Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049135.01.T01 | XP_003589004.1 | 69.697 | 198 | 24 | 2 | 1 | 162 | 79 | 276 | 2.00E-53 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049135.01.T01 | G7I9Z4 | 69.697 | 198 | 24 | 2 | 1 | 162 | 79 | 276 | 9.53e-54 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048197.01 | MsG0080049135.01 | 0.817282 | 3.574388e-52 | 2.591899e-49 |
| MsG0080048383.01 | MsG0080049135.01 | 0.822814 | 1.937215e-53 | 1.638881e-50 |
| MsG0080048687.01 | MsG0080049135.01 | 0.857320 | 1.768821e-62 | 4.348320e-59 |
| MsG0080048843.01 | MsG0080049135.01 | 0.830855 | 2.320950e-55 | 2.475584e-52 |
| MsG0080048968.01 | MsG0080049135.01 | 0.841662 | 4.147483e-58 | 6.136476e-55 |
| MsG0080049135.01 | MsG0180000339.01 | 0.808689 | 2.737826e-50 | 1.575649e-47 |
| MsG0080049135.01 | MsG0180000384.01 | 0.815432 | 9.273323e-52 | 6.392541e-49 |
| MsG0080049135.01 | MsG0180000568.01 | 0.800010 | 1.761025e-48 | 8.111108e-46 |
| MsG0080049135.01 | MsG0180000611.01 | 0.849895 | 2.409839e-60 | 4.637327e-57 |
| MsG0080049135.01 | MsG0180000806.01 | 0.829162 | 6.005010e-55 | 6.096767e-52 |
| MsG0080049135.01 | MsG0180001382.01 | 0.838175 | 3.362429e-57 | 4.467106e-54 |
| MsG0080049135.01 | MsG0180001599.01 | 0.812640 | 3.828855e-51 | 2.447489e-48 |
| MsG0080049135.01 | MsG0180002283.01 | 0.816132 | 6.473023e-52 | 4.548474e-49 |
| MsG0080049135.01 | MsG0180002547.01 | 0.818407 | 1.991891e-52 | 1.489858e-49 |
| MsG0080049135.01 | MsG0180003567.01 | 0.801254 | 9.819288e-49 | 4.667700e-46 |
| MsG0080049135.01 | MsG0180003793.01 | 0.832314 | 1.014524e-55 | 1.129645e-52 |
| MsG0080049135.01 | MsG0180004016.01 | 0.809327 | 1.998398e-50 | 1.169890e-47 |
| MsG0080049135.01 | MsG0180004050.01 | 0.825861 | 3.721497e-54 | 3.433442e-51 |
| MsG0080049135.01 | MsG0180004128.01 | 0.805532 | 1.275632e-49 | 6.764914e-47 |
| MsG0080049135.01 | MsG0180004160.01 | 0.812880 | 3.393706e-51 | 2.182993e-48 |
| MsG0080049135.01 | MsG0180004180.01 | 0.806578 | 7.686693e-50 | 4.186935e-47 |
| MsG0080049135.01 | MsG0180004398.01 | 0.801391 | 9.203817e-49 | 4.390202e-46 |
| MsG0080049135.01 | MsG0180004767.01 | 0.805368 | 1.380575e-49 | 7.290898e-47 |
| MsG0080049135.01 | MsG0180004861.01 | 0.836984 | 6.792719e-57 | 8.702205e-54 |
| MsG0080049135.01 | MsG0180005268.01 | 0.809752 | 1.620006e-50 | 9.591673e-48 |
| MsG0080049135.01 | MsG0180005407.01 | 0.817369 | 3.417294e-52 | 2.483979e-49 |
| MsG0080049135.01 | MsG0180005765.01 | 0.814128 | 1.803718e-51 | 1.200125e-48 |
| MsG0080049135.01 | MsG0180006013.01 | 0.819526 | 1.108915e-52 | 8.554702e-50 |
| MsG0080049135.01 | MsG0180006046.01 | 0.800152 | 1.647991e-48 | 7.617834e-46 |
| MsG0080049135.01 | MsG0280007024.01 | 0.801702 | 7.947567e-49 | 3.820795e-46 |
| MsG0080049135.01 | MsG0280007161.01 | 0.816129 | 6.485284e-52 | 4.556623e-49 |
| MsG0080049135.01 | MsG0280007440.01 | 0.820025 | 8.530621e-53 | 6.673515e-50 |
| MsG0080049135.01 | MsG0280007441.01 | 0.800225 | 1.592548e-48 | 7.375394e-46 |
| MsG0080049135.01 | MsG0280007710.01 | 0.803918 | 2.770992e-49 | 1.409878e-46 |
| MsG0080049135.01 | MsG0280007718.01 | 0.815290 | 9.970823e-52 | 6.846653e-49 |
| MsG0080049135.01 | MsG0280007847.01 | 0.832429 | 9.499569e-56 | 1.061493e-52 |
| MsG0080049135.01 | MsG0280008758.01 | 0.824176 | 9.301936e-54 | 8.177990e-51 |
| MsG0080049135.01 | MsG0280009141.01 | 0.822756 | 1.997966e-53 | 1.687624e-50 |
| MsG0080049135.01 | MsG0280009575.01 | 0.835079 | 2.067352e-56 | 2.500734e-53 |
| MsG0080049135.01 | MsG0280010013.01 | 0.821503 | 3.900621e-53 | 3.178980e-50 |
| MsG0080049135.01 | MsG0380011614.01 | 0.838784 | 2.341232e-57 | 3.169032e-54 |
| MsG0080049135.01 | MsG0380011927.01 | 0.809968 | 1.455783e-50 | 8.667905e-48 |
| MsG0080049135.01 | MsG0380012073.01 | 0.828898 | 6.960029e-55 | 7.010761e-52 |
| MsG0080049135.01 | MsG0380012570.01 | 0.808256 | 3.386372e-50 | 1.927109e-47 |
| MsG0080049135.01 | MsG0380013085.01 | 0.802336 | 5.887584e-49 | 2.876652e-46 |
| MsG0080049135.01 | MsG0380013579.01 | 0.809871 | 1.527569e-50 | 9.072210e-48 |
| MsG0080049135.01 | MsG0380014175.01 | 0.817782 | 2.758313e-52 | 2.027817e-49 |
| MsG0080049135.01 | MsG0380014539.01 | 0.814558 | 1.449550e-51 | 9.758049e-49 |
| MsG0080049135.01 | MsG0380014541.01 | 0.808839 | 2.543086e-50 | 1.469334e-47 |
| MsG0080049135.01 | MsG0380014885.01 | 0.805926 | 1.054203e-49 | 5.647762e-47 |
| MsG0080049135.01 | MsG0380014908.01 | 0.829386 | 5.299685e-55 | 5.416199e-52 |
| MsG0080049135.01 | MsG0380015027.01 | 0.820837 | 5.553658e-53 | 4.443430e-50 |
| MsG0080049135.01 | MsG0380015512.01 | 0.828959 | 6.725958e-55 | 6.787123e-52 |
| MsG0080049135.01 | MsG0380015598.01 | -0.800932 | 1.142926e-48 | 5.389079e-46 |
| MsG0080049135.01 | MsG0380015818.01 | 0.880375 | 5.783265e-70 | 3.250860e-66 |
| MsG0080049135.01 | MsG0380016290.01 | 0.807890 | 4.051871e-50 | 2.283475e-47 |
| MsG0080049135.01 | MsG0380016513.01 | 0.816133 | 6.468830e-52 | 4.545715e-49 |
| MsG0080049135.01 | MsG0380016559.01 | 0.804631 | 1.968622e-49 | 1.020063e-46 |
| MsG0080049135.01 | MsG0380016560.01 | 0.814337 | 1.621752e-51 | 1.085225e-48 |
| MsG0080049135.01 | MsG0380016604.01 | 0.803276 | 3.766134e-49 | 1.884689e-46 |
| MsG0080049135.01 | MsG0380017511.01 | 0.807502 | 4.898036e-50 | 2.732785e-47 |
| MsG0080049135.01 | MsG0380017719.01 | 0.822780 | 1.972590e-53 | 1.667235e-50 |
| MsG0080049135.01 | MsG0380018001.01 | 0.814828 | 1.262553e-51 | 8.561238e-49 |
| MsG0080049135.01 | MsG0380018033.01 | 0.830594 | 2.689458e-55 | 2.846501e-52 |
| MsG0080049135.01 | MsG0480018477.01 | 0.812242 | 4.677816e-51 | 2.958702e-48 |
| MsG0080049135.01 | MsG0480019404.01 | 0.809772 | 1.603895e-50 | 9.501343e-48 |
| MsG0080049135.01 | MsG0480019785.01 | 0.817182 | 3.765770e-52 | 2.723205e-49 |
| MsG0080049135.01 | MsG0480021432.01 | 0.846807 | 1.722510e-59 | 3.000397e-56 |
| MsG0080049135.01 | MsG0480021832.01 | 0.825037 | 5.831612e-54 | 5.255416e-51 |
| MsG0080049135.01 | MsG0480021994.01 | 0.802024 | 6.826731e-49 | 3.308939e-46 |
| MsG0080049135.01 | MsG0480022035.01 | 0.805244 | 1.466173e-49 | 7.718040e-47 |
| MsG0080049135.01 | MsG0480022292.01 | 0.824245 | 8.962734e-54 | 7.894740e-51 |
| MsG0080049135.01 | MsG0480022493.01 | 0.821080 | 4.882245e-53 | 3.932951e-50 |
| MsG0080049135.01 | MsG0480022696.01 | 0.800782 | 1.226388e-48 | 5.760221e-46 |
| MsG0080049135.01 | MsG0480022960.01 | 0.840837 | 6.835612e-58 | 9.858262e-55 |
| MsG0080049135.01 | MsG0480023055.01 | 0.809645 | 1.707745e-50 | 1.008266e-47 |
| MsG0080049135.01 | MsG0480023221.01 | 0.817436 | 3.301668e-52 | 2.404389e-49 |
| MsG0080049135.01 | MsG0480023396.01 | 0.805625 | 1.219437e-49 | 6.482617e-47 |
| MsG0080049135.01 | MsG0480023519.01 | 0.825215 | 5.292516e-54 | 4.793796e-51 |
| MsG0080049135.01 | MsG0480023559.01 | 0.831509 | 1.603291e-55 | 1.743587e-52 |
| MsG0080049135.01 | MsG0580024084.01 | 0.821641 | 3.624678e-53 | 2.965661e-50 |
| MsG0080049135.01 | MsG0580024191.01 | 0.802502 | 5.441002e-49 | 2.669628e-46 |
| MsG0080049135.01 | MsG0580024339.01 | 0.800211 | 1.602919e-48 | 7.420763e-46 |
| MsG0080049135.01 | MsG0580024536.01 | 0.831863 | 1.311421e-55 | 1.441361e-52 |
| MsG0080049135.01 | MsG0580025268.01 | 0.821977 | 3.030898e-53 | 2.503540e-50 |
| MsG0080049135.01 | MsG0580025439.01 | 0.833991 | 3.879678e-56 | 4.542931e-53 |
| MsG0080049135.01 | MsG0580026225.01 | 0.831576 | 1.544039e-55 | 1.682566e-52 |
| MsG0080049135.01 | MsG0580026439.01 | 0.804655 | 1.946098e-49 | 1.009052e-46 |
| MsG0080049135.01 | MsG0580027361.01 | 0.824704 | 6.986239e-54 | 6.236516e-51 |
| MsG0080049135.01 | MsG0580028094.01 | 0.813676 | 2.269347e-51 | 1.491585e-48 |
| MsG0080049135.01 | MsG0580028582.01 | 0.803150 | 3.999789e-49 | 1.995165e-46 |
| MsG0080049135.01 | MsG0580028597.01 | 0.826655 | 2.407977e-54 | 2.272238e-51 |
| MsG0080049135.01 | MsG0580029283.01 | 0.833309 | 5.742239e-56 | 6.587666e-53 |
| MsG0080049135.01 | MsG0580029783.01 | 0.804827 | 1.792020e-49 | 9.333453e-47 |
| MsG0080049135.01 | MsG0580029801.01 | 0.806863 | 6.690667e-50 | 3.671443e-47 |
| MsG0080049135.01 | MsG0580030003.01 | 0.826823 | 2.195494e-54 | 2.081762e-51 |
| MsG0080049135.01 | MsG0680031051.01 | 0.801358 | 9.348736e-49 | 4.455705e-46 |
| MsG0080049135.01 | MsG0680032075.01 | 0.815227 | 1.029965e-51 | 7.059811e-49 |
| MsG0080049135.01 | MsG0680032762.01 | 0.822562 | 2.217000e-53 | 1.862343e-50 |
| MsG0080049135.01 | MsG0680035306.01 | 0.816778 | 4.639181e-52 | 3.318053e-49 |
| MsG0080049135.01 | MsG0680035854.01 | 0.806885 | 6.619321e-50 | 3.634278e-47 |
| MsG0080049135.01 | MsG0680035888.01 | 0.803092 | 4.111064e-49 | 2.047503e-46 |
| MsG0080049135.01 | MsG0780036240.01 | 0.831902 | 1.282631e-55 | 1.411349e-52 |
| MsG0080049135.01 | MsG0780038400.01 | 0.825430 | 4.708202e-54 | 4.290254e-51 |
| MsG0080049135.01 | MsG0780038587.01 | 0.818392 | 2.007660e-52 | 1.500980e-49 |
| MsG0080049135.01 | MsG0780039340.01 | 0.875984 | 2.002292e-68 | 9.545608e-65 |
| MsG0080049135.01 | MsG0780039943.01 | 0.817454 | 3.270978e-52 | 2.383237e-49 |
| MsG0080049135.01 | MsG0780040070.01 | 0.816877 | 4.409560e-52 | 3.162440e-49 |
| MsG0080049135.01 | MsG0780040110.01 | 0.800799 | 1.216264e-48 | 5.715318e-46 |
| MsG0080049135.01 | MsG0780040182.01 | 0.827849 | 1.246150e-54 | 1.217547e-51 |
| MsG0080049135.01 | MsG0780040190.01 | 0.821084 | 4.872469e-53 | 3.925429e-50 |
| MsG0080049135.01 | MsG0780040569.01 | 0.815637 | 8.347339e-52 | 5.786948e-49 |
| MsG0080049135.01 | MsG0780040845.01 | 0.803238 | 3.834594e-49 | 1.917078e-46 |
| MsG0080049135.01 | MsG0780041006.01 | 0.808113 | 3.632501e-50 | 2.059294e-47 |
| MsG0080049135.01 | MsG0780041223.01 | 0.834078 | 3.690627e-56 | 4.332372e-53 |
| MsG0080049135.01 | MsG0780041258.01 | 0.818616 | 1.786545e-52 | 1.343790e-49 |
| MsG0080049135.01 | MsG0780041295.01 | 0.802258 | 6.109657e-49 | 2.979150e-46 |
| MsG0080049135.01 | MsG0880042033.01 | 0.828743 | 7.587570e-55 | 7.608223e-52 |
| MsG0080049135.01 | MsG0880042128.01 | 0.803865 | 2.842027e-49 | 1.444035e-46 |
| MsG0080049135.01 | MsG0880042519.01 | 0.844037 | 9.689587e-59 | 1.544899e-55 |
| MsG0080049135.01 | MsG0880042795.01 | 0.801431 | 9.032136e-49 | 4.312665e-46 |
| MsG0080049135.01 | MsG0880042991.01 | 0.825908 | 3.627347e-54 | 3.350986e-51 |
| MsG0080049135.01 | MsG0880043163.01 | 0.814723 | 1.332590e-51 | 9.010722e-49 |
| MsG0080049135.01 | MsG0880045656.01 | 0.849542 | 3.025247e-60 | 5.753613e-57 |
| MsG0080049135.01 | MsG0880045754.01 | 0.814030 | 1.896049e-51 | 1.258236e-48 |
| MsG0080049135.01 | MsG0880045951.01 | 0.820462 | 6.773555e-53 | 5.363244e-50 |
| MsG0080049135.01 | MsG0880046068.01 | 0.822617 | 2.152335e-53 | 1.810914e-50 |
| MsG0080049135.01 | MsG0880046177.01 | 0.836647 | 8.276613e-57 | 1.049483e-53 |
| MsG0080049135.01 | MsG0880047212.01 | 0.824686 | 7.054829e-54 | 6.294621e-51 |
| MsG0080049135.01 | MsG0880047427.01 | 0.807392 | 5.169916e-50 | 2.876191e-47 |
| MsG0080049135.01 | MsG0880047428.01 | 0.838885 | 2.204122e-57 | 2.992644e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049135.01.T01 | MTR_1g016270 | 69.697 | 198 | 24 | 2 | 1 | 162 | 79 | 276 | 2.42e-57 | 181 |
| MsG0080049135.01.T01 | MTR_8g097140 | 46.457 | 127 | 52 | 4 | 35 | 157 | 120 | 234 | 8.83e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAGAAGAAACTAGAATT+TGG | 0.282317 | contig91end:+3105 | MsG0080049135.01.T01:CDS |
| AAGAAGGAGAAGAGTGTAGA+AGG | 0.312453 | contig91end:+3219 | MsG0080049135.01.T01:CDS |
| AAGAAGAATGGAAGTGAGTT+AGG | 0.374907 | contig91end:+3138 | MsG0080049135.01.T01:CDS |
| ATTCTCGGGATGTAGAAATT+AGG | 0.415570 | contig91end:+3435 | MsG0080049135.01.T01:CDS |
| AGAAGGAGAAGAGTGTAGAA+GGG | 0.423276 | contig91end:+3220 | MsG0080049135.01.T01:CDS |
| GAAGACACGGAAGAGAGATC+TGG | 0.440783 | contig91end:+3542 | MsG0080049135.01.T01:CDS |
| GTGGAGGGCTAGTTGATTCT+CGG | 0.450550 | contig91end:+3420 | MsG0080049135.01.T01:CDS |
| AGTCTAAGAAGAAAATGAAA+AGG | 0.460042 | contig91end:+3570 | MsG0080049135.01.T01:CDS |
| GGAGAGAGTGTAAAGAAGAA+TGG | 0.469789 | contig91end:+3126 | MsG0080049135.01.T01:CDS |
| GAGAAGCGTGATAAGAAAGA+TGG | 0.475565 | contig91end:+3084 | MsG0080049135.01.T01:CDS |
| TGGAGGGCTAGTTGATTCTC+GGG | 0.502825 | contig91end:+3421 | MsG0080049135.01.T01:CDS |
| AAGACACGGAAGAGAGATCT+GGG | 0.505868 | contig91end:+3543 | MsG0080049135.01.T01:CDS |
| GAATGGAAGTGAGTTAGGTC+AGG | 0.510402 | contig91end:+3143 | MsG0080049135.01.T01:CDS |
| GAAGTTGTTGGTTCTGTCGT+GGG | 0.512214 | contig91end:+3054 | MsG0080049135.01.T01:CDS |
| GAAGGAGAAGAGTGTAGAAG+GGG | 0.517307 | contig91end:+3221 | MsG0080049135.01.T01:CDS |
| CGAGAAGAAGAACAAGAAGA+AGG | 0.521154 | contig91end:+3203 | MsG0080049135.01.T01:CDS |
| TGAAGTTGTTGGTTCTGTCG+TGG | 0.542751 | contig91end:+3053 | MsG0080049135.01.T01:CDS |
| AGACGGAGCAAAGGAAGAAG+AGG | 0.546821 | contig91end:+3513 | MsG0080049135.01.T01:CDS |
| AAGAGGGAAAGACGGAGCAA+AGG | 0.550638 | contig91end:+3504 | MsG0080049135.01.T01:CDS |
| AAACCTGGTCGTGAAGTTGT+TGG | 0.551304 | contig91end:+3042 | MsG0080049135.01.T01:CDS |
| GAGTTAGGTCAGGACGATGA+AGG | 0.567638 | contig91end:+3153 | MsG0080049135.01.T01:CDS |
| AGATGGTCGAAAGTACTGTT+CGG | 0.573130 | contig91end:+3010 | None:intergenic |
| GAGTAAATTACATGCTGAAG+AGG | 0.574245 | contig91end:+3487 | MsG0080049135.01.T01:CDS |
| AATGGTGTGAAGAGTGAAAG+TGG | 0.576054 | contig91end:+3401 | MsG0080049135.01.T01:CDS |
| GGGACGAGAACAACAGAAAG+AGG | 0.576625 | contig91end:+3361 | MsG0080049135.01.T01:intron |
| TGTAGAAGGGGAGAATGTGA+AGG | 0.579317 | contig91end:+3233 | MsG0080049135.01.T01:CDS |
| GACGATGAAGGAAGAACGGA+GGG | 0.595325 | contig91end:+3165 | MsG0080049135.01.T01:CDS |
| AGTAAATTACATGCTGAAGA+GGG | 0.598011 | contig91end:+3488 | MsG0080049135.01.T01:CDS |
| GAACCAACAACTTCACGACC+AGG | 0.602335 | contig91end:-3045 | MsG0080049135.01.T01:intergenic |
| GTTCGGAGTGATGTTAAACC+TGG | 0.607851 | contig91end:+3027 | MsG0080049135.01.T01:CDS |
| GTTGTTGGTTCTGTCGTGGG+TGG | 0.608189 | contig91end:+3057 | MsG0080049135.01.T01:CDS |
| ACGAGAACAACAGAAAGAGG+TGG | 0.612657 | contig91end:+3364 | MsG0080049135.01.T01:CDS |
| TCAGGACGATGAAGGAAGAA+CGG | 0.621358 | contig91end:+3161 | MsG0080049135.01.T01:CDS |
| ACATGCTGAAGAGGGAAAGA+CGG | 0.635975 | contig91end:+3496 | MsG0080049135.01.T01:CDS |
| GAAGAGGAAGAATGAAGACA+CGG | 0.643138 | contig91end:+3529 | MsG0080049135.01.T01:CDS |
| GTGTGAAGAGTGAAAGTGGA+GGG | 0.650346 | contig91end:+3405 | MsG0080049135.01.T01:CDS |
| GGACGATGAAGGAAGAACGG+AGG | 0.651421 | contig91end:+3164 | MsG0080049135.01.T01:CDS |
| GAAAATGAAAAGGAAACACG+AGG | 0.691720 | contig91end:+3580 | MsG0080049135.01.T01:CDS |
| AAAATGAAAAGGAAACACGA+GGG | 0.733622 | contig91end:+3581 | MsG0080049135.01.T01:CDS |
| AGACACGGAAGAGAGATCTG+GGG | 0.742079 | contig91end:+3544 | MsG0080049135.01.T01:CDS |
| GGTGTGAAGAGTGAAAGTGG+AGG | 0.804724 | contig91end:+3404 | MsG0080049135.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGTCTAAGAAGAAAATGAAA+AGG | + | contig91end:3570-3589 | MsG0080049135.01.T01:CDS | 25.0% |
| AAAATGAAAAGGAAACACGA+GGG | + | contig91end:3581-3600 | MsG0080049135.01.T01:CDS | 30.0% | |
| AATGTGAAGGTTGAAAGTAA+AGG | + | contig91end:3246-3265 | MsG0080049135.01.T01:intron | 30.0% | |
| AGTAAATTACATGCTGAAGA+GGG | + | contig91end:3488-3507 | MsG0080049135.01.T01:CDS | 30.0% | |
| ATGTGAAGGTTGAAAGTAAA+GGG | + | contig91end:3247-3266 | MsG0080049135.01.T01:intron | 30.0% | |
| GGAAAGAAGAAACTAGAATT+TGG | + | contig91end:3105-3124 | MsG0080049135.01.T01:CDS | 30.0% | |
| TCGAAAAAGAGAAATGAAGT+GGG | + | contig91end:3300-3319 | MsG0080049135.01.T01:intron | 30.0% | |
| AAGAAGAATGGAAGTGAGTT+AGG | + | contig91end:3138-3157 | MsG0080049135.01.T01:CDS | 35.0% | |
| AAGGAGAAGAATTTAGAGGT+TGG | + | contig91end:3329-3348 | MsG0080049135.01.T01:intron | 35.0% | |
| ATTCTCGGGATGTAGAAATT+AGG | + | contig91end:3435-3454 | MsG0080049135.01.T01:CDS | 35.0% | |
| CGAAAAAGAGAAATGAAGTG+GGG | + | contig91end:3301-3320 | MsG0080049135.01.T01:intron | 35.0% | |
| GAAAATGAAAAGGAAACACG+AGG | + | contig91end:3580-3599 | MsG0080049135.01.T01:CDS | 35.0% | |
| GAGTAAATTACATGCTGAAG+AGG | + | contig91end:3487-3506 | MsG0080049135.01.T01:CDS | 35.0% | |
| GTCGAAAAAGAGAAATGAAG+TGG | + | contig91end:3299-3318 | MsG0080049135.01.T01:intron | 35.0% | |
| GTGAAAGGAGAAGAATTTAG+AGG | + | contig91end:3325-3344 | MsG0080049135.01.T01:intron | 35.0% | |
| GTGGAGAAAAAACTAAGCAA+TGG | + | contig91end:3383-3402 | MsG0080049135.01.T01:CDS | 35.0% | |
| TTAGAGGTTGGAAATGTGAA+GGG | + | contig91end:3341-3360 | MsG0080049135.01.T01:intron | 35.0% | |
| TTTAGAGGTTGGAAATGTGA+AGG | + | contig91end:3340-3359 | MsG0080049135.01.T01:intron | 35.0% | |
| ! | CGAAAAAGAAGCATGAAACT+GGG | + | contig91end:3459-3478 | MsG0080049135.01.T01:CDS | 35.0% |
| ! | TCGAAAAAGAAGCATGAAAC+TGG | + | contig91end:3458-3477 | MsG0080049135.01.T01:CDS | 35.0% |
| AATGGTGTGAAGAGTGAAAG+TGG | + | contig91end:3401-3420 | MsG0080049135.01.T01:CDS | 40.0% | |
| CGAGAAGAAGAACAAGAAGA+AGG | + | contig91end:3203-3222 | MsG0080049135.01.T01:CDS | 40.0% | |
| CTAATTTCTAACTCCTGAGG+AGG | - | contig91end:3279-3298 | MsG0080049135.01.T01:intergenic | 40.0% | |
| CTCCTCAGGAGTTAGAAATT+AGG | + | contig91end:3277-3296 | MsG0080049135.01.T01:intron | 40.0% | |
| GAAGAGGAAGAATGAAGACA+CGG | + | contig91end:3529-3548 | MsG0080049135.01.T01:CDS | 40.0% | |
| GACCTAATTTCTAACTCCTG+AGG | - | contig91end:3282-3301 | MsG0080049135.01.T01:intergenic | 40.0% | |
| ! | AAGAAGGAGAAGAGTGTAGA+AGG | + | contig91end:3219-3238 | MsG0080049135.01.T01:CDS | 40.0% |
| ! | AGAAGGAGAAGAGTGTAGAA+GGG | + | contig91end:3220-3239 | MsG0080049135.01.T01:CDS | 40.0% |
| ! | GAGAAGCGTGATAAGAAAGA+TGG | + | contig91end:3084-3103 | MsG0080049135.01.T01:CDS | 40.0% |
| ! | GGAGAGAGTGTAAAGAAGAA+TGG | + | contig91end:3126-3145 | MsG0080049135.01.T01:CDS | 40.0% |
| AAACCTGGTCGTGAAGTTGT+TGG | + | contig91end:3042-3061 | MsG0080049135.01.T01:CDS | 45.0% | |
| AAGACACGGAAGAGAGATCT+GGG | + | contig91end:3543-3562 | MsG0080049135.01.T01:CDS | 45.0% | |
| ACATGCTGAAGAGGGAAAGA+CGG | + | contig91end:3496-3515 | MsG0080049135.01.T01:CDS | 45.0% | |
| ACGAGAACAACAGAAAGAGG+TGG | + | contig91end:3364-3383 | MsG0080049135.01.T01:CDS | 45.0% | |
| GAAATGAAGTGGGGAGTGAA+AGG | + | contig91end:3310-3329 | MsG0080049135.01.T01:intron | 45.0% | |
| GAATGGAAGTGAGTTAGGTC+AGG | + | contig91end:3143-3162 | MsG0080049135.01.T01:CDS | 45.0% | |
| GTGTGAAGAGTGAAAGTGGA+GGG | + | contig91end:3405-3424 | MsG0080049135.01.T01:CDS | 45.0% | |
| GTTCGGAGTGATGTTAAACC+TGG | + | contig91end:3027-3046 | MsG0080049135.01.T01:CDS | 45.0% | |
| TAAAGGGATAGTTCCTCCTC+AGG | + | contig91end:3263-3282 | MsG0080049135.01.T01:intron | 45.0% | |
| TCAGGACGATGAAGGAAGAA+CGG | + | contig91end:3161-3180 | MsG0080049135.01.T01:CDS | 45.0% | |
| TGTAGAAGGGGAGAATGTGA+AGG | + | contig91end:3233-3252 | MsG0080049135.01.T01:CDS | 45.0% | |
| ! | GAAGGAGAAGAGTGTAGAAG+GGG | + | contig91end:3221-3240 | MsG0080049135.01.T01:CDS | 45.0% |
| !! | GAAGTTGTTGGTTCTGTCGT+GGG | + | contig91end:3054-3073 | MsG0080049135.01.T01:CDS | 45.0% |
| !! | TGAAGTTGTTGGTTCTGTCG+TGG | + | contig91end:3053-3072 | MsG0080049135.01.T01:CDS | 45.0% |
| AAGAGGGAAAGACGGAGCAA+AGG | + | contig91end:3504-3523 | MsG0080049135.01.T01:CDS | 50.0% | |
| AGACACGGAAGAGAGATCTG+GGG | + | contig91end:3544-3563 | MsG0080049135.01.T01:CDS | 50.0% | |
| AGACGGAGCAAAGGAAGAAG+AGG | + | contig91end:3513-3532 | MsG0080049135.01.T01:CDS | 50.0% | |
| GAACCAACAACTTCACGACC+AGG | - | contig91end:3048-3067 | MsG0080049135.01.T01:intergenic | 50.0% | |
| GAAGACACGGAAGAGAGATC+TGG | + | contig91end:3542-3561 | MsG0080049135.01.T01:CDS | 50.0% | |
| GACGATGAAGGAAGAACGGA+GGG | + | contig91end:3165-3184 | MsG0080049135.01.T01:CDS | 50.0% | |
| GAGTTAGGTCAGGACGATGA+AGG | + | contig91end:3153-3172 | MsG0080049135.01.T01:CDS | 50.0% | |
| GGGACGAGAACAACAGAAAG+AGG | + | contig91end:3361-3380 | MsG0080049135.01.T01:intron | 50.0% | |
| GGTGTGAAGAGTGAAAGTGG+AGG | + | contig91end:3404-3423 | MsG0080049135.01.T01:CDS | 50.0% | |
| !! | GTGGAGGGCTAGTTGATTCT+CGG | + | contig91end:3420-3439 | MsG0080049135.01.T01:CDS | 50.0% |
| !! | TGGAGGGCTAGTTGATTCTC+GGG | + | contig91end:3421-3440 | MsG0080049135.01.T01:CDS | 50.0% |
| GGACGATGAAGGAAGAACGG+AGG | + | contig91end:3164-3183 | MsG0080049135.01.T01:CDS | 55.0% | |
| !! | GTTGTTGGTTCTGTCGTGGG+TGG | + | contig91end:3057-3076 | MsG0080049135.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig91end | gene | 3012 | 3607 | 3012 | ID=MsG0080049135.01;Name=MsG0080049135.01 |
| contig91end | mRNA | 3012 | 3607 | 3012 | ID=MsG0080049135.01.T01;Parent=MsG0080049135.01;Name=MsG0080049135.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|162 |
| contig91end | exon | 3012 | 3254 | 3012 | ID=MsG0080049135.01.T01:exon:9156;Parent=MsG0080049135.01.T01 |
| contig91end | exon | 3362 | 3607 | 3362 | ID=MsG0080049135.01.T01:exon:9157;Parent=MsG0080049135.01.T01 |
| contig91end | CDS | 3012 | 3254 | 3012 | ID=MsG0080049135.01.T01:cds;Parent=MsG0080049135.01.T01 |
| contig91end | CDS | 3362 | 3607 | 3362 | ID=MsG0080049135.01.T01:cds;Parent=MsG0080049135.01.T01 |
| Gene Sequence |
| Protein sequence |
