AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005879.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005879.01.T01 MTR_1g108710 94.624 93 5 0 44 136 192 284 1.74e-61 191
MsG0180005879.01.T01 MTR_1g108710 96.386 83 3 0 44 126 169 251 2.04e-54 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005879.01.T01 AT1G15140 75.904 83 20 0 44 126 193 275 1.65e-43 145
MsG0180005879.01.T01 AT1G15140 76.786 56 13 0 44 99 193 248 1.58e-27 103
MsG0180005879.01.T01 AT1G15140 76.786 56 13 0 44 99 193 248 1.58e-27 103

Find 105 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCATTCTCTTCAGGTTTC+TGG 0.108389 1:+97095948 None:intergenic
TTCTGACCAAAATGGAATTT+TGG 0.144657 1:-97094498 MsG0180005879.01.T01:three_prime_UTR
GAATGTAAAATAAACAATTT+TGG 0.174190 1:-97094418 MsG0180005879.01.T01:three_prime_UTR
TGACAACAATGTCATCATTT+TGG 0.210332 1:+97095042 None:intergenic
TATTTGAAGTCTACCTAATT+AGG 0.232682 1:+97095387 None:intergenic
ACTCTTGCACTTACTTTCTT+TGG 0.233808 1:+97096902 None:intergenic
CCTGAAGAGAATGGCTTATC+AGG 0.258718 1:-97095941 MsG0180005879.01.T01:intron
ACAATGCCAAAATTCCATTT+TGG 0.260562 1:+97094492 None:intergenic
CCAAGATACTCATACCATTA+TGG 0.266005 1:+97098286 None:intergenic
TTGGACTAGCGAGGCCGTTT+TGG 0.270676 1:-97095003 MsG0180005879.01.T01:three_prime_UTR
GGATAAAACCTTGTTAGTTT+TGG 0.276662 1:+97095102 None:intergenic
TGCCAGTTAAGCTGGCTCTT+GGG 0.294257 1:-97094921 MsG0180005879.01.T01:three_prime_UTR
AATATCAATGTTATTATTGC+AGG 0.296067 1:-97094577 MsG0180005879.01.T01:three_prime_UTR
CCTGATAAGCCATTCTCTTC+AGG 0.302056 1:+97095941 None:intergenic
TCACTCGGGCCTGGTCTAAT+TGG 0.310943 1:-97095022 MsG0180005879.01.T01:three_prime_UTR
TAAAGAACTTCTGACCAAAA+TGG 0.311227 1:-97094506 MsG0180005879.01.T01:three_prime_UTR
GAAAGATGATAGCAATAATA+AGG 0.327903 1:+97095572 None:intergenic
TCTTTCTTTCACTCTATGAT+AGG 0.345032 1:+97095499 None:intergenic
AATATATTGACACAAACTTA+TGG 0.348143 1:-97094242 MsG0180005879.01.T01:three_prime_UTR
TTGCCAGTTAAGCTGGCTCT+TGG 0.365336 1:-97094922 MsG0180005879.01.T01:three_prime_UTR
TGTCATGATATTCTCCCAAT+TGG 0.373214 1:+97094845 None:intergenic
TTATCCAACCCTTTGTCAAC+TGG 0.387952 1:-97095632 MsG0180005879.01.T01:CDS
TATAGGAGAGATTTAAAGAC+TGG 0.394111 1:-97095840 MsG0180005879.01.T01:intron
AGAATATCATGACAAATATC+AGG 0.400525 1:-97094836 MsG0180005879.01.T01:three_prime_UTR
CTAATACAACGTGTTTAAAC+AGG 0.404090 1:+97094158 None:intergenic
TTAGGTTGTGAATGTGTCAT+TGG 0.407518 1:-97096979 MsG0180005879.01.T01:intron
AAGTCTACCTAATTAGGAAA+TGG 0.411847 1:+97095393 None:intergenic
TCAACTGGTGCTGTACTTTG+TGG 0.414186 1:-97095617 MsG0180005879.01.T01:CDS
TTTAAAGACTGGGAATCTTC+CGG 0.416173 1:-97095829 MsG0180005879.01.T01:CDS
GCCAGTTAAGCTGGCTCTTG+GGG 0.419681 1:-97094920 MsG0180005879.01.T01:three_prime_UTR
ATGTTCCATGGAGGAGTATG+AGG 0.428751 1:-97094975 MsG0180005879.01.T01:three_prime_UTR
TTTAGGAAACCGAACCTACT+AGG 0.432564 1:-97095459 MsG0180005879.01.T01:three_prime_UTR
AATAATGTAGTTGCAGTTGT+TGG 0.438317 1:+97095179 None:intergenic
ACATCTATTCTTGTTGCTGA+TGG 0.438700 1:-97094549 MsG0180005879.01.T01:three_prime_UTR
CAACTGGTGCTGTACTTTGT+GGG 0.442180 1:-97095616 MsG0180005879.01.T01:CDS
TGAGAGATGAAGCAGCTAAC+TGG 0.445123 1:+97094709 None:intergenic
TGAAGCAGCTAACTGGTTCA+TGG 0.446650 1:+97094716 None:intergenic
GTGTCCTGGTTTGTGTCAAC+TGG 0.446888 1:-97094681 MsG0180005879.01.T01:three_prime_UTR
AATATTAGGAAAATGTTAAC+CGG 0.448117 1:-97098335 None:intergenic
CCCTCGACTGTCTATCAGTT+AGG 0.450752 1:+97096949 None:intergenic
ATTCCAGAGCTAGTCCTAGT+AGG 0.460272 1:+97095445 None:intergenic
AGAGCTAGTCCTAGTAGGTT+CGG 0.461303 1:+97095450 None:intergenic
ACTAGTTAAGAAAACCATAA+TGG 0.461473 1:-97098300 MsG0180005879.01.T01:intron
GGATGGATTGCCAGTTAAGC+TGG 0.463707 1:-97094929 MsG0180005879.01.T01:three_prime_UTR
TCTCCAGTCCAACTATCATC+TGG 0.464149 1:+97095778 None:intergenic
ACATTGTTGTCACTCGGGCC+TGG 0.472601 1:-97095031 MsG0180005879.01.T01:three_prime_UTR
ATAGACAGTCGAGGGGAACT+AGG 0.497495 1:-97096941 MsG0180005879.01.T01:CDS
AGTATGAGAGGGTTCCAATT+GGG 0.499947 1:-97094859 MsG0180005879.01.T01:three_prime_UTR
GAACCTACTAGGACTAGCTC+TGG 0.501265 1:-97095448 MsG0180005879.01.T01:three_prime_UTR
CATCTCTCAATACAGTGTCC+TGG 0.503584 1:-97094695 MsG0180005879.01.T01:three_prime_UTR
TGTCTCAACCAGATGATAGT+TGG 0.504609 1:-97095786 MsG0180005879.01.T01:CDS
ATAATGTCTTGGATTTGTAA+AGG 0.509473 1:+97095081 None:intergenic
TGGAGAAAGTGGCTTTGTAC+AGG 0.512190 1:-97095761 MsG0180005879.01.T01:intron
AAGTATGAGAGGGTTCCAAT+TGG 0.513596 1:-97094860 MsG0180005879.01.T01:three_prime_UTR
TAAAATTTAAAACAATCAAA+AGG 0.515316 1:-97095330 MsG0180005879.01.T01:three_prime_UTR
CAACCAGATGATAGTTGGAC+TGG 0.517272 1:-97095781 MsG0180005879.01.T01:CDS
ATTGAGTCAGGATTTGATGC+TGG 0.518551 1:-97096003 MsG0180005879.01.T01:intron
GGTTGTGAATGTGTCATTGG+TGG 0.520858 1:-97096976 MsG0180005879.01.T01:CDS
ATGGAACATCCTTTCCAAAA+CGG 0.525427 1:+97094989 None:intergenic
ATGATGGATCAATAATGTCT+TGG 0.530385 1:+97095070 None:intergenic
TATGAGGGCATCATCATTGA+AGG 0.530892 1:-97094959 MsG0180005879.01.T01:three_prime_UTR
GATAGTTGGACTGGAGAAAG+TGG 0.543932 1:-97095772 MsG0180005879.01.T01:CDS
ATAATAACATTGATATTGAA+AGG 0.546709 1:+97094583 None:intergenic
GTGTCTATGACTGCACACTC+TGG 0.549427 1:-97094317 MsG0180005879.01.T01:three_prime_UTR
GAAGCAGCTAACTGGTTCAT+GGG 0.557219 1:+97094717 None:intergenic
GGCCAGAAACCTGAAGAGAA+TGG 0.557359 1:-97095950 MsG0180005879.01.T01:CDS
CTCGCTAGTCCAATTAGACC+AGG 0.563971 1:+97095013 None:intergenic
CCAGTTAAGCTGGCTCTTGG+GGG 0.569841 1:-97094919 MsG0180005879.01.T01:three_prime_UTR
ATGATGACATTGTTGTCACT+CGG 0.570708 1:-97095037 MsG0180005879.01.T01:three_prime_UTR
GTACAGCACCAGTTGACAAA+GGG 0.571677 1:+97095624 None:intergenic
CTCACTTACTACTTGTACAC+CGG 0.573647 1:-97095136 MsG0180005879.01.T01:three_prime_UTR
TCATCTGGTTGAGACAATAC+AGG 0.579533 1:+97095793 None:intergenic
TCATTGAAGGAGCTAGAGGA+TGG 0.591024 1:-97094946 MsG0180005879.01.T01:three_prime_UTR
TGATGACATTGTTGTCACTC+GGG 0.594864 1:-97095036 MsG0180005879.01.T01:three_prime_UTR
GATGCCCTCATACTCCTCCA+TGG 0.596036 1:+97094970 None:intergenic
CCCTCTCATACTTTATGCGG+TGG 0.596168 1:+97094870 None:intergenic
AGCGTCAATAAGTTTCAACT+AGG 0.599804 1:-97094644 MsG0180005879.01.T01:three_prime_UTR
AGCACCAGTTGACAAAGGGT+TGG 0.602600 1:+97095628 None:intergenic
CCTAACTGATAGACAGTCGA+GGG 0.602746 1:-97096949 MsG0180005879.01.T01:CDS
AACACCAGTTGACACAAACC+AGG 0.604086 1:+97094677 None:intergenic
GAACCCTCTCATACTTTATG+CGG 0.607665 1:+97094867 None:intergenic
AGTACAGCACCAGTTGACAA+AGG 0.607829 1:+97095623 None:intergenic
TTTGAATTATGCCTTTGCTG+AGG 0.608362 1:-97094459 MsG0180005879.01.T01:three_prime_UTR
CAGGATTTGATGCTGGCAAG+AGG 0.625026 1:-97095996 MsG0180005879.01.T01:CDS
ATCATCATTGAAGGAGCTAG+AGG 0.629324 1:-97094950 MsG0180005879.01.T01:three_prime_UTR
TGTTCCATGGAGGAGTATGA+GGG 0.635397 1:-97094974 MsG0180005879.01.T01:three_prime_UTR
AGATGTTTGATCCTCAGCAA+AGG 0.639485 1:+97094448 None:intergenic
CTGGTCTAATTGGACTAGCG+AGG 0.639496 1:-97095012 MsG0180005879.01.T01:three_prime_UTR
TATCATGACAAATATCAGGA+AGG 0.640566 1:-97094832 MsG0180005879.01.T01:three_prime_UTR
ATAGGAGAGATTTAAAGACT+GGG 0.643444 1:-97095839 MsG0180005879.01.T01:intron
CAAGTAGTAAGTGAGCGACC+AGG 0.651003 1:+97095144 None:intergenic
GGCTGCATATACGAGAGCAA+AGG 0.651480 1:-97095657 MsG0180005879.01.T01:CDS
TACAGGTACAATCTTGACAC+CGG 0.656089 1:+97095810 None:intergenic
TTTCTTAACTAGTGCCTCGG+GGG 0.656911 1:+97098310 None:intergenic
ACCACCGCATAAAGTATGAG+AGG 0.661973 1:-97094871 MsG0180005879.01.T01:three_prime_UTR
GAGGATCAAACATCTCAGCA+TGG 0.667075 1:-97094440 MsG0180005879.01.T01:three_prime_UTR
ACCTAACTGATAGACAGTCG+AGG 0.667173 1:-97096950 MsG0180005879.01.T01:CDS
CCACCGCATAAAGTATGAGA+GGG 0.669906 1:-97094870 MsG0180005879.01.T01:three_prime_UTR
ATATATCAATAAAAGAACAA+AGG 0.671857 1:+97094764 None:intergenic
TAACTAAACAAGAACGACAG+TGG 0.678607 1:+97095532 None:intergenic
AAGAATCACCAAAACTAACA+AGG 0.682246 1:-97095110 MsG0180005879.01.T01:three_prime_UTR
GAAACTATGCATTATCAGAG+AGG 0.691201 1:-97094273 MsG0180005879.01.T01:three_prime_UTR
TTGGAAAGGATGTTCCATGG+AGG 0.712019 1:-97094984 MsG0180005879.01.T01:three_prime_UTR
CTAACTGATAGACAGTCGAG+GGG 0.766232 1:-97096948 MsG0180005879.01.T01:CDS
TGGGCAGAAACAGATGACTG+AGG 0.793337 1:-97095597 MsG0180005879.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATTAGTGTT+TGG + Chr1:97094281-97094300 None:intergenic 10.0%
!!! TAAAATTTAAAACAATCAAA+AGG - Chr1:97097128-97097147 MsG0180005879.01.T01:intron 10.0%
!! AAAAGAATTGTATACTTAAT+AGG + Chr1:97095896-97095915 None:intergenic 15.0%
!! AAAGAATTGTATACTTAATA+GGG + Chr1:97095895-97095914 None:intergenic 15.0%
!! AACTACATTATTCAAAAATA+GGG - Chr1:97097290-97097309 MsG0180005879.01.T01:intron 15.0%
!! ATAATAACATTGATATTGAA+AGG + Chr1:97097878-97097897 None:intergenic 15.0%
!! ATATATCAATAAAAGAACAA+AGG + Chr1:97097697-97097716 None:intergenic 15.0%
!! ATTAAGAATCTTATATATAC+CGG + Chr1:97094363-97094382 None:intergenic 15.0%
!! CACTAATAATACATATATAT+AGG + Chr1:97095388-97095407 None:intergenic 15.0%
!!! ACAATTTTCTTTTATGTTAT+AGG - Chr1:97096601-97096620 MsG0180005879.01.T01:intron 15.0%
!!! ACATGTTAACTTTTATTATT+TGG + Chr1:97094653-97094672 None:intergenic 15.0%
!!! GAATGTAAAATAAACAATTT+TGG - Chr1:97098040-97098059 MsG0180005879.01.T01:intron 15.0%
!!! TAAAAGATCTTTTCTATAAT+AGG - Chr1:97094443-97094462 MsG0180005879.01.T01:three_prime_UTR 15.0%
!!! TTATTTTCCAAAATTTGATT+TGG - Chr1:97095266-97095285 MsG0180005879.01.T01:three_prime_UTR 15.0%
!! AACATCGAATCAATATATTT+AGG - Chr1:97095641-97095660 MsG0180005879.01.T01:CDS 20.0%
!! AATATATTGACACAAACTTA+TGG - Chr1:97098216-97098235 MsG0180005879.01.T01:intron 20.0%
!! AATATCAATGTTATTATTGC+AGG - Chr1:97097881-97097900 MsG0180005879.01.T01:intron 20.0%
!! ACAATATTATCCTTAGAAAA+AGG + Chr1:97096162-97096181 None:intergenic 20.0%
!! ACATCGAATCAATATATTTA+GGG - Chr1:97095642-97095661 MsG0180005879.01.T01:CDS 20.0%
!! CAAAAATATCTATATTCGAA+AGG + Chr1:97096029-97096048 None:intergenic 20.0%
!! CAACTACATTATTCAAAAAT+AGG - Chr1:97097289-97097308 MsG0180005879.01.T01:intron 20.0%
!!! ATTCTTTTTCACTTATATCA+TGG - Chr1:97095908-97095927 MsG0180005879.01.T01:intron 20.0%
!!! CCAACTTTTTTTAAGAAAAA+AGG + Chr1:97098119-97098138 None:intergenic 20.0%
!!! CCTTTTTTCTTAAAAAAAGT+TGG - Chr1:97098116-97098135 MsG0180005879.01.T01:intron 20.0%
!!! CTTTCGAATATAGATATTTT+TGG - Chr1:97096027-97096046 MsG0180005879.01.T01:intron 20.0%
!!! TTTTTTAAGAAAAAAGGTGT+GGG + Chr1:97098113-97098132 None:intergenic 20.0%
!!! TTTTTTTAAGAAAAAAGGTG+TGG + Chr1:97098114-97098133 None:intergenic 20.0%
! AAACGATGAATTCAAAGAAA+AGG + Chr1:97096190-97096209 None:intergenic 25.0%
! ACTAAGAAGCTATTAACAAT+TGG - Chr1:97095448-97095467 MsG0180005879.01.T01:three_prime_UTR 25.0%
! ACTAGTTAAGAAAACCATAA+TGG - Chr1:97094158-97094177 MsG0180005879.01.T01:three_prime_UTR 25.0%
! AGAATATCATGACAAATATC+AGG - Chr1:97097622-97097641 MsG0180005879.01.T01:intron 25.0%
! AGAGAGTAAAGAGAAAATAT+TGG + Chr1:97096380-97096399 None:intergenic 25.0%
! AGGAAAATGATGATCAATAA+TGG + Chr1:97095760-97095779 None:intergenic 25.0%
! AGTACAGAGTTATTGTAAAA+AGG + Chr1:97096563-97096582 None:intergenic 25.0%
! ATAATGTCTTGGATTTGTAA+AGG + Chr1:97097380-97097399 None:intergenic 25.0%
! GAAAGATGATAGCAATAATA+AGG + Chr1:97096889-97096908 None:intergenic 25.0%
! GGAAAATGATGATCAATAAT+GGG + Chr1:97095759-97095778 None:intergenic 25.0%
! TCTTTACTCTCTTTGATATT+GGG - Chr1:97096388-97096407 MsG0180005879.01.T01:intron 25.0%
! TGTTGCAGATATTAAGATTA+TGG - Chr1:97095341-97095360 MsG0180005879.01.T01:three_prime_UTR 25.0%
!! ATCAACACCAAATCAAATTT+TGG + Chr1:97095276-97095295 None:intergenic 25.0%
!! ATTCTTTGTTCCTTTTTCTA+AGG - Chr1:97096149-97096168 MsG0180005879.01.T01:intron 25.0%
!! CATGCATTTTTGAATTATAC+AGG + Chr1:97097192-97097211 None:intergenic 25.0%
!! TATTTGAAGTCTACCTAATT+AGG + Chr1:97097074-97097093 None:intergenic 25.0%
!!! AAGCTTTTGTTTTCTTCAAA+AGG - Chr1:97098256-97098275 MsG0180005879.01.T01:intron 25.0%
!!! ATTTTAGCCATTTCCTAATT+AGG - Chr1:97097058-97097077 MsG0180005879.01.T01:intron 25.0%
!!! TTATTATTTGGTGATGAGTT+TGG + Chr1:97094641-97094660 None:intergenic 25.0%
!!! TTTTGAAGAAAACAAAAGCT+TGG + Chr1:97098257-97098276 None:intergenic 25.0%
AAACAATCTTTACCACTTGA+AGG + Chr1:97096760-97096779 None:intergenic 30.0%
AAGAATCACCAAAACTAACA+AGG - Chr1:97097348-97097367 MsG0180005879.01.T01:intron 30.0%
AAGTAGTGATTTACATGCAA+AGG + Chr1:97096324-97096343 None:intergenic 30.0%
AAGTCTACCTAATTAGGAAA+TGG + Chr1:97097068-97097087 None:intergenic 30.0%
AATAATGTAGTTGCAGTTGT+TGG + Chr1:97097282-97097301 None:intergenic 30.0%
ACACTTTATAGCACTTACAT+TGG + Chr1:97096053-97096072 None:intergenic 30.0%
ATACCGGAAGAGTAATAATT+AGG + Chr1:97094347-97094366 None:intergenic 30.0%
ATAGGAGAGATTTAAAGACT+GGG - Chr1:97096619-97096638 MsG0180005879.01.T01:intron 30.0%
ATTATTCAAAAATAGGGTCC+TGG - Chr1:97097296-97097315 MsG0180005879.01.T01:intron 30.0%
CAAAAAAAAACTAGTGTCCT+TGG - Chr1:97094305-97094324 MsG0180005879.01.T01:three_prime_UTR 30.0%
CACATTCAAAATCATACTCA+AGG + Chr1:97096258-97096277 None:intergenic 30.0%
CATTCTATTGACATCAAGAA+AGG - Chr1:97094520-97094539 MsG0180005879.01.T01:three_prime_UTR 30.0%
CTAATACAACGTGTTTAAAC+AGG + Chr1:97098303-97098322 None:intergenic 30.0%
CTCTTTACTCTCTTTGATAT+TGG - Chr1:97096387-97096406 MsG0180005879.01.T01:intron 30.0%
CTTTCTTGATGTCAATAGAA+TGG + Chr1:97094522-97094541 None:intergenic 30.0%
GAATGTGAAAACACTTTGAA+TGG - Chr1:97096271-97096290 MsG0180005879.01.T01:intron 30.0%
GACCTATTATAAAGTCTACT+TGG - Chr1:97094465-97094484 MsG0180005879.01.T01:three_prime_UTR 30.0%
GCTTGGATTTGTACATAAAT+AGG + Chr1:97095780-97095799 None:intergenic 30.0%
GTAATGAAGTAATGCTACAT+TGG + Chr1:97095956-97095975 None:intergenic 30.0%
GTACAATCCATATCATTCTA+AGG + Chr1:97095587-97095606 None:intergenic 30.0%
GTGTTTGATAAAATACGCTT+GGG + Chr1:97094588-97094607 None:intergenic 30.0%
GTTTGATCCTTAGAATGATA+TGG - Chr1:97095577-97095596 MsG0180005879.01.T01:CDS 30.0%
TAAAGAACTTCTGACCAAAA+TGG - Chr1:97097952-97097971 MsG0180005879.01.T01:intron 30.0%
TACCGGAAGAGTAATAATTA+GGG + Chr1:97094346-97094365 None:intergenic 30.0%
TATAGGAGAGATTTAAAGAC+TGG - Chr1:97096618-97096637 MsG0180005879.01.T01:intron 30.0%
TATCATGACAAATATCAGGA+AGG - Chr1:97097626-97097645 MsG0180005879.01.T01:intron 30.0%
TCTTTCTTTCACTCTATGAT+AGG + Chr1:97096962-97096981 None:intergenic 30.0%
TGTAGCATTACTTCATTACT+CGG - Chr1:97095957-97095976 MsG0180005879.01.T01:CDS 30.0%
TGTATACTTAATAGGGAACT+TGG + Chr1:97095888-97095907 None:intergenic 30.0%
TTGGAAGAAGAAAGAAAAAG+AGG + Chr1:97097263-97097282 None:intergenic 30.0%
TTGTCTAATTGAGGTTATCA+CGG + Chr1:97094559-97094578 None:intergenic 30.0%
! AAAATGCATGTCTCTTTTCT+TGG - Chr1:97097202-97097221 MsG0180005879.01.T01:intron 30.0%
! AACATTTTCAACCCAAATTG+AGG + Chr1:97095231-97095250 None:intergenic 30.0%
! ACAATGCCAAAATTCCATTT+TGG + Chr1:97097969-97097988 None:intergenic 30.0%
! CTGATGTGAGACTATTTTAT+GGG - Chr1:97096486-97096505 MsG0180005879.01.T01:intron 30.0%
! TCTGATGTGAGACTATTTTA+TGG - Chr1:97096485-97096504 MsG0180005879.01.T01:intron 30.0%
! TGACAACAATGTCATCATTT+TGG + Chr1:97097419-97097438 None:intergenic 30.0%
! TGATGTGAGACTATTTTATG+GGG - Chr1:97096487-97096506 MsG0180005879.01.T01:intron 30.0%
! TTCTGACCAAAATGGAATTT+TGG - Chr1:97097960-97097979 MsG0180005879.01.T01:intron 30.0%
!! ATGATGGATCAATAATGTCT+TGG + Chr1:97097391-97097410 None:intergenic 30.0%
!! CAATTTGGGTTGAAAATGTT+AGG - Chr1:97095231-97095250 MsG0180005879.01.T01:three_prime_UTR 30.0%
!! CGACAGTAATGATTGTTTTT+AGG - Chr1:97096982-97097001 MsG0180005879.01.T01:intron 30.0%
!! CTTTGCAATTTTAATCATCG+CGG + Chr1:97097100-97097119 None:intergenic 30.0%
!! GGATAAAACCTTGTTAGTTT+TGG + Chr1:97097359-97097378 None:intergenic 30.0%
ACATCTATTCTTGTTGCTGA+TGG - Chr1:97097909-97097928 MsG0180005879.01.T01:intron 35.0%
ACTCTTGCACTTACTTTCTT+TGG + Chr1:97095559-97095578 None:intergenic 35.0%
AGAACAGTTCCAAATTTCTC+AGG + Chr1:97095171-97095190 None:intergenic 35.0%
AGCGTCAATAAGTTTCAACT+AGG - Chr1:97097814-97097833 MsG0180005879.01.T01:intron 35.0%
ATAGACATGATTACCTTTGC+AGG - Chr1:97096780-97096799 MsG0180005879.01.T01:intron 35.0%
ATCGTAAAATCAAGGAAGCT+TGG + Chr1:97095797-97095816 None:intergenic 35.0%
ATGACACATTCACAACCTAA+AGG + Chr1:97095479-97095498 None:intergenic 35.0%
ATGATGACATTGTTGTCACT+CGG - Chr1:97097421-97097440 MsG0180005879.01.T01:intron 35.0%
ATGGAACATCCTTTCCAAAA+CGG + Chr1:97097472-97097491 None:intergenic 35.0%
CAGTATCTTCAGCTTAAAGT+CGG - Chr1:97094954-97094973 MsG0180005879.01.T01:three_prime_UTR 35.0%
CCAAGATACTCATACCATTA+TGG + Chr1:97094175-97094194 None:intergenic 35.0%
CCATAATGGTATGAGTATCT+TGG - Chr1:97094172-97094191 MsG0180005879.01.T01:three_prime_UTR 35.0%
GAAACTATGCATTATCAGAG+AGG - Chr1:97098185-97098204 MsG0180005879.01.T01:intron 35.0%
GAATTCATCGTTTCTACTGA+TGG - Chr1:97096197-97096216 MsG0180005879.01.T01:intron 35.0%
GACCCTAATTATTACTCTTC+CGG - Chr1:97094341-97094360 MsG0180005879.01.T01:three_prime_UTR 35.0%
GGCCAAGTAGACTTTATAAT+AGG + Chr1:97094470-97094489 None:intergenic 35.0%
GGCTATTCATCGTAAAATCA+AGG + Chr1:97095805-97095824 None:intergenic 35.0%
GGTGTTTGATAAAATACGCT+TGG + Chr1:97094589-97094608 None:intergenic 35.0%
TAACTAAACAAGAACGACAG+TGG + Chr1:97096929-97096948 None:intergenic 35.0%
TAGATGTCTTAGAAAGTGAG+TGG + Chr1:97094494-97094513 None:intergenic 35.0%
TGGATTGTACTGAATGTACT+CGG - Chr1:97095597-97095616 MsG0180005879.01.T01:CDS 35.0%
TGTCATGATATTCTCCCAAT+TGG + Chr1:97097616-97097635 None:intergenic 35.0%
TTACGATTCAAAATCGCTTG+TGG + Chr1:97095861-97095880 None:intergenic 35.0%
TTATTGTGTGCAGTCCAATT+CGG - Chr1:97096426-97096445 MsG0180005879.01.T01:intron 35.0%
TTTAAAGACTGGGAATCTTC+CGG - Chr1:97096629-97096648 MsG0180005879.01.T01:intron 35.0%
TTTAAGCTGAAGATACTGAC+CGG + Chr1:97094952-97094971 None:intergenic 35.0%
TTTGAATTATGCCTTTGCTG+AGG - Chr1:97097999-97098018 MsG0180005879.01.T01:intron 35.0%
TTTGCTTAACTACCTTCAAG+TGG - Chr1:97096745-97096764 MsG0180005879.01.T01:intron 35.0%
! AGGTAAAGTGTGTGGAATTT+TGG - Chr1:97096717-97096736 MsG0180005879.01.T01:intron 35.0%
! ATTATTAGTGCCACTCTGTT+CGG - Chr1:97095398-97095417 MsG0180005879.01.T01:three_prime_UTR 35.0%
! CACTTTTGCAGCTCAAATAT+AGG - Chr1:97098080-97098099 MsG0180005879.01.T01:intron 35.0%
! CATCATTTTGGACAGTATGA+TGG + Chr1:97097407-97097426 None:intergenic 35.0%
! GGAATGGGTTTGATATTAGT+CGG - Chr1:97095136-97095155 MsG0180005879.01.T01:three_prime_UTR 35.0%
! TTAGGTTGTGAATGTGTCAT+TGG - Chr1:97095479-97095498 MsG0180005879.01.T01:three_prime_UTR 35.0%
!! AGTTTTGGTGATTCTTCTAC+CGG + Chr1:97097344-97097363 None:intergenic 35.0%
!!! TTTTGGTGAAGAGTGTTGTT+GGG - Chr1:97095051-97095070 MsG0180005879.01.T01:three_prime_UTR 35.0%
!!! TTTTTGGTGAAGAGTGTTGT+TGG - Chr1:97095050-97095069 MsG0180005879.01.T01:three_prime_UTR 35.0%
AAGCTAAGCACAAGTCCATA+GGG - Chr1:97095702-97095721 MsG0180005879.01.T01:intron 40.0%
AAGTATGAGAGGGTTCCAAT+TGG - Chr1:97097598-97097617 MsG0180005879.01.T01:intron 40.0%
ACAAAAAACTCCGAACAGAG+TGG + Chr1:97095411-97095430 None:intergenic 40.0%
ACAGTTCCAAATTTCTCAGG+TGG + Chr1:97095168-97095187 None:intergenic 40.0%
AGATGTTTGATCCTCAGCAA+AGG + Chr1:97098013-97098032 None:intergenic 40.0%
AGTATGAGAGGGTTCCAATT+GGG - Chr1:97097599-97097618 MsG0180005879.01.T01:intron 40.0%
ATAGCAAGAAACGACGGTTT+CGG + Chr1:97094987-97095006 None:intergenic 40.0%
ATCAAACCCATTCCCATAAC+CGG + Chr1:97095130-97095149 None:intergenic 40.0%
ATCACTCTACAAGTCTACCA+AGG + Chr1:97096109-97096128 None:intergenic 40.0%
ATCATCATTGAAGGAGCTAG+AGG - Chr1:97097508-97097527 MsG0180005879.01.T01:intron 40.0%
ATGTCTTAGAAAGTGAGTGG+TGG + Chr1:97094491-97094510 None:intergenic 40.0%
ATTCGGTCACTTATTGAGTC+AGG - Chr1:97096443-97096462 MsG0180005879.01.T01:intron 40.0%
ATTGAGTCAGGATTTGATGC+TGG - Chr1:97096455-97096474 MsG0180005879.01.T01:intron 40.0%
ATTGTACTGAATGTACTCGG+AGG - Chr1:97095600-97095619 MsG0180005879.01.T01:CDS 40.0%
CAGTTCCAAATTTCTCAGGT+GGG + Chr1:97095167-97095186 None:intergenic 40.0%
CGCTTGTGGCATAACATAAT+TGG + Chr1:97095847-97095866 None:intergenic 40.0%
CTCACTTACTACTTGTACAC+CGG - Chr1:97097322-97097341 MsG0180005879.01.T01:intron 40.0%
CTTTGTACAGGTAAAGTGTG+TGG - Chr1:97096709-97096728 MsG0180005879.01.T01:intron 40.0%
GAACCCTCTCATACTTTATG+CGG + Chr1:97097594-97097613 None:intergenic 40.0%
GACTCAATAAGTGACCGAAT+TGG + Chr1:97096443-97096462 None:intergenic 40.0%
GTCAGTTTCTGCCTCAATTT+GGG - Chr1:97095217-97095236 MsG0180005879.01.T01:three_prime_UTR 40.0%
GTTTCTGTTGCAACTCTATC+TGG - Chr1:97096298-97096317 MsG0180005879.01.T01:intron 40.0%
TAACAATTGGCGTTGCCTTT+AGG - Chr1:97095461-97095480 MsG0180005879.01.T01:three_prime_UTR 40.0%
TACAGGTACAATCTTGACAC+CGG + Chr1:97096651-97096670 None:intergenic 40.0%
TCATCTGGTTGAGACAATAC+AGG + Chr1:97096668-97096687 None:intergenic 40.0%
TGATGACATTGTTGTCACTC+GGG - Chr1:97097422-97097441 MsG0180005879.01.T01:intron 40.0%
TGGCATAACATAATTGGTCG+AGG + Chr1:97095841-97095860 None:intergenic 40.0%
TGGTAGACTTGTAGAGTGAT+TGG - Chr1:97096109-97096128 MsG0180005879.01.T01:intron 40.0%
TGTCTCAACCAGATGATAGT+TGG - Chr1:97096672-97096691 MsG0180005879.01.T01:intron 40.0%
TTATCCAACCCTTTGTCAAC+TGG - Chr1:97096826-97096845 MsG0180005879.01.T01:intron 40.0%
TTTAGGAAACCGAACCTACT+AGG - Chr1:97096999-97097018 MsG0180005879.01.T01:intron 40.0%
! GCTATAAAGTGTTTCAGCCA+TGG - Chr1:97096061-97096080 MsG0180005879.01.T01:intron 40.0%
! GGTTTTCTTAACTAGTGCCT+CGG + Chr1:97094154-97094173 None:intergenic 40.0%
! GTTTTCTTAACTAGTGCCTC+GGG + Chr1:97094153-97094172 None:intergenic 40.0%
! TTTTCTTAACTAGTGCCTCG+GGG + Chr1:97094152-97094171 None:intergenic 40.0%
!! GAGTGGTGTGTTTGAGTTTT+TGG - Chr1:97095034-97095053 MsG0180005879.01.T01:three_prime_UTR 40.0%
!! TATGAGGGCATCATCATTGA+AGG - Chr1:97097499-97097518 MsG0180005879.01.T01:intron 40.0%
!!! GTTTTGGAAAGGATGTTCCA+TGG - Chr1:97097471-97097490 MsG0180005879.01.T01:intron 40.0%
AACACCAGTTGACACAAACC+AGG + Chr1:97097784-97097803 None:intergenic 45.0%
AACTGTTCTGTCTTTGCCAC+TGG - Chr1:97095182-97095201 MsG0180005879.01.T01:three_prime_UTR 45.0%
ACCACCGCATAAAGTATGAG+AGG - Chr1:97097587-97097606 MsG0180005879.01.T01:intron 45.0%
ACCTAACTGATAGACAGTCG+AGG - Chr1:97095508-97095527 MsG0180005879.01.T01:three_prime_UTR 45.0%
AGAGCTAGTCCTAGTAGGTT+CGG + Chr1:97097011-97097030 None:intergenic 45.0%
AGTACAGCACCAGTTGACAA+AGG + Chr1:97096838-97096857 None:intergenic 45.0%
ATCGACCCACCTGAGAAATT+TGG - Chr1:97095159-97095178 MsG0180005879.01.T01:three_prime_UTR 45.0%
ATTCCAGAGCTAGTCCTAGT+AGG + Chr1:97097016-97097035 None:intergenic 45.0%
CAACCAGATGATAGTTGGAC+TGG - Chr1:97096677-97096696 MsG0180005879.01.T01:intron 45.0%
CATCTCTCAATACAGTGTCC+TGG - Chr1:97097763-97097782 MsG0180005879.01.T01:intron 45.0%
CCACCGCATAAAGTATGAGA+GGG - Chr1:97097588-97097607 MsG0180005879.01.T01:intron 45.0%
CCACTCTTAATCGCAAGCTT+CGG + Chr1:97095020-97095039 None:intergenic 45.0%
CCTAACTGATAGACAGTCGA+GGG - Chr1:97095509-97095528 MsG0180005879.01.T01:three_prime_UTR 45.0%
CCTGAAGAGAATGGCTTATC+AGG - Chr1:97096517-97096536 MsG0180005879.01.T01:intron 45.0%
CCTGATAAGCCATTCTCTTC+AGG + Chr1:97096520-97096539 None:intergenic 45.0%
CTAACTGATAGACAGTCGAG+GGG - Chr1:97095510-97095529 MsG0180005879.01.T01:three_prime_UTR 45.0%
CTCTACAAGTCTACCAAGGA+AGG + Chr1:97096105-97096124 None:intergenic 45.0%
CTTAGTCCGGTTATGGGAAT+GGG - Chr1:97095121-97095140 MsG0180005879.01.T01:three_prime_UTR 45.0%
GAAAAGTCTCCTTCTCCCTA+TGG + Chr1:97095720-97095739 None:intergenic 45.0%
GAAGCGATAGCAAGAAACGA+CGG + Chr1:97094993-97095012 None:intergenic 45.0%
GAAGCTAAGCACAAGTCCAT+AGG - Chr1:97095701-97095720 MsG0180005879.01.T01:intron 45.0%
GAGGATCAAACATCTCAGCA+TGG - Chr1:97098018-97098037 MsG0180005879.01.T01:intron 45.0%
GGATGTTGTTGAGCTTAGTC+CGG - Chr1:97095108-97095127 MsG0180005879.01.T01:three_prime_UTR 45.0%
GGCAGAAACTGACCTAATTC+CGG + Chr1:97095210-97095229 None:intergenic 45.0%
GGGTGCGTATTGTCTAATTG+AGG + Chr1:97094568-97094587 None:intergenic 45.0%
GGTCAGTTTCTGCCTCAATT+TGG - Chr1:97095216-97095235 MsG0180005879.01.T01:three_prime_UTR 45.0%
GTACAGCACCAGTTGACAAA+GGG + Chr1:97096837-97096856 None:intergenic 45.0%
GTGATGAGTTTGGTCAGAGT+CGG + Chr1:97094631-97094650 None:intergenic 45.0%
GTGTTTGGCGACACTAGTTA+AGG + Chr1:97094266-97094285 None:intergenic 45.0%
GTTGAGCTTAGTCCGGTTAT+GGG - Chr1:97095115-97095134 MsG0180005879.01.T01:three_prime_UTR 45.0%
TCATTGAAGGAGCTAGAGGA+TGG - Chr1:97097512-97097531 MsG0180005879.01.T01:intron 45.0%
TCTCCAGTCCAACTATCATC+TGG + Chr1:97096683-97096702 None:intergenic 45.0%
TGAGAGATGAAGCAGCTAAC+TGG + Chr1:97097752-97097771 None:intergenic 45.0%
TGTTGAGCTTAGTCCGGTTA+TGG - Chr1:97095114-97095133 MsG0180005879.01.T01:three_prime_UTR 45.0%
TTGGAAAGGATGTTCCATGG+AGG - Chr1:97097474-97097493 MsG0180005879.01.T01:intron 45.0%
TTTCAGCCATGGCTGTAAGA+GGG - Chr1:97096072-97096091 MsG0180005879.01.T01:intron 45.0%
TTTCTTAACTAGTGCCTCGG+GGG + Chr1:97094151-97094170 None:intergenic 45.0%
! AGCCATTCTCTTCAGGTTTC+TGG + Chr1:97096513-97096532 None:intergenic 45.0%
! ATGGTGGGGTTAGATTGAAG+CGG + Chr1:97094764-97094783 None:intergenic 45.0%
! ATGTTCCATGGAGGAGTATG+AGG - Chr1:97097483-97097502 MsG0180005879.01.T01:intron 45.0%
! CGTTGTGTGGGTTGAAGAAA+GGG - Chr1:97095087-97095106 MsG0180005879.01.T01:three_prime_UTR 45.0%
! GAAGCAGCTAACTGGTTCAT+GGG + Chr1:97097744-97097763 None:intergenic 45.0%
! GATAGTTGGACTGGAGAAAG+TGG - Chr1:97096686-97096705 MsG0180005879.01.T01:intron 45.0%
! GATGAGGCGGTGTTAATGAA+AGG + Chr1:97094680-97094699 None:intergenic 45.0%
! GGTTGTGAATGTGTCATTGG+TGG - Chr1:97095482-97095501 MsG0180005879.01.T01:three_prime_UTR 45.0%
! TGAAGCAGCTAACTGGTTCA+TGG + Chr1:97097745-97097764 None:intergenic 45.0%
! TGTTCCATGGAGGAGTATGA+GGG - Chr1:97097484-97097503 MsG0180005879.01.T01:intron 45.0%
!! CAACTGGTGCTGTACTTTGT+GGG - Chr1:97096842-97096861 MsG0180005879.01.T01:intron 45.0%
!! GGTCTTGTTAACTAGTGCCA+AGG + Chr1:97094325-97094344 None:intergenic 45.0%
!! TCAACTGGTGCTGTACTTTG+TGG - Chr1:97096841-97096860 MsG0180005879.01.T01:intron 45.0%
!! TGGAGAAAGTGGCTTTGTAC+AGG - Chr1:97096697-97096716 MsG0180005879.01.T01:intron 45.0%
AACGTGGAAGAGTGACTCAG+CGG + Chr1:97094881-97094900 None:intergenic 50.0%
AACTTGCCCTCTTACAGCCA+TGG + Chr1:97096081-97096100 None:intergenic 50.0%
AGAGGGCAAGTTACCTTCCT+TGG - Chr1:97096089-97096108 MsG0180005879.01.T01:intron 50.0%
AGCACAAGTCCATAGGGAGA+AGG - Chr1:97095708-97095727 MsG0180005879.01.T01:intron 50.0%
AGCACCAGTTGACAAAGGGT+TGG + Chr1:97096833-97096852 None:intergenic 50.0%
AGTTTGGTCAGAGTCGGAAG+TGG + Chr1:97094625-97094644 None:intergenic 50.0%
ATAGACAGTCGAGGGGAACT+AGG - Chr1:97095517-97095536 MsG0180005879.01.T01:exon 50.0%
CAAGTAGTAAGTGAGCGACC+AGG + Chr1:97097317-97097336 None:intergenic 50.0%
CAGGATTTGATGCTGGCAAG+AGG - Chr1:97096462-97096481 MsG0180005879.01.T01:intron 50.0%
CCCTCGACTGTCTATCAGTT+AGG + Chr1:97095512-97095531 None:intergenic 50.0%
CCCTCTCATACTTTATGCGG+TGG + Chr1:97097591-97097610 None:intergenic 50.0%
CCGAAGCTTGCGATTAAGAG+TGG - Chr1:97095017-97095036 MsG0180005879.01.T01:three_prime_UTR 50.0%
CGTAGGATGGACATGGGAAA+GGG + Chr1:97094741-97094760 None:intergenic 50.0%
CTCGCTAGTCCAATTAGACC+AGG + Chr1:97097448-97097467 None:intergenic 50.0%
CTCGTATATGCAGCCTGCAA+AGG + Chr1:97096796-97096815 None:intergenic 50.0%
CTCTTAATCGCAAGCTTCGG+CGG + Chr1:97095017-97095036 None:intergenic 50.0%
GCTTAGTCCGGTTATGGGAA+TGG - Chr1:97095120-97095139 MsG0180005879.01.T01:three_prime_UTR 50.0%
GGCCAGAAACCTGAAGAGAA+TGG - Chr1:97096508-97096527 MsG0180005879.01.T01:intron 50.0%
GGCTGCATATACGAGAGCAA+AGG - Chr1:97096801-97096820 MsG0180005879.01.T01:intron 50.0%
GGTCGAGGCAAATTGACATG+TGG + Chr1:97095826-97095845 None:intergenic 50.0%
GTAGGATGGACATGGGAAAG+GGG + Chr1:97094740-97094759 None:intergenic 50.0%
GTGTCTATGACTGCACACTC+TGG - Chr1:97098141-97098160 MsG0180005879.01.T01:intron 50.0%
GTTTCAGCCATGGCTGTAAG+AGG - Chr1:97096071-97096090 MsG0180005879.01.T01:intron 50.0%
TAGATTGAAGCGGCGTAGGA+TGG + Chr1:97094754-97094773 None:intergenic 50.0%
TAGGATGGACATGGGAAAGG+GGG + Chr1:97094739-97094758 None:intergenic 50.0%
TCTGTCTTTGCCACTGGATC+CGG - Chr1:97095188-97095207 MsG0180005879.01.T01:three_prime_UTR 50.0%
TGACCTAATTCCGGATCCAG+TGG + Chr1:97095201-97095220 None:intergenic 50.0%
TGGGCAGAAACAGATGACTG+AGG - Chr1:97096861-97096880 MsG0180005879.01.T01:intron 50.0%
TTGCCACTGGATCCGGAATT+AGG - Chr1:97095195-97095214 MsG0180005879.01.T01:three_prime_UTR 50.0%
! GCGTTGTGTGGGTTGAAGAA+AGG - Chr1:97095086-97095105 MsG0180005879.01.T01:three_prime_UTR 50.0%
! GTGTCCTGGTTTGTGTCAAC+TGG - Chr1:97097777-97097796 MsG0180005879.01.T01:intron 50.0%
! TGCCAGTTAAGCTGGCTCTT+GGG - Chr1:97097537-97097556 MsG0180005879.01.T01:intron 50.0%
! TTGCCAGTTAAGCTGGCTCT+TGG - Chr1:97097536-97097555 MsG0180005879.01.T01:intron 50.0%
!! CTGGTCTAATTGGACTAGCG+AGG - Chr1:97097446-97097465 MsG0180005879.01.T01:intron 50.0%
!! GAACCTACTAGGACTAGCTC+TGG - Chr1:97097010-97097029 MsG0180005879.01.T01:intron 50.0%
!! GGATGGATTGCCAGTTAAGC+TGG - Chr1:97097529-97097548 MsG0180005879.01.T01:intron 50.0%
AAAGTGCGCATGGGAGTGGA+GGG + Chr1:97094709-97094728 None:intergenic 55.0%
AAGCGGCGTAGGATGGACAT+GGG + Chr1:97094747-97094766 None:intergenic 55.0%
ACATTGTTGTCACTCGGGCC+TGG - Chr1:97097427-97097446 MsG0180005879.01.T01:intron 55.0%
ATGGACATGGGAAAGGGGGT+GGG + Chr1:97094735-97094754 None:intergenic 55.0%
CGGAAACGTCGATGGAAACG+TGG + Chr1:97094897-97094916 None:intergenic 55.0%
GACGGTGGTGTCTTGACGTA+CGG + Chr1:97094824-97094843 None:intergenic 55.0%
GAGTGGAGGGTAAGAGGATG+AGG + Chr1:97094696-97094715 None:intergenic 55.0%
GATGCCCTCATACTCCTCCA+TGG + Chr1:97097491-97097510 None:intergenic 55.0%
GCGTAGGATGGACATGGGAA+AGG + Chr1:97094742-97094761 None:intergenic 55.0%
GGGTTAGATTGAAGCGGCGT+AGG + Chr1:97094758-97094777 None:intergenic 55.0%
TAAAGTGCGCATGGGAGTGG+AGG + Chr1:97094710-97094729 None:intergenic 55.0%
TACGTCAAGACACCACCGTC+TGG - Chr1:97094824-97094843 MsG0180005879.01.T01:three_prime_UTR 55.0%
TCACTCGGGCCTGGTCTAAT+TGG - Chr1:97097436-97097455 MsG0180005879.01.T01:intron 55.0%
TGGAGGGTAAGAGGATGAGG+CGG + Chr1:97094693-97094712 None:intergenic 55.0%
TGTGAGACGTGGCAAGGTCA+GGG + Chr1:97094923-97094942 None:intergenic 55.0%
TTGGTCAGAGTCGGAAGTGG+CGG + Chr1:97094622-97094641 None:intergenic 55.0%
! CCAGTTAAGCTGGCTCTTGG+GGG - Chr1:97097539-97097558 MsG0180005879.01.T01:intron 55.0%
! GCCAGTTAAGCTGGCTCTTG+GGG - Chr1:97097538-97097557 MsG0180005879.01.T01:intron 55.0%
!! CCACTGCAGAAGCGTTGTGT+GGG - Chr1:97095075-97095094 MsG0180005879.01.T01:three_prime_UTR 55.0%
!! TCCACTGCAGAAGCGTTGTG+TGG - Chr1:97095074-97095093 MsG0180005879.01.T01:three_prime_UTR 55.0%
!!! CTAGCGAGGCCGTTTTGGAA+AGG - Chr1:97097460-97097479 MsG0180005879.01.T01:intron 55.0%
!!! TTGGACTAGCGAGGCCGTTT+TGG - Chr1:97097455-97097474 MsG0180005879.01.T01:intron 55.0%
CCCACACAACGCTTCTGCAG+TGG + Chr1:97095078-97095097 None:intergenic 60.0%
CCCCCAAGAGCCAGCTTAAC+TGG + Chr1:97097542-97097561 None:intergenic 60.0%
CTCAGCGGCAGGTTCGATCT+CGG + Chr1:97094866-97094885 None:intergenic 60.0%
GAAGCGGCGTAGGATGGACA+TGG + Chr1:97094748-97094767 None:intergenic 60.0%
GAGAGGAGCTGGAGTCCAGA+CGG + Chr1:97094842-97094861 None:intergenic 60.0%
GATGGACATGGGAAAGGGGG+TGG + Chr1:97094736-97094755 None:intergenic 60.0%
GCAGGTTCGATCTCGGAGAG+AGG + Chr1:97094859-97094878 None:intergenic 60.0%
GCATGGGAGTGGAGGGTAAG+AGG + Chr1:97094702-97094721 None:intergenic 60.0%
GGCTAAAGTGCGCATGGGAG+TGG + Chr1:97094713-97094732 None:intergenic 60.0%
GGGGGCAGTGGGACAGAAAA+CGG - Chr1:97097557-97097576 MsG0180005879.01.T01:intron 60.0%
GGTGGGGCTAAAGTGCGCAT+GGG + Chr1:97094718-97094737 None:intergenic 60.0%
GGTGGTGTCTTGACGTACGG+CGG + Chr1:97094821-97094840 None:intergenic 60.0%
GTGTGAGACGTGGCAAGGTC+AGG + Chr1:97094924-97094943 None:intergenic 60.0%
TCGATCTCGGAGAGAGGAGC+TGG + Chr1:97094853-97094872 None:intergenic 60.0%
TGACGGAGACGGTGGATGGT+GGG + Chr1:97094779-97094798 None:intergenic 60.0%
TGGAAGAGTGACTCAGCGGC+AGG + Chr1:97094877-97094896 None:intergenic 60.0%
TGGACATGGGAAAGGGGGTG+GGG + Chr1:97094734-97094753 None:intergenic 60.0%
TTGACGTACGGCGGCGGAAA+GGG + Chr1:97094812-97094831 None:intergenic 60.0%
! GAAAGGGTGCGAGTCGGTGA+CGG + Chr1:97094796-97094815 None:intergenic 60.0%
ACGTGGCAAGGTCAGGGCGT+CGG + Chr1:97094917-97094936 None:intergenic 65.0%
AGGAGCTGGAGTCCAGACGG+TGG + Chr1:97094839-97094858 None:intergenic 65.0%
AGTCGGAAGTGGCGGCAGGA+GGG + Chr1:97094614-97094633 None:intergenic 65.0%
CGCGTGTGTGAGACGTGGCA+AGG + Chr1:97094929-97094948 None:intergenic 65.0%
CTTGACGTACGGCGGCGGAA+AGG + Chr1:97094813-97094832 None:intergenic 65.0%
GACGGAGACGGTGGATGGTG+GGG + Chr1:97094778-97094797 None:intergenic 65.0%
GGGTGGGGCTAAAGTGCGCA+TGG + Chr1:97094719-97094738 None:intergenic 65.0%
GGTGTCTTGACGTACGGCGG+CGG + Chr1:97094818-97094837 None:intergenic 65.0%
TCAGAGTCGGAAGTGGCGGC+AGG + Chr1:97094618-97094637 None:intergenic 65.0%
! AACTAGTGCCTCGGGGGCAC+CGG + Chr1:97094145-97094164 None:intergenic 65.0%
! AAGCTGGCTCTTGGGGGCAG+TGG - Chr1:97097545-97097564 MsG0180005879.01.T01:intron 65.0%
! AGCTGGCTCTTGGGGGCAGT+GGG - Chr1:97097546-97097565 MsG0180005879.01.T01:intron 65.0%
! GTGACGGAGACGGTGGATGG+TGG + Chr1:97094780-97094799 None:intergenic 65.0%
!! CAGGGCGTCGGAAACGTCGA+TGG + Chr1:97094905-97094924 None:intergenic 65.0%
!! GTGCGAGTCGGTGACGGAGA+CGG + Chr1:97094790-97094809 None:intergenic 65.0%
!! TCGGTGACGGAGACGGTGGA+TGG + Chr1:97094783-97094802 None:intergenic 65.0%
ACCGGCGCGTGTGTGAGACG+TGG + Chr1:97094934-97094953 None:intergenic 70.0%
GAGTCGGAAGTGGCGGCAGG+AGG + Chr1:97094615-97094634 None:intergenic 70.0%
GCCACGTCTCACACACGCGC+CGG - Chr1:97094930-97094949 MsG0180005879.01.T01:three_prime_UTR 70.0%
GTCGGAAGTGGCGGCAGGAG+GGG + Chr1:97094613-97094632 None:intergenic 70.0%
! GCGGCGGAAAGGGTGCGAGT+CGG + Chr1:97094802-97094821 None:intergenic 70.0%
!! CGAGTCGGTGACGGAGACGG+TGG + Chr1:97094787-97094806 None:intergenic 70.0%
GGAAGTGGCGGCAGGAGGGG+CGG + Chr1:97094610-97094629 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 97094135 97098345 97094135 ID=MsG0180005879.01;Name=MsG0180005879.01
Chr1 mRNA 97094135 97098345 97094135 ID=MsG0180005879.01.T01;Parent=MsG0180005879.01;Name=MsG0180005879.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.5|0.4|0.8|1|1|5|1400|146
Chr1 exon 97094135 97095678 97094135 ID=MsG0180005879.01.T01:exon:10776;Parent=MsG0180005879.01.T01
Chr1 exon 97095762 97095857 97095762 ID=MsG0180005879.01.T01:exon:10775;Parent=MsG0180005879.01.T01
Chr1 exon 97095942 97096015 97095942 ID=MsG0180005879.01.T01:exon:10774;Parent=MsG0180005879.01.T01
Chr1 exon 97096916 97096997 97096916 ID=MsG0180005879.01.T01:exon:10773;Parent=MsG0180005879.01.T01
Chr1 exon 97098301 97098345 97098301 ID=MsG0180005879.01.T01:exon:10772;Parent=MsG0180005879.01.T01
Chr1 CDS 97098301 97098345 97098301 ID=MsG0180005879.01.T01:cds;Parent=MsG0180005879.01.T01
Chr1 CDS 97096916 97096997 97096916 ID=MsG0180005879.01.T01:cds;Parent=MsG0180005879.01.T01
Chr1 CDS 97095942 97096015 97095942 ID=MsG0180005879.01.T01:cds;Parent=MsG0180005879.01.T01
Chr1 CDS 97095762 97095857 97095762 ID=MsG0180005879.01.T01:cds;Parent=MsG0180005879.01.T01
Chr1 CDS 97095535 97095678 97095535 ID=MsG0180005879.01.T01:cds;Parent=MsG0180005879.01.T01
Chr1 three_prime_UTR 97094135 97095534 97094135 ID=MsG0180005879.01.T01:three_prime_utr;Parent=MsG0180005879.01.T01
Gene Sequence

>MsG0180005879.01.T01

ATGTTAACCGGTGCCCCCGAGGCACTAGTTAAGAAAACCATAATGGTTGTGAATGTGTCATTGGTGGATAACCTAACTGATAGACAGTCGAGGGGAACTAGGAGATCTATGTTAATAGCCAAAGAAAGATTTGATGCTGGCAAGAGGTCTGATGTGAGACTATTTTATGGGGCCAGAAACCTGAAGAGAATGGCTTATCAGGAGAGATTTAAAGACTGGGAATCTTCCGGTGTCAAGATTGTACCTGTATTGTCTCAACCAGATGATAGTTGGACTGGAGAAAGTGGCTTTGTACAGGCTGCATATACGAGAGCAAAGGAATTATCCAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGGTGCCTTATTATTGCTATCATCTTTCATTGTCTAGCTACATAGCCACTGTCGTTCTTGTTTAG

Protein sequence

>MsG0180005879.01.T01

MLTGAPEALVKKTIMVVNVSLVDNLTDRQSRGTRRSMLIAKERFDAGKRSDVRLFYGARNLKRMAYQERFKDWESSGVKIVPVLSQPDDSWTGESGFVQAAYTRAKELSNPLSTGAVLCGQKQMTEVPYYCYHLSLSSYIATVVLV*