGTTTCCGCAGTTAAA+TGG | - | chr6.2:42585136-42585155 | MS.gene94292:intron | 40.0% | |
| TCGTGTAGTCTTCTACTTCA+AGG | + | chr6.2:42584914-42584933 | None:intergenic | 40.0% | |
| TCTCTCTGTTGGATATGCAA+GGG | - | chr6.2:42585029-42585048 | MS.gene94292:intron | 40.0% | |
| TCTGTGAGATGGTTTAGATC+AGG | + | chr6.2:42581005-42581024 | None:intergenic | 40.0% | |
| TTATTGTTTGCAGGAATGGC+TGG | - | chr6.2:42583809-42583828 | MS.gene94292:intron | 40.0% | |
| TTCATTGCATCAGTTGAGGT+TGG | + | chr6.2:42582633-42582652 | None:intergenic | 40.0% | |
| TTTACTAATTTCGGCAGTGC+TGG | + | chr6.2:42584206-42584225 | None:intergenic | 40.0% | |
| ! | AGGCAGCTATTTCCTCAAAT+GGG | + | chr6.2:42581844-42581863 | None:intergenic | 40.0% |
| ! | CATGGAAATGATCTCTGAGA+TGG | - | chr6.2:42583551-42583570 | MS.gene94292:intron | 40.0% |
| ! | CCCTGCACTCAAATTTTATC+GGG | + | chr6.2:42580966-42580985 | None:intergenic | 40.0% |
| ! | CGAGACTTCCTTTTACAGAT+TGG | - | chr6.2:42584348-42584367 | MS.gene94292:intron | 40.0% |
| ! | CTTCACAAGTTTGTTTCTCC+GGG | + | chr6.2:42581744-42581763 | None:intergenic | 40.0% |
| ! | GATGCGATTTTCTCATCCAA+TGG | - | chr6.2:42583905-42583924 | MS.gene94292:intron | 40.0% |
| ! | GCCATATCTCTAGGAAATGT+GGG | - | chr6.2:42581187-42581206 | MS.gene94292:intron | 40.0% |
| ! | GGTCCATCAGAAATTGACTT+TGG | - | chr6.2:42583582-42583601 | MS.gene94292:intron | 40.0% |
| ! | GTCTTCGATGCACTTTTGAT+GGG | - | chr6.2:42585090-42585109 | MS.gene94292:intron | 40.0% |
| ! | TAAAAGTGCGACAGAAAAGG+TGG | + | chr6.2:42584002-42584021 | None:intergenic | 40.0% |
| ! | TGTCTTCGATGCACTTTTGA+TGG | - | chr6.2:42585089-42585108 | MS.gene94292:intron | 40.0% |
| ! | TTCACAAGTTTGTTTCTCCG+GGG | + | chr6.2:42581743-42581762 | None:intergenic | 40.0% |
| !! | AAGCGAGTTTTGTAAGGTTG+AGG | + | chr6.2:42581128-42581147 | None:intergenic | 40.0% |
| !! | AGCGAGTTTTGTAAGGTTGA+GGG | + | chr6.2:42581127-42581146 | None:intergenic | 40.0% |
| !! | ATCTCTGAGATGGACTTATC+AGG | - | chr6.2:42583561-42583580 | MS.gene94292:intron | 40.0% |
| !! | CCTTACAAGCGAGTTTTGTA+AGG | + | chr6.2:42581134-42581153 | None:intergenic | 40.0% |
| !! | CGTTACAAAATCGGCTTGTA+AGG | - | chr6.2:42581412-42581431 | MS.gene94292:intron | 40.0% |
| !! | GAAAGTGTTGGTGCGATTAA+TGG | - | chr6.2:42584244-42584263 | MS.gene94292:intron | 40.0% |
| !! | GATATGCAAGGGTATTCAAG+TGG | - | chr6.2:42585040-42585059 | MS.gene94292:intron | 40.0% |
| !! | TGTTAATACCTTTTGGAGGC+AGG | + | chr6.2:42582203-42582222 | None:intergenic | 40.0% |
| AACACCTTCACCGTGTAAAG+GGG | + | chr6.2:42581223-42581242 | None:intergenic | 45.0% | |
| AAGCCCTTAAGTCTCTCTGT+TGG | - | chr6.2:42585018-42585037 | MS.gene94292:intron | 45.0% | |
| AAGTAGGGATGTCTGTGAGA+TGG | + | chr6.2:42581016-42581035 | None:intergenic | 45.0% | |
| ACAACATCCTAGCTCAGATC+AGG | - | chr6.2:42581784-42581803 | MS.gene94292:CDS | 45.0% | |
| ACTTGCAGACTGGGCAAAAT+TGG | - | chr6.2:42583878-42583897 | MS.gene94292:intron | 45.0% | |
| ATATGAGGTATGACCTACCC+AGG | - | chr6.2:42584777-42584796 | MS.gene94292:intron | 45.0% | |
| CAAAACAGGCTGCACTAGAA+AGG | + | chr6.2:42582380-42582399 | None:intergenic | 45.0% | |
| CAACACCTTCACCGTGTAAA+GGG | + | chr6.2:42581224-42581243 | None:intergenic | 45.0% | |
| CGCGCAAAACCATTTAACTG+CGG | + | chr6.2:42585148-42585167 | None:intergenic | 45.0% | |
| CGTAATTGGTGTGGATACCA+TGG | - | chr6.2:42583533-42583552 | MS.gene94292:intron | 45.0% | |
| CTCAACCTGATGCTATTGCA+AGG | - | chr6.2:42584937-42584956 | MS.gene94292:intron | 45.0% | |
| CTCACTAATCTCCAATGTGG+AGG | + | chr6.2:42581864-42581883 | None:intergenic | 45.0% | |
| CTCCACATTGGAGATTAGTG+AGG | - | chr6.2:42581862-42581881 | MS.gene94292:intron | 45.0% | |
| GATGACCTTGCAATAGCATC+AGG | + | chr6.2:42584945-42584964 | None:intergenic | 45.0% | |
| GCAGGTTTATAGGCAGTTTC+AGG | - | chr6.2:42580927-42580946 | MS.gene94292:CDS | 45.0% | |
| GTAGCAAGTCGTAATTGGTG+TGG | - | chr6.2:42583524-42583543 | MS.gene94292:intron | 45.0% | |
| GTCTCTCTGTTGGATATGCA+AGG | - | chr6.2:42585028-42585047 | MS.gene94292:intron | 45.0% | |
| TAGGATTACCTGCCTCCAAA+AGG | - | chr6.2:42582192-42582211 | MS.gene94292:intron | 45.0% | |
| TATGAGGTATGACCTACCCA+GGG | - | chr6.2:42584778-42584797 | MS.gene94292:intron | 45.0% | |
| TCCTCAAATGGGTGATAGGA+TGG | + | chr6.2:42581833-42581852 | None:intergenic | 45.0% | |
| TGAAACGGAAACCCTGACTA+TGG | + | chr6.2:42582128-42582147 | None:intergenic | 45.0% | |
| TTGGAAATTCCGCCTACTTG+CGG | + | chr6.2:42581275-42581294 | None:intergenic | 45.0% | |
| ! | ACAACAAGCCCAAAAGTGTG+AGG | + | chr6.2:42583322-42583341 | None:intergenic | 45.0% |
| ! | ACGCAGGTCTTATAACTCCT+TGG | + | chr6.2:42584135-42584154 | None:intergenic | 45.0% |
| ! | AGTTTGTTTCTCCGGGGAAA+TGG | + | chr6.2:42581737-42581756 | None:intergenic | 45.0% |
| ! | ATGATGAAGCACTTGCAGAC+TGG | - | chr6.2:42583868-42583887 | MS.gene94292:intron | 45.0% |
| ! | GAGGCAGCTATTTCCTCAAA+TGG | + | chr6.2:42581845-42581864 | None:intergenic | 45.0% |
| ! | GGCCATATCTCTAGGAAATG+TGG | - | chr6.2:42581186-42581205 | MS.gene94292:intron | 45.0% |
| ! | TGATGAAGCACTTGCAGACT+GGG | - | chr6.2:42583869-42583888 | MS.gene94292:intron | 45.0% |
| !! | AAATCGGCTTGTAAGGTGAG+CGG | - | chr6.2:42581419-42581438 | MS.gene94292:intron | 45.0% |
| !! | AGCCTGAAGTGTTGACAATG+CGG | - | chr6.2:42581320-42581339 | MS.gene94292:intron | 45.0% |
| !! | ATGCAAGGGTATTCAAGTGG+AGG | - | chr6.2:42585043-42585062 | MS.gene94292:intron | 45.0% |
| !! | CAGTTAAATGGTTTTGCGCG+CGG | - | chr6.2:42585148-42585167 | MS.gene94292:intron | 45.0% |
| !!! | TACTTGCGGCATTTTGGGTT+GGG | + | chr6.2:42581261-42581280 | None:intergenic | 45.0% |
| ATCAACACTGAACCCTGGGT+AGG | + | chr6.2:42584793-42584812 | None:intergenic | 50.0% | |
| CAACCCAAAATGCCGCAAGT+AGG | - | chr6.2:42581260-42581279 | MS.gene94292:intron | 50.0% | |
| CCAACACCTTCACCGTGTAA+AGG | + | chr6.2:42581225-42581244 | None:intergenic | 50.0% | |
| CCAGCTTGTGTAGTCTTCCA+AGG | - | chr6.2:42584115-42584134 | MS.gene94292:CDS | 50.0% | |
| CCTTGGAAGACTACACAAGC+TGG | + | chr6.2:42584118-42584137 | None:intergenic | 50.0% | |
| GCCATCCTATCACCCATTTG+AGG | - | chr6.2:42581829-42581848 | MS.gene94292:intron | 50.0% | |
| GGAAATAGCTGCCTCCACAT+TGG | - | chr6.2:42581850-42581869 | MS.gene94292:intron | 50.0% | |
| GGCTGCTCCATCCAATCAAT+TGG | + | chr6.2:42584094-42584113 | None:intergenic | 50.0% | |
| GGGTGAAACTTCCCAAGAAC+AGG | + | chr6.2:42582904-42582923 | None:intergenic | 50.0% | |
| TGGAAGACTACACAAGCTGG+AGG | + | chr6.2:42584115-42584134 | None:intergenic | 50.0% | |
| ! | CCTTTACACGGTGAAGGTGT+TGG | - | chr6.2:42581222-42581241 | MS.gene94292:intron | 50.0% |
| ! | TTCGGCAGTGCTGGATTGAT+TGG | + | chr6.2:42584197-42584216 | None:intergenic | 50.0% |
| !! | CCTGAAGTGTTGACAATGCG+GGG | - | chr6.2:42581322-42581341 | MS.gene94292:intron | 50.0% |
| !! | CGCGCGGCTTTAGTGTATTT+TGG | - | chr6.2:42585164-42585183 | MS.gene94292:intron | 50.0% |
| !! | CTACTTGCGGCATTTTGGGT+TGG | + | chr6.2:42581262-42581281 | None:intergenic | 50.0% |
| !! | GCCTGAAGTGTTGACAATGC+GGG | - | chr6.2:42581321-42581340 | MS.gene94292:intron | 50.0% |
| !! | TTACACGGTGAAGGTGTTGG+AGG | - | chr6.2:42581225-42581244 | MS.gene94292:intron | 50.0% |
| ACAGGCTCCTGATCTGAGCT+AGG | + | chr6.2:42581794-42581813 | None:intergenic | 55.0% | |
| CCCAAAATGCCGCAAGTAGG+CGG | - | chr6.2:42581263-42581282 | MS.gene94292:intron | 55.0% | |
| CCCCGCATTGTCAACACTTC+AGG | + | chr6.2:42581325-42581344 | None:intergenic | 55.0% | |
| TCGACCCCTTTACACGGTGA+AGG | - | chr6.2:42581216-42581235 | MS.gene94292:intron | 55.0% | |
| ! | CCGCCTACTTGCGGCATTTT+GGG | + | chr6.2:42581266-42581285 | None:intergenic | 55.0% |
| ! | TCCGCCTACTTGCGGCATTT+TGG | + | chr6.2:42581267-42581286 | None:intergenic | 55.0% |
| ACCCAGGCACTCCATTTCCC+CGG | - | chr6.2:42581723-42581742 | MS.gene94292:CDS | 60.0% | |
| CTCATTACCCGAGCGTGAGC+GGG | + | chr6.2:42581302-42581321 | None:intergenic | 60.0% | |
| GCTCATTACCCGAGCGTGAG+CGG | + | chr6.2:42581303-42581322 | None:intergenic | 60.0% | |
| ! | TCCGGGGAAATGGAGTGCCT+GGG | + | chr6.2:42581727-42581746 | None:intergenic | 60.0% |
| CAACACACCCGCTCACGCTC+GGG | - | chr6.2:42581292-42581311 | MS.gene94292:intron | 65.0% | |
| CCAACACACCCGCTCACGCT+CGG | - | chr6.2:42581291-42581310 | MS.gene94292:intron | 65.0% | |
| ! | CTCCGGGGAAATGGAGTGCC+TGG | + | chr6.2:42581728-42581747 | None:intergenic | 65.0% |
| CCGAGCGTGAGCGGGTGTGT+TGG | + | chr6.2:42581294-42581313 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 42580677 | 42585246 | 42580677 | ID=MS.gene94292 |
| chr6.2 | mRNA | 42580677 | 42585246 | 42580677 | ID=MS.gene94292.t1;Parent=MS.gene94292 |
| chr6.2 | exon | 42585205 | 42585246 | 42585205 | ID=MS.gene94292.t1.exon1;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42585205 | 42585246 | 42585205 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42585126 | 42585130 | 42585126 | ID=MS.gene94292.t1.exon2;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42585126 | 42585130 | 42585126 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42583995 | 42584217 | 42583995 | ID=MS.gene94292.t1.exon3;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42583995 | 42584217 | 42583995 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42583065 | 42583167 | 42583065 | ID=MS.gene94292.t1.exon4;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42583065 | 42583167 | 42583065 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42582904 | 42582971 | 42582904 | ID=MS.gene94292.t1.exon5;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42582904 | 42582971 | 42582904 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42582219 | 42582395 | 42582219 | ID=MS.gene94292.t1.exon6;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42582219 | 42582395 | 42582219 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42581973 | 42582101 | 42581973 | ID=MS.gene94292.t1.exon7;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42581973 | 42582101 | 42581973 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42581512 | 42581847 | 42581512 | ID=MS.gene94292.t1.exon8;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42581512 | 42581847 | 42581512 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42580859 | 42581017 | 42580859 | ID=MS.gene94292.t1.exon9;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42580859 | 42581017 | 42580859 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| chr6.2 | exon | 42580677 | 42580781 | 42580677 | ID=MS.gene94292.t1.exon10;Parent=MS.gene94292.t1 |
| chr6.2 | CDS | 42580677 | 42580781 | 42580677 | ID=cds.MS.gene94292.t1;Parent=MS.gene94292.t1 |
| Gene Sequence |
| Protein sequence |
