Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95469.t1 | ACJ85460.1 | 100 | 198 | 0 | 0 | 1 | 198 | 20 | 217 | 4.90E-104 | 387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95469.t1 | Q93VI4 | 79.3 | 188 | 37 | 2 | 12 | 198 | 41 | 227 | 7.4e-77 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95469.t1 | B7FL26 | 100.0 | 198 | 0 | 0 | 1 | 198 | 20 | 217 | 3.5e-104 | 387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene95469 | 0.831006 | 2.13E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene95469 | 0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene95469 | 0.808104 | 3.65E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene95469 | 0.83262 | 8.52E-56 | -1.69E-46 |
| MS.gene049861 | MS.gene95469 | 0.822502 | 2.29E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene95469 | 0.804861 | 1.76E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene95469 | 0.837024 | 6.63E-57 | -1.69E-46 |
| MS.gene050277 | MS.gene95469 | 0.818482 | 1.92E-52 | -1.69E-46 |
| MS.gene050288 | MS.gene95469 | 0.835783 | 1.37E-56 | -1.69E-46 |
| MS.gene050317 | MS.gene95469 | 0.836641 | 8.31E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene95469 | 0.838557 | 2.68E-57 | -1.69E-46 |
| MS.gene050752 | MS.gene95469 | 0.831361 | 1.74E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene95469 | 0.82393 | 1.06E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene95469 | 0.821306 | 4.33E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene95469 | 0.847705 | 9.76E-60 | -1.69E-46 |
| MS.gene051063 | MS.gene95469 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene95469 | 0.800678 | 1.29E-48 | -1.69E-46 |
| MS.gene051330 | MS.gene95469 | 0.81723 | 3.67E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene95469 | 0.85229 | 5.09E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene95469 | 0.820324 | 7.29E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene95469 | 0.811876 | 5.62E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene95469 | 0.824809 | 6.60E-54 | -1.69E-46 |
| MS.gene051756 | MS.gene95469 | 0.834889 | 2.31E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene95469 | 0.832853 | 7.46E-56 | -1.69E-46 |
| MS.gene051902 | MS.gene95469 | 0.827239 | 1.75E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene95469 | 0.86838 | 6.82E-66 | -1.69E-46 |
| MS.gene051975 | MS.gene95469 | 0.867297 | 1.52E-65 | -1.69E-46 |
| MS.gene052434 | MS.gene95469 | 0.81747 | 3.24E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene95469 | 0.821706 | 3.50E-53 | -1.69E-46 |
| MS.gene052818 | MS.gene95469 | -0.820007 | 8.61E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene95469 | 0.823349 | 1.45E-53 | -1.69E-46 |
| MS.gene053045 | MS.gene95469 | 0.808319 | 3.28E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene95469 | 0.848354 | 6.47E-60 | -1.69E-46 |
| MS.gene053109 | MS.gene95469 | 0.836697 | 8.04E-57 | -1.69E-46 |
| MS.gene053298 | MS.gene95469 | 0.81369 | 2.25E-51 | -1.69E-46 |
| MS.gene053564 | MS.gene95469 | 0.833723 | 4.53E-56 | -1.69E-46 |
| MS.gene053952 | MS.gene95469 | 0.829775 | 4.26E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene95469 | 0.824452 | 8.01E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene95469 | 0.83356 | 4.97E-56 | -1.69E-46 |
| MS.gene054536 | MS.gene95469 | 0.814296 | 1.66E-51 | -1.69E-46 |
| MS.gene05469 | MS.gene95469 | 0.839275 | 1.75E-57 | -1.69E-46 |
| MS.gene055311 | MS.gene95469 | 0.833699 | 4.59E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene95469 | 0.817089 | 3.95E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene95469 | 0.834603 | 2.72E-56 | -1.69E-46 |
| MS.gene055424 | MS.gene95469 | 0.820003 | 8.63E-53 | -1.69E-46 |
| MS.gene055441 | MS.gene95469 | 0.807393 | 5.17E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene95469 | 0.841617 | 4.26E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene95469 | 0.815339 | 9.72E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene95469 | 0.842076 | 3.22E-58 | -1.69E-46 |
| MS.gene056580 | MS.gene95469 | 0.81064 | 1.04E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene95469 | 0.847026 | 1.50E-59 | -1.69E-46 |
| MS.gene056631 | MS.gene95469 | 0.825242 | 5.22E-54 | -1.69E-46 |
| MS.gene056752 | MS.gene95469 | 0.804022 | 2.64E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene95469 | 0.848999 | 4.28E-60 | -1.69E-46 |
| MS.gene056849 | MS.gene95469 | 0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene05689 | MS.gene95469 | 0.805778 | 1.13E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene95469 | 0.885041 | 1.14E-71 | -1.69E-46 |
| MS.gene057094 | MS.gene95469 | 0.85479 | 9.74E-62 | -1.69E-46 |
| MS.gene057102 | MS.gene95469 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene057234 | MS.gene95469 | 0.847894 | 8.66E-60 | -1.69E-46 |
| MS.gene057452 | MS.gene95469 | -0.832428 | 9.51E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene95469 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene95469 | 0.884848 | 1.35E-71 | -1.69E-46 |
| MS.gene057890 | MS.gene95469 | -0.804828 | 1.79E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene95469 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene057999 | MS.gene95469 | 0.878488 | 2.70E-69 | -1.69E-46 |
| MS.gene058054 | MS.gene95469 | 0.805258 | 1.46E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene95469 | 0.80961 | 1.74E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene95469 | 0.825939 | 3.57E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene95469 | 0.869132 | 3.89E-66 | -1.69E-46 |
| MS.gene058654 | MS.gene95469 | 0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene95469 | 0.838297 | 3.13E-57 | -1.69E-46 |
| MS.gene059227 | MS.gene95469 | 0.823888 | 1.09E-53 | -1.69E-46 |
| MS.gene059360 | MS.gene95469 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene95469 | 0.832414 | 9.58E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene95469 | 0.834258 | 3.33E-56 | -1.69E-46 |
| MS.gene06010 | MS.gene95469 | 0.802912 | 4.48E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene95469 | 0.882864 | 7.28E-71 | -1.69E-46 |
| MS.gene060297 | MS.gene95469 | 0.840113 | 1.06E-57 | -1.69E-46 |
| MS.gene060365 | MS.gene95469 | 0.807446 | 5.04E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene95469 | 0.82366 | 1.23E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene95469 | 0.843265 | 1.56E-58 | -1.69E-46 |
| MS.gene060830 | MS.gene95469 | 0.833962 | 3.95E-56 | -1.69E-46 |
| MS.gene060869 | MS.gene95469 | 0.809939 | 1.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95469.t1 | MTR_1g073000 | 100.000 | 168 | 0 | 0 | 1 | 168 | 20 | 187 | 6.80e-123 | 345 |
| MS.gene95469.t1 | MTR_8g089990 | 66.502 | 203 | 56 | 3 | 6 | 198 | 15 | 215 | 2.27e-92 | 269 |
| MS.gene95469.t1 | MTR_4g094260 | 68.947 | 190 | 52 | 3 | 16 | 198 | 9 | 198 | 1.48e-88 | 258 |
| MS.gene95469.t1 | MTR_1g069140 | 69.375 | 160 | 48 | 1 | 39 | 198 | 125 | 283 | 8.46e-62 | 194 |
| MS.gene95469.t1 | MTR_1g069140 | 69.375 | 160 | 48 | 1 | 39 | 198 | 134 | 292 | 1.32e-61 | 193 |
| MS.gene95469.t1 | MTR_1g049070 | 57.463 | 134 | 45 | 2 | 70 | 198 | 24 | 150 | 1.61e-46 | 150 |
| MS.gene95469.t1 | MTR_3g028140 | 36.264 | 182 | 103 | 7 | 21 | 192 | 451 | 629 | 1.39e-21 | 92.0 |
| MS.gene95469.t1 | MTR_3g028140 | 37.879 | 132 | 75 | 2 | 21 | 145 | 451 | 582 | 5.08e-19 | 84.7 |
| MS.gene95469.t1 | MTR_8g037000 | 36.429 | 140 | 76 | 6 | 61 | 192 | 624 | 758 | 5.01e-15 | 73.2 |
| MS.gene95469.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 70 | 150 | 324 | 404 | 5.14e-11 | 61.2 |
| MS.gene95469.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 70 | 150 | 336 | 416 | 5.16e-11 | 61.2 |
| MS.gene95469.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 70 | 150 | 359 | 439 | 5.79e-11 | 61.2 |
| MS.gene95469.t1 | MTR_4g074930 | 34.568 | 81 | 53 | 0 | 70 | 150 | 371 | 451 | 5.98e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95469.t1 | AT5G51120 | 78.804 | 184 | 37 | 2 | 16 | 198 | 45 | 227 | 5.56e-103 | 296 |
| MS.gene95469.t1 | AT5G10350 | 70.000 | 200 | 56 | 3 | 3 | 198 | 17 | 216 | 1.18e-95 | 277 |
| MS.gene95469.t1 | AT5G51120 | 64.706 | 221 | 40 | 2 | 16 | 198 | 45 | 265 | 6.12e-95 | 277 |
| MS.gene95469.t1 | AT5G65260 | 70.297 | 202 | 55 | 3 | 1 | 198 | 19 | 219 | 1.15e-94 | 275 |
| MS.gene95469.t1 | AT5G10350 | 70.430 | 186 | 51 | 3 | 3 | 184 | 17 | 202 | 3.02e-87 | 255 |
| MS.gene95469.t1 | AT5G51120 | 82.014 | 139 | 24 | 1 | 61 | 198 | 4 | 142 | 9.55e-81 | 237 |
| MS.gene95469.t1 | AT5G10350 | 71.579 | 95 | 23 | 3 | 108 | 198 | 1 | 95 | 1.30e-39 | 131 |
| MS.gene95469.t1 | AT5G10350 | 71.579 | 95 | 23 | 3 | 108 | 198 | 1 | 95 | 1.30e-39 | 131 |
| MS.gene95469.t1 | AT5G10350 | 71.579 | 95 | 23 | 3 | 108 | 198 | 1 | 95 | 1.30e-39 | 131 |
| MS.gene95469.t1 | AT5G10350 | 71.579 | 95 | 23 | 3 | 108 | 198 | 1 | 95 | 1.30e-39 | 131 |
| MS.gene95469.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 70 | 146 | 467 | 544 | 1.34e-12 | 66.2 |
| MS.gene95469.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 70 | 146 | 475 | 552 | 1.49e-12 | 65.9 |
| MS.gene95469.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 70 | 146 | 499 | 576 | 1.52e-12 | 65.9 |
| MS.gene95469.t1 | AT3G12640 | 39.744 | 78 | 46 | 1 | 70 | 146 | 499 | 576 | 1.52e-12 | 65.9 |
| MS.gene95469.t1 | AT2G24350 | 32.857 | 140 | 80 | 6 | 16 | 146 | 254 | 388 | 3.65e-11 | 61.6 |
| MS.gene95469.t1 | AT2G24350 | 32.857 | 140 | 80 | 6 | 16 | 146 | 383 | 517 | 6.10e-11 | 61.2 |
Find 47 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGACAGACAAATT+TGG | 0.277446 | 1.3:+52554484 | MS.gene95469:CDS |
| AAATGCTGTTGGACTTCTTC+AGG | 0.339186 | 1.3:-52554433 | None:intergenic |
| GTTGAGAATAAGAACTAGTA+TGG | 0.363623 | 1.3:-52555991 | None:intergenic |
| TCTTTCCACCATATGCTTAC+GGG | 0.386901 | 1.3:+52554787 | MS.gene95469:CDS |
| GCAAAACGTACAAATGTTCC+TGG | 0.402106 | 1.3:+52554699 | MS.gene95469:CDS |
| TTCTTTCCACCATATGCTTA+CGG | 0.403589 | 1.3:+52554786 | MS.gene95469:CDS |
| TCTACATAAGCAAATCCTTT+CGG | 0.404767 | 1.3:-52554511 | None:intergenic |
| CCTAACCTTGGTGGTGTGAT+TGG | 0.419662 | 1.3:-52551788 | None:intergenic |
| TTCTGTATCTCAAGCTGAAA+AGG | 0.437005 | 1.3:+52552137 | MS.gene95469:CDS |
| CTTCCGTACTGCTTCAATCC+AGG | 0.447125 | 1.3:-52554717 | None:intergenic |
| AAAGAGATGGGCGCTGTTCA+AGG | 0.456481 | 1.3:+52551964 | MS.gene95469:CDS |
| CTGCTGGTTTCCGCGGTAGG+AGG | 0.481689 | 1.3:+52554745 | MS.gene95469:CDS |
| ATAGAAGACCCACCCGATAC+AGG | 0.483334 | 1.3:+52555968 | MS.gene95469:CDS |
| TCAAGCTGAAAAGGAGGAAG+TGG | 0.486267 | 1.3:+52552146 | MS.gene95469:CDS |
| CTCCTACCGCGGAAACCAGC+AGG | 0.495710 | 1.3:-52554744 | None:intergenic |
| AGAACTAGTATGGCCTGTAT+CGG | 0.496323 | 1.3:-52555981 | None:intergenic |
| ATAGCTTACCCGTAAGCATA+TGG | 0.502661 | 1.3:-52554795 | None:intergenic |
| GAACTAGTATGGCCTGTATC+GGG | 0.512109 | 1.3:-52555980 | None:intergenic |
| AAGAATGGTGCAGGCATGAA+AGG | 0.514431 | 1.3:-52554768 | None:intergenic |
| TTAAATGAAACTGAATTGCA+TGG | 0.518323 | 1.3:+52554571 | MS.gene95469:CDS |
| TAAGCATATGGTGGAAAGAA+TGG | 0.526698 | 1.3:-52554783 | None:intergenic |
| CACAGGACTGAAAATGCTGT+TGG | 0.529319 | 1.3:-52554444 | None:intergenic |
| GACAAATTTGGTCAACCGAA+AGG | 0.538920 | 1.3:+52554496 | MS.gene95469:CDS |
| TATGGTGGAAAGAATGGTGC+AGG | 0.545682 | 1.3:-52554777 | None:intergenic |
| CGGGTGGGTCTTCTATATCT+CGG | 0.548551 | 1.3:-52555961 | None:intergenic |
| GCATGAAAGGCCTCCTACCG+CGG | 0.549694 | 1.3:-52554755 | None:intergenic |
| AACCCTAACCCTAACCTTGG+TGG | 0.550125 | 1.3:-52551797 | None:intergenic |
| GACTCTGTTCACAGTACCAC+AGG | 0.550448 | 1.3:-52554461 | None:intergenic |
| ATTGCATGGCCGACAGCTGA+AGG | 0.563098 | 1.3:+52554585 | MS.gene95469:CDS |
| CAGTACGGAAGAAGACCTGC+TGG | 0.568352 | 1.3:+52554729 | MS.gene95469:CDS |
| GACCTGCTGGTTTCCGCGGT+AGG | 0.570934 | 1.3:+52554742 | MS.gene95469:CDS |
| AGCTAAGGTTGAGAAAGAGA+TGG | 0.576917 | 1.3:+52551951 | MS.gene95469:CDS |
| GATGCTCGATCGATCTATGT+TGG | 0.582767 | 1.3:+52552168 | MS.gene95469:CDS |
| GCTAAGGTTGAGAAAGAGAT+GGG | 0.591216 | 1.3:+52551952 | MS.gene95469:CDS |
| TTGATGTTCAGCATCTATGT+CGG | 0.596596 | 1.3:-52551743 | None:intergenic |
| CTAGTATGGCCTGTATCGGG+TGG | 0.600648 | 1.3:-52555977 | None:intergenic |
| GTTCCTGGATTGAAGCAGTA+CGG | 0.610328 | 1.3:+52554714 | MS.gene95469:CDS |
| TCTTCGCGAAATGCAAGCTA+AGG | 0.612879 | 1.3:+52551936 | MS.gene95469:CDS |
| TGTATCTCAAGCTGAAAAGG+AGG | 0.614985 | 1.3:+52552140 | MS.gene95469:CDS |
| TGAGATACAGAAGACCCAGC+AGG | 0.620132 | 1.3:-52552126 | None:intergenic |
| AATTGGAGGATATGAAGAAG+AGG | 0.623414 | 1.3:+52551884 | MS.gene95469:CDS |
| AGAAGACCTGCTGGTTTCCG+CGG | 0.627211 | 1.3:+52554738 | MS.gene95469:CDS |
| TAGTATGGCCTGTATCGGGT+GGG | 0.627864 | 1.3:-52555976 | None:intergenic |
| GCTTACCCGTAAGCATATGG+TGG | 0.644904 | 1.3:-52554792 | None:intergenic |
| GAAGAGGCTGAAAGAGATCG+AGG | 0.648698 | 1.3:+52551900 | MS.gene95469:CDS |
| CGCATCCAATCACACCACCA+AGG | 0.672127 | 1.3:+52551783 | MS.gene95469:CDS |
| ATAGATGCTGAACATCAAGA+AGG | 0.684507 | 1.3:+52551748 | MS.gene95469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAACATGTAAATATT+TGG | - | chr1.3:52553907-52553926 | None:intergenic | 10.0% |
| !! | TTAATCATAAATAAAATCAA+AGG | - | chr1.3:52552212-52552231 | None:intergenic | 10.0% |
| !!! | AAAATGTTTTTATTTATTCA+CGG | + | chr1.3:52555885-52555904 | MS.gene95469:intron | 10.0% |
| !!! | AAGATAGTTTTTTTAAAAAA+TGG | - | chr1.3:52553004-52553023 | None:intergenic | 10.0% |
| !!! | AATGTTGATTTAATTTTTTT+TGG | + | chr1.3:52552485-52552504 | MS.gene95469:intron | 10.0% |
| !!! | ATGTTGATTTAATTTTTTTT+GGG | + | chr1.3:52552486-52552505 | MS.gene95469:intron | 10.0% |
| !! | AATAATTAAACATAAAGCAT+GGG | - | chr1.3:52555911-52555930 | None:intergenic | 15.0% |
| !! | AATTTAATGTTTGGATTATT+GGG | + | chr1.3:52552435-52552454 | MS.gene95469:intron | 15.0% |
| !! | ATAATTCAATTAAAACCAAA+TGG | - | chr1.3:52554659-52554678 | None:intergenic | 15.0% |
| !! | TAATAATTAAACATAAAGCA+TGG | - | chr1.3:52555912-52555931 | None:intergenic | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | + | chr1.3:52553591-52553610 | MS.gene95469:intron | 15.0% |
| !! | TTAAAAAAACTATCTTGAAA+AGG | + | chr1.3:52553008-52553027 | MS.gene95469:intron | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | + | chr1.3:52553590-52553609 | MS.gene95469:intron | 15.0% |
| !! | TTTAAAAAATTTGGATGATA+TGG | - | chr1.3:52553861-52553880 | None:intergenic | 15.0% |
| !!! | AAATGTTCTAAATTCTAATA+GGG | - | chr1.3:52552749-52552768 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTAATTGAATTA+TGG | + | chr1.3:52554658-52554677 | MS.gene95469:intron | 15.0% |
| !!! | TAGATAGATCTAAAATTATA+TGG | + | chr1.3:52554102-52554121 | MS.gene95469:intron | 15.0% |
| !!! | TAGTTTTTTTAAAAAATGGA+AGG | - | chr1.3:52553000-52553019 | None:intergenic | 15.0% |
| !!! | TGTTGATTTAATTTTTTTTG+GGG | + | chr1.3:52552487-52552506 | MS.gene95469:intron | 15.0% |
| !! | AAAACTGTATATATACTTGT+TGG | - | chr1.3:52555175-52555194 | None:intergenic | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | - | chr1.3:52553527-52553546 | None:intergenic | 20.0% |
| !! | AAATTAATGAAAAGTGAAAC+AGG | - | chr1.3:52552904-52552923 | None:intergenic | 20.0% |
| !! | AATATTAAAAAAACAAAGCC+TGG | - | chr1.3:52555852-52555871 | None:intergenic | 20.0% |
| !! | ATAGTAATACATCTAATGAT+AGG | + | chr1.3:52555001-52555020 | MS.gene95469:intron | 20.0% |
| !! | ATATTTAGAAACAACTTGTA+CGG | + | chr1.3:52555532-52555551 | MS.gene95469:intron | 20.0% |
| !! | ATTTAAATAAAACTAGTGGA+TGG | + | chr1.3:52554965-52554984 | MS.gene95469:intron | 20.0% |
| !! | CGATATTTAAATAAAACTAG+TGG | + | chr1.3:52554961-52554980 | MS.gene95469:intron | 20.0% |
| !! | CTATTTAACAACACTTAATT+CGG | - | chr1.3:52553250-52553269 | None:intergenic | 20.0% |
| !! | GAATTTAATGTTTGGATTAT+TGG | + | chr1.3:52552434-52552453 | MS.gene95469:intron | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | - | chr1.3:52553528-52553547 | None:intergenic | 20.0% |
| !! | TAGCTTATTCTGATATAATA+AGG | + | chr1.3:52555438-52555457 | MS.gene95469:intron | 20.0% |
| !! | TAGGTTAAGAATTTAATGTT+TGG | + | chr1.3:52552426-52552445 | MS.gene95469:intron | 20.0% |
| !! | TATGAAAGATTATGAAATAG+CGG | + | chr1.3:52553346-52553365 | MS.gene95469:intron | 20.0% |
| !! | TTAAATCTCAAAAACTTCAA+CGG | + | chr1.3:52554352-52554371 | MS.gene95469:intron | 20.0% |
| !! | TTTAAGCACTTAAATTTCAT+GGG | + | chr1.3:52554020-52554039 | MS.gene95469:intron | 20.0% |
| !!! | AACAAGTATATATACAGTTT+TGG | + | chr1.3:52555174-52555193 | MS.gene95469:intron | 20.0% |
| !!! | AATGTCGATTTTTGTTTTTT+TGG | + | chr1.3:52552625-52552644 | MS.gene95469:intron | 20.0% |
| !!! | AATGTTCTAAATTCTAATAG+GGG | - | chr1.3:52552748-52552767 | None:intergenic | 20.0% |
| !!! | AATTTTATTTTTAGAGTGTG+TGG | + | chr1.3:52552919-52552938 | MS.gene95469:intron | 20.0% |
| !!! | ATGTCGATTTTTGTTTTTTT+GGG | + | chr1.3:52552626-52552645 | MS.gene95469:intron | 20.0% |
| !!! | ATGTTTACTTTTTGTGTAAA+TGG | + | chr1.3:52554920-52554939 | MS.gene95469:intron | 20.0% |
| !!! | CAAATGTTCTAAATTCTAAT+AGG | - | chr1.3:52552750-52552769 | None:intergenic | 20.0% |
| !!! | CTATTAGAATTTAGAACATT+TGG | + | chr1.3:52552748-52552767 | MS.gene95469:intron | 20.0% |
| !!! | GTTGATTTAATTTTTTTTGG+GGG | + | chr1.3:52552488-52552507 | MS.gene95469:intron | 20.0% |
| !!! | TAATTTTAGATCTATCTAGA+TGG | - | chr1.3:52554100-52554119 | None:intergenic | 20.0% |
| !!! | TTTTAAGCACTTAAATTTCA+TGG | + | chr1.3:52554019-52554038 | MS.gene95469:intron | 20.0% |
| !!! | TTTTTGAGATTTAAATGACA+TGG | - | chr1.3:52554346-52554365 | None:intergenic | 20.0% |
| ! | AAAAATGCATTAGATATGTG+AGG | - | chr1.3:52554301-52554320 | None:intergenic | 25.0% |
| ! | AAAATGCATTAGATATGTGA+GGG | - | chr1.3:52554300-52554319 | None:intergenic | 25.0% |
| ! | ACAATATTGACAGACAAATT+TGG | + | chr1.3:52554484-52554503 | MS.gene95469:CDS | 25.0% |
| ! | ACTAAAATAGTTAGAGGAAT+AGG | + | chr1.3:52554048-52554067 | MS.gene95469:intron | 25.0% |
| ! | ATAGAGAAAGAATGACAATT+AGG | - | chr1.3:52555800-52555819 | None:intergenic | 25.0% |
| ! | ATTAAAACCAAATGGAAACA+TGG | - | chr1.3:52554651-52554670 | None:intergenic | 25.0% |
| ! | ATTCAGATCTGTTTATCATT+TGG | + | chr1.3:52552058-52552077 | MS.gene95469:intron | 25.0% |
| ! | CCATAACATTTACAAATGAT+CGG | - | chr1.3:52553939-52553958 | None:intergenic | 25.0% |
| ! | CTAAAATAGTTAGAGGAATA+GGG | + | chr1.3:52554049-52554068 | MS.gene95469:intron | 25.0% |
| ! | GAGTATACTAAAATAGTTAG+AGG | + | chr1.3:52554042-52554061 | MS.gene95469:intron | 25.0% |
| ! | GTATAACCAAAAACTACATA+GGG | + | chr1.3:52555137-52555156 | MS.gene95469:intron | 25.0% |
| ! | TGTATAACCAAAAACTACAT+AGG | + | chr1.3:52555136-52555155 | MS.gene95469:intron | 25.0% |
| ! | TTAAATGAAACTGAATTGCA+TGG | + | chr1.3:52554571-52554590 | MS.gene95469:CDS | 25.0% |
| ! | TTAATATTTCTTCACAATCC+AGG | + | chr1.3:52555831-52555850 | MS.gene95469:intron | 25.0% |
| !! | AAATAATTTTTCCATGCAGA+AGG | + | chr1.3:52555935-52555954 | MS.gene95469:intron | 25.0% |
| !! | AATAATTTTTCCATGCAGAA+GGG | + | chr1.3:52555936-52555955 | MS.gene95469:intron | 25.0% |
| !! | ATGTTCTAAATTCTAATAGG+GGG | - | chr1.3:52552747-52552766 | None:intergenic | 25.0% |
| !! | ATTAAGTCAGATATGTTTTC+AGG | - | chr1.3:52553831-52553850 | None:intergenic | 25.0% |
| !! | TTATCATTTGGCTCAATTAT+TGG | + | chr1.3:52552070-52552089 | MS.gene95469:intron | 25.0% |
| !! | TTGCTTACAGTTTGAATTTT+AGG | + | chr1.3:52552407-52552426 | MS.gene95469:intron | 25.0% |
| !!! | CCAAATTTTTTAAAATACCC+AGG | + | chr1.3:52553867-52553886 | MS.gene95469:intron | 25.0% |
| !!! | CCTGGGTATTTTAAAAAATT+TGG | - | chr1.3:52553870-52553889 | None:intergenic | 25.0% |
| !!! | GCTCTTATTGTTAGTTTTAA+TGG | - | chr1.3:52553774-52553793 | None:intergenic | 25.0% |
| !!! | TGGTTTCTAAAATATGAATC+AGG | + | chr1.3:52554393-52554412 | MS.gene95469:intron | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | - | chr1.3:52553504-52553523 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTTAATAACTAGT+AGG | + | chr1.3:52553614-52553633 | MS.gene95469:intron | 25.0% |
| !!! | TTTTTATTTTAGATCCTGCT+GGG | + | chr1.3:52552112-52552131 | MS.gene95469:intron | 25.0% |
| !!! | TTTTTTATTTTAGATCCTGC+TGG | + | chr1.3:52552111-52552130 | MS.gene95469:intron | 25.0% |
| AAAACTAAAACTGCCTATTG+GGG | - | chr1.3:52552774-52552793 | None:intergenic | 30.0% | |
| AAATTTGGATGATATGGATC+TGG | - | chr1.3:52553855-52553874 | None:intergenic | 30.0% | |
| ACAAAAGCAACAATGAATTC+TGG | - | chr1.3:52554852-52554871 | None:intergenic | 30.0% | |
| AGAGAATGAACGAACAATAA+AGG | - | chr1.3:52555620-52555639 | None:intergenic | 30.0% | |
| AGATGCCAAAATTTACACAT+TGG | - | chr1.3:52554888-52554907 | None:intergenic | 30.0% | |
| AGGAAAACAAACTAATGCTA+GGG | - | chr1.3:52553186-52553205 | None:intergenic | 30.0% | |
| ATAAAAATACCTTCAGCTGT+CGG | - | chr1.3:52554597-52554616 | None:intergenic | 30.0% | |
| ATATAACCCAAATTGGACTT+CGG | + | chr1.3:52553733-52553752 | MS.gene95469:intron | 30.0% | |
| ATATGGCCTATCTGTATTTA+TGG | + | chr1.3:52554119-52554138 | MS.gene95469:intron | 30.0% | |
| CAAAACTAAAACTGCCTATT+GGG | - | chr1.3:52552775-52552794 | None:intergenic | 30.0% | |
| CAAAAGCAACAATGAATTCT+GGG | - | chr1.3:52554851-52554870 | None:intergenic | 30.0% | |
| CACATAGATATAACCCAAAT+TGG | + | chr1.3:52553726-52553745 | MS.gene95469:intron | 30.0% | |
| CCAATTCCAAACAACTTTAT+AGG | - | chr1.3:52552872-52552891 | None:intergenic | 30.0% | |
| CCGATCATTTGTAAATGTTA+TGG | + | chr1.3:52553936-52553955 | MS.gene95469:intron | 30.0% | |
| GGAAACTAAAACACCTTTAA+AGG | - | chr1.3:52553165-52553184 | None:intergenic | 30.0% | |
| GGTAATTTAGAAATTGAGCA+TGG | + | chr1.3:52553090-52553109 | MS.gene95469:intron | 30.0% | |
| GGTATACACTACAGTTAAAA+TGG | + | chr1.3:52555230-52555249 | MS.gene95469:intron | 30.0% | |
| GTTGTTAAATAGCAGTATAG+CGG | + | chr1.3:52553258-52553277 | MS.gene95469:intron | 30.0% | |
| TAAGCACCTATAAAGTTGTT+TGG | + | chr1.3:52552863-52552882 | MS.gene95469:intron | 30.0% | |
| TAATGTTTGGATTATTGGGA+TGG | + | chr1.3:52552439-52552458 | MS.gene95469:intron | 30.0% | |
| TACACTACAGTTAAAATGGA+TGG | + | chr1.3:52555234-52555253 | MS.gene95469:intron | 30.0% | |
| TATGGTAAACTTCTCATAAC+TGG | + | chr1.3:52553954-52553973 | MS.gene95469:intron | 30.0% | |
| TATTACCACGTTTAATGATG+TGG | - | chr1.3:52555677-52555696 | None:intergenic | 30.0% | |
| TCAAAACTAAAACTGCCTAT+TGG | - | chr1.3:52552776-52552795 | None:intergenic | 30.0% | |
| TCTACATAAGCAAATCCTTT+CGG | - | chr1.3:52554514-52554533 | None:intergenic | 30.0% | |
| TCTGATATCATGTCCTTTAA+AGG | + | chr1.3:52553149-52553168 | MS.gene95469:intron | 30.0% | |
| TGAAAACTAAAACTGCTTGT+CGG | - | chr1.3:52552598-52552617 | None:intergenic | 30.0% | |
| TGTTAAAAATTGACTGTGAC+TGG | + | chr1.3:52555751-52555770 | MS.gene95469:intron | 30.0% | |
| TTAGATCTATCTAGATGGTT+TGG | - | chr1.3:52554095-52554114 | None:intergenic | 30.0% | |
| ! | ACTCAATTCTGCAATCTTTT+TGG | + | chr1.3:52552355-52552374 | MS.gene95469:intron | 30.0% |
| ! | AGCTTTATATAACTAGCCAT+AGG | - | chr1.3:52552844-52552863 | None:intergenic | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | + | chr1.3:52553599-52553618 | MS.gene95469:intron | 30.0% |
| ! | CCTATAAAGTTGTTTGGAAT+TGG | + | chr1.3:52552869-52552888 | MS.gene95469:intron | 30.0% |
| ! | GACATCCAATGTGTAAATTT+TGG | + | chr1.3:52554880-52554899 | MS.gene95469:intron | 30.0% |
| ! | GACTTTTCAGAAACATGTTA+AGG | - | chr1.3:52552550-52552569 | None:intergenic | 30.0% |
| ! | TGAATTATGGTTTTTCCTTC+AGG | + | chr1.3:52554671-52554690 | MS.gene95469:intron | 30.0% |
| ! | TGTTCTAAATTCTAATAGGG+GGG | - | chr1.3:52552746-52552765 | None:intergenic | 30.0% |
| !! | TTAACATGAATCGATTTTGC+AGG | + | chr1.3:52551861-52551880 | MS.gene95469:intron | 30.0% |
| !!! | TATTTTTAGAGTGTGTGGAA+TGG | + | chr1.3:52552924-52552943 | MS.gene95469:intron | 30.0% |
| AAAACTAAAACTGCTTGTCG+GGG | - | chr1.3:52552596-52552615 | None:intergenic | 35.0% | |
| AAGTTACAAACACTCATGAC+AGG | + | chr1.3:52555473-52555492 | MS.gene95469:intron | 35.0% | |
| AATCACTCCATGTTTCCATT+TGG | + | chr1.3:52554641-52554660 | MS.gene95469:intron | 35.0% | |
| AATTGGAGGATATGAAGAAG+AGG | + | chr1.3:52551884-52551903 | MS.gene95469:CDS | 35.0% | |
| AGATTGTAGTCCATGCATTT+AGG | + | chr1.3:52555327-52555346 | MS.gene95469:intron | 35.0% | |
| ATAAGAGCTACTAGACCATT+TGG | + | chr1.3:52553786-52553805 | MS.gene95469:intron | 35.0% | |
| ATAGATGCTGAACATCAAGA+AGG | + | chr1.3:52551748-52551767 | MS.gene95469:CDS | 35.0% | |
| ATTGAAACCGAAGTCCAATT+TGG | - | chr1.3:52553743-52553762 | None:intergenic | 35.0% | |
| ATTGATTGAACCAAAAACCC+TGG | + | chr1.3:52552807-52552826 | MS.gene95469:intron | 35.0% | |
| ATTGGACTTCGGTTTCAATT+TGG | + | chr1.3:52553744-52553763 | MS.gene95469:intron | 35.0% | |
| CAAAGATGCACCTAAAAACT+CGG | - | chr1.3:52552387-52552406 | None:intergenic | 35.0% | |
| CATGGACCATAAATACAGAT+AGG | - | chr1.3:52554128-52554147 | None:intergenic | 35.0% | |
| CATTCAGGTAATCAACCAAA+TGG | - | chr1.3:52553804-52553823 | None:intergenic | 35.0% | |
| CTACAGTTAAAATGGATGGA+TGG | + | chr1.3:52555238-52555257 | MS.gene95469:intron | 35.0% | |
| CTATCTGTATTTATGGTCCA+TGG | + | chr1.3:52554126-52554145 | MS.gene95469:intron | 35.0% | |
| GAAAACTAAAACTGCTTGTC+GGG | - | chr1.3:52552597-52552616 | None:intergenic | 35.0% | |
| GAGAAAGAATGACAATTAGG+AGG | - | chr1.3:52555797-52555816 | None:intergenic | 35.0% | |
| GAGGAAAACAAACTAATGCT+AGG | - | chr1.3:52553187-52553206 | None:intergenic | 35.0% | |
| GATTGTAGTCCATGCATTTA+GGG | + | chr1.3:52555328-52555347 | MS.gene95469:intron | 35.0% | |
| TAGAACGTTTAGGTGTATGA+TGG | + | chr1.3:52552307-52552326 | MS.gene95469:intron | 35.0% | |
| TGGTTTCTTACAAGTTACCT+GGG | - | chr1.3:52553887-52553906 | None:intergenic | 35.0% | |
| TTACAGATCGCAGAATATAG+CGG | - | chr1.3:52553412-52553431 | None:intergenic | 35.0% | |
| TTAGAAACAACTTGTACGGA+CGG | + | chr1.3:52555536-52555555 | MS.gene95469:intron | 35.0% | |
| TTCTGTATCTCAAGCTGAAA+AGG | + | chr1.3:52552137-52552156 | MS.gene95469:CDS | 35.0% | |
| TTCTTTCCACCATATGCTTA+CGG | + | chr1.3:52554786-52554805 | MS.gene95469:CDS | 35.0% | |
| TTGAAACCGAAGTCCAATTT+GGG | - | chr1.3:52553742-52553761 | None:intergenic | 35.0% | |
| TTGATGTTCAGCATCTATGT+CGG | - | chr1.3:52551746-52551765 | None:intergenic | 35.0% | |
| TTGGTTTCTTACAAGTTACC+TGG | - | chr1.3:52553888-52553907 | None:intergenic | 35.0% | |
| TTTGGATTATTGGGATGGAT+GGG | + | chr1.3:52552444-52552463 | MS.gene95469:intron | 35.0% | |
| ! | AAAAGTGAAACAGGCTGTTT+TGG | - | chr1.3:52552895-52552914 | None:intergenic | 35.0% |
| ! | AACTTGCACCTTAGTGTTTT+AGG | + | chr1.3:52553648-52553667 | MS.gene95469:intron | 35.0% |
| ! | ACGAACAATAAAGGTATGCT+TGG | - | chr1.3:52555611-52555630 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr1.3:52553469-52553488 | None:intergenic | 35.0% |
| ! | AGGAAAGTATACAGAACATG+AGG | - | chr1.3:52555060-52555079 | None:intergenic | 35.0% |
| ! | ATGCATCCCTATGTAGTTTT+TGG | - | chr1.3:52555146-52555165 | None:intergenic | 35.0% |
| ! | CAATTCTGCAATCTTTTTGG+CGG | + | chr1.3:52552358-52552377 | MS.gene95469:intron | 35.0% |
| ! | GGAGTGTTAATTCATCAAAC+TGG | + | chr1.3:52554373-52554392 | MS.gene95469:intron | 35.0% |
| ! | GTTTGGCCTAAAGTTTTCTT+TGG | - | chr1.3:52554078-52554097 | None:intergenic | 35.0% |
| ! | TAAGCATATGGTGGAAAGAA+TGG | - | chr1.3:52554786-52554805 | None:intergenic | 35.0% |
| ! | TGTGTGTTCAAGATTGATTC+TGG | + | chr1.3:52554267-52554286 | MS.gene95469:intron | 35.0% |
| !! | AGTTTGTTTTCCTCTTGGAA+GGG | + | chr1.3:52553193-52553212 | MS.gene95469:intron | 35.0% |
| !! | ATGTTTTCAGGATCACATTC+AGG | - | chr1.3:52553819-52553838 | None:intergenic | 35.0% |
| !! | GATCGTTGTTTTCAACTACT+TGG | - | chr1.3:52552699-52552718 | None:intergenic | 35.0% |
| !! | TGAATCGATTTTGCAGGAAT+TGG | + | chr1.3:52551867-52551886 | MS.gene95469:intron | 35.0% |
| !! | TTTCAACTACTTGGTGCATA+TGG | - | chr1.3:52552690-52552709 | None:intergenic | 35.0% |
| !!! | ATTGAGCATGGTTTTGTCAA+AGG | + | chr1.3:52553102-52553121 | MS.gene95469:intron | 35.0% |
| !!! | GCATTAGTTTGTTTTCCTCT+TGG | + | chr1.3:52553188-52553207 | MS.gene95469:intron | 35.0% |
| !!! | TAGTTTGTTTTCCTCTTGGA+AGG | + | chr1.3:52553192-52553211 | MS.gene95469:intron | 35.0% |
| AAATGCTGTTGGACTTCTTC+AGG | - | chr1.3:52554436-52554455 | None:intergenic | 40.0% | |
| AAGCATTACCATGCAGTACA+GGG | - | chr1.3:52554001-52554020 | None:intergenic | 40.0% | |
| AGCTAAGGTTGAGAAAGAGA+TGG | + | chr1.3:52551951-52551970 | MS.gene95469:CDS | 40.0% | |
| AGGGTTAACGAATTAGGGTT+TGG | + | chr1.3:52551814-52551833 | MS.gene95469:intron | 40.0% | |
| AGGGTTAGGGTTAACGAATT+AGG | + | chr1.3:52551808-52551827 | MS.gene95469:intron | 40.0% | |
| AGTGCTCAAGTAGAACGTTT+AGG | + | chr1.3:52552297-52552316 | MS.gene95469:intron | 40.0% | |
| ATAGCTTACCCGTAAGCATA+TGG | - | chr1.3:52554798-52554817 | None:intergenic | 40.0% | |
| CAGCAACAACACTAACTGAA+TGG | + | chr1.3:52555209-52555228 | MS.gene95469:intron | 40.0% | |
| CATTAACAAGCACGCTTATG+TGG | - | chr1.3:52555030-52555049 | None:intergenic | 40.0% | |
| CATTGCCACATCATTAAACG+TGG | + | chr1.3:52555669-52555688 | MS.gene95469:intron | 40.0% | |
| GACAAATTTGGTCAACCGAA+AGG | + | chr1.3:52554496-52554515 | MS.gene95469:CDS | 40.0% | |
| GCAAAACGTACAAATGTTCC+TGG | + | chr1.3:52554699-52554718 | MS.gene95469:CDS | 40.0% | |
| GCTAAGGTTGAGAAAGAGAT+GGG | + | chr1.3:52551952-52551971 | MS.gene95469:CDS | 40.0% | |
| GCTATATCACTATCGCATAG+CGG | + | chr1.3:52553282-52553301 | MS.gene95469:intron | 40.0% | |
| GGGAGACCAAAGAAAACTTT+AGG | + | chr1.3:52554069-52554088 | MS.gene95469:intron | 40.0% | |
| GGGTTAACGAATTAGGGTTT+GGG | + | chr1.3:52551815-52551834 | MS.gene95469:intron | 40.0% | |
| GGGTTAGGGTTAACGAATTA+GGG | + | chr1.3:52551809-52551828 | MS.gene95469:intron | 40.0% | |
| GTTTGGATTATTGGGATGGA+TGG | + | chr1.3:52552443-52552462 | MS.gene95469:intron | 40.0% | |
| TCTTTCCACCATATGCTTAC+GGG | + | chr1.3:52554787-52554806 | MS.gene95469:CDS | 40.0% | |
| TGTATCTCAAGCTGAAAAGG+AGG | + | chr1.3:52552140-52552159 | MS.gene95469:CDS | 40.0% | |
| TTAGAACATTTGGCCCCAAT+AGG | + | chr1.3:52552758-52552777 | MS.gene95469:intron | 40.0% | |
| TTATGGTCCATGGCAGAATA+TGG | + | chr1.3:52554136-52554155 | MS.gene95469:intron | 40.0% | |
| TTGAACCAAAAACCCTGGTA+TGG | + | chr1.3:52552812-52552831 | MS.gene95469:intron | 40.0% | |
| TTGGAAGGGACATGTTATCA+GGG | + | chr1.3:52553207-52553226 | MS.gene95469:intron | 40.0% | |
| ! | AAAGCATTACCATGCAGTAC+AGG | - | chr1.3:52554002-52554021 | None:intergenic | 40.0% |
| ! | ACTGGATCAACAGTAGGTTT+TGG | + | chr1.3:52555769-52555788 | MS.gene95469:intron | 40.0% |
| ! | CCTTGCAAGTGTACTTTTGT+GGG | + | chr1.3:52555077-52555096 | MS.gene95469:intron | 40.0% |
| ! | TCCTTGCAAGTGTACTTTTG+TGG | + | chr1.3:52555076-52555095 | MS.gene95469:intron | 40.0% |
| ! | TGTCGTTTGATCCATGTAGT+CGG | + | chr1.3:52554159-52554178 | MS.gene95469:intron | 40.0% |
| !! | ATCGATTTTGCAGGAATTGG+AGG | + | chr1.3:52551870-52551889 | MS.gene95469:intron | 40.0% |
| !! | GGGCTGAATGTTCTAGAAAA+GGG | - | chr1.3:52552576-52552595 | None:intergenic | 40.0% |
| !! | TACCAAAGCTTTTTCCCACA+AGG | - | chr1.3:52554190-52554209 | None:intergenic | 40.0% |
| !! | TGCACCTTAGTGTTTTAGGT+GGG | + | chr1.3:52553652-52553671 | MS.gene95469:intron | 40.0% |
| !! | TTGCACCTTAGTGTTTTAGG+TGG | + | chr1.3:52553651-52553670 | MS.gene95469:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr1.3:52553465-52553484 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr1.3:52553466-52553485 | None:intergenic | 40.0% |
| AACGACACCATATTCTGCCA+TGG | - | chr1.3:52554146-52554165 | None:intergenic | 45.0% | |
| AAGAATGGTGCAGGCATGAA+AGG | - | chr1.3:52554771-52554790 | None:intergenic | 45.0% | |
| ACCAAAAACCCTGGTATGGT+AGG | + | chr1.3:52552816-52552835 | MS.gene95469:intron | 45.0% | |
| ACTGTGACTGGATCAACAGT+AGG | + | chr1.3:52555763-52555782 | MS.gene95469:intron | 45.0% | |
| AGTGTGTGGAATGGTTGAGA+TGG | + | chr1.3:52552933-52552952 | MS.gene95469:intron | 45.0% | |
| ATCTTGTGTGCCTGCTATCA+TGG | + | chr1.3:52555303-52555322 | MS.gene95469:intron | 45.0% | |
| CAATCACACCACCAAGGTTA+GGG | + | chr1.3:52551789-52551808 | MS.gene95469:intron | 45.0% | |
| CACAGGACTGAAAATGCTGT+TGG | - | chr1.3:52554447-52554466 | None:intergenic | 45.0% | |
| CACCTTGTGGGAAAAAGCTT+TGG | + | chr1.3:52554185-52554204 | MS.gene95469:intron | 45.0% | |
| CATAGGTACCTACCATACCA+GGG | - | chr1.3:52552827-52552846 | None:intergenic | 45.0% | |
| CCAAAACCACCCTAAATGCA+TGG | - | chr1.3:52555340-52555359 | None:intergenic | 45.0% | |
| CTACAATCTGCCATGATAGC+AGG | - | chr1.3:52555316-52555335 | None:intergenic | 45.0% | |
| CTGCACGTGATTGACCAATA+CGG | + | chr1.3:52552663-52552682 | MS.gene95469:intron | 45.0% | |
| CTTGGAAGGGACATGTTATC+AGG | + | chr1.3:52553206-52553225 | MS.gene95469:intron | 45.0% | |
| GAATGGTTGAGATGGGAAAG+AGG | + | chr1.3:52552941-52552960 | MS.gene95469:intron | 45.0% | |
| GAGATGGGAAAGAGGTTGTA+TGG | + | chr1.3:52552949-52552968 | MS.gene95469:intron | 45.0% | |
| GATAACATGTCCCTTCCAAG+AGG | - | chr1.3:52553206-52553225 | None:intergenic | 45.0% | |
| GATGCTCGATCGATCTATGT+TGG | + | chr1.3:52552168-52552187 | MS.gene95469:CDS | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr1.3:52553459-52553478 | MS.gene95469:intron | 45.0% | |
| GCTGTGCTATAGCATTGTTG+CGG | + | chr1.3:52553374-52553393 | MS.gene95469:intron | 45.0% | |
| GGTGGGTGCAAGTTAACAAA+TGG | - | chr1.3:52553448-52553467 | None:intergenic | 45.0% | |
| GTACATGTAGCCAGTTGGTT+TGG | + | chr1.3:52553052-52553071 | MS.gene95469:intron | 45.0% | |
| GTGTGTGGAATGGTTGAGAT+GGG | + | chr1.3:52552934-52552953 | MS.gene95469:intron | 45.0% | |
| GTGTTGTACATGTAGCCAGT+TGG | + | chr1.3:52553047-52553066 | MS.gene95469:intron | 45.0% | |
| GTTAACCCTAACCCTAACCT+TGG | - | chr1.3:52551803-52551822 | None:intergenic | 45.0% | |
| GTTCCTGGATTGAAGCAGTA+CGG | + | chr1.3:52554714-52554733 | MS.gene95469:CDS | 45.0% | |
| TCAAGCTGAAAAGGAGGAAG+TGG | + | chr1.3:52552146-52552165 | MS.gene95469:CDS | 45.0% | |
| TCTTCGCGAAATGCAAGCTA+AGG | + | chr1.3:52551936-52551955 | MS.gene95469:CDS | 45.0% | |
| TGCACCCACCTAAAACACTA+AGG | - | chr1.3:52553659-52553678 | None:intergenic | 45.0% | |
| TGCACGTGATTGACCAATAC+GGG | + | chr1.3:52552664-52552683 | MS.gene95469:intron | 45.0% | |
| TGTAGTCCATGCATTTAGGG+TGG | + | chr1.3:52555331-52555350 | MS.gene95469:intron | 45.0% | |
| ! | ACCTACCATACCAGGGTTTT+TGG | - | chr1.3:52552820-52552839 | None:intergenic | 45.0% |
| ! | CAACAGCATTTTCAGTCCTG+TGG | + | chr1.3:52554445-52554464 | MS.gene95469:CDS | 45.0% |
| ! | CAAGTGTACTTTTGTGGGCA+GGG | + | chr1.3:52555082-52555101 | MS.gene95469:intron | 45.0% |
| ! | CCCACAAAAGTACACTTGCA+AGG | - | chr1.3:52555080-52555099 | None:intergenic | 45.0% |
| ! | TACGTTTTGCAGACACCTGA+AGG | - | chr1.3:52554689-52554708 | None:intergenic | 45.0% |
| ! | TATGGTGGAAAGAATGGTGC+AGG | - | chr1.3:52554780-52554799 | None:intergenic | 45.0% |
| ! | TCAGTTAGTGTTGTTGCTGC+AGG | - | chr1.3:52555208-52555227 | None:intergenic | 45.0% |
| ! | TTGGCGGTTTCCGAGTTTTT+AGG | + | chr1.3:52552374-52552393 | MS.gene95469:intron | 45.0% |
| !! | CAAAGCTTTTTCCCACAAGG+TGG | - | chr1.3:52554187-52554206 | None:intergenic | 45.0% |
| !! | CCATGCATTTAGGGTGGTTT+TGG | + | chr1.3:52555337-52555356 | MS.gene95469:intron | 45.0% |
| !! | GGGGCTGAATGTTCTAGAAA+AGG | - | chr1.3:52552577-52552596 | None:intergenic | 45.0% |
| !! | TGTAGCCAGTTGGTTTGGTT+TGG | + | chr1.3:52553057-52553076 | MS.gene95469:intron | 45.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | + | chr1.3:52553539-52553558 | MS.gene95469:intron | 5.0% |
| AACCCTAACCCTAACCTTGG+TGG | - | chr1.3:52551800-52551819 | None:intergenic | 50.0% | |
| ACAAGGTGGAACCGACTACA+TGG | - | chr1.3:52554173-52554192 | None:intergenic | 50.0% | |
| ACACCACCAAGGTTAGGGTT+AGG | + | chr1.3:52551794-52551813 | MS.gene95469:intron | 50.0% | |
| ATAGAAGACCCACCCGATAC+AGG | + | chr1.3:52555968-52555987 | MS.gene95469:CDS | 50.0% | |
| ATGCAGTACAGGGCTGATGA+AGG | - | chr1.3:52553991-52554010 | None:intergenic | 50.0% | |
| CACCACCAAGGTTAGGGTTA+GGG | + | chr1.3:52551795-52551814 | MS.gene95469:intron | 50.0% | |
| CCAATCACACCACCAAGGTT+AGG | + | chr1.3:52551788-52551807 | MS.gene95469:intron | 50.0% | |
| CCATAGGTACCTACCATACC+AGG | - | chr1.3:52552828-52552847 | None:intergenic | 50.0% | |
| CCTGGTATGGTAGGTACCTA+TGG | + | chr1.3:52552825-52552844 | MS.gene95469:intron | 50.0% | |
| CGGGTGGGTCTTCTATATCT+CGG | - | chr1.3:52555964-52555983 | None:intergenic | 50.0% | |
| CTTCCGTACTGCTTCAATCC+AGG | - | chr1.3:52554720-52554739 | None:intergenic | 50.0% | |
| GAAGAGGCTGAAAGAGATCG+AGG | + | chr1.3:52551900-52551919 | MS.gene95469:CDS | 50.0% | |
| GACTCTGTTCACAGTACCAC+AGG | - | chr1.3:52554464-52554483 | None:intergenic | 50.0% | |
| GCTTACCCGTAAGCATATGG+TGG | - | chr1.3:52554795-52554814 | None:intergenic | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+GGG | - | chr1.3:52553709-52553728 | None:intergenic | 50.0% | |
| TAGTATGGCCTGTATCGGGT+GGG | - | chr1.3:52555979-52555998 | None:intergenic | 50.0% | |
| TATCTCGGAACCCTTCTGCA+TGG | - | chr1.3:52555949-52555968 | None:intergenic | 50.0% | |
| TCGCTCCAAACCAAACCAAC+TGG | - | chr1.3:52553065-52553084 | None:intergenic | 50.0% | |
| TGAGATACAGAAGACCCAGC+AGG | - | chr1.3:52552129-52552148 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+GGG | - | chr1.3:52553708-52553727 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | - | chr1.3:52553708-52553727 | None:intergenic | 50.0% | |
| TTCATCAGCCCTGTACTGCA+TGG | + | chr1.3:52553990-52554009 | MS.gene95469:intron | 50.0% | |
| TTGGTGCATATGGCCCGTAT+TGG | - | chr1.3:52552680-52552699 | None:intergenic | 50.0% | |
| ! | AAAGAGATGGGCGCTGTTCA+AGG | + | chr1.3:52551964-52551983 | MS.gene95469:CDS | 50.0% |
| ! | ATGTAGTCGGTTCCACCTTG+TGG | + | chr1.3:52554172-52554191 | MS.gene95469:intron | 50.0% |
| ! | GCAAGTGTACTTTTGTGGGC+AGG | + | chr1.3:52555081-52555100 | MS.gene95469:intron | 50.0% |
| ! | TGTAGTCGGTTCCACCTTGT+GGG | + | chr1.3:52554173-52554192 | MS.gene95469:intron | 50.0% |
| !! | CCTAACCTTGGTGGTGTGAT+TGG | - | chr1.3:52551791-52551810 | None:intergenic | 50.0% |
| !! | GTTTGGTTTGGAGCGAGTCT+GGG | + | chr1.3:52553069-52553088 | MS.gene95469:intron | 50.0% |
| ATTGCATGGCCGACAGCTGA+AGG | + | chr1.3:52554585-52554604 | MS.gene95469:CDS | 55.0% | |
| CAGTACGGAAGAAGACCTGC+TGG | + | chr1.3:52554729-52554748 | MS.gene95469:CDS | 55.0% | |
| CGCATCCAATCACACCACCA+AGG | + | chr1.3:52551783-52551802 | MS.gene95469:CDS | 55.0% | |
| CTAGTATGGCCTGTATCGGG+TGG | - | chr1.3:52555980-52555999 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTGTGG+GGG | - | chr1.3:52553707-52553726 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGTGTGGG+GGG | - | chr1.3:52553706-52553725 | None:intergenic | 55.0% | |
| !! | AGAAGACCTGCTGGTTTCCG+CGG | + | chr1.3:52554738-52554757 | MS.gene95469:CDS | 55.0% |
| !! | GGTTTGGTTTGGAGCGAGTC+TGG | + | chr1.3:52553068-52553087 | MS.gene95469:intron | 55.0% |
| GCATGAAAGGCCTCCTACCG+CGG | - | chr1.3:52554758-52554777 | None:intergenic | 60.0% | |
| GTGTGTGTGTGTGTGTGGGG+GGG | - | chr1.3:52553705-52553724 | None:intergenic | 60.0% | |
| TGTGTGTGTGTGTGTGGGGG+GGG | - | chr1.3:52553704-52553723 | None:intergenic | 60.0% | |
| CTCCTACCGCGGAAACCAGC+AGG | - | chr1.3:52554747-52554766 | None:intergenic | 65.0% | |
| GTGTGTGTGTGTGTGGGGGG+GGG | - | chr1.3:52553703-52553722 | None:intergenic | 65.0% | |
| TGTGTGTGTGTGTGGGGGGG+GGG | - | chr1.3:52553702-52553721 | None:intergenic | 65.0% | |
| !! | CTGCTGGTTTCCGCGGTAGG+AGG | + | chr1.3:52554745-52554764 | MS.gene95469:CDS | 65.0% |
| !! | GACCTGCTGGTTTCCGCGGT+AGG | + | chr1.3:52554742-52554761 | MS.gene95469:CDS | 65.0% |
| GTGTGTGTGTGTGGGGGGGG+GGG | - | chr1.3:52553701-52553720 | None:intergenic | 70.0% | |
| TGTGTGTGTGTGGGGGGGGG+GGG | - | chr1.3:52553700-52553719 | None:intergenic | 70.0% | |
| GTGTGTGTGTGGGGGGGGGG+GGG | - | chr1.3:52553699-52553718 | None:intergenic | 75.0% | |
| TGTGTGTGTGGGGGGGGGGG+GGG | - | chr1.3:52553698-52553717 | None:intergenic | 75.0% | |
| ! | GTGTGTGTGGGGGGGGGGGG+GGG | - | chr1.3:52553697-52553716 | None:intergenic | 80.0% |
| ! | TGTGTGTGGGGGGGGGGGGG+GGG | - | chr1.3:52553696-52553715 | None:intergenic | 80.0% |
| ! | GTGTGTGGGGGGGGGGGGGG+GGG | - | chr1.3:52553695-52553714 | None:intergenic | 85.0% |
| ! | TGTGTGGGGGGGGGGGGGGG+GGG | - | chr1.3:52553694-52553713 | None:intergenic | 85.0% |
| ! | GTGTGGGGGGGGGGGGGGGG+GGG | - | chr1.3:52553693-52553712 | None:intergenic | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | - | chr1.3:52553692-52553711 | None:intergenic | 90.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr1.3:52553691-52553710 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52551736 | 52555999 | 52551736 | ID=MS.gene95469 |
| chr1.3 | mRNA | 52551736 | 52555999 | 52551736 | ID=MS.gene95469.t1;Parent=MS.gene95469 |
| chr1.3 | exon | 52551736 | 52551804 | 52551736 | ID=MS.gene95469.t1.exon1;Parent=MS.gene95469.t1 |
| chr1.3 | CDS | 52551736 | 52551804 | 52551736 | ID=cds.MS.gene95469.t1;Parent=MS.gene95469.t1 |
| chr1.3 | exon | 52551883 | 52551985 | 52551883 | ID=MS.gene95469.t1.exon2;Parent=MS.gene95469.t1 |
| chr1.3 | CDS | 52551883 | 52551985 | 52551883 | ID=cds.MS.gene95469.t1;Parent=MS.gene95469.t1 |
| chr1.3 | exon | 52552124 | 52552194 | 52552124 | ID=MS.gene95469.t1.exon3;Parent=MS.gene95469.t1 |
| chr1.3 | CDS | 52552124 | 52552194 | 52552124 | ID=cds.MS.gene95469.t1;Parent=MS.gene95469.t1 |
| chr1.3 | exon | 52554415 | 52554606 | 52554415 | ID=MS.gene95469.t1.exon4;Parent=MS.gene95469.t1 |
| chr1.3 | CDS | 52554415 | 52554606 | 52554415 | ID=cds.MS.gene95469.t1;Parent=MS.gene95469.t1 |
| chr1.3 | exon | 52554693 | 52554808 | 52554693 | ID=MS.gene95469.t1.exon5;Parent=MS.gene95469.t1 |
| chr1.3 | CDS | 52554693 | 52554808 | 52554693 | ID=cds.MS.gene95469.t1;Parent=MS.gene95469.t1 |
| chr1.3 | exon | 52555954 | 52555999 | 52555954 | ID=MS.gene95469.t1.exon6;Parent=MS.gene95469.t1 |
| chr1.3 | CDS | 52555954 | 52555999 | 52555954 | ID=cds.MS.gene95469.t1;Parent=MS.gene95469.t1 |
| Gene Sequence |
| Protein sequence |
