Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005854.01.T01 | XP_003592549.1 | 95.796 | 452 | 6 | 2 | 1 | 442 | 12 | 460 | 0 | 868 |
| MsG0180005854.01.T04 | XP_003592549.1 | 98.009 | 452 | 6 | 1 | 1 | 452 | 12 | 460 | 0 | 895 |
| MsG0180005854.01.T03 | XP_003592549.1 | 98.056 | 463 | 6 | 1 | 1 | 463 | 1 | 460 | 0 | 921 |
| MsG0180005854.01.T02 | TKY69322.1 | 74.146 | 410 | 59 | 2 | 1 | 366 | 42 | 448 | 0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005854.01.T01 | Q9C999 | 68.636 | 440 | 135 | 2 | 1 | 438 | 9 | 447 | 0 | 603 |
| MsG0180005854.01.T02 | Q9C999 | 64.373 | 407 | 98 | 2 | 2 | 362 | 42 | 447 | 8.25E-179 | 507 |
| MsG0180005854.01.T03 | Q9C999 | 67.035 | 452 | 140 | 2 | 8 | 459 | 5 | 447 | 0 | 606 |
| MsG0180005854.01.T04 | Q9C999 | 67.634 | 448 | 136 | 2 | 1 | 448 | 9 | 447 | 0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005854.01.T02 | G7IAS9 | 83.333 | 420 | 13 | 3 | 1 | 366 | 44 | 460 | 0.0 | 673 |
| MsG0180005854.01.T03 | G7IAS9 | 98.056 | 463 | 6 | 1 | 1 | 463 | 1 | 460 | 0.0 | 921 |
| MsG0180005854.01.T04 | G7IAS9 | 98.009 | 452 | 6 | 1 | 1 | 452 | 12 | 460 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048969.01 | MsG0180005854.01 | 0.805719 | 1.165215e-49 | 6.209722e-47 |
| MsG0180000017.01 | MsG0180005854.01 | 0.834918 | 2.269938e-56 | 2.732872e-53 |
| MsG0180000040.01 | MsG0180005854.01 | 0.805464 | 1.318529e-49 | 6.980517e-47 |
| MsG0180000489.01 | MsG0180005854.01 | 0.833033 | 6.727873e-56 | 7.655012e-53 |
| MsG0180000490.01 | MsG0180005854.01 | 0.851068 | 1.128818e-60 | 2.257310e-57 |
| MsG0180000491.01 | MsG0180005854.01 | 0.853638 | 2.093545e-61 | 4.553684e-58 |
| MsG0180000843.01 | MsG0180005854.01 | 0.800140 | 1.657529e-48 | 7.659767e-46 |
| MsG0180002891.01 | MsG0180005854.01 | 0.852505 | 4.418372e-61 | 9.252269e-58 |
| MsG0180003352.01 | MsG0180005854.01 | 0.823085 | 1.674305e-53 | 1.427435e-50 |
| MsG0180004662.01 | MsG0180005854.01 | 0.816391 | 5.664172e-52 | 4.008465e-49 |
| MsG0180004687.01 | MsG0180005854.01 | 0.802935 | 4.430941e-49 | 2.198072e-46 |
| MsG0180004860.01 | MsG0180005854.01 | 0.819551 | 1.094399e-52 | 8.448221e-50 |
| MsG0180005416.01 | MsG0180005854.01 | 0.822728 | 2.028037e-53 | 1.711625e-50 |
| MsG0180005557.01 | MsG0180005854.01 | 0.815195 | 1.046925e-51 | 7.169687e-49 |
| MsG0180005558.01 | MsG0180005854.01 | 0.808845 | 2.535494e-50 | 1.465208e-47 |
| MsG0180005803.01 | MsG0180005854.01 | 0.805571 | 1.251769e-49 | 6.645082e-47 |
| MsG0180005854.01 | MsG0180005991.01 | 0.808151 | 3.564989e-50 | 2.023143e-47 |
| MsG0180005854.01 | MsG0280007511.01 | 0.834775 | 2.465810e-56 | 2.955628e-53 |
| MsG0180005854.01 | MsG0280008309.01 | 0.808835 | 2.547733e-50 | 1.471880e-47 |
| MsG0180005854.01 | MsG0280008531.01 | 0.813966 | 1.958722e-51 | 1.297572e-48 |
| MsG0180005854.01 | MsG0280009287.01 | 0.802520 | 5.396047e-49 | 2.648664e-46 |
| MsG0180005854.01 | MsG0280009434.01 | 0.816395 | 5.654713e-52 | 4.002100e-49 |
| MsG0180005854.01 | MsG0280010455.01 | 0.804541 | 2.055474e-49 | 1.062611e-46 |
| MsG0180005854.01 | MsG0280010523.01 | 0.814837 | 1.256774e-51 | 8.524131e-49 |
| MsG0180005854.01 | MsG0280010584.01 | 0.806169 | 9.371059e-50 | 5.051824e-47 |
| MsG0180005854.01 | MsG0280011169.01 | 0.856206 | 3.762731e-62 | 8.911553e-59 |
| MsG0180005854.01 | MsG0280011207.01 | 0.837016 | 6.665317e-57 | 8.547461e-54 |
| MsG0180005854.01 | MsG0380011662.01 | 0.807922 | 3.988474e-50 | 2.249656e-47 |
| MsG0180005854.01 | MsG0380012251.01 | 0.800956 | 1.129912e-48 | 5.331018e-46 |
| MsG0180005854.01 | MsG0380012931.01 | 0.805670 | 1.193481e-49 | 6.351970e-47 |
| MsG0180005854.01 | MsG0380013177.01 | 0.812349 | 4.433720e-51 | 2.812403e-48 |
| MsG0180005854.01 | MsG0380014144.01 | 0.852596 | 4.160485e-61 | 8.737433e-58 |
| MsG0180005854.01 | MsG0380016066.01 | 0.811950 | 5.417456e-51 | 3.399311e-48 |
| MsG0180005854.01 | MsG0380016151.01 | 0.859956 | 2.888967e-63 | 7.767479e-60 |
| MsG0180005854.01 | MsG0380016167.01 | 0.806711 | 7.203603e-50 | 3.937276e-47 |
| MsG0180005854.01 | MsG0380016936.01 | 0.808450 | 3.079176e-50 | 1.761229e-47 |
| MsG0180005854.01 | MsG0380016997.01 | 0.829151 | 6.043219e-55 | 6.133161e-52 |
| MsG0180005854.01 | MsG0380017056.01 | 0.827759 | 1.310160e-54 | 1.276628e-51 |
| MsG0180005854.01 | MsG0380017353.01 | 0.861906 | 7.377843e-64 | 2.120509e-60 |
| MsG0180005854.01 | MsG0380017532.01 | 0.817690 | 2.893897e-52 | 2.122055e-49 |
| MsG0180005854.01 | MsG0480018232.01 | 0.824715 | 6.947276e-54 | 6.203697e-51 |
| MsG0180005854.01 | MsG0480019693.01 | 0.821629 | 3.647583e-53 | 2.983350e-50 |
| MsG0180005854.01 | MsG0480019974.01 | 0.830656 | 2.597048e-55 | 2.753759e-52 |
| MsG0180005854.01 | MsG0480020473.01 | 0.800786 | 1.223700e-48 | 5.748213e-46 |
| MsG0180005854.01 | MsG0480020704.01 | 0.816648 | 4.963002e-52 | 3.536976e-49 |
| MsG0180005854.01 | MsG0480021892.01 | 0.835748 | 1.400703e-56 | 1.728887e-53 |
| MsG0180005854.01 | MsG0480021999.01 | 0.861744 | 8.271143e-64 | 2.364194e-60 |
| MsG0180005854.01 | MsG0480022002.01 | 0.818346 | 2.056933e-52 | 1.535873e-49 |
| MsG0180005854.01 | MsG0480022617.01 | 0.801689 | 7.998260e-49 | 3.843815e-46 |
| MsG0180005854.01 | MsG0480022664.01 | 0.816420 | 5.581531e-52 | 3.952899e-49 |
| MsG0180005854.01 | MsG0480022805.01 | 0.823518 | 1.326953e-53 | 1.145144e-50 |
| MsG0180005854.01 | MsG0480023616.01 | 0.821830 | 3.278058e-53 | 2.696614e-50 |
| MsG0180005854.01 | MsG0580024201.01 | 0.801085 | 1.063426e-48 | 5.033770e-46 |
| MsG0180005854.01 | MsG0580024386.01 | 0.844280 | 8.336728e-59 | 1.339226e-55 |
| MsG0180005854.01 | MsG0580024404.01 | 0.822770 | 1.982713e-53 | 1.675381e-50 |
| MsG0180005854.01 | MsG0580024471.01 | 0.813219 | 2.859765e-51 | 1.856294e-48 |
| MsG0180005854.01 | MsG0580024681.01 | 0.808176 | 3.522345e-50 | 2.000264e-47 |
| MsG0180005854.01 | MsG0580024763.01 | 0.836059 | 1.168152e-56 | 1.455442e-53 |
| MsG0180005854.01 | MsG0580024764.01 | 0.823056 | 1.701166e-53 | 1.449133e-50 |
| MsG0180005854.01 | MsG0580024766.01 | 0.852657 | 3.996800e-61 | 8.410984e-58 |
| MsG0180005854.01 | MsG0580024768.01 | 0.805009 | 1.641412e-49 | 8.588707e-47 |
| MsG0180005854.01 | MsG0580024820.01 | 0.803892 | 2.805656e-49 | 1.426555e-46 |
| MsG0180005854.01 | MsG0580025301.01 | 0.813408 | 2.598399e-51 | 1.695550e-48 |
| MsG0180005854.01 | MsG0580026050.01 | 0.828120 | 1.072410e-54 | 1.056157e-51 |
| MsG0180005854.01 | MsG0580027082.01 | 0.800471 | 1.418836e-48 | 6.611911e-46 |
| MsG0180005854.01 | MsG0580027236.01 | 0.802682 | 4.996569e-49 | 2.462797e-46 |
| MsG0180005854.01 | MsG0580027761.01 | 0.801810 | 7.552832e-49 | 3.641117e-46 |
| MsG0180005854.01 | MsG0580028013.01 | 0.812012 | 5.252413e-51 | 3.301229e-48 |
| MsG0180005854.01 | MsG0580028397.01 | 0.826246 | 3.013579e-54 | 2.810847e-51 |
| MsG0180005854.01 | MsG0580028398.01 | 0.800835 | 1.195919e-48 | 5.624992e-46 |
| MsG0180005854.01 | MsG0580028403.01 | 0.808136 | 3.592473e-50 | 2.037847e-47 |
| MsG0180005854.01 | MsG0580028925.01 | 0.804832 | 1.787964e-49 | 9.313437e-47 |
| MsG0180005854.01 | MsG0580029276.01 | 0.818771 | 1.646810e-52 | 1.244127e-49 |
| MsG0180005854.01 | MsG0580030063.01 | 0.845017 | 5.278902e-59 | 8.679656e-56 |
| MsG0180005854.01 | MsG0680030902.01 | 0.824139 | 9.491743e-54 | 8.336065e-51 |
| MsG0180005854.01 | MsG0680031997.01 | 0.813604 | 2.353332e-51 | 1.543782e-48 |
| MsG0180005854.01 | MsG0680032000.01 | 0.802988 | 4.319071e-49 | 2.145466e-46 |
| MsG0180005854.01 | MsG0680032002.01 | 0.808860 | 2.516547e-50 | 1.454855e-47 |
| MsG0180005854.01 | MsG0680032003.01 | 0.825156 | 5.465095e-54 | 4.941941e-51 |
| MsG0180005854.01 | MsG0680032769.01 | 0.814836 | 1.257884e-51 | 8.531170e-49 |
| MsG0180005854.01 | MsG0680034724.01 | 0.808036 | 3.772604e-50 | 2.134318e-47 |
| MsG0180005854.01 | MsG0680035612.01 | 0.832011 | 1.205529e-55 | 1.330636e-52 |
| MsG0180005854.01 | MsG0680035664.01 | 0.833683 | 4.633300e-56 | 5.374786e-53 |
| MsG0180005854.01 | MsG0680035665.01 | 0.851150 | 1.070553e-60 | 2.146642e-57 |
| MsG0180005854.01 | MsG0780036584.01 | 0.826522 | 2.589974e-54 | 2.434645e-51 |
| MsG0180005854.01 | MsG0780036846.01 | 0.834779 | 2.460782e-56 | 2.949834e-53 |
| MsG0180005854.01 | MsG0780039256.01 | 0.807560 | 4.762538e-50 | 2.660975e-47 |
| MsG0180005854.01 | MsG0780039795.01 | 0.805066 | 1.597334e-49 | 8.370462e-47 |
| MsG0180005854.01 | MsG0780039805.01 | 0.839986 | 1.140903e-57 | 1.602697e-54 |
| MsG0180005854.01 | MsG0780039986.01 | 0.810082 | 1.375473e-50 | 8.213949e-48 |
| MsG0180005854.01 | MsG0780040154.01 | 0.820846 | 5.528796e-53 | 4.424585e-50 |
| MsG0180005854.01 | MsG0780040155.01 | 0.826612 | 2.465475e-54 | 2.323624e-51 |
| MsG0180005854.01 | MsG0780040319.01 | 0.806941 | 6.441886e-50 | 3.541963e-47 |
| MsG0180005854.01 | MsG0880041850.01 | 0.805035 | 1.621026e-49 | 8.487735e-47 |
| MsG0180005854.01 | MsG0880042030.01 | 0.806951 | 6.411121e-50 | 3.525917e-47 |
| MsG0180005854.01 | MsG0880042256.01 | 0.811865 | 5.652079e-51 | 3.538392e-48 |
| MsG0180005854.01 | MsG0880042343.01 | 0.832012 | 1.204854e-55 | 1.329925e-52 |
| MsG0180005854.01 | MsG0880043235.01 | 0.800879 | 1.171336e-48 | 5.515745e-46 |
| MsG0180005854.01 | MsG0880044105.01 | 0.828454 | 8.909510e-55 | 8.860157e-52 |
| MsG0180005854.01 | MsG0880044317.01 | 0.806980 | 6.318846e-50 | 3.477884e-47 |
| MsG0180005854.01 | MsG0880044318.01 | 0.815053 | 1.125721e-51 | 7.679661e-49 |
| MsG0180005854.01 | MsG0880044410.01 | 0.808293 | 3.326386e-50 | 1.894726e-47 |
| MsG0180005854.01 | MsG0880044435.01 | 0.832572 | 8.756640e-56 | 9.826700e-53 |
| MsG0180005854.01 | MsG0880044453.01 | 0.805088 | 1.579957e-49 | 8.284111e-47 |
| MsG0180005854.01 | MsG0880044636.01 | 0.817534 | 3.137984e-52 | 2.291200e-49 |
| MsG0180005854.01 | MsG0880045377.01 | 0.802417 | 5.665201e-49 | 2.773768e-46 |
| MsG0180005854.01 | MsG0880045378.01 | 0.827501 | 1.510610e-54 | 1.461042e-51 |
| MsG0180005854.01 | MsG0880045409.01 | 0.806305 | 8.773866e-50 | 4.746090e-47 |
| MsG0180005854.01 | MsG0880045923.01 | 0.817080 | 3.968511e-52 | 2.861922e-49 |
| MsG0180005854.01 | MsG0880046048.01 | 0.840733 | 7.280306e-58 | 1.046574e-54 |
| MsG0180005854.01 | MsG0880046160.01 | 0.849989 | 2.268721e-60 | 4.379070e-57 |
| MsG0180005854.01 | MsG0880046281.01 | 0.800221 | 1.595750e-48 | 7.389363e-46 |
| MsG0180005854.01 | MsG0880046324.01 | 0.832231 | 1.063707e-55 | 1.181589e-52 |
| MsG0180005854.01 | MsG0880046968.01 | 0.801460 | 8.912426e-49 | 4.258559e-46 |
| MsG0180005854.01 | MsG0880046969.01 | 0.828750 | 7.558674e-55 | 7.580747e-52 |
| MsG0180005854.01 | MsG0880047111.01 | 0.808359 | 3.219660e-50 | 1.837218e-47 |
| MsG0180005854.01 | MsG0880047112.01 | 0.829592 | 4.722087e-55 | 4.854928e-52 |
| MsG0180005854.01 | MsG0880047207.01 | 0.801179 | 1.017343e-48 | 4.826866e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005854.01.T01 | MTR_1g108390 | 95.796 | 452 | 6 | 2 | 1 | 442 | 12 | 460 | 0.0 | 868 |
| MsG0180005854.01.T01 | MTR_5g054950 | 77.079 | 445 | 98 | 2 | 1 | 442 | 10 | 453 | 0.0 | 697 |
| MsG0180005854.01.T01 | MTR_7g074190 | 40.136 | 441 | 222 | 5 | 2 | 439 | 20 | 421 | 3.70e-109 | 329 |
| MsG0180005854.01.T01 | MTR_5g024970 | 28.810 | 420 | 273 | 6 | 14 | 431 | 13 | 408 | 2.30e-58 | 197 |
| MsG0180005854.01.T01 | MTR_5g024660 | 28.337 | 427 | 281 | 8 | 8 | 431 | 7 | 411 | 6.26e-56 | 191 |
| MsG0180005854.01.T01 | MTR_8g072560 | 29.551 | 423 | 253 | 9 | 14 | 431 | 13 | 395 | 8.32e-54 | 185 |
| MsG0180005854.01.T01 | MTR_5g024640 | 27.460 | 437 | 292 | 8 | 8 | 441 | 7 | 421 | 3.99e-53 | 184 |
| MsG0180005854.01.T01 | MTR_5g024970 | 27.069 | 447 | 273 | 7 | 14 | 431 | 13 | 435 | 7.80e-53 | 183 |
| MsG0180005854.01.T01 | MTR_5g024970 | 28.792 | 389 | 251 | 6 | 14 | 400 | 13 | 377 | 7.25e-52 | 179 |
| MsG0180005854.01.T01 | MTR_5g024640 | 28.244 | 393 | 257 | 8 | 8 | 397 | 7 | 377 | 1.13e-48 | 171 |
| MsG0180005854.01.T01 | MTR_5g024970 | 27.500 | 360 | 235 | 6 | 74 | 431 | 9 | 344 | 1.92e-47 | 167 |
| MsG0180005854.01.T01 | MTR_8g073160 | 26.047 | 430 | 250 | 10 | 6 | 431 | 5 | 370 | 3.27e-46 | 164 |
| MsG0180005854.01.T01 | MTR_8g006775 | 25.508 | 443 | 279 | 7 | 11 | 439 | 10 | 415 | 8.01e-45 | 161 |
| MsG0180005854.01.T01 | MTR_8g006780 | 29.009 | 424 | 266 | 8 | 11 | 431 | 10 | 401 | 1.18e-42 | 155 |
| MsG0180005854.01.T01 | MTR_5g024970 | 26.380 | 326 | 215 | 5 | 14 | 337 | 13 | 315 | 1.82e-38 | 142 |
| MsG0180005854.01.T01 | MTR_5g024970 | 25.649 | 308 | 204 | 5 | 14 | 319 | 13 | 297 | 2.32e-33 | 128 |
| MsG0180005854.01.T01 | MTR_5g024640 | 25.079 | 315 | 212 | 7 | 8 | 319 | 7 | 300 | 4.32e-30 | 119 |
| MsG0180005854.01.T01 | MTR_5g024520 | 22.248 | 427 | 241 | 8 | 8 | 431 | 7 | 345 | 1.40e-29 | 118 |
| MsG0180005854.01.T01 | MTR_5g024970 | 35.669 | 157 | 99 | 1 | 14 | 168 | 13 | 169 | 7.77e-27 | 108 |
| MsG0180005854.01.T01 | MTR_5g024970 | 35.669 | 157 | 99 | 1 | 14 | 168 | 13 | 169 | 1.69e-26 | 108 |
| MsG0180005854.01.T01 | MTR_5g024560 | 24.912 | 285 | 192 | 5 | 157 | 441 | 38 | 300 | 1.58e-23 | 100 |
| MsG0180005854.01.T01 | MTR_8g006780 | 35.135 | 148 | 93 | 2 | 11 | 155 | 10 | 157 | 1.68e-19 | 89.7 |
| MsG0180005854.01.T01 | MTR_8g006780 | 30.348 | 201 | 135 | 2 | 235 | 431 | 132 | 331 | 1.59e-13 | 72.0 |
| MsG0180005854.01.T01 | MTR_5g024580 | 28.750 | 160 | 111 | 2 | 8 | 164 | 7 | 166 | 3.40e-19 | 85.1 |
| MsG0180005854.01.T01 | MTR_5g024960 | 41.176 | 85 | 49 | 1 | 347 | 431 | 62 | 145 | 2.26e-11 | 62.4 |
| MsG0180005854.01.T04 | MTR_1g108390 | 98.009 | 452 | 6 | 1 | 1 | 452 | 12 | 460 | 0.0 | 895 |
| MsG0180005854.01.T04 | MTR_5g054950 | 77.434 | 452 | 94 | 2 | 1 | 452 | 10 | 453 | 0.0 | 700 |
| MsG0180005854.01.T04 | MTR_7g074190 | 39.246 | 451 | 222 | 5 | 2 | 449 | 20 | 421 | 2.37e-107 | 325 |
| MsG0180005854.01.T04 | MTR_5g024970 | 28.140 | 430 | 273 | 6 | 14 | 441 | 13 | 408 | 1.39e-56 | 193 |
| MsG0180005854.01.T04 | MTR_5g024660 | 28.864 | 440 | 272 | 10 | 8 | 441 | 7 | 411 | 4.61e-55 | 189 |
| MsG0180005854.01.T04 | MTR_8g072560 | 28.868 | 433 | 253 | 9 | 14 | 441 | 13 | 395 | 7.57e-54 | 185 |
| MsG0180005854.01.T04 | MTR_5g024640 | 27.517 | 447 | 289 | 9 | 8 | 451 | 7 | 421 | 2.28e-52 | 182 |
| MsG0180005854.01.T04 | MTR_5g024970 | 26.477 | 457 | 273 | 7 | 14 | 441 | 13 | 435 | 3.40e-51 | 179 |
| MsG0180005854.01.T04 | MTR_5g024970 | 28.070 | 399 | 251 | 6 | 14 | 410 | 13 | 377 | 2.86e-50 | 175 |
| MsG0180005854.01.T04 | MTR_5g024640 | 28.288 | 403 | 254 | 9 | 8 | 407 | 7 | 377 | 7.01e-48 | 169 |
| MsG0180005854.01.T04 | MTR_5g024970 | 26.757 | 370 | 235 | 6 | 74 | 441 | 9 | 344 | 6.98e-46 | 163 |
| MsG0180005854.01.T04 | MTR_8g006775 | 25.508 | 443 | 289 | 7 | 11 | 449 | 10 | 415 | 9.20e-45 | 161 |
| MsG0180005854.01.T04 | MTR_8g073160 | 26.185 | 443 | 249 | 11 | 3 | 441 | 2 | 370 | 1.97e-44 | 159 |
| MsG0180005854.01.T04 | MTR_8g006780 | 28.341 | 434 | 266 | 8 | 11 | 441 | 10 | 401 | 4.66e-41 | 151 |
| MsG0180005854.01.T04 | MTR_5g024970 | 25.595 | 336 | 215 | 5 | 14 | 347 | 13 | 315 | 4.78e-37 | 138 |
| MsG0180005854.01.T04 | MTR_5g024970 | 24.843 | 318 | 204 | 5 | 14 | 329 | 13 | 297 | 9.42e-32 | 124 |
| MsG0180005854.01.T04 | MTR_5g024640 | 25.231 | 325 | 209 | 8 | 8 | 329 | 7 | 300 | 2.16e-29 | 117 |
| MsG0180005854.01.T04 | MTR_5g024970 | 35.669 | 157 | 99 | 1 | 14 | 168 | 13 | 169 | 9.22e-27 | 108 |
| MsG0180005854.01.T04 | MTR_5g024970 | 35.669 | 157 | 99 | 1 | 14 | 168 | 13 | 169 | 1.87e-26 | 108 |
| MsG0180005854.01.T04 | MTR_5g024560 | 25.085 | 295 | 189 | 6 | 157 | 451 | 38 | 300 | 5.79e-23 | 99.0 |
| MsG0180005854.01.T04 | MTR_8g006780 | 35.135 | 148 | 93 | 2 | 11 | 155 | 10 | 157 | 1.82e-19 | 89.7 |
| MsG0180005854.01.T04 | MTR_8g006780 | 29.952 | 207 | 140 | 2 | 239 | 441 | 126 | 331 | 1.72e-13 | 71.6 |
| MsG0180005854.01.T04 | MTR_5g024580 | 28.750 | 160 | 111 | 2 | 8 | 164 | 7 | 166 | 4.37e-19 | 84.7 |
| MsG0180005854.01.T04 | MTR_5g024520 | 35.915 | 142 | 90 | 1 | 300 | 441 | 205 | 345 | 9.16e-19 | 87.8 |
| MsG0180005854.01.T04 | MTR_5g024520 | 21.860 | 215 | 133 | 5 | 8 | 219 | 7 | 189 | 8.45e-11 | 63.5 |
| MsG0180005854.01.T04 | MTR_5g024960 | 41.176 | 85 | 49 | 1 | 357 | 441 | 62 | 145 | 2.49e-11 | 62.0 |
| MsG0180005854.01.T03 | MTR_1g108390 | 98.056 | 463 | 6 | 1 | 1 | 463 | 1 | 460 | 0.0 | 921 |
| MsG0180005854.01.T03 | MTR_5g054950 | 76.242 | 463 | 100 | 3 | 1 | 463 | 1 | 453 | 0.0 | 701 |
| MsG0180005854.01.T03 | MTR_7g074190 | 38.745 | 462 | 231 | 5 | 2 | 460 | 9 | 421 | 3.54e-107 | 324 |
| MsG0180005854.01.T03 | MTR_5g024970 | 28.140 | 430 | 273 | 6 | 25 | 452 | 13 | 408 | 1.89e-56 | 193 |
| MsG0180005854.01.T03 | MTR_5g024660 | 28.864 | 440 | 272 | 10 | 19 | 452 | 7 | 411 | 6.39e-55 | 189 |
| MsG0180005854.01.T03 | MTR_8g072560 | 28.868 | 433 | 253 | 9 | 25 | 452 | 13 | 395 | 1.08e-53 | 185 |
| MsG0180005854.01.T03 | MTR_5g024640 | 27.517 | 447 | 289 | 9 | 19 | 462 | 7 | 421 | 3.78e-52 | 181 |
| MsG0180005854.01.T03 | MTR_5g024970 | 26.477 | 457 | 273 | 7 | 25 | 452 | 13 | 435 | 4.61e-51 | 179 |
| MsG0180005854.01.T03 | MTR_5g024970 | 28.070 | 399 | 251 | 6 | 25 | 421 | 13 | 377 | 3.85e-50 | 175 |
| MsG0180005854.01.T03 | MTR_5g024640 | 28.288 | 403 | 254 | 9 | 19 | 418 | 7 | 377 | 6.71e-48 | 169 |
| MsG0180005854.01.T03 | MTR_5g024970 | 26.757 | 370 | 235 | 6 | 85 | 452 | 9 | 344 | 1.17e-45 | 162 |
| MsG0180005854.01.T03 | MTR_8g006775 | 25.508 | 443 | 289 | 7 | 22 | 460 | 10 | 415 | 9.78e-45 | 161 |
| MsG0180005854.01.T03 | MTR_8g073160 | 26.185 | 443 | 249 | 11 | 14 | 452 | 2 | 370 | 3.06e-44 | 159 |
| MsG0180005854.01.T03 | MTR_8g006780 | 28.341 | 434 | 266 | 8 | 22 | 452 | 10 | 401 | 6.82e-41 | 151 |
| MsG0180005854.01.T03 | MTR_5g024970 | 25.595 | 336 | 215 | 5 | 25 | 358 | 13 | 315 | 7.57e-37 | 138 |
| MsG0180005854.01.T03 | MTR_5g024970 | 24.843 | 318 | 204 | 5 | 25 | 340 | 13 | 297 | 1.14e-31 | 124 |
| MsG0180005854.01.T03 | MTR_5g024640 | 25.231 | 325 | 209 | 8 | 19 | 340 | 7 | 300 | 2.04e-29 | 117 |
| MsG0180005854.01.T03 | MTR_5g024970 | 35.669 | 157 | 99 | 1 | 25 | 179 | 13 | 169 | 8.56e-27 | 108 |
| MsG0180005854.01.T03 | MTR_5g024970 | 35.669 | 157 | 99 | 1 | 25 | 179 | 13 | 169 | 1.82e-26 | 108 |
| MsG0180005854.01.T03 | MTR_5g024560 | 25.085 | 295 | 189 | 6 | 168 | 462 | 38 | 300 | 5.17e-23 | 99.4 |
| MsG0180005854.01.T03 | MTR_8g006780 | 35.135 | 148 | 93 | 2 | 22 | 166 | 10 | 157 | 2.28e-19 | 89.4 |
| MsG0180005854.01.T03 | MTR_8g006780 | 29.952 | 207 | 140 | 2 | 250 | 452 | 126 | 331 | 2.20e-13 | 71.6 |
| MsG0180005854.01.T03 | MTR_5g024580 | 28.750 | 160 | 111 | 2 | 19 | 175 | 7 | 166 | 5.39e-19 | 84.7 |
| MsG0180005854.01.T03 | MTR_5g024520 | 35.915 | 142 | 90 | 1 | 311 | 452 | 205 | 345 | 8.94e-19 | 87.8 |
| MsG0180005854.01.T03 | MTR_5g024960 | 41.176 | 85 | 49 | 1 | 368 | 452 | 62 | 145 | 2.67e-12 | 65.1 |
| MsG0180005854.01.T02 | MTR_1g108390 | 83.333 | 420 | 13 | 3 | 1 | 366 | 44 | 460 | 0.0 | 673 |
| MsG0180005854.01.T02 | MTR_5g054950 | 71.845 | 412 | 70 | 1 | 1 | 366 | 42 | 453 | 0.0 | 592 |
| MsG0180005854.01.T02 | MTR_7g074190 | 45.161 | 372 | 194 | 4 | 1 | 363 | 51 | 421 | 2.81e-107 | 321 |
| MsG0180005854.01.T02 | MTR_5g024660 | 30.645 | 372 | 230 | 6 | 10 | 355 | 42 | 411 | 5.90e-56 | 189 |
| MsG0180005854.01.T02 | MTR_5g024970 | 30.263 | 380 | 237 | 6 | 1 | 355 | 32 | 408 | 3.46e-54 | 184 |
| MsG0180005854.01.T02 | MTR_8g072560 | 32.222 | 360 | 225 | 7 | 10 | 355 | 41 | 395 | 1.66e-53 | 182 |
| MsG0180005854.01.T02 | MTR_5g024640 | 29.581 | 382 | 241 | 6 | 10 | 365 | 42 | 421 | 2.54e-53 | 182 |
| MsG0180005854.01.T02 | MTR_5g024640 | 30.769 | 338 | 206 | 6 | 10 | 321 | 42 | 377 | 6.44e-49 | 169 |
| MsG0180005854.01.T02 | MTR_5g024970 | 28.256 | 407 | 237 | 7 | 1 | 355 | 32 | 435 | 6.58e-49 | 171 |
| MsG0180005854.01.T02 | MTR_5g024970 | 30.088 | 339 | 209 | 6 | 42 | 355 | 9 | 344 | 1.40e-48 | 167 |
| MsG0180005854.01.T02 | MTR_5g024970 | 30.372 | 349 | 215 | 6 | 1 | 324 | 32 | 377 | 6.43e-48 | 166 |
| MsG0180005854.01.T02 | MTR_8g073160 | 27.747 | 364 | 210 | 8 | 10 | 355 | 42 | 370 | 5.38e-45 | 159 |
| MsG0180005854.01.T02 | MTR_8g006775 | 26.893 | 383 | 251 | 6 | 3 | 360 | 34 | 412 | 6.30e-40 | 146 |
| MsG0180005854.01.T02 | MTR_8g006780 | 31.233 | 365 | 227 | 6 | 10 | 355 | 42 | 401 | 2.35e-35 | 134 |
| MsG0180005854.01.T02 | MTR_5g024520 | 26.724 | 348 | 209 | 6 | 10 | 355 | 42 | 345 | 6.16e-35 | 131 |
| MsG0180005854.01.T02 | MTR_5g024970 | 27.972 | 286 | 179 | 5 | 1 | 261 | 32 | 315 | 1.62e-34 | 129 |
| MsG0180005854.01.T02 | MTR_5g024640 | 27.692 | 260 | 161 | 5 | 10 | 243 | 42 | 300 | 4.62e-30 | 117 |
| MsG0180005854.01.T02 | MTR_5g024970 | 27.239 | 268 | 168 | 5 | 1 | 243 | 32 | 297 | 2.83e-29 | 115 |
| MsG0180005854.01.T02 | MTR_8g006780 | 29.023 | 348 | 187 | 5 | 10 | 355 | 42 | 331 | 5.69e-26 | 107 |
| MsG0180005854.01.T02 | MTR_5g024560 | 27.826 | 230 | 141 | 4 | 138 | 365 | 94 | 300 | 4.29e-24 | 100 |
| MsG0180005854.01.T02 | MTR_5g024970 | 29.885 | 174 | 118 | 2 | 1 | 172 | 32 | 203 | 6.98e-22 | 94.0 |
| MsG0180005854.01.T02 | MTR_5g024970 | 29.885 | 174 | 118 | 2 | 1 | 172 | 32 | 203 | 1.23e-21 | 93.6 |
| MsG0180005854.01.T02 | MTR_5g024580 | 32.800 | 125 | 82 | 1 | 10 | 132 | 42 | 166 | 2.54e-18 | 82.0 |
| MsG0180005854.01.T02 | MTR_5g024960 | 41.176 | 85 | 49 | 1 | 271 | 355 | 62 | 145 | 2.71e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005854.01.T01 | AT1G71090 | 68.636 | 440 | 135 | 2 | 1 | 438 | 9 | 447 | 0.0 | 603 |
| MsG0180005854.01.T01 | AT5G01990 | 40.230 | 435 | 225 | 8 | 8 | 439 | 28 | 430 | 2.00e-109 | 330 |
| MsG0180005854.01.T01 | AT1G76520 | 30.425 | 424 | 241 | 8 | 10 | 431 | 10 | 381 | 2.36e-62 | 207 |
| MsG0180005854.01.T01 | AT1G76520 | 30.425 | 424 | 241 | 8 | 10 | 431 | 10 | 381 | 2.36e-62 | 207 |
| MsG0180005854.01.T01 | AT2G17500 | 28.182 | 440 | 257 | 7 | 8 | 439 | 7 | 395 | 6.30e-62 | 206 |
| MsG0180005854.01.T01 | AT2G17500 | 28.182 | 440 | 257 | 7 | 8 | 439 | 7 | 395 | 6.30e-62 | 206 |
| MsG0180005854.01.T01 | AT2G17500 | 28.182 | 440 | 257 | 7 | 8 | 439 | 7 | 395 | 6.30e-62 | 206 |
| MsG0180005854.01.T01 | AT2G17500 | 28.182 | 440 | 257 | 7 | 8 | 439 | 7 | 395 | 6.30e-62 | 206 |
| MsG0180005854.01.T01 | AT1G20925 | 30.660 | 424 | 235 | 7 | 10 | 431 | 97 | 463 | 8.81e-57 | 194 |
| MsG0180005854.01.T01 | AT5G65980 | 26.077 | 441 | 270 | 7 | 6 | 440 | 5 | 395 | 8.78e-55 | 187 |
| MsG0180005854.01.T01 | AT5G65980 | 26.633 | 398 | 236 | 7 | 6 | 397 | 5 | 352 | 9.70e-49 | 171 |
| MsG0180005854.01.T01 | AT1G76530 | 30.023 | 433 | 251 | 7 | 13 | 431 | 12 | 406 | 1.87e-41 | 152 |
| MsG0180005854.01.T01 | AT1G76530 | 30.023 | 433 | 251 | 7 | 13 | 431 | 12 | 406 | 1.87e-41 | 152 |
| MsG0180005854.01.T01 | AT1G76530 | 35.333 | 150 | 95 | 1 | 13 | 160 | 12 | 161 | 1.82e-21 | 95.5 |
| MsG0180005854.01.T04 | AT1G71090 | 67.634 | 448 | 136 | 2 | 1 | 448 | 9 | 447 | 0.0 | 605 |
| MsG0180005854.01.T04 | AT5G01990 | 39.775 | 445 | 223 | 9 | 8 | 449 | 28 | 430 | 6.02e-108 | 326 |
| MsG0180005854.01.T04 | AT1G76520 | 29.724 | 434 | 241 | 9 | 10 | 441 | 10 | 381 | 1.71e-59 | 200 |
| MsG0180005854.01.T04 | AT1G76520 | 29.724 | 434 | 241 | 9 | 10 | 441 | 10 | 381 | 1.71e-59 | 200 |
| MsG0180005854.01.T04 | AT2G17500 | 26.682 | 446 | 266 | 5 | 8 | 449 | 7 | 395 | 2.87e-56 | 191 |
| MsG0180005854.01.T04 | AT2G17500 | 26.682 | 446 | 266 | 5 | 8 | 449 | 7 | 395 | 2.87e-56 | 191 |
| MsG0180005854.01.T04 | AT2G17500 | 26.682 | 446 | 266 | 5 | 8 | 449 | 7 | 395 | 2.87e-56 | 191 |
| MsG0180005854.01.T04 | AT2G17500 | 26.682 | 446 | 266 | 5 | 8 | 449 | 7 | 395 | 2.87e-56 | 191 |
| MsG0180005854.01.T04 | AT5G65980 | 25.721 | 451 | 269 | 7 | 6 | 450 | 5 | 395 | 2.88e-54 | 186 |
| MsG0180005854.01.T04 | AT5G65980 | 26.225 | 408 | 235 | 7 | 6 | 407 | 5 | 352 | 2.68e-48 | 169 |
| MsG0180005854.01.T04 | AT1G20925 | 37.209 | 172 | 107 | 1 | 270 | 441 | 293 | 463 | 4.18e-28 | 116 |
| MsG0180005854.01.T04 | AT1G20925 | 33.540 | 161 | 105 | 1 | 10 | 168 | 97 | 257 | 1.31e-24 | 106 |
| MsG0180005854.01.T04 | AT1G76530 | 35.333 | 150 | 95 | 1 | 13 | 160 | 12 | 161 | 2.24e-21 | 95.1 |
| MsG0180005854.01.T04 | AT1G76530 | 35.333 | 150 | 95 | 1 | 13 | 160 | 12 | 161 | 3.77e-21 | 95.5 |
| MsG0180005854.01.T04 | AT1G76530 | 36.242 | 149 | 89 | 2 | 298 | 441 | 259 | 406 | 3.44e-17 | 84.0 |
| MsG0180005854.01.T04 | AT1G76530 | 35.333 | 150 | 95 | 1 | 13 | 160 | 12 | 161 | 3.77e-21 | 95.5 |
| MsG0180005854.01.T04 | AT1G76530 | 36.242 | 149 | 89 | 2 | 298 | 441 | 259 | 406 | 3.44e-17 | 84.0 |
| MsG0180005854.01.T03 | AT1G71090 | 67.035 | 452 | 140 | 2 | 8 | 459 | 5 | 447 | 0.0 | 606 |
| MsG0180005854.01.T03 | AT5G01990 | 39.775 | 445 | 223 | 9 | 19 | 460 | 28 | 430 | 5.30e-108 | 327 |
| MsG0180005854.01.T03 | AT1G76520 | 29.724 | 434 | 241 | 9 | 21 | 452 | 10 | 381 | 1.75e-59 | 200 |
| MsG0180005854.01.T03 | AT1G76520 | 29.724 | 434 | 241 | 9 | 21 | 452 | 10 | 381 | 1.75e-59 | 200 |
| MsG0180005854.01.T03 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 4.97e-56 | 191 |
| MsG0180005854.01.T03 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 4.97e-56 | 191 |
| MsG0180005854.01.T03 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 4.97e-56 | 191 |
| MsG0180005854.01.T03 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 4.97e-56 | 191 |
| MsG0180005854.01.T03 | AT5G65980 | 25.721 | 451 | 269 | 7 | 17 | 461 | 5 | 395 | 4.28e-54 | 186 |
| MsG0180005854.01.T03 | AT5G65980 | 26.225 | 408 | 235 | 7 | 17 | 418 | 5 | 352 | 3.93e-48 | 169 |
| MsG0180005854.01.T03 | AT1G20925 | 37.209 | 172 | 107 | 1 | 281 | 452 | 293 | 463 | 4.58e-28 | 116 |
| MsG0180005854.01.T03 | AT1G20925 | 33.540 | 161 | 105 | 1 | 21 | 179 | 97 | 257 | 1.53e-24 | 106 |
| MsG0180005854.01.T03 | AT1G76530 | 35.333 | 150 | 95 | 1 | 24 | 171 | 12 | 161 | 1.86e-21 | 95.5 |
| MsG0180005854.01.T03 | AT1G76530 | 35.333 | 150 | 95 | 1 | 24 | 171 | 12 | 161 | 3.83e-21 | 95.9 |
| MsG0180005854.01.T03 | AT1G76530 | 36.242 | 149 | 89 | 2 | 309 | 452 | 259 | 406 | 3.13e-17 | 84.0 |
| MsG0180005854.01.T03 | AT1G76530 | 35.333 | 150 | 95 | 1 | 24 | 171 | 12 | 161 | 3.83e-21 | 95.9 |
| MsG0180005854.01.T03 | AT1G76530 | 36.242 | 149 | 89 | 2 | 309 | 452 | 259 | 406 | 3.13e-17 | 84.0 |
| MsG0180005854.01.T02 | AT1G71090 | 64.373 | 407 | 98 | 2 | 2 | 362 | 42 | 447 | 8.41e-180 | 507 |
| MsG0180005854.01.T02 | AT5G01990 | 42.480 | 379 | 201 | 5 | 1 | 363 | 53 | 430 | 3.28e-107 | 321 |
| MsG0180005854.01.T02 | AT2G17500 | 31.250 | 368 | 242 | 5 | 2 | 363 | 33 | 395 | 5.45e-63 | 206 |
| MsG0180005854.01.T02 | AT2G17500 | 31.250 | 368 | 242 | 5 | 2 | 363 | 33 | 395 | 5.45e-63 | 206 |
| MsG0180005854.01.T02 | AT2G17500 | 31.250 | 368 | 242 | 5 | 2 | 363 | 33 | 395 | 5.45e-63 | 206 |
| MsG0180005854.01.T02 | AT2G17500 | 31.250 | 368 | 242 | 5 | 2 | 363 | 33 | 395 | 5.45e-63 | 206 |
| MsG0180005854.01.T02 | AT1G76520 | 32.955 | 352 | 218 | 5 | 10 | 355 | 42 | 381 | 5.14e-60 | 198 |
| MsG0180005854.01.T02 | AT1G76520 | 32.955 | 352 | 218 | 5 | 10 | 355 | 42 | 381 | 5.14e-60 | 198 |
| MsG0180005854.01.T02 | AT5G65980 | 29.539 | 369 | 248 | 5 | 2 | 364 | 33 | 395 | 7.36e-58 | 193 |
| MsG0180005854.01.T02 | AT1G20925 | 33.051 | 354 | 210 | 6 | 10 | 355 | 129 | 463 | 7.77e-57 | 192 |
| MsG0180005854.01.T02 | AT5G65980 | 30.675 | 326 | 214 | 5 | 2 | 321 | 33 | 352 | 7.37e-52 | 176 |
| MsG0180005854.01.T02 | AT1G76530 | 31.117 | 376 | 237 | 7 | 1 | 355 | 32 | 406 | 5.05e-41 | 149 |
| MsG0180005854.01.T02 | AT1G76530 | 31.117 | 376 | 237 | 7 | 1 | 355 | 32 | 406 | 5.05e-41 | 149 |
| MsG0180005854.01.T02 | AT1G76530 | 36.923 | 130 | 80 | 1 | 1 | 128 | 32 | 161 | 1.75e-18 | 85.9 |
Find 75 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGATAGTTTGGAAATTT+TGG | 0.137457 | 1:+96905949 | MsG0180005854.01.T04:CDS |
| CCTGATTTCGATTCATTATC+AGG | 0.203290 | 1:+96905701 | MsG0180005854.01.T04:CDS |
| CCTTGTGTAATGCTTATATT+AGG | 0.218422 | 1:+96905986 | MsG0180005854.01.T04:CDS |
| CTTAAAGATTCTAGCAATAA+AGG | 0.231812 | 1:-96905642 | None:intergenic |
| CTTGTTGTGCTTCCTGTTAT+AGG | 0.233061 | 1:+96906082 | MsG0180005854.01.T04:CDS |
| CATACTCAAAATACTCCTTT+TGG | 0.244311 | 1:+96905374 | MsG0180005854.01.T04:CDS |
| AAGCTTCAGCAGTTCTATTC+TGG | 0.253211 | 1:+96906251 | MsG0180005854.01.T04:CDS |
| TTAGGAATTAATTTCATTCT+TGG | 0.273011 | 1:-96905077 | None:intergenic |
| ACAATCATAATGACAGGATT+TGG | 0.274474 | 1:+96905308 | MsG0180005854.01.T04:CDS |
| GTGCTTCCTGTTATAGGAAT+TGG | 0.292331 | 1:+96906088 | MsG0180005854.01.T04:CDS |
| AACCAAGTTCACTAAATATT+AGG | 0.305263 | 1:-96905151 | None:intergenic |
| CTTGGAATTAAAACTACAAT+TGG | 0.314458 | 1:+96906043 | MsG0180005854.01.T04:CDS |
| TGCTTCCTGTTATAGGAATT+GGG | 0.320264 | 1:+96906089 | MsG0180005854.01.T04:CDS |
| AAAATAATCATATGTCTATT+AGG | 0.320538 | 1:+96905756 | MsG0180005854.01.T04:CDS |
| AGGAGTTTAAATGTGGCTTT+AGG | 0.328503 | 1:-96905095 | None:intergenic |
| TCTTTGTTGGCTATTATCAT+TGG | 0.349134 | 1:+96905869 | MsG0180005854.01.T04:CDS |
| CTTGTGTAATGCTTATATTA+GGG | 0.353196 | 1:+96905987 | MsG0180005854.01.T04:CDS |
| GTTTCTTTATCTTCAATTCC+AGG | 0.358521 | 1:-96905602 | None:intergenic |
| CTTATGTTTCTTTATCTCAA+TGG | 0.364572 | 1:+96905423 | MsG0180005854.01.T04:CDS |
| TCATATGTCTATTAGGTGTT+TGG | 0.365120 | 1:+96905763 | MsG0180005854.01.T04:CDS |
| ATTCCAAGTGTTGACTCATT+TGG | 0.365792 | 1:-96906028 | None:intergenic |
| TAGGAATTAATTTCATTCTT+GGG | 0.365940 | 1:-96905076 | None:intergenic |
| TGGCTGAGCCTAGAGTTGTT+AGG | 0.375993 | 1:+96905783 | MsG0180005854.01.T04:CDS |
| ACCAACAATTGCATCTTTGT+TGG | 0.380059 | 1:+96905856 | MsG0180005854.01.T04:CDS |
| GGTTGAAGTATGTGATGAAT+TGG | 0.402240 | 1:-96905833 | None:intergenic |
| GAAATCAGGATCAGGAATAA+TGG | 0.402945 | 1:-96905687 | None:intergenic |
| ACAATCCCAATTCCTATAAC+AGG | 0.408237 | 1:-96906094 | None:intergenic |
| AATCTTCTCATTGCTGTAGT+TGG | 0.414891 | 1:+96905341 | MsG0180005854.01.T04:CDS |
| GGGAGCAATTGCTAGCTTGA+GGG | 0.420113 | 1:+96906213 | MsG0180005854.01.T04:CDS |
| GTACTAAGAAGCACATTAAC+TGG | 0.420568 | 1:-96905215 | None:intergenic |
| GTGAATCTATTAAACCTTTG+AGG | 0.420872 | 1:-96905287 | None:intergenic |
| TTAAAGATTCTAGCAATAAA+GGG | 0.426630 | 1:-96905641 | None:intergenic |
| TGCCTAATATTTAGTGAACT+TGG | 0.428326 | 1:+96905149 | MsG0180005854.01.T04:CDS |
| CCTGATAATGAATCGAAATC+AGG | 0.429636 | 1:-96905701 | None:intergenic |
| TTAATCTGCCTTACACTCAT+AGG | 0.446570 | 1:+96905038 | MsG0180005854.01.T04:CDS |
| TACAGCAATGAGAAGATTAC+CGG | 0.449081 | 1:-96905336 | None:intergenic |
| GAAGTAGTCCTATGAGTGTA+AGG | 0.459679 | 1:-96905046 | None:intergenic |
| AGGAATTGGGATTGTTGTGT+TGG | 0.466637 | 1:+96906102 | MsG0180005854.01.T04:CDS |
| GTGCAAATACAAGTTTACTT+AGG | 0.473864 | 1:-96905115 | None:intergenic |
| TTGGAATTAAAACTACAATT+GGG | 0.477581 | 1:+96906044 | MsG0180005854.01.T04:CDS |
| TGGGAGCAATTGCTAGCTTG+AGG | 0.481846 | 1:+96906212 | MsG0180005854.01.T04:CDS |
| ACAATCTCATAATACTCAAA+AGG | 0.487804 | 1:-96905494 | None:intergenic |
| CTTGTAGAAGCTGAGTGGCC+TGG | 0.487906 | 1:+96905584 | MsG0180005854.01.T04:CDS |
| GCCAACAAAGATGCAATTGT+TGG | 0.492975 | 1:-96905857 | None:intergenic |
| CTTATCCTCCTAACAACTCT+AGG | 0.497949 | 1:-96905791 | None:intergenic |
| AATAATGGACGAGGAAATAC+CGG | 0.501207 | 1:-96905672 | None:intergenic |
| AATGAATCGAAATCAGGATC+AGG | 0.507261 | 1:-96905695 | None:intergenic |
| ATGCTTACTTGGATTCATAG+TGG | 0.542583 | 1:+96905247 | MsG0180005854.01.T04:CDS |
| AGGATCAGTAATGGCGGACG+AGG | 0.545194 | 1:+96905721 | MsG0180005854.01.T04:CDS |
| AACTACAATTGGGATAATTG+TGG | 0.546358 | 1:+96906054 | MsG0180005854.01.T04:CDS |
| ATCTATTAAACCTTTGAGGT+GGG | 0.559127 | 1:-96905283 | None:intergenic |
| GGAGCAATTGCTAGCTTGAG+GGG | 0.563569 | 1:+96906214 | MsG0180005854.01.T04:CDS |
| AGATTCACAATCATAATGAC+AGG | 0.565619 | 1:+96905302 | MsG0180005854.01.T04:CDS |
| CTATATGTCACCCACCTCAA+AGG | 0.567998 | 1:+96905273 | MsG0180005854.01.T04:CDS |
| TTGTGTAATGCTTATATTAG+GGG | 0.572998 | 1:+96905988 | MsG0180005854.01.T04:CDS |
| CTATCTGTCATAAAAGACAT+TGG | 0.574241 | 1:-96905935 | None:intergenic |
| TTTACTTAGGAGTTTAAATG+TGG | 0.575857 | 1:-96905102 | None:intergenic |
| AGGCAGATTAACTTCAACAA+AGG | 0.577831 | 1:-96905026 | None:intergenic |
| GGACCAAATGAGTCAACACT+TGG | 0.581085 | 1:+96906025 | MsG0180005854.01.T04:CDS |
| TTCATTATCAGGATCAGTAA+TGG | 0.585783 | 1:+96905712 | MsG0180005854.01.T04:CDS |
| CACTCAGCTTCTACAAGAAG+CGG | 0.586574 | 1:-96905578 | None:intergenic |
| ATGAAAATAATGATAAAATG+AGG | 0.590735 | 1:+96904970 | MsG0180005854.01.T03:CDS |
| AACAAAGATGCAATTGTTGG+TGG | 0.598573 | 1:-96905854 | None:intergenic |
| GGAAAACAATGCAATGCAAG+AGG | 0.599070 | 1:+96905395 | MsG0180005854.01.T04:CDS |
| AATCTATTAAACCTTTGAGG+TGG | 0.609661 | 1:-96905284 | None:intergenic |
| TGTGTAATGCTTATATTAGG+GGG | 0.611243 | 1:+96905989 | MsG0180005854.01.T04:CDS |
| CTGAGCCTAGAGTTGTTAGG+AGG | 0.617408 | 1:+96905786 | MsG0180005854.01.T04:CDS |
| GCTCCCAACAAAATAGCACT+TGG | 0.619409 | 1:-96906196 | None:intergenic |
| ATCTCATAATACTCAAAAGG+AGG | 0.634016 | 1:-96905491 | None:intergenic |
| ATGACAGGATTTGGAAACAC+CGG | 0.646503 | 1:+96905317 | MsG0180005854.01.T04:CDS |
| AGGATCAGGAATAATGGACG+AGG | 0.649375 | 1:-96905681 | None:intergenic |
| CGCTTCTTGTAGAAGCTGAG+TGG | 0.653516 | 1:+96905579 | MsG0180005854.01.T04:CDS |
| AGTTCACTAAATATTAGGCA+AGG | 0.654744 | 1:-96905146 | None:intergenic |
| ATTATCAGGATCAGTAATGG+CGG | 0.689441 | 1:+96905715 | MsG0180005854.01.T04:CDS |
| CCTAATATAAGCATTACACA+AGG | 0.709180 | 1:-96905986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATCATATGTCTATT+AGG | + | Chr1:96905756-96905775 | MsG0180005854.01.T04:CDS | 15.0% |
| !! | ATGAAAATAATGATAAAATG+AGG | + | Chr1:96904970-96904989 | MsG0180005854.01.T03:CDS | 15.0% |
| !! | TAGGAATTAATTTCATTCTT+GGG | - | Chr1:96905079-96905098 | None:intergenic | 20.0% |
| !! | TTAAAGATTCTAGCAATAAA+GGG | - | Chr1:96905644-96905663 | None:intergenic | 20.0% |
| !! | TTAGGAATTAATTTCATTCT+TGG | - | Chr1:96905080-96905099 | None:intergenic | 20.0% |
| !! | TTGGAATTAAAACTACAATT+GGG | + | Chr1:96906044-96906063 | MsG0180005854.01.T04:CDS | 20.0% |
| !!! | AAAGAAAAATGTTTTCAACT+GGG | - | Chr1:96905903-96905922 | None:intergenic | 20.0% |
| ! | AACCAAGTTCACTAAATATT+AGG | - | Chr1:96905154-96905173 | None:intergenic | 25.0% |
| ! | ACAATCTCATAATACTCAAA+AGG | - | Chr1:96905497-96905516 | None:intergenic | 25.0% |
| ! | CTTAAAGATTCTAGCAATAA+AGG | - | Chr1:96905645-96905664 | None:intergenic | 25.0% |
| ! | CTTATGTTTCTTTATCTCAA+TGG | + | Chr1:96905423-96905442 | MsG0180005854.01.T04:CDS | 25.0% |
| ! | CTTGGAATTAAAACTACAAT+TGG | + | Chr1:96906043-96906062 | MsG0180005854.01.T04:CDS | 25.0% |
| ! | CTTGTGTAATGCTTATATTA+GGG | + | Chr1:96905987-96906006 | MsG0180005854.01.T04:CDS | 25.0% |
| ! | TTGTGTAATGCTTATATTAG+GGG | + | Chr1:96905988-96906007 | MsG0180005854.01.T04:CDS | 25.0% |
| ! | TTTACTTAGGAGTTTAAATG+TGG | - | Chr1:96905105-96905124 | None:intergenic | 25.0% |
| !! | AAGAAAAATGTTTTCAACTG+GGG | - | Chr1:96905902-96905921 | None:intergenic | 25.0% |
| !! | CAAAGAAAAATGTTTTCAAC+TGG | - | Chr1:96905904-96905923 | None:intergenic | 25.0% |
| !! | CAGTTGAAAACATTTTTCTT+TGG | + | Chr1:96905902-96905921 | MsG0180005854.01.T04:CDS | 25.0% |
| !! | CATTACTCTTGAGAATTTTA+AGG | + | Chr1:96905178-96905197 | MsG0180005854.01.T04:CDS | 25.0% |
| AACTACAATTGGGATAATTG+TGG | + | Chr1:96906054-96906073 | MsG0180005854.01.T04:CDS | 30.0% | |
| ACAATCATAATGACAGGATT+TGG | + | Chr1:96905308-96905327 | MsG0180005854.01.T04:CDS | 30.0% | |
| AGATTCACAATCATAATGAC+AGG | + | Chr1:96905302-96905321 | MsG0180005854.01.T04:CDS | 30.0% | |
| AGTTCACTAAATATTAGGCA+AGG | - | Chr1:96905149-96905168 | None:intergenic | 30.0% | |
| ATCTCATAATACTCAAAAGG+AGG | - | Chr1:96905494-96905513 | None:intergenic | 30.0% | |
| CCTAATATAAGCATTACACA+AGG | - | Chr1:96905989-96906008 | None:intergenic | 30.0% | |
| CCTTGTGTAATGCTTATATT+AGG | + | Chr1:96905986-96906005 | MsG0180005854.01.T04:CDS | 30.0% | |
| CTATCTGTCATAAAAGACAT+TGG | - | Chr1:96905938-96905957 | None:intergenic | 30.0% | |
| GTGAATCTATTAAACCTTTG+AGG | - | Chr1:96905290-96905309 | None:intergenic | 30.0% | |
| GTGCAAATACAAGTTTACTT+AGG | - | Chr1:96905118-96905137 | None:intergenic | 30.0% | |
| GTTTCTTTATCTTCAATTCC+AGG | - | Chr1:96905605-96905624 | None:intergenic | 30.0% | |
| TCATATGTCTATTAGGTGTT+TGG | + | Chr1:96905763-96905782 | MsG0180005854.01.T04:CDS | 30.0% | |
| TGCCTAATATTTAGTGAACT+TGG | + | Chr1:96905149-96905168 | MsG0180005854.01.T04:CDS | 30.0% | |
| TGTGTAATGCTTATATTAGG+GGG | + | Chr1:96905989-96906008 | MsG0180005854.01.T04:CDS | 30.0% | |
| TTCATTATCAGGATCAGTAA+TGG | + | Chr1:96905712-96905731 | MsG0180005854.01.T04:CDS | 30.0% | |
| ! | AATCTATTAAACCTTTGAGG+TGG | - | Chr1:96905287-96905306 | None:intergenic | 30.0% |
| ! | CATACTCAAAATACTCCTTT+TGG | + | Chr1:96905374-96905393 | MsG0180005854.01.T04:CDS | 30.0% |
| ! | GACAGATAGTTTGGAAATTT+TGG | + | Chr1:96905949-96905968 | MsG0180005854.01.T04:CDS | 30.0% |
| ! | GTCTTTTATGACAGATAGTT+TGG | + | Chr1:96905940-96905959 | MsG0180005854.01.T04:CDS | 30.0% |
| ! | TCTTTGTTGGCTATTATCAT+TGG | + | Chr1:96905869-96905888 | MsG0180005854.01.T04:CDS | 30.0% |
| !! | AGAATCTTTAAGAGCTTTTC+CGG | + | Chr1:96905653-96905672 | MsG0180005854.01.T04:CDS | 30.0% |
| !! | ATCTATTAAACCTTTGAGGT+GGG | - | Chr1:96905286-96905305 | None:intergenic | 30.0% |
| !! | CACTTTTGTTTATCACATGA+TGG | + | Chr1:96905466-96905485 | MsG0180005854.01.T04:CDS | 30.0% |
| !! | CTCTTGAGAATTTTAAGGAA+TGG | + | Chr1:96905183-96905202 | MsG0180005854.01.T04:CDS | 30.0% |
| !! | TTGAGAATTTTAAGGAATGG+TGG | + | Chr1:96905186-96905205 | MsG0180005854.01.T04:CDS | 30.0% |
| !!! | ACATTTTTTGGATGCTTACT+TGG | + | Chr1:96905236-96905255 | MsG0180005854.01.T04:CDS | 30.0% |
| !!! | GGCTGATAAGTTGAATTTTT+TGG | + | Chr1:96906123-96906142 | MsG0180005854.01.T04:CDS | 30.0% |
| !!! | GTGCTTCTTAGTACATTTTT+TGG | + | Chr1:96905224-96905243 | MsG0180005854.01.T04:CDS | 30.0% |
| AACAAAGATGCAATTGTTGG+TGG | - | Chr1:96905857-96905876 | None:intergenic | 35.0% | |
| AATCTTCTCATTGCTGTAGT+TGG | + | Chr1:96905341-96905360 | MsG0180005854.01.T04:CDS | 35.0% | |
| AATGAATCGAAATCAGGATC+AGG | - | Chr1:96905698-96905717 | None:intergenic | 35.0% | |
| ACAATCCCAATTCCTATAAC+AGG | - | Chr1:96906097-96906116 | None:intergenic | 35.0% | |
| ACCAACAATTGCATCTTTGT+TGG | + | Chr1:96905856-96905875 | MsG0180005854.01.T04:CDS | 35.0% | |
| AGGAGTTTAAATGTGGCTTT+AGG | - | Chr1:96905098-96905117 | None:intergenic | 35.0% | |
| AGGCAGATTAACTTCAACAA+AGG | - | Chr1:96905029-96905048 | None:intergenic | 35.0% | |
| ATGCTTACTTGGATTCATAG+TGG | + | Chr1:96905247-96905266 | MsG0180005854.01.T04:CDS | 35.0% | |
| ATTATCAGGATCAGTAATGG+CGG | + | Chr1:96905715-96905734 | MsG0180005854.01.T04:CDS | 35.0% | |
| CCTGATTTCGATTCATTATC+AGG | + | Chr1:96905701-96905720 | MsG0180005854.01.T04:CDS | 35.0% | |
| GAAATCAGGATCAGGAATAA+TGG | - | Chr1:96905690-96905709 | None:intergenic | 35.0% | |
| GGTTGAAGTATGTGATGAAT+TGG | - | Chr1:96905836-96905855 | None:intergenic | 35.0% | |
| TACAGCAATGAGAAGATTAC+CGG | - | Chr1:96905339-96905358 | None:intergenic | 35.0% | |
| TGCTTCCTGTTATAGGAATT+GGG | + | Chr1:96906089-96906108 | MsG0180005854.01.T04:CDS | 35.0% | |
| TTAATCTGCCTTACACTCAT+AGG | + | Chr1:96905038-96905057 | MsG0180005854.01.T04:CDS | 35.0% | |
| ! | CCTGATAATGAATCGAAATC+AGG | - | Chr1:96905704-96905723 | None:intergenic | 35.0% |
| ! | GCATTGCATTGTTTTCCAAA+AGG | - | Chr1:96905392-96905411 | None:intergenic | 35.0% |
| ! | GTACTAAGAAGCACATTAAC+TGG | - | Chr1:96905218-96905237 | None:intergenic | 35.0% |
| !! | AATAATGGACGAGGAAATAC+CGG | - | Chr1:96905675-96905694 | None:intergenic | 35.0% |
| !! | ATTCCAAGTGTTGACTCATT+TGG | - | Chr1:96906031-96906050 | None:intergenic | 35.0% |
| !! | GATAGTTTGGAAATTTTGGC+TGG | + | Chr1:96905953-96905972 | MsG0180005854.01.T04:CDS | 35.0% |
| !!! | AACACCAAGTGCTATTTTGT+TGG | + | Chr1:96906192-96906211 | MsG0180005854.01.T04:CDS | 35.0% |
| !!! | ACACCAAGTGCTATTTTGTT+GGG | + | Chr1:96906193-96906212 | MsG0180005854.01.T04:CDS | 35.0% |
| AAGCTTCAGCAGTTCTATTC+TGG | + | Chr1:96906251-96906270 | MsG0180005854.01.T04:CDS | 40.0% | |
| AGGAATTGGGATTGTTGTGT+TGG | + | Chr1:96906102-96906121 | MsG0180005854.01.T04:CDS | 40.0% | |
| ATGACAGGATTTGGAAACAC+CGG | + | Chr1:96905317-96905336 | MsG0180005854.01.T04:CDS | 40.0% | |
| CTTATCCTCCTAACAACTCT+AGG | - | Chr1:96905794-96905813 | None:intergenic | 40.0% | |
| GAAGTAGTCCTATGAGTGTA+AGG | - | Chr1:96905049-96905068 | None:intergenic | 40.0% | |
| GCCAACAAAGATGCAATTGT+TGG | - | Chr1:96905860-96905879 | None:intergenic | 40.0% | |
| GGAAAACAATGCAATGCAAG+AGG | + | Chr1:96905395-96905414 | MsG0180005854.01.T04:CDS | 40.0% | |
| GTGCTTCCTGTTATAGGAAT+TGG | + | Chr1:96906088-96906107 | MsG0180005854.01.T04:CDS | 40.0% | |
| ! | CTTGTTGTGCTTCCTGTTAT+AGG | + | Chr1:96906082-96906101 | MsG0180005854.01.T04:CDS | 40.0% |
| CACTCAGCTTCTACAAGAAG+CGG | - | Chr1:96905581-96905600 | None:intergenic | 45.0% | |
| CTATATGTCACCCACCTCAA+AGG | + | Chr1:96905273-96905292 | MsG0180005854.01.T04:CDS | 45.0% | |
| GCTCCCAACAAAATAGCACT+TGG | - | Chr1:96906199-96906218 | None:intergenic | 45.0% | |
| GGACCAAATGAGTCAACACT+TGG | + | Chr1:96906025-96906044 | MsG0180005854.01.T04:CDS | 45.0% | |
| !! | AGGATCAGGAATAATGGACG+AGG | - | Chr1:96905684-96905703 | None:intergenic | 45.0% |
| !!! | GGAAATTTTGGCTGGTGCAA+TGG | + | Chr1:96905961-96905980 | MsG0180005854.01.T04:CDS | 45.0% |
| CGCTTCTTGTAGAAGCTGAG+TGG | + | Chr1:96905579-96905598 | MsG0180005854.01.T04:CDS | 50.0% | |
| CTGAGCCTAGAGTTGTTAGG+AGG | + | Chr1:96905786-96905805 | MsG0180005854.01.T04:CDS | 50.0% | |
| TGGCTGAGCCTAGAGTTGTT+AGG | + | Chr1:96905783-96905802 | MsG0180005854.01.T04:CDS | 50.0% | |
| ! | GGAGCAATTGCTAGCTTGAG+GGG | + | Chr1:96906214-96906233 | MsG0180005854.01.T04:CDS | 50.0% |
| ! | GGGAGCAATTGCTAGCTTGA+GGG | + | Chr1:96906213-96906232 | MsG0180005854.01.T04:CDS | 50.0% |
| ! | TGGGAGCAATTGCTAGCTTG+AGG | + | Chr1:96906212-96906231 | MsG0180005854.01.T04:CDS | 50.0% |
| ! | TTAGGGGGTATGCTAGCTGA+AGG | + | Chr1:96906004-96906023 | MsG0180005854.01.T04:CDS | 50.0% |
| CTTGTAGAAGCTGAGTGGCC+TGG | + | Chr1:96905584-96905603 | MsG0180005854.01.T04:CDS | 55.0% | |
| !! | AGGATCAGTAATGGCGGACG+AGG | + | Chr1:96905721-96905740 | MsG0180005854.01.T04:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 96904954 | 96906345 | 96904954 | ID=MsG0180005854.01;Name=MsG0180005854.01 |
| Chr1 | mRNA | 96904987 | 96906345 | 96904987 | ID=MsG0180005854.01.T01;Parent=MsG0180005854.01;Name=MsG0180005854.01.T01;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|2|0|442 |
| Chr1 | exon | 96904987 | 96905674 | 96904987 | ID=MsG0180005854.01.T01:exon:16237;Parent=MsG0180005854.01.T01 |
| Chr1 | exon | 96905705 | 96906345 | 96905705 | ID=MsG0180005854.01.T01:exon:16238;Parent=MsG0180005854.01.T01 |
| Chr1 | CDS | 96904987 | 96905674 | 96904987 | ID=MsG0180005854.01.T01:cds;Parent=MsG0180005854.01.T01 |
| Chr1 | CDS | 96905705 | 96906345 | 96905705 | ID=MsG0180005854.01.T01:cds;Parent=MsG0180005854.01.T01 |
| Chr1 | mRNA | 96905083 | 96906345 | 96905083 | ID=MsG0180005854.01.T02;Parent=MsG0180005854.01;Name=MsG0180005854.01.T02;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0|0|2|0|366 |
| Chr1 | exon | 96905083 | 96905674 | 96905083 | ID=MsG0180005854.01.T02:exon:16239;Parent=MsG0180005854.01.T02 |
| Chr1 | exon | 96905837 | 96906345 | 96905837 | ID=MsG0180005854.01.T02:exon:16240;Parent=MsG0180005854.01.T02 |
| Chr1 | CDS | 96905083 | 96905674 | 96905083 | ID=MsG0180005854.01.T02:cds;Parent=MsG0180005854.01.T02 |
| Chr1 | CDS | 96905837 | 96906345 | 96905837 | ID=MsG0180005854.01.T02:cds;Parent=MsG0180005854.01.T02 |
| Chr1 | mRNA | 96904954 | 96906345 | 96904954 | ID=MsG0180005854.01.T03;Parent=MsG0180005854.01;Name=MsG0180005854.01.T03;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|463 |
| Chr1 | exon | 96904954 | 96906345 | 96904954 | ID=MsG0180005854.01.T03:exon:16241;Parent=MsG0180005854.01.T03 |
| Chr1 | CDS | 96904954 | 96906345 | 96904954 | ID=MsG0180005854.01.T03:cds;Parent=MsG0180005854.01.T03 |
| Chr1 | mRNA | 96904987 | 96906345 | 96904987 | ID=MsG0180005854.01.T04;Parent=MsG0180005854.01;Name=MsG0180005854.01.T04;_AED=0.06;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|452 |
| Chr1 | exon | 96904987 | 96906345 | 96904987 | ID=MsG0180005854.01.T04:exon:16242;Parent=MsG0180005854.01.T04 |
| Chr1 | CDS | 96904987 | 96906345 | 96904987 | ID=MsG0180005854.01.T04:cds;Parent=MsG0180005854.01.T04 |
| Gene Sequence |
| Protein sequence |
