AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047112.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047112.01.T01 MTR_7g079440 98.621 145 2 0 7 151 545 689 9.07e-102 306
MsG0880047112.01.T01 MTR_1g062190 53.774 106 48 1 7 112 437 541 1.04e-34 126
MsG0880047112.01.T01 MTR_5g009110 43.902 123 50 1 7 110 300 422 1.13e-27 106
MsG0880047112.01.T01 MTR_5g009110 43.902 123 50 1 7 110 448 570 2.49e-27 106
MsG0880047112.01.T01 MTR_7g079440 100.000 41 0 0 7 47 545 585 6.05e-25 99.8
MsG0880047112.01.T01 MTR_6g022450 38.462 78 48 0 5 82 403 480 2.11e-15 72.4
MsG0880047112.01.T01 MTR_8g012590 38.462 78 48 0 5 82 392 469 6.76e-15 70.9
MsG0880047112.01.T01 MTR_2g055430 40.000 85 45 3 13 93 423 505 2.90e-13 66.2
MsG0880047112.01.T01 MTR_5g018990 31.858 113 69 3 7 119 399 503 3.40e-13 66.2
MsG0880047112.01.T01 MTR_8g035780 35.849 106 64 3 6 110 408 510 3.98e-13 65.9
MsG0880047112.01.T01 MTR_2g072400 40.476 84 44 3 13 92 421 502 5.53e-13 65.5
MsG0880047112.01.T01 MTR_8g035790 37.113 97 58 2 15 110 3 97 5.63e-13 61.6
MsG0880047112.01.T01 MTR_2g072310 40.000 90 48 4 7 92 250 337 7.84e-13 64.7
MsG0880047112.01.T01 MTR_2g055470 38.824 85 46 3 13 93 423 505 8.29e-13 65.1
MsG0880047112.01.T01 MTR_3g058210 37.349 83 50 1 3 85 394 474 8.58e-13 65.1
MsG0880047112.01.T01 MTR_8g012585 38.095 84 51 1 5 87 342 425 8.68e-13 65.1
MsG0880047112.01.T01 MTR_8g035860 33.019 106 67 3 6 110 407 509 1.52e-12 64.3
MsG0880047112.01.T01 MTR_5g018980 34.568 81 51 1 2 82 396 474 1.75e-12 63.9
MsG0880047112.01.T01 MTR_1g442730 28.448 116 75 2 3 118 391 498 2.45e-12 63.5
MsG0880047112.01.T01 MTR_7g006900 40.000 90 44 3 7 92 375 458 2.58e-12 63.5
MsG0880047112.01.T01 MTR_1g035190 27.586 116 76 2 3 118 377 484 3.58e-12 63.2
MsG0880047112.01.T01 MTR_0554s0020 29.060 117 75 2 3 119 393 501 3.74e-12 63.2
MsG0880047112.01.T01 MTR_3g058400 29.630 108 68 2 3 110 393 492 4.33e-12 62.8
MsG0880047112.01.T01 MTR_5g019010 29.565 115 73 2 5 119 396 502 5.14e-12 62.8
MsG0880047112.01.T01 MTR_2g072380 38.889 90 49 4 7 92 250 337 8.38e-12 62.0
MsG0880047112.01.T01 MTR_3g058390 28.704 108 69 3 3 110 392 491 9.99e-12 62.0
MsG0880047112.01.T01 MTR_1g035140 26.496 117 78 2 3 119 391 499 1.01e-11 62.0
MsG0880047112.01.T01 MTR_5g095260 31.532 111 68 3 7 117 396 498 1.17e-11 61.6
MsG0880047112.01.T01 MTR_2g072380 38.889 90 49 4 7 92 390 477 1.52e-11 61.2
MsG0880047112.01.T01 MTR_2g072260 36.667 90 51 3 7 92 410 497 1.65e-11 61.2
MsG0880047112.01.T01 MTR_6g017325 35.484 93 46 4 8 92 407 493 1.76e-11 61.2
MsG0880047112.01.T01 MTR_0059s0170 26.957 115 76 2 3 117 393 499 2.12e-11 60.8
MsG0880047112.01.T01 MTR_5g095220 37.975 79 47 2 7 85 365 441 2.60e-11 60.8
MsG0880047112.01.T01 MTR_3g058110 34.940 83 52 1 3 85 396 476 3.21e-11 60.5
MsG0880047112.01.T01 MTR_7g012330 35.443 79 49 1 7 85 394 470 3.83e-11 60.1
MsG0880047112.01.T01 MTR_8g466180 36.145 83 51 1 3 85 392 472 4.11e-11 60.1
MsG0880047112.01.T01 MTR_1g097240 29.730 111 70 2 7 117 391 493 4.51e-11 60.1
MsG0880047112.01.T01 MTR_4g075110 30.097 103 68 3 9 110 450 549 4.57e-11 60.1
MsG0880047112.01.T01 MTR_6g034965 37.662 77 46 2 8 82 391 467 6.76e-11 59.7
MsG0880047112.01.T01 MTR_2g072420 37.931 87 47 5 10 92 44 127 8.86e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047112.01.T01 AT1G31800 78.333 120 23 1 7 123 466 585 4.55e-63 203
MsG0880047112.01.T01 AT3G53130 54.808 104 46 1 7 110 437 539 1.45e-34 126
MsG0880047112.01.T01 AT4G15110 44.000 125 51 2 7 112 456 580 5.34e-26 102
MsG0880047112.01.T01 AT3G14630 39.604 101 51 5 13 109 468 562 5.56e-13 65.5
MsG0880047112.01.T01 AT3G14630 39.604 101 51 5 13 109 413 507 6.92e-13 65.5
MsG0880047112.01.T01 AT5G38450 41.111 90 44 4 7 92 418 502 1.38e-12 64.3
MsG0880047112.01.T01 AT3G14610 42.353 85 43 4 13 93 417 499 2.00e-12 63.9
MsG0880047112.01.T01 AT3G14620 41.573 89 46 4 8 92 415 501 2.92e-12 63.5
MsG0880047112.01.T01 AT1G67110 39.362 94 40 4 7 92 412 496 6.54e-12 62.4
MsG0880047112.01.T01 AT4G12320 35.802 81 51 1 5 85 405 484 6.69e-12 62.4
MsG0880047112.01.T01 AT3G14680 39.286 84 45 4 13 92 417 498 7.07e-12 62.4
MsG0880047112.01.T01 AT4G12300 34.568 81 52 1 5 85 403 482 7.57e-12 62.4
MsG0880047112.01.T01 AT2G44890 34.906 106 65 3 6 110 406 508 9.16e-12 62.0
MsG0880047112.01.T01 AT4G13310 43.038 79 42 3 7 84 391 467 9.83e-12 62.0
MsG0880047112.01.T01 AT3G14660 40.000 85 45 4 13 93 271 353 1.02e-11 61.6
MsG0880047112.01.T01 AT4G37320 35.417 96 54 2 2 97 386 473 1.26e-11 61.6
MsG0880047112.01.T01 AT3G14660 40.000 85 45 4 13 93 417 499 1.36e-11 61.6
MsG0880047112.01.T01 AT4G12310 35.802 81 51 1 5 85 407 486 1.89e-11 61.2
MsG0880047112.01.T01 AT3G25180 35.556 90 55 2 5 94 402 488 3.63e-11 60.5
MsG0880047112.01.T01 AT1G01280 39.024 82 47 2 3 81 394 475 6.97e-11 59.7
MsG0880047112.01.T01 AT1G24540 31.731 104 67 3 5 107 417 517 7.28e-11 59.3

Find 49 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTAATGGCCATCTTTC+AGG 0.151770 8:-82089818 None:intergenic
GGCTCAAAAGTCCTGATTTC+TGG 0.181250 8:+82091203 MsG0880047112.01.T01:exon
AAGCCTTGATTGGTCTCATT+AGG 0.275747 8:-82089848 None:intergenic
TCTGATAAAACCGGGGAAAT+AGG 0.320925 8:+82091159 MsG0880047112.01.T01:CDS
GGAGGGCCGCGAAAATGTAT+AGG 0.353644 8:+82089967 MsG0880047112.01.T01:CDS
TGGATTCATTTCCAGAAATC+AGG 0.360893 8:-82091214 None:intergenic
ATTATACTTGAAGCCTTGAT+TGG 0.365056 8:-82089858 None:intergenic
GAGGGCCGCGAAAATGTATA+GGG 0.367827 8:+82089968 MsG0880047112.01.T01:CDS
TCAGAAGGACCAAGTTTATC+AGG 0.369009 8:+82091182 MsG0880047112.01.T01:CDS
TCTTGTAGATATCTTCCATT+TGG 0.371992 8:+82089943 MsG0880047112.01.T01:intron
AGCCTTGATTGGTCTCATTA+GGG 0.382575 8:-82089847 None:intergenic
TTATAGGTTGTGATGACTAC+TGG 0.382788 8:+82091021 MsG0880047112.01.T01:intron
TGATTGGTCTCATTAGGGTT+AGG 0.384508 8:-82089842 None:intergenic
CCTGAAAGATGGCCATTAGA+TGG 0.433677 8:+82089818 MsG0880047112.01.T01:CDS
GTGAACATTTCTGATAAAAC+CGG 0.434927 8:+82091150 MsG0880047112.01.T01:CDS
TATTTAATTCCTTTCTCAAA+AGG 0.459584 8:+82091292 MsG0880047112.01.T01:three_prime_UTR
TTTCGCGGCCCTCCGCCAAA+TGG 0.467268 8:-82089958 None:intergenic
TGTAGATATCTTCCATTTGG+CGG 0.473369 8:+82089946 MsG0880047112.01.T01:intron
GTCCTTCTGACCTATTTCCC+CGG 0.475015 8:-82091169 None:intergenic
TTCAACTTTCAAATGGCAGT+TGG 0.479545 8:+82090228 MsG0880047112.01.T01:CDS
ACAGTGTTGGACTGCGATGC+AGG 0.491671 8:-82089772 None:intergenic
CAATGTTGACATCTGTAATG+AGG 0.497769 8:-82091112 None:intergenic
TCAGCATCATTCCACAGTGT+TGG 0.504000 8:-82089785 None:intergenic
ATAAATTTGAACCTGAAAGA+TGG 0.507922 8:+82089807 MsG0880047112.01.T01:CDS
CTCATTACAGATGTCAACAT+TGG 0.509709 8:+82091113 MsG0880047112.01.T01:CDS
TTAGGGTTAGGTCCATCTAA+TGG 0.512276 8:-82089830 None:intergenic
ACAGATGTCAACATTGGAAG+TGG 0.522074 8:+82091119 MsG0880047112.01.T01:CDS
TGAAGATGTGAAGGATTTGA+AGG 0.526378 8:-82091328 None:intergenic
TTATCAGAAATGTTCACGGA+TGG 0.529296 8:-82091144 None:intergenic
TAGACGGTTCAACTTTCAAA+TGG 0.531035 8:+82090221 MsG0880047112.01.T01:CDS
TAAGAATTGTGAAGATGTGA+AGG 0.536146 8:-82091337 None:intergenic
AACCCTAATGAGACCAATCA+AGG 0.540469 8:+82089845 MsG0880047112.01.T01:CDS
CACTTGCAATGCTTGTTAGA+CGG 0.542931 8:+82090205 MsG0880047112.01.T01:CDS
AGATATCTTCCATTTGGCGG+AGG 0.547508 8:+82089949 MsG0880047112.01.T01:intron
GATATCTTCCATTTGGCGGA+GGG 0.554842 8:+82089950 MsG0880047112.01.T01:intron
ATCTCATTAATTATTTGCAG+AGG 0.564832 8:+82089723 None:intergenic
AATTAAATAAGTAATTCACT+TGG 0.573367 8:-82091278 None:intergenic
ATCTGTAATGAGGGAACGAT+AGG 0.577279 8:-82091102 None:intergenic
AATGTTGACATCTGTAATGA+GGG 0.578312 8:-82091111 None:intergenic
AACCGGGGAAATAGGTCAGA+AGG 0.578446 8:+82091167 MsG0880047112.01.T01:CDS
TGTAATGAGGGAACGATAGG+AGG 0.587796 8:-82091099 None:intergenic
TGAACATTTCTGATAAAACC+GGG 0.588434 8:+82091151 MsG0880047112.01.T01:CDS
GCGACAATTCATACAACACA+AGG 0.641085 8:+82091045 MsG0880047112.01.T01:CDS
ACTGCGATGCAGGTTCCACA+CGG 0.678977 8:-82089762 None:intergenic
GGATATGTTTGCTTCATACG+AGG 0.681359 8:+82089990 MsG0880047112.01.T01:CDS
AGTCAGCGATACTATGAACG+TGG 0.698881 8:+82091452 MsG0880047112.01.T01:three_prime_UTR
AGGGCCGCGAAAATGTATAG+GGG 0.727592 8:+82089969 MsG0880047112.01.T01:CDS
TGCATCGCAGTCCAACACTG+TGG 0.729657 8:+82089774 MsG0880047112.01.T01:CDS
GAACATTTCTGATAAAACCG+GGG 0.730147 8:+82091152 MsG0880047112.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATAAGTAATTCACT+TGG - Chr8:82091281-82091300 None:intergenic 15.0%
!! ACTAAGACAAAAAAATTATA+TGG + Chr8:82090628-82090647 MsG0880047112.01.T01:intron 15.0%
!! AGAAAACAAATTATATTGTA+TGG - Chr8:82090545-82090564 None:intergenic 15.0%
!! ATGTTTAAAAAGGATATTAT+TGG + Chr8:82090459-82090478 MsG0880047112.01.T01:intron 15.0%
!! CTAAGACAAAAAAATTATAT+GGG + Chr8:82090629-82090648 MsG0880047112.01.T01:intron 15.0%
!! AACCAAATATTAACATAAGT+TGG + Chr8:82090765-82090784 MsG0880047112.01.T01:intron 20.0%
!! AATATCCTTCTTAAACATTA+AGG - Chr8:82090387-82090406 None:intergenic 20.0%
!! AATCCATTCATACAATTATA+TGG - Chr8:82090086-82090105 None:intergenic 20.0%
!! ACCAAATATTAACATAAGTT+GGG + Chr8:82090766-82090785 MsG0880047112.01.T01:intron 20.0%
!! ATGCATATTTCAAGATATTA+AGG + Chr8:82090679-82090698 MsG0880047112.01.T01:intron 20.0%
!! ATGTTTAAGAAGGATATTAT+TGG + Chr8:82090389-82090408 MsG0880047112.01.T01:intron 20.0%
!! TATTTAATTCCTTTCTCAAA+AGG + Chr8:82091292-82091311 MsG0880047112.01.T01:three_prime_UTR 20.0%
!!! AACAAAGTAGCTTTTTTTTT+AGG - Chr8:82090730-82090749 None:intergenic 20.0%
!!! AATATCCTTTTTAAACATCA+GGG - Chr8:82090457-82090476 None:intergenic 20.0%
!!! TAATATCCTTTTTAAACATC+AGG - Chr8:82090458-82090477 None:intergenic 20.0%
!!! TTTTATAATGCTTATCGTAA+AGG + Chr8:82090173-82090192 MsG0880047112.01.T01:intron 20.0%
! AAAAGGAGAAAGATATTACA+AGG - Chr8:82090577-82090596 None:intergenic 25.0%
! AAATATTAGGAAAACATGTC+AGG - Chr8:82090425-82090444 None:intergenic 25.0%
! ATAAATTTGAACCTGAAAGA+TGG + Chr8:82089807-82089826 MsG0880047112.01.T01:CDS 25.0%
! CATGCAAATTGATTAAATAG+AGG - Chr8:82089885-82089904 None:intergenic 25.0%
! CCAAATATTAACATAAGTTG+GGG + Chr8:82090767-82090786 MsG0880047112.01.T01:intron 25.0%
! CTCTATTTAATCAATTTGCA+TGG + Chr8:82089883-82089902 MsG0880047112.01.T01:intron 25.0%
! GAACCATATAATTGTATGAA+TGG + Chr8:82090080-82090099 MsG0880047112.01.T01:intron 25.0%
! TTGCATGGTTTATAATATAC+AGG + Chr8:82089898-82089917 MsG0880047112.01.T01:intron 25.0%
!! CAAATATTAACATAAGTTGG+GGG + Chr8:82090768-82090787 MsG0880047112.01.T01:intron 25.0%
!! TGACATGTTTTCCTAATATT+TGG + Chr8:82090424-82090443 MsG0880047112.01.T01:intron 25.0%
!! TGTACTCATTTTATGTTGTA+TGG - Chr8:82091237-82091256 None:intergenic 25.0%
!!! AAAGTAGCTTTTTTTTTAGG+TGG - Chr8:82090727-82090746 None:intergenic 25.0%
!!! ACTTTGTTGTGATTTTTTCA+AGG + Chr8:82090272-82090291 MsG0880047112.01.T01:intron 25.0%
!!! CTCTTTGTTTTAGGAAAAAA+AGG - Chr8:82090594-82090613 None:intergenic 25.0%
!!! GTTTTCCTAATATTTGGTTT+CGG + Chr8:82090430-82090449 MsG0880047112.01.T01:intron 25.0%
!!! TCAACTCATTGTGTTTTTAT+AGG + Chr8:82091005-82091024 MsG0880047112.01.T01:intron 25.0%
!!! TCATATTTGCTCTTTGTTTT+AGG - Chr8:82090603-82090622 None:intergenic 25.0%
AAATGTTGTGCACATACTAA+TGG + Chr8:82090132-82090151 MsG0880047112.01.T01:intron 30.0%
AACCAAATATTCGGAAAAGT+TGG - Chr8:82090359-82090378 None:intergenic 30.0%
AAGGACCAAAACCAAATATT+CGG - Chr8:82090368-82090387 None:intergenic 30.0%
AATGTTGACATCTGTAATGA+GGG - Chr8:82091114-82091133 None:intergenic 30.0%
ATGTGCTTACAATTTACAGT+TGG + Chr8:82090498-82090517 MsG0880047112.01.T01:intron 30.0%
ATTATACTTGAAGCCTTGAT+TGG - Chr8:82089861-82089880 None:intergenic 30.0%
CAACAAAGTAACAAACTTAC+TGG - Chr8:82090261-82090280 None:intergenic 30.0%
CCCCAACTTATGTTAATATT+TGG - Chr8:82090770-82090789 None:intergenic 30.0%
GTGAACATTTCTGATAAAAC+CGG + Chr8:82091150-82091169 MsG0880047112.01.T01:CDS 30.0%
TAAGAATTGTGAAGATGTGA+AGG - Chr8:82091340-82091359 None:intergenic 30.0%
TAAGCACATTTCAGAACATT+GGG - Chr8:82090487-82090506 None:intergenic 30.0%
TCTTGTAGATATCTTCCATT+TGG + Chr8:82089943-82089962 MsG0880047112.01.T01:intron 30.0%
TGAACATTTCTGATAAAACC+GGG + Chr8:82091151-82091170 MsG0880047112.01.T01:CDS 30.0%
TTGGTCCTTAATGTTTAAGA+AGG + Chr8:82090379-82090398 MsG0880047112.01.T01:intron 30.0%
! ACTCCTCTTATTGCATTTTA+AGG + Chr8:82090841-82090860 MsG0880047112.01.T01:intron 30.0%
! GAAGATATTTTATATCCGTG+TGG + Chr8:82089747-82089766 MsG0880047112.01.T01:CDS 30.0%
! TAGCCTTAAAATGCAATAAG+AGG - Chr8:82090847-82090866 None:intergenic 30.0%
!! CTTTTCCGAATATTTGGTTT+TGG + Chr8:82090360-82090379 MsG0880047112.01.T01:intron 30.0%
!! GGTTTTATCAGAAATGTTCA+CGG - Chr8:82091151-82091170 None:intergenic 30.0%
!! TGCTGTGTTGTTAAATCTTT+TGG + Chr8:82090028-82090047 MsG0880047112.01.T01:intron 30.0%
!!! ATTTTAAGGCTAACTGTGTT+TGG + Chr8:82090855-82090874 MsG0880047112.01.T01:intron 30.0%
!!! TTTTAAGGCTAACTGTGTTT+GGG + Chr8:82090856-82090875 MsG0880047112.01.T01:intron 30.0%
AAGCACATTTCAGAACATTG+GGG - Chr8:82090486-82090505 None:intergenic 35.0%
CAAAGTAACAAACTTACTGG+TGG - Chr8:82090258-82090277 None:intergenic 35.0%
CAAATATTCGGAAAAGTTGG+CGG - Chr8:82090356-82090375 None:intergenic 35.0%
CAATGTTGACATCTGTAATG+AGG - Chr8:82091115-82091134 None:intergenic 35.0%
CTCATTACAGATGTCAACAT+TGG + Chr8:82091113-82091132 MsG0880047112.01.T01:CDS 35.0%
GAACATTTCTGATAAAACCG+GGG + Chr8:82091152-82091171 MsG0880047112.01.T01:CDS 35.0%
GTAAGCACATTTCAGAACAT+TGG - Chr8:82090488-82090507 None:intergenic 35.0%
TAACAACACAGCAGTTAACA+TGG - Chr8:82090021-82090040 None:intergenic 35.0%
TAGACGGTTCAACTTTCAAA+TGG + Chr8:82090221-82090240 MsG0880047112.01.T01:CDS 35.0%
TGAAGATGTGAAGGATTTGA+AGG - Chr8:82091331-82091350 None:intergenic 35.0%
TGGATTCATTTCCAGAAATC+AGG - Chr8:82091217-82091236 None:intergenic 35.0%
TGTAGATATCTTCCATTTGG+CGG + Chr8:82089946-82089965 MsG0880047112.01.T01:intron 35.0%
TTATAGGTTGTGATGACTAC+TGG + Chr8:82091021-82091040 MsG0880047112.01.T01:intron 35.0%
TTATCAGAAATGTTCACGGA+TGG - Chr8:82091147-82091166 None:intergenic 35.0%
TTCAACTTTCAAATGGCAGT+TGG + Chr8:82090228-82090247 MsG0880047112.01.T01:CDS 35.0%
! ACTTTTGAGCCTGATAAACT+TGG - Chr8:82091194-82091213 None:intergenic 35.0%
! ATATCCCCTATACATTTTCG+CGG - Chr8:82089976-82089995 None:intergenic 35.0%
! CAATGAGTTGAGTTAGTAAG+AGG - Chr8:82090996-82091015 None:intergenic 35.0%
AACCCTAATGAGACCAATCA+AGG + Chr8:82089845-82089864 MsG0880047112.01.T01:CDS 40.0%
ACAGATGTCAACATTGGAAG+TGG + Chr8:82091119-82091138 MsG0880047112.01.T01:CDS 40.0%
AGGAAAACATGTCAGGACAT+TGG - Chr8:82090418-82090437 None:intergenic 40.0%
AGGGACCGAAACCAAATATT+AGG - Chr8:82090438-82090457 None:intergenic 40.0%
ATCTGTAATGAGGGAACGAT+AGG - Chr8:82091105-82091124 None:intergenic 40.0%
GAAAACATGTCAGGACATTG+GGG - Chr8:82090416-82090435 None:intergenic 40.0%
GCGACAATTCATACAACACA+AGG + Chr8:82091045-82091064 MsG0880047112.01.T01:CDS 40.0%
GGAAAACATGTCAGGACATT+GGG - Chr8:82090417-82090436 None:intergenic 40.0%
GGATATGTTTGCTTCATACG+AGG + Chr8:82089990-82090009 MsG0880047112.01.T01:CDS 40.0%
TCAGAAGGACCAAGTTTATC+AGG + Chr8:82091182-82091201 MsG0880047112.01.T01:CDS 40.0%
TCGGTCCCTGATGTTTAAAA+AGG + Chr8:82090449-82090468 MsG0880047112.01.T01:intron 40.0%
TCTGATAAAACCGGGGAAAT+AGG + Chr8:82091159-82091178 MsG0880047112.01.T01:CDS 40.0%
TTAGGGTTAGGTCCATCTAA+TGG - Chr8:82089833-82089852 None:intergenic 40.0%
! CACTTGCAATGCTTGTTAGA+CGG + Chr8:82090205-82090224 MsG0880047112.01.T01:CDS 40.0%
! CGCCAACTTTTCCGAATATT+TGG + Chr8:82090354-82090373 MsG0880047112.01.T01:intron 40.0%
! GTTCTAACTTGTCAACTGTC+AGG + Chr8:82090957-82090976 MsG0880047112.01.T01:intron 40.0%
!! AAGCCTTGATTGGTCTCATT+AGG - Chr8:82089851-82089870 None:intergenic 40.0%
!! AGCCTTGATTGGTCTCATTA+GGG - Chr8:82089850-82089869 None:intergenic 40.0%
!! GACTCTCTTCCTTTTGAGAA+AGG - Chr8:82091304-82091323 None:intergenic 40.0%
!! TGATTGGTCTCATTAGGGTT+AGG - Chr8:82089845-82089864 None:intergenic 40.0%
AAGGCTAACTGTGTTTGGGA+TGG + Chr8:82090860-82090879 MsG0880047112.01.T01:intron 45.0%
AGAACTTGCCATTCAGCACA+TGG - Chr8:82090942-82090961 None:intergenic 45.0%
AGATATCTTCCATTTGGCGG+AGG + Chr8:82089949-82089968 MsG0880047112.01.T01:intron 45.0%
AGTCAGCGATACTATGAACG+TGG + Chr8:82091452-82091471 MsG0880047112.01.T01:three_prime_UTR 45.0%
CCATCTAATGGCCATCTTTC+AGG - Chr8:82089821-82089840 None:intergenic 45.0%
CCTGAAAGATGGCCATTAGA+TGG + Chr8:82089818-82089837 MsG0880047112.01.T01:CDS 45.0%
GATATCTTCCATTTGGCGGA+GGG + Chr8:82089950-82089969 MsG0880047112.01.T01:intron 45.0%
GGCTCAAAAGTCCTGATTTC+TGG + Chr8:82091203-82091222 MsG0880047112.01.T01:exon 45.0%
TCAGCATCATTCCACAGTGT+TGG - Chr8:82089788-82089807 None:intergenic 45.0%
TCATGCTACCATGTGCTGAA+TGG + Chr8:82090931-82090950 MsG0880047112.01.T01:intron 45.0%
TGTAATGAGGGAACGATAGG+AGG - Chr8:82091102-82091121 None:intergenic 45.0%
! GTAGCATGAAAGCGTGTTTG+CGG - Chr8:82090920-82090939 None:intergenic 45.0%
AACCGGGGAAATAGGTCAGA+AGG + Chr8:82091167-82091186 MsG0880047112.01.T01:CDS 50.0%
AGGGCCGCGAAAATGTATAG+GGG + Chr8:82089969-82089988 MsG0880047112.01.T01:CDS 50.0%
CACTAATCCGACGAGCTAGT+TGG + Chr8:82090056-82090075 MsG0880047112.01.T01:intron 50.0%
GAGGGCCGCGAAAATGTATA+GGG + Chr8:82089968-82089987 MsG0880047112.01.T01:CDS 50.0%
GTCCTTCTGACCTATTTCCC+CGG - Chr8:82091172-82091191 None:intergenic 50.0%
TGGTTCTCCAACTAGCTCGT+CGG - Chr8:82090066-82090085 None:intergenic 50.0%
! CAACTAGCTCGTCGGATTAG+TGG - Chr8:82090058-82090077 None:intergenic 50.0%
ACTGCGATGCAGGTTCCACA+CGG - Chr8:82089765-82089784 None:intergenic 55.0%
GGAGGGCCGCGAAAATGTAT+AGG + Chr8:82089967-82089986 MsG0880047112.01.T01:CDS 55.0%
TGCATCGCAGTCCAACACTG+TGG + Chr8:82089774-82089793 MsG0880047112.01.T01:CDS 55.0%
! ACAGTGTTGGACTGCGATGC+AGG - Chr8:82089775-82089794 None:intergenic 55.0%
! GCATGAAAGCGTGTTTGCGG+TGG - Chr8:82090917-82090936 None:intergenic 55.0%
TTTCGCGGCCCTCCGCCAAA+TGG - Chr8:82089961-82089980 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 82089737 82091542 82089737 ID=MsG0880047112.01;Name=MsG0880047112.01
Chr8 mRNA 82089737 82091542 82089737 ID=MsG0880047112.01.T01;Parent=MsG0880047112.01;Name=MsG0880047112.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.75|1|1|1|4|324|151
Chr8 exon 82089737 82089873 82089737 ID=MsG0880047112.01.T01:exon:35147;Parent=MsG0880047112.01.T01
Chr8 exon 82089951 82090011 82089951 ID=MsG0880047112.01.T01:exon:35148;Parent=MsG0880047112.01.T01
Chr8 exon 82090195 82090260 82090195 ID=MsG0880047112.01.T01:exon:35149;Parent=MsG0880047112.01.T01
Chr8 exon 82091027 82091542 82091027 ID=MsG0880047112.01.T01:exon:35150;Parent=MsG0880047112.01.T01
Chr8 CDS 82089737 82089873 82089737 ID=MsG0880047112.01.T01:cds;Parent=MsG0880047112.01.T01
Chr8 CDS 82089951 82090011 82089951 ID=MsG0880047112.01.T01:cds;Parent=MsG0880047112.01.T01
Chr8 CDS 82090195 82090260 82090195 ID=MsG0880047112.01.T01:cds;Parent=MsG0880047112.01.T01
Chr8 CDS 82091027 82091218 82091027 ID=MsG0880047112.01.T01:cds;Parent=MsG0880047112.01.T01
Chr8 three_prime_UTR 82091219 82091542 82091219 ID=MsG0880047112.01.T01:three_prime_utr;Parent=MsG0880047112.01.T01
Gene Sequence

>MsG0880047112.01.T01

TTGCAGAGGAGAAGATATTTTATATCCGTGTGGAACCTGCATCGCAGTCCAACACTGTGGAATGATGCTGATAAATTTGAACCTGAAAGATGGCCATTAGATGGACCTAACCCTAATGAGACCAATCAAGGCTTCAAATATCTTCCATTTGGCGGAGGGCCGCGAAAATGTATAGGGGATATGTTTGCTTCATACGAGGTTGTAGTAGCACTTGCAATGCTTGTTAGACGGTTCAACTTTCAAATGGCAGTTGGAGCTCCACCAGTTGTGATGACTACTGGAGCGACAATTCATACAACACAAGGTTTGAACATGACTGTAACACGCAGAATAAAACCTCCTATCGTTCCCTCATTACAGATGTCAACATTGGAAGTGGATCCATCCGTGAACATTTCTGATAAAACCGGGGAAATAGGTCAGAAGGACCAAGTTTATCAGGCTCAAAAGTCCTGA

Protein sequence

>MsG0880047112.01.T01

LQRRRYFISVWNLHRSPTLWNDADKFEPERWPLDGPNPNETNQGFKYLPFGGGPRKCIGDMFASYEVVVALAMLVRRFNFQMAVGAPPVVMTTGATIHTTQGLNMTVTRRIKPPIVPSLQMSTLEVDPSVNISDKTGEIGQKDQVYQAQKS*