Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017511.01.T01 | AFK44795.1 | 58.824 | 119 | 17 | 2 | 47 | 133 | 167 | 285 | 4.55E-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017511.01.T01 | I3SX03 | 58.824 | 119 | 17 | 2 | 47 | 133 | 167 | 285 | 2.17e-12 | 72.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0380017511.01 | 0.812974 | 3.235977e-51 | 2.086724e-48 |
| MsG0080048687.01 | MsG0380017511.01 | 0.819260 | 1.275099e-52 | 9.763698e-50 |
| MsG0080048968.01 | MsG0380017511.01 | 0.842147 | 3.088339e-58 | 4.639729e-55 |
| MsG0080049135.01 | MsG0380017511.01 | 0.807502 | 4.898036e-50 | 2.732785e-47 |
| MsG0180000023.01 | MsG0380017511.01 | 0.802139 | 6.464572e-49 | 3.142591e-46 |
| MsG0180000339.01 | MsG0380017511.01 | 0.806711 | 7.202465e-50 | 3.936714e-47 |
| MsG0180000611.01 | MsG0380017511.01 | 0.861140 | 1.264440e-63 | 3.541212e-60 |
| MsG0180001235.01 | MsG0380017511.01 | 0.808495 | 3.010914e-50 | 1.724168e-47 |
| MsG0180001599.01 | MsG0380017511.01 | 0.817154 | 3.819969e-52 | 2.760396e-49 |
| MsG0180002283.01 | MsG0380017511.01 | 0.832431 | 9.488536e-56 | 1.060314e-52 |
| MsG0180003379.01 | MsG0380017511.01 | 0.839926 | 1.183023e-57 | 1.658596e-54 |
| MsG0180003793.01 | MsG0380017511.01 | 0.823649 | 1.236148e-53 | 1.070828e-50 |
| MsG0180004009.01 | MsG0380017511.01 | 0.835717 | 1.426204e-56 | 1.758741e-53 |
| MsG0180004016.01 | MsG0380017511.01 | 0.874170 | 8.321829e-68 | 3.708730e-64 |
| MsG0180004128.01 | MsG0380017511.01 | 0.830340 | 3.103135e-55 | 3.260214e-52 |
| MsG0180004130.01 | MsG0380017511.01 | 0.812222 | 4.725485e-51 | 2.987285e-48 |
| MsG0180004767.01 | MsG0380017511.01 | 0.824733 | 6.878506e-54 | 6.145226e-51 |
| MsG0180004861.01 | MsG0380017511.01 | 0.823099 | 1.662222e-53 | 1.417660e-50 |
| MsG0180005268.01 | MsG0380017511.01 | 0.813860 | 2.066681e-51 | 1.365140e-48 |
| MsG0180006046.01 | MsG0380017511.01 | 0.806436 | 8.233004e-50 | 4.468416e-47 |
| MsG0280010801.01 | MsG0380017511.01 | 0.809987 | 1.441737e-50 | 8.588968e-48 |
| MsG0380011614.01 | MsG0380017511.01 | 0.850462 | 1.671442e-60 | 3.276629e-57 |
| MsG0380013579.01 | MsG0380017511.01 | 0.811673 | 6.222659e-51 | 3.875579e-48 |
| MsG0380014885.01 | MsG0380017511.01 | 0.822743 | 2.011859e-53 | 1.698711e-50 |
| MsG0380014908.01 | MsG0380017511.01 | 0.806918 | 6.514118e-50 | 3.579571e-47 |
| MsG0380015512.01 | MsG0380017511.01 | 0.804013 | 2.647951e-49 | 1.350504e-46 |
| MsG0380015607.01 | MsG0380017511.01 | 0.811625 | 6.377025e-51 | 3.966757e-48 |
| MsG0380015818.01 | MsG0380017511.01 | 0.828587 | 8.275643e-55 | 8.261128e-52 |
| MsG0380016117.01 | MsG0380017511.01 | 0.803899 | 2.796756e-49 | 1.422254e-46 |
| MsG0380016604.01 | MsG0380017511.01 | 0.806745 | 7.084319e-50 | 3.875534e-47 |
| MsG0380017279.01 | MsG0380017511.01 | 0.820256 | 7.552429e-53 | 5.945768e-50 |
| MsG0380017476.01 | MsG0380017511.01 | 0.911436 | 6.095386e-83 | 1.305672e-78 |
| MsG0380017511.01 | MsG0380017512.01 | 0.818637 | 1.767105e-52 | 1.329959e-49 |
| MsG0380017511.01 | MsG0380017719.01 | 0.812170 | 4.850584e-51 | 3.061940e-48 |
| MsG0380017511.01 | MsG0480018235.01 | 0.837664 | 4.547378e-57 | 5.948975e-54 |
| MsG0380017511.01 | MsG0480018292.01 | 0.830799 | 2.395435e-55 | 2.550781e-52 |
| MsG0380017511.01 | MsG0480021432.01 | 0.844828 | 5.935152e-59 | 9.700559e-56 |
| MsG0380017511.01 | MsG0480021832.01 | 0.827625 | 1.411113e-54 | 1.369529e-51 |
| MsG0380017511.01 | MsG0480022292.01 | 0.807126 | 5.886496e-50 | 3.252009e-47 |
| MsG0380017511.01 | MsG0480022672.01 | 0.827429 | 1.571831e-54 | 1.517135e-51 |
| MsG0380017511.01 | MsG0480022678.01 | 0.805396 | 1.362287e-49 | 7.199292e-47 |
| MsG0380017511.01 | MsG0480022897.01 | 0.860167 | 2.494192e-63 | 6.755594e-60 |
| MsG0380017511.01 | MsG0480023143.01 | 0.805402 | 1.358566e-49 | 7.180871e-47 |
| MsG0380017511.01 | MsG0480023149.01 | 0.818980 | 1.476771e-52 | 1.122237e-49 |
| MsG0380017511.01 | MsG0480023240.01 | 0.869961 | 2.090226e-66 | 7.991683e-63 |
| MsG0380017511.01 | MsG0480023387.01 | 0.810441 | 1.151135e-50 | 6.939194e-48 |
| MsG0380017511.01 | MsG0480023396.01 | 0.804271 | 2.340795e-49 | 1.201713e-46 |
| MsG0380017511.01 | MsG0480023447.01 | 0.811175 | 7.984536e-51 | 4.908254e-48 |
| MsG0380017511.01 | MsG0480023559.01 | 0.832244 | 1.056003e-55 | 1.173425e-52 |
| MsG0380017511.01 | MsG0580024084.01 | 0.812258 | 4.641015e-51 | 2.936677e-48 |
| MsG0380017511.01 | MsG0580024191.01 | 0.813582 | 2.379903e-51 | 1.560258e-48 |
| MsG0380017511.01 | MsG0580024536.01 | 0.812898 | 3.361752e-51 | 2.163529e-48 |
| MsG0380017511.01 | MsG0580028597.01 | 0.834095 | 3.652785e-56 | 4.290470e-53 |
| MsG0380017511.01 | MsG0580029231.01 | 0.809238 | 2.088103e-50 | 1.219546e-47 |
| MsG0380017511.01 | MsG0580029283.01 | 0.853629 | 2.105544e-61 | 4.578569e-58 |
| MsG0380017511.01 | MsG0580029783.01 | 0.826227 | 3.045056e-54 | 2.838628e-51 |
| MsG0380017511.01 | MsG0580029801.01 | 0.820299 | 7.382189e-53 | 5.818589e-50 |
| MsG0380017511.01 | MsG0580030003.01 | 0.862502 | 4.842453e-64 | 1.421449e-60 |
| MsG0380017511.01 | MsG0680031000.01 | 0.801777 | 7.673715e-49 | 3.696093e-46 |
| MsG0380017511.01 | MsG0680031051.01 | 0.811962 | 5.384762e-51 | 3.379832e-48 |
| MsG0380017511.01 | MsG0680031699.01 | 0.836363 | 9.779083e-57 | 1.229684e-53 |
| MsG0380017511.01 | MsG0680031828.01 | 0.816077 | 6.658309e-52 | 4.671833e-49 |
| MsG0380017511.01 | MsG0680032075.01 | 0.818112 | 2.322893e-52 | 1.723194e-49 |
| MsG0380017511.01 | MsG0680035306.01 | 0.809179 | 2.150673e-50 | 1.254035e-47 |
| MsG0380017511.01 | MsG0680035854.01 | 0.826403 | 2.765347e-54 | 2.590935e-51 |
| MsG0380017511.01 | MsG0780036240.01 | 0.821208 | 4.562843e-53 | 3.688652e-50 |
| MsG0380017511.01 | MsG0780038400.01 | 0.804839 | 1.781936e-49 | 9.283851e-47 |
| MsG0380017511.01 | MsG0780039340.01 | 0.827605 | 1.426339e-54 | 1.383565e-51 |
| MsG0380017511.01 | MsG0780039570.01 | 0.812710 | 3.697716e-51 | 2.367924e-48 |
| MsG0380017511.01 | MsG0780039943.01 | 0.841377 | 4.929767e-58 | 7.230212e-55 |
| MsG0380017511.01 | MsG0780040070.01 | 0.818217 | 2.200070e-52 | 1.636753e-49 |
| MsG0380017511.01 | MsG0780040110.01 | 0.810436 | 1.153660e-50 | 6.953480e-48 |
| MsG0380017511.01 | MsG0780040125.01 | 0.805322 | 1.412018e-49 | 7.447978e-47 |
| MsG0380017511.01 | MsG0780040519.01 | 0.813279 | 2.774188e-51 | 1.803813e-48 |
| MsG0380017511.01 | MsG0780040569.01 | 0.824183 | 9.265093e-54 | 8.147189e-51 |
| MsG0380017511.01 | MsG0780041006.01 | 0.816844 | 4.483844e-52 | 3.212743e-49 |
| MsG0380017511.01 | MsG0780041223.01 | 0.826311 | 2.908348e-54 | 2.717643e-51 |
| MsG0380017511.01 | MsG0880042033.01 | 0.848762 | 4.984194e-60 | 9.243707e-57 |
| MsG0380017511.01 | MsG0880042399.01 | -0.816250 | 6.092640e-52 | 4.295117e-49 |
| MsG0380017511.01 | MsG0880043194.01 | 0.828743 | 7.586649e-55 | 7.607323e-52 |
| MsG0380017511.01 | MsG0880044990.01 | 0.802461 | 5.549917e-49 | 2.720214e-46 |
| MsG0380017511.01 | MsG0880045329.01 | 0.801117 | 1.047517e-48 | 4.962396e-46 |
| MsG0380017511.01 | MsG0880045656.01 | 0.865536 | 5.499863e-65 | 1.795720e-61 |
| MsG0380017511.01 | MsG0880045684.01 | 0.830681 | 2.560338e-55 | 2.716922e-52 |
| MsG0380017511.01 | MsG0880046068.01 | 0.835075 | 2.072214e-56 | 2.506223e-53 |
| MsG0380017511.01 | MsG0880046074.01 | 0.808585 | 2.881427e-50 | 1.653819e-47 |
| MsG0380017511.01 | MsG0880046177.01 | 0.831137 | 1.979076e-55 | 2.128519e-52 |
| MsG0380017511.01 | MsG0880047428.01 | 0.818754 | 1.661586e-52 | 1.254672e-49 |
| MsG0280007441.01 | MsG0380017511.01 | 0.814904 | 1.214681e-51 | 8.253150e-49 |
| MsG0280007847.01 | MsG0380017511.01 | 0.840994 | 6.217612e-58 | 9.010190e-55 |
| MsG0280008118.01 | MsG0380017511.01 | 0.818755 | 1.660862e-52 | 1.254157e-49 |
| MsG0280009141.01 | MsG0380017511.01 | 0.824671 | 7.114850e-54 | 6.345243e-51 |
| MsG0280009554.01 | MsG0380017511.01 | 0.824516 | 7.736985e-54 | 6.868671e-51 |
| MsG0280009575.01 | MsG0380017511.01 | 0.836453 | 9.273129e-57 | 1.169209e-53 |
| MsG0280010185.01 | MsG0380017511.01 | 0.809528 | 1.810179e-50 | 1.065351e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017511.01.T01 | MTR_3g108090 | 58.824 | 119 | 17 | 2 | 47 | 133 | 189 | 307 | 5.51e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTTCTTGGCATTCT+TGG | 0.174540 | 3:+97187426 | None:intergenic |
| AGCAGCGTCCATTTCTTTAC+TGG | 0.341268 | 3:+97187265 | None:intergenic |
| CAGGATAAGAAAGGTGTAGA+TGG | 0.373922 | 3:-97187487 | MsG0380017511.01.T01:CDS |
| GGGTTTGTCCTCACTGGTTG+AGG | 0.379223 | 3:+97189016 | None:intergenic |
| GTTGAGGGTCGGAAAATTGA+TGG | 0.390978 | 3:+97189032 | None:intergenic |
| GGTTTGTCCTCACTGGTTGA+GGG | 0.425859 | 3:+97189017 | None:intergenic |
| TGCTAGAGCTGCTGCTCAAG+AGG | 0.430832 | 3:-97187243 | MsG0380017511.01.T01:CDS |
| GCACAGGTTGTTGGTTGTAA+TGG | 0.445016 | 3:+97187171 | None:intergenic |
| TTCTTTACCGCACAGGTTGT+TGG | 0.457072 | 3:+97187162 | None:intergenic |
| TGTATTTGCAGGTGCACCTC+AGG | 0.467621 | 3:-97187506 | MsG0380017511.01.T01:intron |
| CGTTAGACTCTTCACCTCCT+TGG | 0.470055 | 3:+97187388 | None:intergenic |
| GGTGTAGATGGGGATGTAGA+TGG | 0.477288 | 3:-97187475 | MsG0380017511.01.T01:CDS |
| ATGCCAAGAAGAAGAAAAGA+AGG | 0.489841 | 3:-97187420 | MsG0380017511.01.T01:CDS |
| AGCAAGGTTCTTTACCGCAC+AGG | 0.490107 | 3:+97187155 | None:intergenic |
| GTTCTTCTCTTTCTTCTTAG+CGG | 0.490710 | 3:+97187193 | None:intergenic |
| CACCGTTGAATGCAACCTCA+TGG | 0.509050 | 3:-97189105 | MsG0380017511.01.T01:CDS |
| CTGCTCAAGAGGCTGCTGCA+AGG | 0.511826 | 3:-97187232 | MsG0380017511.01.T01:CDS |
| AAATTGATGGGGCGGTGCGG+TGG | 0.523186 | 3:+97189045 | None:intergenic |
| AGGATAAGAAAGGTGTAGAT+GGG | 0.528793 | 3:-97187486 | MsG0380017511.01.T01:CDS |
| AAAGAAGGATAAAGCTTCCA+AGG | 0.529938 | 3:-97187405 | MsG0380017511.01.T01:CDS |
| TTGAGGGTCGGAAAATTGAT+GGG | 0.531380 | 3:+97189033 | None:intergenic |
| GCCCATGAGGTTGCATTCAA+CGG | 0.535338 | 3:+97189103 | None:intergenic |
| AGGCTGCTGCAAGGAACGCA+AGG | 0.544412 | 3:-97187223 | MsG0380017511.01.T01:CDS |
| TGCAACCTCATGGGCTGATG+TGG | 0.545900 | 3:-97189095 | MsG0380017511.01.T01:CDS |
| ACCGTTGAATGCAACCTCAT+GGG | 0.552821 | 3:-97189104 | MsG0380017511.01.T01:CDS |
| TCTACACCTTTCTTATCCTG+AGG | 0.571217 | 3:+97187490 | None:intergenic |
| TGTCCTCACTGGTTGAGGGT+CGG | 0.571428 | 3:+97189021 | None:intergenic |
| GGAAAATTGATGGGGCGGTG+CGG | 0.586176 | 3:+97189042 | None:intergenic |
| GGTGCACCTCAGGATAAGAA+AGG | 0.599338 | 3:-97187496 | MsG0380017511.01.T01:CDS |
| GGATAAGAAAGGTGTAGATG+GGG | 0.604616 | 3:-97187485 | MsG0380017511.01.T01:CDS |
| GGGTCGGAAAATTGATGGGG+CGG | 0.656574 | 3:+97189037 | None:intergenic |
| GTCATCCACATCAGCCCATG+AGG | 0.661130 | 3:+97189090 | None:intergenic |
| TGAGGGTCGGAAAATTGATG+GGG | 0.695646 | 3:+97189034 | None:intergenic |
| TGAGGTTGCATTCAACGGTG+CGG | 0.696515 | 3:+97189108 | None:intergenic |
| ATTACAACCAACAACCTGTG+CGG | 0.714310 | 3:-97187169 | MsG0380017511.01.T01:CDS |
| GAAGGATAAAGCTTCCAAGG+AGG | 0.726948 | 3:-97187402 | MsG0380017511.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAATTATAAATGC+TGG | + | Chr3:97188676-97188695 | None:intergenic | 15.0% |
| !! | AAAATTGCAAAGTAAAAATC+TGG | + | Chr3:97188161-97188180 | None:intergenic | 20.0% |
| !! | AGTTTATCATTACTATTCAA+AGG | + | Chr3:97188027-97188046 | None:intergenic | 20.0% |
| !! | TGAATAGTAATGATAAACTT+TGG | - | Chr3:97188028-97188047 | MsG0380017511.01.T01:intron | 20.0% |
| !! | TTACATTATTTGTAGGATTA+TGG | - | Chr3:97188478-97188497 | MsG0380017511.01.T01:intron | 20.0% |
| !!! | AACATTTTGAAGATTATCTT+AGG | + | Chr3:97187815-97187834 | None:intergenic | 20.0% |
| !!! | AATAAATAGGTTTTGTTACA+TGG | - | Chr3:97187953-97187972 | MsG0380017511.01.T01:intron | 20.0% |
| !!! | ATAAATAGGTTTTGTTACAT+GGG | - | Chr3:97187954-97187973 | MsG0380017511.01.T01:intron | 20.0% |
| !!! | TAAGTATTTGAAAAGCTTTT+CGG | + | Chr3:97187778-97187797 | None:intergenic | 20.0% |
| !!! | TTTACTTTGCAATTTTTAAC+AGG | - | Chr3:97188165-97188184 | MsG0380017511.01.T01:intron | 20.0% |
| ! | ACAATAACAAAAAAACATCC+AGG | + | Chr3:97187358-97187377 | None:intergenic | 25.0% |
| ! | ACACAATTATCAAAAAGATC+AGG | + | Chr3:97187901-97187920 | None:intergenic | 25.0% |
| ! | GAAAAAATCCAGTAAAGAAA+TGG | - | Chr3:97189008-97189027 | MsG0380017511.01.T01:intron | 25.0% |
| ! | TATCTTAGGATAAAACATGT+TGG | + | Chr3:97187801-97187820 | None:intergenic | 25.0% |
| ! | TGTCTATGCGATAAATAAAT+AGG | - | Chr3:97187940-97187959 | MsG0380017511.01.T01:intron | 25.0% |
| !! | ACAAGTTGAAAATAAGGTAT+AGG | - | Chr3:97187735-97187754 | MsG0380017511.01.T01:intron | 25.0% |
| !! | ATGAACACAAGTTGAAAATA+AGG | - | Chr3:97187729-97187748 | MsG0380017511.01.T01:intron | 25.0% |
| !! | TTGATAATTGTGTTTCTTTG+AGG | - | Chr3:97187908-97187927 | MsG0380017511.01.T01:intron | 25.0% |
| !! | TTGATGACTATTGAGATTAA+GGG | - | Chr3:97187506-97187525 | MsG0380017511.01.T01:intron | 25.0% |
| !!! | ATGTCATTTTTCTGTTTGTT+TGG | - | Chr3:97187412-97187431 | MsG0380017511.01.T01:CDS | 25.0% |
| !!! | GAAGAAGATATTTTAGATGA+AGG | - | Chr3:97188199-97188218 | MsG0380017511.01.T01:intron | 25.0% |
| !!! | TAAATAGGTTTTGTTACATG+GGG | - | Chr3:97187955-97187974 | MsG0380017511.01.T01:intron | 25.0% |
| !!! | TATGGTTTATTTTTGAGTTC+AGG | - | Chr3:97188496-97188515 | MsG0380017511.01.T01:intron | 25.0% |
| ATTCGCAAAATTGTATTTGC+AGG | - | Chr3:97188764-97188783 | MsG0380017511.01.T01:intron | 30.0% | |
| CTGCATCTTACATTATTTGT+AGG | - | Chr3:97188471-97188490 | MsG0380017511.01.T01:intron | 30.0% | |
| TCAGCGAAAAAAGATGAAAA+TGG | + | Chr3:97188615-97188634 | None:intergenic | 30.0% | |
| TTGTGTGTTTATTGCTTGAA+TGG | - | Chr3:97188114-97188133 | MsG0380017511.01.T01:intron | 30.0% | |
| TTTATGTGCTTACTTTGCTT+TGG | - | Chr3:97187852-97187871 | MsG0380017511.01.T01:intron | 30.0% | |
| ! | TATCCTTCTTTTCTTCTTCT+TGG | + | Chr3:97188867-97188886 | None:intergenic | 30.0% |
| !! | ATTTTCAACATCAGAAGTGT+TGG | + | Chr3:97188925-97188944 | None:intergenic | 30.0% |
| !! | GTTGATGACTATTGAGATTA+AGG | - | Chr3:97187505-97187524 | MsG0380017511.01.T01:intron | 30.0% |
| !! | TGTTGTTGTTTATTGATTCC+TGG | - | Chr3:97187337-97187356 | MsG0380017511.01.T01:intron | 30.0% |
| !!! | TTTTCAACATCAGAAGTGTT+GGG | + | Chr3:97188924-97188943 | None:intergenic | 30.0% |
| AAAGAAGGATAAAGCTTCCA+AGG | - | Chr3:97188876-97188895 | MsG0380017511.01.T01:intron | 35.0% | |
| AATAATGTAAGATGCAGCTC+TGG | + | Chr3:97188468-97188487 | None:intergenic | 35.0% | |
| AATGAAAGCAATGATGGTCA+AGG | - | Chr3:97188415-97188434 | MsG0380017511.01.T01:intron | 35.0% | |
| ACACAGAATGAAAGCAATGA+TGG | - | Chr3:97188409-97188428 | MsG0380017511.01.T01:intron | 35.0% | |
| ATGCCAAGAAGAAGAAAAGA+AGG | - | Chr3:97188861-97188880 | MsG0380017511.01.T01:intron | 35.0% | |
| GTTCTTCTCTTTCTTCTTAG+CGG | + | Chr3:97189091-97189110 | None:intergenic | 35.0% | |
| TAAATACCTGGGATTCATCT+TGG | + | Chr3:97188441-97188460 | None:intergenic | 35.0% | |
| TCACTTTATGTGCTTAGCTA+AGG | - | Chr3:97187386-97187405 | MsG0380017511.01.T01:intron | 35.0% | |
| TCAGGTATCCTAATAAGAAC+AGG | + | Chr3:97187883-97187902 | None:intergenic | 35.0% | |
| TGAACAAACCTCAAAATGCT+CGG | + | Chr3:97187289-97187308 | None:intergenic | 35.0% | |
| TGGTTATGCCTGTTCTTATT+AGG | - | Chr3:97187872-97187891 | MsG0380017511.01.T01:intron | 35.0% | |
| TTCTGATGTTGAAAATGCAG+AGG | - | Chr3:97188929-97188948 | MsG0380017511.01.T01:intron | 35.0% | |
| TTTCTTCTTCTTGGCATTCT+TGG | + | Chr3:97188858-97188877 | None:intergenic | 35.0% | |
| ! | AGGATAAGAAAGGTGTAGAT+GGG | - | Chr3:97188795-97188814 | MsG0380017511.01.T01:intron | 35.0% |
| ! | GCTCTGGATAATAAATACCT+GGG | + | Chr3:97188452-97188471 | None:intergenic | 35.0% |
| !! | AGCTCTGGATAATAAATACC+TGG | + | Chr3:97188453-97188472 | None:intergenic | 35.0% |
| !! | TATTTTAGATGAAGGTGACG+AGG | - | Chr3:97188207-97188226 | MsG0380017511.01.T01:intron | 35.0% |
| !!! | CTGGTCTTTTTTTCTCTGTT+TGG | - | Chr3:97188558-97188577 | MsG0380017511.01.T01:intron | 35.0% |
| !!! | TTTCATCTTTTTTCGCTGAC+AGG | - | Chr3:97188616-97188635 | MsG0380017511.01.T01:intron | 35.0% |
| AAGCACATAAAGTGAGCAAC+AGG | + | Chr3:97187381-97187400 | None:intergenic | 40.0% | |
| ATGCATTCGTTCTACACTAC+TGG | - | Chr3:97188539-97188558 | MsG0380017511.01.T01:intron | 40.0% | |
| ATTACAACCAACAACCTGTG+CGG | - | Chr3:97189112-97189131 | MsG0380017511.01.T01:CDS | 40.0% | |
| CCAAAAAGGAAGGAAGAAGA+AGG | - | Chr3:97188346-97188365 | MsG0380017511.01.T01:intron | 40.0% | |
| CTAGATCTTTGAGCAAAAGC+AGG | + | Chr3:97188590-97188609 | None:intergenic | 40.0% | |
| GAACAAACCTCAAAATGCTC+GGG | + | Chr3:97187288-97187307 | None:intergenic | 40.0% | |
| TAGAACGAATGCATGAGCAA+CGG | + | Chr3:97188533-97188552 | None:intergenic | 40.0% | |
| TCTACACCTTTCTTATCCTG+AGG | + | Chr3:97188794-97188813 | None:intergenic | 40.0% | |
| TGATGTTGAAAATGCAGAGG+AGG | - | Chr3:97188932-97188951 | MsG0380017511.01.T01:intron | 40.0% | |
| TTGAGGGTCGGAAAATTGAT+GGG | + | Chr3:97187251-97187270 | None:intergenic | 40.0% | |
| ! | CAGGATAAGAAAGGTGTAGA+TGG | - | Chr3:97188794-97188813 | MsG0380017511.01.T01:intron | 40.0% |
| ! | CCTTCTTCTTCCTTCCTTTT+TGG | + | Chr3:97188349-97188368 | None:intergenic | 40.0% |
| ! | GGATAAGAAAGGTGTAGATG+GGG | - | Chr3:97188796-97188815 | MsG0380017511.01.T01:intron | 40.0% |
| !! | CTTTTTGGAGAGTTGACGTT+CGG | + | Chr3:97188334-97188353 | None:intergenic | 40.0% |
| !! | TGAGGCTCTTTAGCTGATTT+TGG | - | Chr3:97188382-97188401 | MsG0380017511.01.T01:intron | 40.0% |
| ACCGTTGAATGCAACCTCAT+GGG | - | Chr3:97187177-97187196 | MsG0380017511.01.T01:CDS | 45.0% | |
| AGCAGCGTCCATTTCTTTAC+TGG | + | Chr3:97189019-97189038 | None:intergenic | 45.0% | |
| CAAGGAGGTGAAGAGTCTAA+CGG | - | Chr3:97188894-97188913 | MsG0380017511.01.T01:intron | 45.0% | |
| CGAACGTCAACTCTCCAAAA+AGG | - | Chr3:97188332-97188351 | MsG0380017511.01.T01:intron | 45.0% | |
| CGTCAACTCTCCAAAAAGGA+AGG | - | Chr3:97188336-97188355 | MsG0380017511.01.T01:intron | 45.0% | |
| GAAGGAACTTGAAGAGCTTG+AGG | - | Chr3:97188364-97188383 | MsG0380017511.01.T01:intron | 45.0% | |
| GAAGGATAAAGCTTCCAAGG+AGG | - | Chr3:97188879-97188898 | MsG0380017511.01.T01:intron | 45.0% | |
| GTGCATGTCAATCTAGATGC+AGG | - | Chr3:97188710-97188729 | MsG0380017511.01.T01:intron | 45.0% | |
| GTTGAGGGTCGGAAAATTGA+TGG | + | Chr3:97187252-97187271 | None:intergenic | 45.0% | |
| TCAGCATTCTTCTTGACCTC+AGG | + | Chr3:97188288-97188307 | None:intergenic | 45.0% | |
| TGAGGGTCGGAAAATTGATG+GGG | + | Chr3:97187250-97187269 | None:intergenic | 45.0% | |
| TTCTTCTTGACCTCAGGTTC+AGG | + | Chr3:97188282-97188301 | None:intergenic | 45.0% | |
| TTTAGATGAAGGTGACGAGG+AGG | - | Chr3:97188210-97188229 | MsG0380017511.01.T01:intron | 45.0% | |
| ! | GCACAGGTTGTTGGTTGTAA+TGG | + | Chr3:97189113-97189132 | None:intergenic | 45.0% |
| CACCGTTGAATGCAACCTCA+TGG | - | Chr3:97187176-97187195 | MsG0380017511.01.T01:CDS | 50.0% | |
| CACTGTGAAACCTGAACCTG+AGG | - | Chr3:97188269-97188288 | MsG0380017511.01.T01:intron | 50.0% | |
| CGTTAGACTCTTCACCTCCT+TGG | + | Chr3:97188896-97188915 | None:intergenic | 50.0% | |
| GCCCATGAGGTTGCATTCAA+CGG | + | Chr3:97187181-97187200 | None:intergenic | 50.0% | |
| GGTGCACCTCAGGATAAGAA+AGG | - | Chr3:97188785-97188804 | MsG0380017511.01.T01:intron | 50.0% | |
| GGTGTAGATGGGGATGTAGA+TGG | - | Chr3:97188806-97188825 | MsG0380017511.01.T01:intron | 50.0% | |
| TCAAGGCCAAGATGAATCCC+AGG | - | Chr3:97188432-97188451 | MsG0380017511.01.T01:intron | 50.0% | |
| TCAGGTTTCACAGTGTGCTC+TGG | + | Chr3:97188264-97188283 | None:intergenic | 50.0% | |
| TGAAGTTCCAGCTGCACCAA+AGG | - | Chr3:97188305-97188324 | MsG0380017511.01.T01:intron | 50.0% | |
| TGAGGTTGCATTCAACGGTG+CGG | + | Chr3:97187176-97187195 | None:intergenic | 50.0% | |
| TGTATTTGCAGGTGCACCTC+AGG | - | Chr3:97188775-97188794 | MsG0380017511.01.T01:intron | 50.0% | |
| ! | GGACAAACCCGAGCATTTTG+AGG | - | Chr3:97187278-97187297 | MsG0380017511.01.T01:CDS | 50.0% |
| ! | GGTTTGTCCTCACTGGTTGA+GGG | + | Chr3:97187267-97187286 | None:intergenic | 50.0% |
| ! | GTTACATGGGGTGCGCATTT+TGG | - | Chr3:97187967-97187986 | MsG0380017511.01.T01:intron | 50.0% |
| AGTTCCAGCTGCACCAAAGG+AGG | - | Chr3:97188308-97188327 | MsG0380017511.01.T01:intron | 55.0% | |
| AGTTGACGTTCGGCCTCCTT+TGG | + | Chr3:97188324-97188343 | None:intergenic | 55.0% | |
| ATGCTCGGGTTTGTCCTCAC+TGG | + | Chr3:97187274-97187293 | None:intergenic | 55.0% | |
| GGAAAATTGATGGGGCGGTG+CGG | + | Chr3:97187242-97187261 | None:intergenic | 55.0% | |
| GGGTCGGAAAATTGATGGGG+CGG | + | Chr3:97187247-97187266 | None:intergenic | 55.0% | |
| GTCATCCACATCAGCCCATG+AGG | + | Chr3:97187194-97187213 | None:intergenic | 55.0% | |
| TGAAGGTGACGAGGAGGTAG+AGG | - | Chr3:97188216-97188235 | MsG0380017511.01.T01:intron | 55.0% | |
| TGCTAGAGCTGCTGCTCAAG+AGG | - | Chr3:97189038-97189057 | MsG0380017511.01.T01:CDS | 55.0% | |
| TTTCCGACCCTCAACCAGTG+AGG | - | Chr3:97187257-97187276 | MsG0380017511.01.T01:CDS | 55.0% | |
| ! | GGGTTTGTCCTCACTGGTTG+AGG | + | Chr3:97187268-97187287 | None:intergenic | 55.0% |
| ! | TGCAACCTCATGGGCTGATG+TGG | - | Chr3:97187186-97187205 | MsG0380017511.01.T01:CDS | 55.0% |
| ! | TGTCCTCACTGGTTGAGGGT+CGG | + | Chr3:97187263-97187282 | None:intergenic | 55.0% |
| AAATTGATGGGGCGGTGCGG+TGG | + | Chr3:97187239-97187258 | None:intergenic | 60.0% | |
| AGGCTGCTGCAAGGAACGCA+AGG | - | Chr3:97189058-97189077 | MsG0380017511.01.T01:CDS | 60.0% | |
| CTGCTCAAGAGGCTGCTGCA+AGG | - | Chr3:97189049-97189068 | MsG0380017511.01.T01:CDS | 60.0% | |
| ! | TCGGCCTCCTTTGGTGCAGC+TGG | + | Chr3:97188315-97188334 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 97187166 | 97189137 | 97187166 | ID=MsG0380017511.01;Name=MsG0380017511.01 |
| Chr3 | mRNA | 97187166 | 97189137 | 97187166 | ID=MsG0380017511.01.T01;Parent=MsG0380017511.01;Name=MsG0380017511.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|4|0|133 |
| Chr3 | exon | 97189030 | 97189137 | 97189030 | ID=MsG0380017511.01.T01:exon:14118;Parent=MsG0380017511.01.T01 |
| Chr3 | exon | 97188083 | 97188116 | 97188083 | ID=MsG0380017511.01.T01:exon:14119;Parent=MsG0380017511.01.T01 |
| Chr3 | exon | 97187403 | 97187517 | 97187403 | ID=MsG0380017511.01.T01:exon:14120;Parent=MsG0380017511.01.T01 |
| Chr3 | exon | 97187166 | 97187310 | 97187166 | ID=MsG0380017511.01.T01:exon:14121;Parent=MsG0380017511.01.T01 |
| Chr3 | CDS | 97189030 | 97189137 | 97189030 | ID=MsG0380017511.01.T01:cds;Parent=MsG0380017511.01.T01 |
| Chr3 | CDS | 97188083 | 97188116 | 97188083 | ID=MsG0380017511.01.T01:cds;Parent=MsG0380017511.01.T01 |
| Chr3 | CDS | 97187403 | 97187517 | 97187403 | ID=MsG0380017511.01.T01:cds;Parent=MsG0380017511.01.T01 |
| Chr3 | CDS | 97187166 | 97187310 | 97187166 | ID=MsG0380017511.01.T01:cds;Parent=MsG0380017511.01.T01 |
| Gene Sequence |
| Protein sequence |
