Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008866.01.T01 | XP_013463810.1 | 56.863 | 102 | 12 | 1 | 1 | 70 | 362 | 463 | 2.42E-25 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008866.01.T01 | Q8VY01 | 66.129 | 62 | 20 | 1 | 9 | 69 | 401 | 462 | 5.56E-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008866.01.T01 | A0A072VI90 | 56.863 | 102 | 12 | 1 | 1 | 70 | 362 | 463 | 1.15e-25 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0280008866.01 | 0.802969 | 4.358757e-49 | 2.164149e-46 |
| MsG0180000145.01 | MsG0280008866.01 | 0.805560 | 1.258431e-49 | 6.678558e-47 |
| MsG0180000470.01 | MsG0280008866.01 | 0.813888 | 2.037458e-51 | 1.346920e-48 |
| MsG0180001892.01 | MsG0280008866.01 | 0.805856 | 1.090605e-49 | 5.832537e-47 |
| MsG0180003741.01 | MsG0280008866.01 | 0.808475 | 3.040909e-50 | 1.740465e-47 |
| MsG0180003951.01 | MsG0280008866.01 | 0.808455 | 3.071409e-50 | 1.757012e-47 |
| MsG0180004389.01 | MsG0280008866.01 | 0.823140 | 1.626226e-53 | 1.388593e-50 |
| MsG0180004765.01 | MsG0280008866.01 | 0.817493 | 3.204591e-52 | 2.337350e-49 |
| MsG0180004928.01 | MsG0280008866.01 | 0.804199 | 2.422035e-49 | 1.241151e-46 |
| MsG0180005153.01 | MsG0280008866.01 | 0.818210 | 2.207965e-52 | 1.642313e-49 |
| MsG0180006017.01 | MsG0280008866.01 | 0.802593 | 5.212262e-49 | 2.563378e-46 |
| MsG0180006224.01 | MsG0280008866.01 | 0.809874 | 1.525333e-50 | 9.059575e-48 |
| MsG0280006405.01 | MsG0280008866.01 | 0.816350 | 5.785049e-52 | 4.089551e-49 |
| MsG0280006469.01 | MsG0280008866.01 | 0.806505 | 7.963244e-50 | 4.329627e-47 |
| MsG0280007432.01 | MsG0280008866.01 | 0.834574 | 2.769958e-56 | 3.300917e-53 |
| MsG0280007955.01 | MsG0280008866.01 | 0.865593 | 5.277682e-65 | 1.726693e-61 |
| MsG0280008112.01 | MsG0280008866.01 | 0.802584 | 5.233513e-49 | 2.573194e-46 |
| MsG0280008377.01 | MsG0280008866.01 | 0.822019 | 2.963651e-53 | 2.450908e-50 |
| MsG0280008391.01 | MsG0280008866.01 | 0.805817 | 1.111325e-49 | 5.937272e-47 |
| MsG0280008457.01 | MsG0280008866.01 | 0.806068 | 9.844100e-50 | 5.292963e-47 |
| MsG0280008866.01 | MsG0280010148.01 | 0.810724 | 9.998987e-51 | 6.073514e-48 |
| MsG0280008866.01 | MsG0280010349.01 | 0.824331 | 8.551706e-54 | 7.551242e-51 |
| MsG0280008866.01 | MsG0280010366.01 | 0.826100 | 3.264243e-54 | 3.031960e-51 |
| MsG0280008866.01 | MsG0280010489.01 | 0.816803 | 4.580568e-52 | 3.278205e-49 |
| MsG0280008866.01 | MsG0280010722.01 | 0.820176 | 7.875588e-53 | 6.186947e-50 |
| MsG0280008866.01 | MsG0280010778.01 | 0.809301 | 2.024605e-50 | 1.184393e-47 |
| MsG0280008866.01 | MsG0380011501.01 | 0.801287 | 9.667266e-49 | 4.599271e-46 |
| MsG0280008866.01 | MsG0380011609.01 | 0.818980 | 1.476713e-52 | 1.122199e-49 |
| MsG0280008866.01 | MsG0380013183.01 | 0.818871 | 1.562909e-52 | 1.184032e-49 |
| MsG0280008866.01 | MsG0380013475.01 | 0.808816 | 2.571730e-50 | 1.485046e-47 |
| MsG0280008866.01 | MsG0380014537.01 | 0.809266 | 2.059910e-50 | 1.203909e-47 |
| MsG0280008866.01 | MsG0380014948.01 | 0.810399 | 1.175353e-50 | 7.077187e-48 |
| MsG0280008866.01 | MsG0380015555.01 | 0.833664 | 4.682599e-56 | 5.429168e-53 |
| MsG0280008866.01 | MsG0380015875.01 | 0.800889 | 1.165913e-48 | 5.491618e-46 |
| MsG0280008866.01 | MsG0380016970.01 | 0.815337 | 9.735754e-52 | 6.693778e-49 |
| MsG0280008866.01 | MsG0380017589.01 | 0.803263 | 3.789990e-49 | 1.895957e-46 |
| MsG0280008866.01 | MsG0480018653.01 | 0.827641 | 1.398132e-54 | 1.357653e-51 |
| MsG0280008866.01 | MsG0480018985.01 | 0.810181 | 1.309863e-50 | 7.842152e-48 |
| MsG0280008866.01 | MsG0480020832.01 | 0.803309 | 3.706680e-49 | 1.856472e-46 |
| MsG0280008866.01 | MsG0480021056.01 | 0.812921 | 3.323839e-51 | 2.140325e-48 |
| MsG0280008866.01 | MsG0480021189.01 | 0.825481 | 4.578755e-54 | 4.178403e-51 |
| MsG0280008866.01 | MsG0480021465.01 | 0.804470 | 2.127270e-49 | 1.097707e-46 |
| MsG0280008866.01 | MsG0480023172.01 | 0.807055 | 6.092355e-50 | 3.359752e-47 |
| MsG0280008866.01 | MsG0480023489.01 | 0.819981 | 8.728029e-53 | 6.819511e-50 |
| MsG0280008866.01 | MsG0480023601.01 | 0.804139 | 2.493003e-49 | 1.275571e-46 |
| MsG0280008866.01 | MsG0580024197.01 | 0.810361 | 1.197633e-50 | 7.204431e-48 |
| MsG0280008866.01 | MsG0580025332.01 | 0.812168 | 4.856214e-51 | 3.065253e-48 |
| MsG0280008866.01 | MsG0580025587.01 | 0.817626 | 2.990624e-52 | 2.189165e-49 |
| MsG0280008866.01 | MsG0580025987.01 | 0.817687 | 2.898200e-52 | 2.125063e-49 |
| MsG0280008866.01 | MsG0580027091.01 | 0.806402 | 8.372747e-50 | 4.540187e-47 |
| MsG0280008866.01 | MsG0580027925.01 | 0.826417 | 2.744475e-54 | 2.572386e-51 |
| MsG0280008866.01 | MsG0580029236.01 | 0.856125 | 3.972909e-62 | 9.384127e-59 |
| MsG0280008866.01 | MsG0680030328.01 | 0.815931 | 7.177225e-52 | 5.015542e-49 |
| MsG0280008866.01 | MsG0680031431.01 | 0.800197 | 1.613663e-48 | 7.467596e-46 |
| MsG0280008866.01 | MsG0680031621.01 | 0.821829 | 3.279417e-53 | 2.697673e-50 |
| MsG0280008866.01 | MsG0680034230.01 | 0.814548 | 1.456328e-51 | 9.801192e-49 |
| MsG0280008866.01 | MsG0780036593.01 | 0.800713 | 1.266936e-48 | 5.940168e-46 |
| MsG0280008866.01 | MsG0780036602.01 | 0.805655 | 1.201866e-49 | 6.394201e-47 |
| MsG0280008866.01 | MsG0780037054.01 | 0.816655 | 4.945464e-52 | 3.525202e-49 |
| MsG0280008866.01 | MsG0780037141.01 | 0.804179 | 2.446278e-49 | 1.252920e-46 |
| MsG0280008866.01 | MsG0780038488.01 | 0.810486 | 1.125544e-50 | 6.793217e-48 |
| MsG0280008866.01 | MsG0780039170.01 | 0.833837 | 4.238379e-56 | 4.940446e-53 |
| MsG0280008866.01 | MsG0780039443.01 | 0.821803 | 3.324808e-53 | 2.732958e-50 |
| MsG0280008866.01 | MsG0780040888.01 | 0.811438 | 7.001233e-51 | 4.333974e-48 |
| MsG0280008866.01 | MsG0780041391.01 | 0.823921 | 1.067624e-53 | 9.319166e-51 |
| MsG0280008866.01 | MsG0780041440.01 | 0.802000 | 6.904047e-49 | 3.344352e-46 |
| MsG0280008866.01 | MsG0880043037.01 | 0.822140 | 2.778048e-53 | 2.305502e-50 |
| MsG0280008866.01 | MsG0880043937.01 | 0.806128 | 9.560122e-50 | 5.148214e-47 |
| MsG0280008866.01 | MsG0880044728.01 | 0.800969 | 1.123035e-48 | 5.300350e-46 |
| MsG0280008866.01 | MsG0880045111.01 | 0.813094 | 3.045435e-51 | 1.970147e-48 |
| MsG0280008866.01 | MsG0880047473.01 | 0.820281 | 7.452671e-53 | 5.871318e-50 |
| MsG0280008866.01 | MsG0880047764.01 | 0.817498 | 3.197120e-52 | 2.332196e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008866.01.T01 | MTR_2g449850 | 56.863 | 102 | 12 | 1 | 1 | 70 | 362 | 463 | 2.93e-29 | 108 |
| MsG0280008866.01.T01 | MTR_3g434850 | 52.427 | 103 | 17 | 1 | 1 | 71 | 354 | 456 | 1.29e-27 | 103 |
| MsG0280008866.01.T01 | MTR_3g498755 | 70.175 | 57 | 17 | 0 | 15 | 71 | 391 | 447 | 2.73e-25 | 97.1 |
| MsG0280008866.01.T01 | MTR_1g040370 | 52.475 | 101 | 16 | 1 | 1 | 69 | 315 | 415 | 5.96e-25 | 95.9 |
| MsG0280008866.01.T01 | MTR_8g099930 | 68.421 | 57 | 18 | 0 | 13 | 69 | 406 | 462 | 6.23e-24 | 93.6 |
| MsG0280008866.01.T01 | MTR_7g021130 | 67.273 | 55 | 18 | 0 | 15 | 69 | 403 | 457 | 3.26e-23 | 91.7 |
| MsG0280008866.01.T01 | MTR_1g102130 | 44.554 | 101 | 24 | 1 | 1 | 69 | 390 | 490 | 2.44e-22 | 89.4 |
| MsG0280008866.01.T01 | MTR_3g090150 | 53.571 | 56 | 26 | 0 | 14 | 69 | 408 | 463 | 1.51e-18 | 78.6 |
| MsG0280008866.01.T01 | MTR_3g090130 | 50.000 | 60 | 30 | 0 | 14 | 73 | 401 | 460 | 1.20e-17 | 75.9 |
| MsG0280008866.01.T01 | MTR_5g072570 | 51.724 | 58 | 28 | 0 | 15 | 72 | 407 | 464 | 3.30e-17 | 74.7 |
| MsG0280008866.01.T01 | MTR_2g039800 | 66.667 | 45 | 15 | 0 | 24 | 68 | 50 | 94 | 7.10e-16 | 66.6 |
| MsG0280008866.01.T01 | MTR_2g062990 | 46.667 | 60 | 31 | 1 | 12 | 71 | 406 | 464 | 1.97e-14 | 66.6 |
| MsG0280008866.01.T01 | MTR_2g062980 | 47.368 | 57 | 29 | 1 | 15 | 71 | 409 | 464 | 2.37e-14 | 66.6 |
| MsG0280008866.01.T01 | MTR_2g063000 | 45.000 | 60 | 32 | 1 | 12 | 71 | 376 | 434 | 1.39e-13 | 64.3 |
| MsG0280008866.01.T01 | MTR_2g063000 | 45.000 | 60 | 32 | 1 | 12 | 71 | 407 | 465 | 1.40e-13 | 64.3 |
| MsG0280008866.01.T01 | MTR_2g081620 | 45.000 | 60 | 32 | 1 | 12 | 71 | 407 | 465 | 2.67e-13 | 63.5 |
| MsG0280008866.01.T01 | MTR_7g013790 | 55.556 | 54 | 23 | 1 | 18 | 71 | 414 | 466 | 1.77e-12 | 61.2 |
| MsG0280008866.01.T01 | MTR_2g012860 | 48.148 | 54 | 27 | 1 | 18 | 71 | 423 | 475 | 4.35e-12 | 60.1 |
| MsG0280008866.01.T01 | MTR_3g079620 | 43.860 | 57 | 31 | 1 | 14 | 70 | 444 | 499 | 3.07e-11 | 57.8 |
| MsG0280008866.01.T01 | MTR_1g095560 | 37.705 | 61 | 37 | 1 | 12 | 72 | 400 | 459 | 3.17e-11 | 57.8 |
| MsG0280008866.01.T01 | MTR_1g095540 | 35.593 | 59 | 37 | 1 | 12 | 70 | 400 | 457 | 6.47e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008866.01.T01 | AT2G33530 | 66.129 | 62 | 20 | 1 | 9 | 69 | 401 | 462 | 5.67e-22 | 88.2 |
| MsG0280008866.01.T01 | AT1G28110 | 62.903 | 62 | 22 | 1 | 9 | 69 | 397 | 458 | 1.35e-21 | 87.0 |
| MsG0280008866.01.T01 | AT1G28110 | 62.903 | 62 | 22 | 1 | 9 | 69 | 397 | 458 | 1.35e-21 | 87.0 |
| MsG0280008866.01.T01 | AT5G42240 | 56.364 | 55 | 24 | 0 | 15 | 69 | 410 | 464 | 1.62e-17 | 75.5 |
| MsG0280008866.01.T01 | AT1G43780 | 52.459 | 61 | 29 | 0 | 12 | 72 | 413 | 473 | 1.83e-16 | 72.8 |
| MsG0280008866.01.T01 | AT5G42230 | 50.847 | 59 | 29 | 0 | 15 | 73 | 406 | 464 | 2.07e-16 | 72.4 |
| MsG0280008866.01.T01 | AT5G42230 | 50.847 | 59 | 29 | 0 | 15 | 73 | 406 | 464 | 2.07e-16 | 72.4 |
| MsG0280008866.01.T01 | AT2G12480 | 41.791 | 67 | 39 | 0 | 13 | 79 | 401 | 467 | 3.06e-16 | 72.0 |
| MsG0280008866.01.T01 | AT2G12480 | 41.791 | 67 | 39 | 0 | 13 | 79 | 377 | 443 | 3.69e-16 | 71.6 |
| MsG0280008866.01.T01 | AT2G12480 | 41.791 | 67 | 39 | 0 | 13 | 79 | 375 | 441 | 3.76e-16 | 71.6 |
| MsG0280008866.01.T01 | AT4G30610 | 55.769 | 52 | 22 | 1 | 18 | 69 | 412 | 462 | 1.19e-14 | 67.4 |
| MsG0280008866.01.T01 | AT2G12480 | 41.176 | 68 | 39 | 1 | 13 | 79 | 375 | 442 | 1.61e-14 | 67.0 |
| MsG0280008866.01.T01 | AT2G24010 | 59.615 | 52 | 20 | 1 | 18 | 69 | 412 | 462 | 2.58e-14 | 66.6 |
| MsG0280008866.01.T01 | AT2G24010 | 59.615 | 52 | 20 | 1 | 18 | 69 | 416 | 466 | 2.63e-14 | 66.6 |
| MsG0280008866.01.T01 | AT2G24010 | 59.615 | 52 | 20 | 1 | 18 | 69 | 401 | 451 | 3.21e-14 | 66.2 |
| MsG0280008866.01.T01 | AT4G30810 | 44.286 | 70 | 37 | 2 | 14 | 83 | 408 | 475 | 7.27e-13 | 62.4 |
| MsG0280008866.01.T01 | AT5G08260 | 44.615 | 65 | 35 | 1 | 7 | 70 | 413 | 477 | 7.94e-13 | 62.4 |
| MsG0280008866.01.T01 | AT2G05850 | 41.818 | 55 | 32 | 0 | 15 | 69 | 430 | 484 | 2.80e-12 | 60.8 |
| MsG0280008866.01.T01 | AT3G63470 | 45.902 | 61 | 33 | 0 | 14 | 74 | 442 | 502 | 3.51e-12 | 60.5 |
| MsG0280008866.01.T01 | AT2G24000 | 52.941 | 51 | 23 | 1 | 18 | 68 | 348 | 397 | 4.68e-12 | 60.1 |
| MsG0280008866.01.T01 | AT2G24000 | 52.941 | 51 | 23 | 1 | 18 | 68 | 411 | 460 | 7.05e-12 | 59.7 |
| MsG0280008866.01.T01 | AT3G52010 | 41.379 | 58 | 34 | 0 | 12 | 69 | 427 | 484 | 8.35e-12 | 59.3 |
| MsG0280008866.01.T01 | AT1G11080 | 48.214 | 56 | 28 | 1 | 14 | 69 | 435 | 489 | 1.39e-11 | 58.9 |
| MsG0280008866.01.T01 | AT1G11080 | 48.214 | 56 | 28 | 1 | 14 | 69 | 435 | 489 | 1.46e-11 | 58.5 |
| MsG0280008866.01.T01 | AT3G52000 | 41.379 | 58 | 34 | 0 | 12 | 69 | 422 | 479 | 2.39e-11 | 58.2 |
| MsG0280008866.01.T01 | AT3G17180 | 40.580 | 69 | 36 | 1 | 2 | 70 | 413 | 476 | 5.33e-11 | 57.0 |
| MsG0280008866.01.T01 | AT1G61130 | 46.429 | 56 | 29 | 1 | 14 | 69 | 406 | 460 | 5.42e-11 | 57.0 |
| MsG0280008866.01.T01 | AT3G02110 | 50.877 | 57 | 27 | 1 | 13 | 69 | 416 | 471 | 7.79e-11 | 56.6 |
Find 31 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGCGCAGGCTGAGAAAA+TGG | 0.282066 | 2:+40191138 | None:intergenic |
| CACTTGTTAAATCAGGGGTT+CGG | 0.299311 | 2:-40191576 | MsG0280008866.01.T01:CDS |
| TTCTCAGCCTGCGCGAGCTT+TGG | 0.334267 | 2:-40191133 | MsG0280008866.01.T01:CDS |
| TTTATCATTTGCAACAATAA+GGG | 0.347974 | 2:-40191178 | MsG0280008866.01.T01:CDS |
| TTAGGGCCACTTGTTAAATC+AGG | 0.357193 | 2:-40191583 | MsG0280008866.01.T01:CDS |
| AACCCTACAATCTCTATGTT+AGG | 0.358096 | 2:-40191601 | MsG0280008866.01.T01:exon |
| CCAACTATTAGTGAATTTGT+TGG | 0.379336 | 2:-40191075 | MsG0280008866.01.T01:CDS |
| GGGTTCGGGTTCTAGCTTAC+AGG | 0.380620 | 2:-40191561 | MsG0280008866.01.T01:intron |
| GCAGGATGGACGGAGGGTTA+TGG | 0.411732 | 2:-40191207 | MsG0280008866.01.T01:CDS |
| CCAACAAATTCACTAATAGT+TGG | 0.411985 | 2:+40191075 | None:intergenic |
| TATTTAATTGTTCAGGTGGC+AGG | 0.438998 | 2:-40191225 | MsG0280008866.01.T01:intron |
| GCGAGCTTTGGTACTATTCA+AGG | 0.441740 | 2:-40191121 | MsG0280008866.01.T01:CDS |
| ACTTGTTAAATCAGGGGTTC+GGG | 0.495035 | 2:-40191575 | MsG0280008866.01.T01:CDS |
| GGTACTATTCAAGGCATTTG+TGG | 0.519304 | 2:-40191112 | MsG0280008866.01.T01:CDS |
| ACCCTACAATCTCTATGTTA+GGG | 0.521246 | 2:-40191600 | MsG0280008866.01.T01:exon |
| GGCCCTAACATAGAGATTGT+AGG | 0.521971 | 2:+40191598 | None:intergenic |
| GCCCTAACATAGAGATTGTA+GGG | 0.527268 | 2:+40191599 | None:intergenic |
| CTATTCAAGGCATTTGTGGA+AGG | 0.529889 | 2:-40191108 | MsG0280008866.01.T01:CDS |
| CTCGTATAGAGTTTGGTATG+AGG | 0.542677 | 2:-40191346 | MsG0280008866.01.T01:intron |
| TAGGGCCACTTGTTAAATCA+GGG | 0.543896 | 2:-40191582 | MsG0280008866.01.T01:CDS |
| CGAACCCCTGATTTAACAAG+TGG | 0.550763 | 2:+40191577 | None:intergenic |
| AGTTTGGTATGAGGGTAGCC+AGG | 0.551338 | 2:-40191337 | MsG0280008866.01.T01:intron |
| TTATCATTTGCAACAATAAG+GGG | 0.561572 | 2:-40191177 | MsG0280008866.01.T01:CDS |
| TGTTCAGGTGGCAGGATGGA+CGG | 0.564756 | 2:-40191217 | MsG0280008866.01.T01:intron |
| TCGTATAGAGTTTGGTATGA+GGG | 0.567116 | 2:-40191345 | MsG0280008866.01.T01:intron |
| TATTCAAGGCATTTGTGGAA+GGG | 0.571085 | 2:-40191107 | MsG0280008866.01.T01:CDS |
| TCAGGTGGCAGGATGGACGG+AGG | 0.589632 | 2:-40191214 | MsG0280008866.01.T01:intron |
| CAGGTGGCAGGATGGACGGA+GGG | 0.591184 | 2:-40191213 | MsG0280008866.01.T01:CDS |
| AATAGTACCAAAGCTCGCGC+AGG | 0.591962 | 2:+40191126 | None:intergenic |
| AGGGCCACTTGTTAAATCAG+GGG | 0.612046 | 2:-40191581 | MsG0280008866.01.T01:CDS |
| TAATTGTTCAGGTGGCAGGA+TGG | 0.638374 | 2:-40191221 | MsG0280008866.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTGCTAAAGAATAAAA+TGG | - | Chr2:40191189-40191208 | MsG0280008866.01.T01:CDS | 15.0% |
| !!! | ATTTTGATATTTAATTGTTC+AGG | - | Chr2:40191824-40191843 | MsG0280008866.01.T01:intron | 15.0% |
| !! | ATGTATATAAGTAACTAAGT+TGG | + | Chr2:40191540-40191559 | None:intergenic | 20.0% |
| !! | TATCCTATTAAATATTTACC+TGG | + | Chr2:40191740-40191759 | None:intergenic | 20.0% |
| !! | TTATTTACACTTGTAATTAG+TGG | + | Chr2:40191255-40191274 | None:intergenic | 20.0% |
| !! | TTTATCATTTGCAACAATAA+GGG | - | Chr2:40191878-40191897 | MsG0280008866.01.T01:intron | 20.0% |
| !!! | TTTTATCATTTGCAACAATA+AGG | - | Chr2:40191877-40191896 | MsG0280008866.01.T01:intron | 20.0% |
| ! | CTTATAGAAAAATCGAGAAA+TGG | - | Chr2:40191078-40191097 | MsG0280008866.01.T01:CDS | 25.0% |
| ! | GAGAAAAAAACAAAAAGCTT+TGG | + | Chr2:40191597-40191616 | None:intergenic | 25.0% |
| ! | TAGCCAGGTAAATATTTAAT+AGG | - | Chr2:40191734-40191753 | MsG0280008866.01.T01:intron | 25.0% |
| ! | TTATCATTTGCAACAATAAG+GGG | - | Chr2:40191879-40191898 | MsG0280008866.01.T01:intron | 25.0% |
| ! | TTGATATTTAATTGTTCAGG+TGG | - | Chr2:40191827-40191846 | MsG0280008866.01.T01:intron | 25.0% |
| !! | ATATGACATTGATTGATAGT+AGG | + | Chr2:40191569-40191588 | None:intergenic | 25.0% |
| !! | TATATAAGTAACTAAGTTGG+AGG | + | Chr2:40191537-40191556 | None:intergenic | 25.0% |
| AATGGTTAAGGAAAGAGAAA+TGG | - | Chr2:40191096-40191115 | MsG0280008866.01.T01:CDS | 30.0% | |
| ACTGTAACTAATTGTTGAAG+TGG | - | Chr2:40191289-40191308 | MsG0280008866.01.T01:intron | 30.0% | |
| CCAACAAATTCACTAATAGT+TGG | + | Chr2:40191984-40192003 | None:intergenic | 30.0% | |
| CCAACTATTAGTGAATTTGT+TGG | - | Chr2:40191981-40192000 | MsG0280008866.01.T01:five_prime_UTR | 30.0% | |
| GAAAAATCGAGAAATGGTTA+AGG | - | Chr2:40191084-40191103 | MsG0280008866.01.T01:CDS | 30.0% | |
| ! | CTCTAAAAGACGGAAAATAT+TGG | + | Chr2:40191406-40191425 | None:intergenic | 30.0% |
| ! | GGTATACGATTTTCAAAATC+TGG | - | Chr2:40191430-40191449 | MsG0280008866.01.T01:intron | 30.0% |
| ! | TATACCAGAACTCTAAAAGA+CGG | + | Chr2:40191416-40191435 | None:intergenic | 30.0% |
| AACCCTACAATCTCTATGTT+AGG | - | Chr2:40191455-40191474 | MsG0280008866.01.T01:intron | 35.0% | |
| ACCCTACAATCTCTATGTTA+GGG | - | Chr2:40191456-40191475 | MsG0280008866.01.T01:intron | 35.0% | |
| TATTTAATTGTTCAGGTGGC+AGG | - | Chr2:40191831-40191850 | MsG0280008866.01.T01:intron | 35.0% | |
| TCGTATAGAGTTTGGTATGA+GGG | - | Chr2:40191711-40191730 | MsG0280008866.01.T01:intron | 35.0% | |
| TCTAAACCTGTACATCAACA+TGG | + | Chr2:40191148-40191167 | None:intergenic | 35.0% | |
| ! | TATTCAAGGCATTTGTGGAA+GGG | - | Chr2:40191949-40191968 | MsG0280008866.01.T01:intron | 35.0% |
| !!! | AAATACCCTTTTTTGCGACT+CGG | - | Chr2:40191641-40191660 | MsG0280008866.01.T01:intron | 35.0% |
| !!! | TTTTCCGTCTTTTAGAGTTC+TGG | - | Chr2:40191409-40191428 | MsG0280008866.01.T01:intron | 35.0% |
| CAACAGACTCGTATAGAGTT+TGG | - | Chr2:40191703-40191722 | MsG0280008866.01.T01:intron | 40.0% | |
| CTCGTATAGAGTTTGGTATG+AGG | - | Chr2:40191710-40191729 | MsG0280008866.01.T01:intron | 40.0% | |
| CTGATACCATGTTGATGTAC+AGG | - | Chr2:40191139-40191158 | MsG0280008866.01.T01:CDS | 40.0% | |
| GCCCTAACATAGAGATTGTA+GGG | + | Chr2:40191460-40191479 | None:intergenic | 40.0% | |
| TCGGTCGTTAATAAAGGGAT+TGG | - | Chr2:40191660-40191679 | MsG0280008866.01.T01:intron | 40.0% | |
| ! | ACTTGTTAAATCAGGGGTTC+GGG | - | Chr2:40191481-40191500 | MsG0280008866.01.T01:intron | 40.0% |
| ! | CACTTGTTAAATCAGGGGTT+CGG | - | Chr2:40191480-40191499 | MsG0280008866.01.T01:intron | 40.0% |
| ! | CTATTCAAGGCATTTGTGGA+AGG | - | Chr2:40191948-40191967 | MsG0280008866.01.T01:intron | 40.0% |
| ! | GGTACTATTCAAGGCATTTG+TGG | - | Chr2:40191944-40191963 | MsG0280008866.01.T01:intron | 40.0% |
| ! | GTTAATAAAGGGATTGGCGA+AGG | - | Chr2:40191666-40191685 | MsG0280008866.01.T01:intron | 40.0% |
| ! | TAGGGCCACTTGTTAAATCA+GGG | - | Chr2:40191474-40191493 | MsG0280008866.01.T01:intron | 40.0% |
| ! | TTAGGGCCACTTGTTAAATC+AGG | - | Chr2:40191473-40191492 | MsG0280008866.01.T01:intron | 40.0% |
| !!! | TTGTTTTTTTCTCCCTGCAG+TGG | - | Chr2:40191604-40191623 | MsG0280008866.01.T01:exon | 40.0% |
| AACGACCGAGTCGCAAAAAA+GGG | + | Chr2:40191649-40191668 | None:intergenic | 45.0% | |
| CGAACCCCTGATTTAACAAG+TGG | + | Chr2:40191482-40191501 | None:intergenic | 45.0% | |
| GGCCCTAACATAGAGATTGT+AGG | + | Chr2:40191461-40191480 | None:intergenic | 45.0% | |
| TAACGACCGAGTCGCAAAAA+AGG | + | Chr2:40191650-40191669 | None:intergenic | 45.0% | |
| TAATTGTTCAGGTGGCAGGA+TGG | - | Chr2:40191835-40191854 | MsG0280008866.01.T01:intron | 45.0% | |
| ! | AGGGCCACTTGTTAAATCAG+GGG | - | Chr2:40191475-40191494 | MsG0280008866.01.T01:intron | 45.0% |
| ! | GCGAGCTTTGGTACTATTCA+AGG | - | Chr2:40191935-40191954 | MsG0280008866.01.T01:intron | 45.0% |
| ! | TATCAGAGCTCATCTAGCTC+TGG | + | Chr2:40191125-40191144 | None:intergenic | 45.0% |
| !! | GCGACTCGGTCGTTAATAAA+GGG | - | Chr2:40191655-40191674 | MsG0280008866.01.T01:intron | 45.0% |
| !! | TGCGACTCGGTCGTTAATAA+AGG | - | Chr2:40191654-40191673 | MsG0280008866.01.T01:intron | 45.0% |
| AATAGTACCAAAGCTCGCGC+AGG | + | Chr2:40191933-40191952 | None:intergenic | 50.0% | |
| AGTTTGGTATGAGGGTAGCC+AGG | - | Chr2:40191719-40191738 | MsG0280008866.01.T01:intron | 50.0% | |
| GAGTCTGTTGCAGTCAATCC+AGG | + | Chr2:40191693-40191712 | None:intergenic | 50.0% | |
| AGAGTCCTGATCTCCACTGC+AGG | + | Chr2:40191620-40191639 | None:intergenic | 55.0% | |
| GAGTCCTGATCTCCACTGCA+GGG | + | Chr2:40191619-40191638 | None:intergenic | 55.0% | |
| TGTTCAGGTGGCAGGATGGA+CGG | - | Chr2:40191839-40191858 | MsG0280008866.01.T01:intron | 55.0% | |
| TTCTCCCTGCAGTGGAGATC+AGG | - | Chr2:40191612-40191631 | MsG0280008866.01.T01:five_prime_UTR | 55.0% | |
| ! | AAAGGGATTGGCGAAGGACC+TGG | - | Chr2:40191672-40191691 | MsG0280008866.01.T01:intron | 55.0% |
| !! | GGGTTCGGGTTCTAGCTTAC+AGG | - | Chr2:40191495-40191514 | MsG0280008866.01.T01:intron | 55.0% |
| GCAGGATGGACGGAGGGTTA+TGG | - | Chr2:40191849-40191868 | MsG0280008866.01.T01:intron | 60.0% | |
| GCTCGCGCAGGCTGAGAAAA+TGG | + | Chr2:40191921-40191940 | None:intergenic | 60.0% | |
| TTCTCAGCCTGCGCGAGCTT+TGG | - | Chr2:40191923-40191942 | MsG0280008866.01.T01:intron | 60.0% | |
| CAGGTGGCAGGATGGACGGA+GGG | - | Chr2:40191843-40191862 | MsG0280008866.01.T01:intron | 65.0% | |
| TCAGGTGGCAGGATGGACGG+AGG | - | Chr2:40191842-40191861 | MsG0280008866.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 40191050 | 40192028 | 40191050 | ID=MsG0280008866.01;Name=MsG0280008866.01 |
| Chr2 | mRNA | 40191050 | 40192028 | 40191050 | ID=MsG0280008866.01.T01;Parent=MsG0280008866.01;Name=MsG0280008866.01.T01;_AED=0.50;_eAED=0.66;_QI=96|0|0|1|0.33|0.5|4|0|83 |
| Chr2 | exon | 40191979 | 40192028 | 40191979 | ID=MsG0280008866.01.T01:exon:1714;Parent=MsG0280008866.01.T01 |
| Chr2 | exon | 40191562 | 40191654 | 40191562 | ID=MsG0280008866.01.T01:exon:1713;Parent=MsG0280008866.01.T01 |
| Chr2 | exon | 40191338 | 40191359 | 40191338 | ID=MsG0280008866.01.T01:exon:1712;Parent=MsG0280008866.01.T01 |
| Chr2 | exon | 40191050 | 40191232 | 40191050 | ID=MsG0280008866.01.T01:exon:1711;Parent=MsG0280008866.01.T01 |
| Chr2 | five_prime_UTR | 40191979 | 40192028 | 40191979 | ID=MsG0280008866.01.T01:five_prime_utr;Parent=MsG0280008866.01.T01 |
| Chr2 | five_prime_UTR | 40191609 | 40191654 | 40191609 | ID=MsG0280008866.01.T01:five_prime_utr;Parent=MsG0280008866.01.T01 |
| Chr2 | CDS | 40191562 | 40191608 | 40191562 | ID=MsG0280008866.01.T01:cds;Parent=MsG0280008866.01.T01 |
| Chr2 | CDS | 40191338 | 40191359 | 40191338 | ID=MsG0280008866.01.T01:cds;Parent=MsG0280008866.01.T01 |
| Chr2 | CDS | 40191050 | 40191232 | 40191050 | ID=MsG0280008866.01.T01:cds;Parent=MsG0280008866.01.T01 |
| Gene Sequence |
| Protein sequence |
