AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006046.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006046.01.T01 MTR_1g112630 90.575 435 9 1 366 768 33 467 0.0 823
MsG0180006046.01.T01 MTR_4g037105 85.714 434 29 2 367 768 33 465 0.0 774
MsG0180006046.01.T01 MTR_0188s0020 78.571 434 60 2 367 768 39 471 0.0 714
MsG0180006046.01.T01 MTR_1g112640 92.568 296 0 1 48 321 1 296 0.0 556
MsG0180006046.01.T01 MTR_1g112640 92.256 297 0 1 48 321 1 297 0.0 556
MsG0180006046.01.T01 MTR_1g112640 100.000 236 0 0 86 321 1 236 4.20e-167 481
MsG0180006046.01.T01 MTR_4g115670 56.355 417 150 3 371 756 37 452 2.15e-166 489
MsG0180006046.01.T01 MTR_3g051240 40.152 396 186 9 383 751 39 410 4.55e-82 269
MsG0180006046.01.T01 MTR_5g092360 38.916 406 199 8 389 767 49 432 7.58e-81 266
MsG0180006046.01.T01 MTR_7g104330 38.718 390 191 8 389 751 54 422 1.00e-78 260
MsG0180006046.01.T01 MTR_1g060360 38.718 390 191 8 389 751 46 414 3.43e-77 256
MsG0180006046.01.T01 MTR_7g104360 37.563 394 195 11 387 751 45 416 1.08e-73 246
MsG0180006046.01.T01 MTR_3g083810 34.860 393 153 8 444 747 143 521 3.47e-59 210
MsG0180006046.01.T01 MTR_6g013050 31.685 445 193 10 399 746 89 519 4.52e-59 211
MsG0180006046.01.T01 MTR_3g083820 35.369 393 151 10 444 747 143 521 1.78e-57 205
MsG0180006046.01.T01 MTR_7g056403 32.762 467 190 15 389 747 70 520 3.65e-57 204
MsG0180006046.01.T01 MTR_6g013050 30.824 425 183 10 399 726 89 499 2.16e-51 188
MsG0180006046.01.T01 MTR_1g052505 24.876 402 192 13 381 694 183 562 3.49e-22 102
MsG0180006046.01.T01 MTR_4g037670 25.450 389 184 12 389 694 216 581 1.50e-21 100
MsG0180006046.01.T01 MTR_4g082930 23.707 464 248 16 368 741 125 572 4.52e-16 82.8
MsG0180006046.01.T01 MTR_3g074930 27.106 273 163 10 495 741 338 600 3.59e-15 79.7
MsG0180006046.01.T01 MTR_3g074930 27.106 273 163 10 495 741 331 593 4.25e-15 79.7
MsG0180006046.01.T01 MTR_5g045600 26.471 272 152 9 496 741 340 589 1.35e-13 74.7
MsG0180006046.01.T01 MTR_4g082940 25.424 236 149 8 524 741 332 558 7.60e-13 72.4
MsG0180006046.01.T01 MTR_4g103520 25.283 265 164 9 496 741 271 520 9.78e-13 72.0
MsG0180006046.01.T01 MTR_4g103520 25.283 265 164 9 496 741 348 597 1.18e-12 72.0
MsG0180006046.01.T01 MTR_8g063080 24.265 272 158 9 496 741 333 582 1.03e-11 68.9
MsG0180006046.01.T01 MTR_3g074970 23.853 327 189 13 448 741 198 497 4.11e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006046.01.T01 AT2G16430 68.547 461 104 3 334 762 12 463 0.0 661
MsG0180006046.01.T01 AT2G27190 65.468 417 111 2 372 756 43 458 0.0 580
MsG0180006046.01.T01 AT2G16430 74.041 339 56 1 458 764 7 345 0.0 537
MsG0180006046.01.T01 AT1G56360 59.953 427 133 4 371 761 34 458 0.0 531
MsG0180006046.01.T01 AT4G36350 58.741 429 140 4 368 761 32 458 0.0 526
MsG0180006046.01.T01 AT2G18130 55.353 439 155 11 356 763 13 441 1.62e-164 483
MsG0180006046.01.T01 AT5G34850 55.024 418 156 3 370 756 35 451 5.74e-164 483
MsG0180006046.01.T01 AT2G16860 67.944 287 79 4 48 321 1 287 2.04e-127 382
MsG0180006046.01.T01 AT2G16860 67.944 287 79 4 48 321 1 287 2.04e-127 382
MsG0180006046.01.T01 AT3G46120 51.289 388 131 11 378 756 43 381 7.53e-121 369
MsG0180006046.01.T01 AT1G52940 54.694 245 73 6 373 583 1 241 2.45e-84 268
MsG0180006046.01.T01 AT3G20500 39.541 392 188 8 387 751 45 414 9.98e-80 263
MsG0180006046.01.T01 AT3G52820 39.744 390 187 9 389 751 47 415 3.83e-79 261
MsG0180006046.01.T01 AT3G52780 38.677 393 191 9 389 751 44 416 2.88e-74 248
MsG0180006046.01.T01 AT3G52810 38.084 428 214 11 352 747 7 415 3.20e-73 245
MsG0180006046.01.T01 AT3G07130 32.511 446 183 13 406 747 80 511 2.77e-53 193
MsG0180006046.01.T01 AT2G32770 40.441 272 115 5 509 747 273 530 6.53e-52 190
MsG0180006046.01.T01 AT4G13700 33.884 363 154 10 406 696 80 428 1.54e-48 178
MsG0180006046.01.T01 AT3G07130 30.271 479 183 14 406 747 80 544 4.21e-47 177
MsG0180006046.01.T01 AT3G52780 35.826 321 165 9 389 677 44 355 5.36e-47 171
MsG0180006046.01.T01 AT2G32770 38.800 250 106 5 509 725 192 427 3.83e-44 165
MsG0180006046.01.T01 AT2G32770 35.662 272 99 6 509 747 273 501 8.57e-39 151
MsG0180006046.01.T01 AT4G13700 32.099 324 145 9 406 657 80 400 1.62e-37 145
MsG0180006046.01.T01 AT1G13900 23.941 472 245 16 363 741 119 569 3.63e-19 92.8
MsG0180006046.01.T01 AT2G03450 26.621 293 164 9 485 741 292 569 8.12e-16 82.0
MsG0180006046.01.T01 AT5G50400 24.716 352 200 13 448 741 165 509 1.34e-13 74.7
MsG0180006046.01.T01 AT5G50400 24.716 352 200 13 448 741 237 581 2.36e-13 73.9
MsG0180006046.01.T01 AT4G24890 25.581 258 172 9 496 741 336 585 4.19e-11 67.0

Find 192 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGGTTTCGCCAATTTC+TGG 0.125859 1:+99334483 None:intergenic
TTCTGTCTGGCAGAGAGTTT+GGG 0.193796 1:+99338611 None:intergenic
TCACACTACTATAAGGAATT+TGG 0.199886 1:-99334840 MsG0180006046.01.T01:CDS
TTTCTGTCTGGCAGAGAGTT+TGG 0.214726 1:+99338610 None:intergenic
CACCTAACATTGTCATGATT+TGG 0.223594 1:+99334591 None:intergenic
ATTGATTTCGCCCCAGAAAT+TGG 0.247783 1:-99334495 MsG0180006046.01.T01:CDS
CTAATGCTGGGAAGTTTAAA+TGG 0.249290 1:-99336243 MsG0180006046.01.T01:CDS
GTACTTTGTGATGCTTTATA+AGG 0.272518 1:+99334429 None:intergenic
CTAACCAGATTGAGTGAGTT+TGG 0.276157 1:+99339065 None:intergenic
GGCACATCAGGACCAATTTC+AGG 0.281679 1:+99334746 None:intergenic
TTTATAACTCCTCCTGAAAT+TGG 0.285563 1:-99334758 MsG0180006046.01.T01:CDS
CACACGTTCGGTTCTTTCAT+AGG 0.290239 1:+99334128 None:intergenic
TACATCGACCTCAATGTTCT+TGG 0.295867 1:+99336691 None:intergenic
TTCTCTGGAGCAGGCTGATC+AGG 0.298134 1:+99338653 None:intergenic
TAGCAACAATCAACATTATA+TGG 0.299454 1:-99334232 MsG0180006046.01.T01:CDS
CACAAAGTACTTCACCCTTT+TGG 0.304317 1:-99334416 MsG0180006046.01.T01:CDS
TTATTCATCACACTACTATA+AGG 0.305033 1:-99334847 MsG0180006046.01.T01:CDS
GAAGCATCACGGTAGAATTC+TGG 0.315653 1:+99336638 None:intergenic
GTGATGCTTTATAAGGAGTA+TGG 0.325433 1:+99334436 None:intergenic
GTTTCTGTCCTGTTAACTTT+AGG 0.327863 1:+99334294 None:intergenic
CAGAAGAGAAATACAAGAAA+TGG 0.332825 1:-99338286 MsG0180006046.01.T01:CDS
GATGGAGTTGAGAGCTAAAA+TGG 0.334885 1:-99338582 MsG0180006046.01.T01:intron
TGGCTTATCAACCATGGATA+TGG 0.334997 1:-99334536 MsG0180006046.01.T01:CDS
CTGGGGCGAAATCAATTTCA+TGG 0.339164 1:+99334502 None:intergenic
GGAACACAACAAGACAGTTT+TGG 0.351168 1:-99334781 MsG0180006046.01.T01:CDS
AGATTCTTCAATTACTCATC+TGG 0.355881 1:-99334872 MsG0180006046.01.T01:CDS
GTTTGGTTTCGCCAATTTCT+GGG 0.356914 1:+99334484 None:intergenic
TACTATTATGAGGTTGGACT+TGG 0.361764 1:-99334803 MsG0180006046.01.T01:CDS
GACAGTATACCTTTCCATAC+TGG 0.367957 1:+99336609 None:intergenic
ACCTAACATTGTCATGATTT+GGG 0.368249 1:+99334592 None:intergenic
CGAGCGAGGAACTGCATTGC+CGG 0.368519 1:-99336312 MsG0180006046.01.T01:CDS
GGAAAACTTCTTGATGCAAA+TGG 0.374108 1:-99338353 MsG0180006046.01.T01:CDS
ACAATGTTAGGTGGGATACT+TGG 0.374862 1:-99334581 MsG0180006046.01.T01:CDS
TCTCATTGTTATTCTAATGC+TGG 0.378311 1:-99336256 MsG0180006046.01.T01:CDS
CGAATAAGGTTTGAATGGTT+TGG 0.378529 1:+99334467 None:intergenic
GGTCGAATGCAGTGCGCTAC+TGG 0.381250 1:-99334949 MsG0180006046.01.T01:CDS
GTATGGTATCGGTGCGAATA+AGG 0.387101 1:+99334453 None:intergenic
AGGAGCTACCTAAAGTTAAC+AGG 0.390499 1:-99334302 MsG0180006046.01.T01:CDS
TAGAAATCAAGATGGTTATT+CGG 0.395276 1:-99333890 MsG0180006046.01.T01:CDS
TGCAATATTCGACACACGTT+CGG 0.401173 1:+99334116 None:intergenic
TTTGGTCTCATAGGAGATCT+TGG 0.404619 1:-99334716 MsG0180006046.01.T01:intron
ATTACTGGCGTTCCGGCAAT+CGG 0.404996 1:+99339134 None:intergenic
CCAAATGTGTATGGCACATC+AGG 0.405903 1:+99334734 None:intergenic
AAGAAGATTGAACGGGCCTT+TGG 0.407954 1:-99336364 MsG0180006046.01.T01:CDS
TCCTCATTGTTCTCTGGAGC+AGG 0.408226 1:+99338644 None:intergenic
AGCACCGATTTCTCAGAATT+CGG 0.412374 1:+99339325 None:intergenic
TCTTGTTGAAATGCTCATTA+CGG 0.414024 1:+99336383 None:intergenic
GCATTCAGAGAGGCTAGCTT+TGG 0.414506 1:-99333964 MsG0180006046.01.T01:CDS
AAATGGTGGATTGCGTTCTC+TGG 0.417439 1:-99336226 MsG0180006046.01.T01:CDS
TGGTTATAATGCTCCCCAAC+AGG 0.417531 1:-99335041 MsG0180006046.01.T01:CDS
CCATACACATTTGGTCTCAT+AGG 0.418182 1:-99334725 MsG0180006046.01.T01:CDS
GAAAAGGATTACTGGCGTTC+CGG 0.418188 1:+99339127 None:intergenic
TCCCAAATCATGACAATGTT+AGG 0.419243 1:-99334593 MsG0180006046.01.T01:CDS
TTCAGCTCACATCATTGTCT+TGG 0.421163 1:-99334376 MsG0180006046.01.T01:CDS
CCTGATGTGCCATACACATT+TGG 0.422920 1:-99334734 MsG0180006046.01.T01:CDS
CGGTGCGAATAAGGTTTGAA+TGG 0.426529 1:+99334462 None:intergenic
TCTCCAATGGTTATGTATAC+AGG 0.430699 1:+99334045 None:intergenic
TTACACAAGGTGATCTTGTT+GGG 0.430973 1:-99335012 MsG0180006046.01.T01:CDS
AGGATCCTGCTCCATTCGGC+TGG 0.431794 1:-99338259 MsG0180006046.01.T01:CDS
GAGATGTGCATCCCGATTGC+CGG 0.431903 1:-99339146 MsG0180006046.01.T01:CDS
CTCATTGTTATTCTAATGCT+GGG 0.435726 1:-99336255 MsG0180006046.01.T01:CDS
TGAGCAGTGGAATCATCAAC+TGG 0.435821 1:+99333826 None:intergenic
TTGGCCTCGTATTCAGCATA+TGG 0.441264 1:-99334357 MsG0180006046.01.T01:CDS
CAAGCCAAACTCACTCAATC+TGG 0.442251 1:-99339069 MsG0180006046.01.T01:intron
CAGGATGGTACAAGAACTTA+AGG 0.443877 1:-99336482 MsG0180006046.01.T01:CDS
CAATGTTAGGTGGGATACTT+GGG 0.445086 1:-99334580 MsG0180006046.01.T01:CDS
AAAACGTAATCAAATTGAAA+TGG 0.446058 1:-99338462 MsG0180006046.01.T01:CDS
ATTACACAAGGTGATCTTGT+TGG 0.449022 1:-99335013 MsG0180006046.01.T01:CDS
GATGCTTCAAGTCTCCAGTA+TGG 0.454556 1:-99336623 MsG0180006046.01.T01:CDS
GAGCCATCCTCATTGTTCTC+TGG 0.465692 1:+99338638 None:intergenic
TGGCTGTGGTTCTGTCATGT+TGG 0.470647 1:+99333996 None:intergenic
ACATTCGTGAAAAGGATTAC+TGG 0.473926 1:+99339119 None:intergenic
TAATCAGTACATTCGTGAAA+AGG 0.476136 1:+99339111 None:intergenic
AGAAGAGAAATACAAGAAAT+GGG 0.476799 1:-99338285 MsG0180006046.01.T01:CDS
CGGTTGAGGCTGATTCCCAT+TGG 0.478638 1:-99333870 MsG0180006046.01.T01:CDS
AATTCCGAATTCTGAGAAAT+CGG 0.481761 1:-99339329 MsG0180006046.01.T01:intron
CTTGGGGAAGGTTTGTAGAA+AGG 0.482123 1:-99334563 MsG0180006046.01.T01:CDS
ACAGTACCAATGGCTTGAAC+AGG 0.482376 1:-99334322 MsG0180006046.01.T01:CDS
CATGGGTATTGAAGTATCCA+TGG 0.487021 1:+99339839 None:intergenic
ACTAAATACTATTATGAGGT+TGG 0.489189 1:-99334809 MsG0180006046.01.T01:CDS
GGAGGCTCCAACAGAGTCTA+GGG 0.490980 1:-99338420 MsG0180006046.01.T01:CDS
TCAGAATTCGGAATTCGATT+CGG 0.493598 1:+99339337 None:intergenic
TGGAGGCTCCAACAGAGTCT+AGG 0.495220 1:-99338421 MsG0180006046.01.T01:CDS
GTAGCTCCTGTTCAAGCCAT+TGG 0.495291 1:+99334316 None:intergenic
CCATCCCAGCCGAATGGAGC+AGG 0.495866 1:+99338254 None:intergenic
TTGTGTAATATGAACCTGTT+GGG 0.497585 1:+99335027 None:intergenic
CCTATGAGACCAAATGTGTA+TGG 0.500434 1:+99334725 None:intergenic
ACCCATGGGTATCCGCATAG+TGG 0.508335 1:-99339823 MsG0180006046.01.T01:CDS
AAGGTTGATGTTGTGTATGC+TGG 0.513119 1:-99334162 MsG0180006046.01.T01:CDS
TTTCAACAAGAAGATTGAAC+GGG 0.513427 1:-99336371 MsG0180006046.01.T01:CDS
TTAACAGGACAGAAACTCCT+TGG 0.513520 1:-99334287 MsG0180006046.01.T01:CDS
CCTGCTCCATTCGGCTGGGA+TGG 0.514280 1:-99338254 MsG0180006046.01.T01:intron
TCAAGATGGTTATTCGGTTG+AGG 0.514507 1:-99333884 MsG0180006046.01.T01:CDS
CCTCAGAGGATAAGATTGAC+AGG 0.514772 1:-99336501 MsG0180006046.01.T01:CDS
GCCATGGTTTGTTAAGTACA+AGG 0.515158 1:-99334181 MsG0180006046.01.T01:CDS
GGAGATGGAGGGAACCTTGG+AGG 0.515637 1:-99334027 MsG0180006046.01.T01:CDS
ATTGGAGATGGAGGGAACCT+TGG 0.515906 1:-99334030 MsG0180006046.01.T01:CDS
GAACACATGCTCACTATAGC+TGG 0.521332 1:-99333915 MsG0180006046.01.T01:CDS
TGGGTGACCGAGGATGAACC+AGG 0.523413 1:-99334971 MsG0180006046.01.T01:CDS
ACTTCTTGATGCAAATGGAC+TGG 0.525736 1:-99338348 MsG0180006046.01.T01:CDS
AACAATCAACATTATATGGA+AGG 0.525860 1:-99334228 MsG0180006046.01.T01:CDS
CATGGATACTTCAATACCCA+TGG 0.532515 1:-99339838 MsG0180006046.01.T01:CDS
GGCAATCGGGATGCACATCT+CGG 0.536567 1:+99339148 None:intergenic
TGTTGGTTTCTGAGCCTCCA+AGG 0.536845 1:+99334013 None:intergenic
ATTCGACCCTGGTTCATCCT+CGG 0.539514 1:+99334964 None:intergenic
TTACTGGCGTTCCGGCAATC+GGG 0.540658 1:+99339135 None:intergenic
TGGTACAAGAACTTAAGGAT+AGG 0.540824 1:-99336477 MsG0180006046.01.T01:CDS
TGATGAGGGATGCATGATGA+TGG 0.544745 1:-99338707 MsG0180006046.01.T01:intron
ATTGCATATAATGTTGTGAA+TGG 0.545809 1:-99334099 MsG0180006046.01.T01:CDS
GAGAAGGATCCTGCTCCATT+CGG 0.549251 1:-99338263 MsG0180006046.01.T01:CDS
TACATAACCATTGGAGATGG+AGG 0.550025 1:-99334039 MsG0180006046.01.T01:CDS
CAACACTAAATACTATTATG+AGG 0.552300 1:-99334813 MsG0180006046.01.T01:CDS
GAAACACCCCTAGACTCTGT+TGG 0.552933 1:+99338413 None:intergenic
GCTCCTGTATACATAACCAT+TGG 0.553714 1:-99334048 MsG0180006046.01.T01:CDS
ACAATCAACATTATATGGAA+GGG 0.554284 1:-99334227 MsG0180006046.01.T01:CDS
GAAATACAAGAAATGGGAGA+AGG 0.559598 1:-99338279 MsG0180006046.01.T01:CDS
TCTCTGAATGCTGAGTACTC+TGG 0.561355 1:+99333976 None:intergenic
GGCTAATGAAAAGAAGAGGA+TGG 0.564931 1:-99338441 MsG0180006046.01.T01:CDS
AATGCTGAGTACTCTGGCTG+TGG 0.569296 1:+99333982 None:intergenic
AGAAACGTAGGGCATTTAGC+AGG 0.569318 1:-99336450 MsG0180006046.01.T01:CDS
CTTTATAAGGAGTATGGTAT+CGG 0.573117 1:+99334442 None:intergenic
TTTCCTACAGTCCATATCCA+TGG 0.573550 1:+99334525 None:intergenic
GGTACAAGAACTTAAGGATA+GGG 0.574451 1:-99336476 MsG0180006046.01.T01:CDS
CCTGTCAATCTTATCCTCTG+AGG 0.574499 1:+99336501 None:intergenic
CAAATCATGACAATGTTAGG+TGG 0.575920 1:-99334590 MsG0180006046.01.T01:CDS
ATCCACTATGCGGATACCCA+TGG 0.577246 1:+99339821 None:intergenic
CAATCAACATTATATGGAAG+GGG 0.577345 1:-99334226 MsG0180006046.01.T01:CDS
CAACCATGGATATGGACTGT+AGG 0.580717 1:-99334528 MsG0180006046.01.T01:CDS
AACATACCATCCCAGCCGAA+TGG 0.583714 1:+99338248 None:intergenic
GGATCCTGCTCCATTCGGCT+GGG 0.585839 1:-99338258 MsG0180006046.01.T01:CDS
TCCACTATGCGGATACCCAT+GGG 0.587023 1:+99339822 None:intergenic
AATATACACCACAGTACCAA+TGG 0.587307 1:-99334332 MsG0180006046.01.T01:CDS
TGTTCAAGCCATTGGTACTG+TGG 0.587686 1:+99334324 None:intergenic
GTATACATAACCATTGGAGA+TGG 0.590351 1:-99334042 MsG0180006046.01.T01:CDS
CTCCAATGTGTATTTACCAA+AGG 0.590665 1:+99336348 None:intergenic
GATCGTATCGTGGGTGACCG+AGG 0.591550 1:-99334981 MsG0180006046.01.T01:CDS
TTAGGTGGGATACTTGGGGA+AGG 0.593341 1:-99334575 MsG0180006046.01.T01:CDS
AGAGGATAAGATTGACAGGA+TGG 0.594250 1:-99336497 MsG0180006046.01.T01:CDS
AAGGTTCCCTCCATCTCCAA+TGG 0.594309 1:+99334032 None:intergenic
ACTGCAGAAGCAAATCAGTC+CGG 0.596042 1:+99336293 None:intergenic
AGGATAGGGACGAGAAACGT+AGG 0.596930 1:-99336462 MsG0180006046.01.T01:CDS
AAATCATGACAATGTTAGGT+GGG 0.598863 1:-99334589 MsG0180006046.01.T01:CDS
ATTTCAACAAGAAGATTGAA+CGG 0.602140 1:-99336372 MsG0180006046.01.T01:CDS
GGAAAGCAGTGATCGTATCG+TGG 0.602783 1:-99334991 MsG0180006046.01.T01:CDS
GGCCTTTGGTAAATACACAT+TGG 0.602906 1:-99336350 MsG0180006046.01.T01:CDS
AGCAGAAGTGGCTTGACGAT+AGG 0.605628 1:-99338388 MsG0180006046.01.T01:CDS
TAGCGCACTGCATTCGACCC+TGG 0.605970 1:+99334953 None:intergenic
ACTATTATGAGGTTGGACTT+GGG 0.609032 1:-99334802 MsG0180006046.01.T01:CDS
ATGCTGGGAAGTTTAAATGG+TGG 0.609597 1:-99336240 MsG0180006046.01.T01:CDS
TTTGGTTTCGCCAATTTCTG+GGG 0.609945 1:+99334485 None:intergenic
AAATGGCTAATGAAAAGAAG+AGG 0.612031 1:-99338445 MsG0180006046.01.T01:CDS
TTTGTTAGGAATGTTCAGAA+GGG 0.615218 1:-99335106 MsG0180006046.01.T01:intron
GCTCCAGAGAACAATGAGGA+TGG 0.616407 1:-99338641 MsG0180006046.01.T01:CDS
ACCTTGTACTTAACAAACCA+TGG 0.616531 1:+99334180 None:intergenic
CGCATAGTGGATACTCTCGA+GGG 0.618055 1:-99339810 MsG0180006046.01.T01:intron
TGAGAGTAATGTATGAGCCA+TGG 0.618209 1:-99334197 MsG0180006046.01.T01:CDS
GAAAGCAGTGATCGTATCGT+GGG 0.619977 1:-99334990 MsG0180006046.01.T01:CDS
TCTGTCTGGCAGAGAGTTTG+GGG 0.622516 1:+99338612 None:intergenic
ATGGGTATTGAAGTATCCAT+GGG 0.625228 1:+99339840 None:intergenic
TTCAAGTCTCCAGTATGGAA+AGG 0.627917 1:-99336618 MsG0180006046.01.T01:intron
AGCTGGCATAGAAATCAAGA+TGG 0.628581 1:-99333898 MsG0180006046.01.T01:CDS
GGACTGATTTGCTTCTGCAG+TGG 0.634288 1:-99336291 MsG0180006046.01.T01:CDS
GGATAGGGACGAGAAACGTA+GGG 0.635157 1:-99336461 MsG0180006046.01.T01:CDS
GGGGTGTTTCGAAGCAGAAG+TGG 0.643438 1:-99338400 MsG0180006046.01.T01:CDS
ACTGGAGACTTGAAGCATCA+CGG 0.643816 1:+99336627 None:intergenic
GATTAAAATAATCTCGAGCG+AGG 0.647986 1:-99336326 MsG0180006046.01.T01:CDS
TCAATGTAAAACATGAGCAG+TGG 0.648716 1:+99333813 None:intergenic
ATGGATACTTCAATACCCAT+GGG 0.648723 1:-99339837 MsG0180006046.01.T01:CDS
TGCATTAGAACAATCAACCA+AGG 0.650420 1:+99334270 None:intergenic
CTTGTGTAATATGAACCTGT+TGG 0.651645 1:+99335026 None:intergenic
CCGCATAGTGGATACTCTCG+AGG 0.652146 1:-99339811 MsG0180006046.01.T01:CDS
ACATAACCATTGGAGATGGA+GGG 0.652593 1:-99334038 MsG0180006046.01.T01:CDS
GGAGCGTGGCTTATCAACCA+TGG 0.653583 1:-99334542 MsG0180006046.01.T01:CDS
ATATATGCTTGACACACAAG+AGG 0.658090 1:-99338312 MsG0180006046.01.T01:CDS
TGGGGAGCATTATAACCAGA+AGG 0.658702 1:+99335046 None:intergenic
CAACAGGTTCATATTACACA+AGG 0.659532 1:-99335025 MsG0180006046.01.T01:CDS
AAAGCGAACCAAGAACATTG+AGG 0.660498 1:-99336699 MsG0180006046.01.T01:CDS
TTGTTCTAATGCATTCACCA+TGG 0.660660 1:-99334260 MsG0180006046.01.T01:CDS
AAGGTTTGTAGAAAGGAGCG+TGG 0.671855 1:-99334556 MsG0180006046.01.T01:CDS
AAATGGACTGGATATGACAA+AGG 0.684378 1:-99338336 MsG0180006046.01.T01:CDS
ACATCAGGACCAATTTCAGG+AGG 0.690189 1:+99334749 None:intergenic
GAGCAGTGGAATCATCAACT+GGG 0.690782 1:+99333827 None:intergenic
TGATTGTTGCTATTATACCA+TGG 0.695794 1:+99334243 None:intergenic
AATCGAATTTGAAGACGCTG+AGG 0.700545 1:-99339376 MsG0180006046.01.T01:CDS
TAATGAAAAGAAGAGGATGG+AGG 0.705005 1:-99338438 MsG0180006046.01.T01:CDS
GGGTGACCGAGGATGAACCA+GGG 0.713113 1:-99334970 MsG0180006046.01.T01:CDS
AGAGTACTCAGCATTCAGAG+AGG 0.715627 1:-99333974 MsG0180006046.01.T01:CDS
GAGGCTCCAACAGAGTCTAG+GGG 0.720122 1:-99338419 MsG0180006046.01.T01:CDS
AATGTTAGGTGGGATACTTG+GGG 0.732363 1:-99334579 MsG0180006046.01.T01:CDS
TGTGTAATATGAACCTGTTG+GGG 0.733638 1:+99335028 None:intergenic
GCCTGCTCCAGAGAACAATG+AGG 0.734012 1:-99338645 MsG0180006046.01.T01:CDS
CCTCGAGAGTATCCACTATG+CGG 0.743051 1:+99339811 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTTATTATTTAT+TGG - Chr1:99335119-99335138 MsG0180006046.01.T01:intron 0.0%
!! AAAAAATTAAAATAAGATAC+AGG + Chr1:99336488-99336507 None:intergenic 10.0%
!! ATAATTCTATAAATAATCAT+GGG + Chr1:99336228-99336247 None:intergenic 10.0%
!! CAATATATTACAAAAAATTA+TGG - Chr1:99334629-99334648 MsG0180006046.01.T01:intron 10.0%
!! TTAATATTTGACAATTTAAA+AGG - Chr1:99334177-99334196 MsG0180006046.01.T01:CDS 10.0%
!! TTATAATTTCAAAAATTCAA+AGG + Chr1:99334429-99334448 None:intergenic 10.0%
!!! TATCTATTTTAAGATAAATT+GGG + Chr1:99335743-99335762 None:intergenic 10.0%
!!! TTAAATATATGTTTTTTTGT+TGG - Chr1:99336413-99336432 MsG0180006046.01.T01:CDS 10.0%
!! GAATATTAAACTATAGTAAA+TGG + Chr1:99338335-99338354 None:intergenic 15.0%
!! GATAATTCTATAAATAATCA+TGG + Chr1:99336229-99336248 None:intergenic 15.0%
!! TAATTCTATAAATAATCATG+GGG + Chr1:99336227-99336246 None:intergenic 15.0%
!! TAGTGTCATATTAAAATTTA+GGG - Chr1:99335649-99335668 MsG0180006046.01.T01:intron 15.0%
!!! AAAAATGTTATTTTTATTGC+TGG - Chr1:99335441-99335460 MsG0180006046.01.T01:intron 15.0%
!!! AATCATTTACTAACTTTTTA+CGG - Chr1:99336520-99336539 MsG0180006046.01.T01:intron 15.0%
!!! AGCAATAAAAATAACATTTT+TGG + Chr1:99335442-99335461 None:intergenic 15.0%
!!! ATCTATTTTAAGATAAATTG+GGG + Chr1:99335742-99335761 None:intergenic 15.0%
!!! ATCTTTGGTTAATAAATTTT+AGG + Chr1:99336652-99336671 None:intergenic 15.0%
!!! CTATCTATTTTAAGATAAAT+TGG + Chr1:99335744-99335763 None:intergenic 15.0%
!!! TCTTTGGTTAATAAATTTTA+GGG + Chr1:99336651-99336670 None:intergenic 15.0%
!!! TTTTTGTAATATATTGTATG+TGG + Chr1:99334625-99334644 None:intergenic 15.0%
!! AAAAATATCCCACAAATTAT+TGG + Chr1:99336182-99336201 None:intergenic 20.0%
!! AAAACGTAATCAAATTGAAA+TGG - Chr1:99335188-99335207 MsG0180006046.01.T01:intron 20.0%
!! ACTATATTTAGTGATATCAA+TGG + Chr1:99333941-99333960 None:intergenic 20.0%
!! AGTGTCATATTAAAATTTAG+GGG - Chr1:99335650-99335669 MsG0180006046.01.T01:intron 20.0%
!! ATATATTAACATAAACCTCA+GGG - Chr1:99336608-99336627 MsG0180006046.01.T01:intron 20.0%
!! CGATTCAAATAAAAATATAC+AGG - Chr1:99337647-99337666 MsG0180006046.01.T01:intron 20.0%
!! CTATATTTAGTGATATCAAT+GGG + Chr1:99333940-99333959 None:intergenic 20.0%
!! GATATCACTAAATATAGTTA+GGG - Chr1:99333943-99333962 MsG0180006046.01.T01:CDS 20.0%
!! GTAGTGTCATATTAAAATTT+AGG - Chr1:99335648-99335667 MsG0180006046.01.T01:intron 20.0%
!! TAAACTATAGTAAATGGAAT+TGG + Chr1:99338329-99338348 None:intergenic 20.0%
!! TAATTTACTCCAATAATTTG+TGG - Chr1:99336170-99336189 MsG0180006046.01.T01:intron 20.0%
!! TCTGTATATATGAAATGAAA+TGG + Chr1:99337745-99337764 None:intergenic 20.0%
!! TGATATCACTAAATATAGTT+AGG - Chr1:99333942-99333961 MsG0180006046.01.T01:CDS 20.0%
!! TTTGACAATTTAAAAGGATT+AGG - Chr1:99334183-99334202 MsG0180006046.01.T01:CDS 20.0%
!!! AAAAATGCTTTTAGCTTTAA+CGG + Chr1:99335800-99335819 None:intergenic 20.0%
!!! AATTTACTCCAATAATTTGT+GGG - Chr1:99336171-99336190 MsG0180006046.01.T01:intron 20.0%
!!! AGAACAAATTGATTTATTCT+TGG + Chr1:99336301-99336320 None:intergenic 20.0%
!!! AGGAAATTTATTTTATCGAA+CGG - Chr1:99337936-99337955 MsG0180006046.01.T01:intron 20.0%
!!! AGTTTTTGTCATAACTATAT+GGG + Chr1:99334147-99334166 None:intergenic 20.0%
!!! ATACAGATATATTGACTTAA+CGG - Chr1:99337758-99337777 MsG0180006046.01.T01:intron 20.0%
!!! CAAAATTAAGTTTTTGCATT+TGG + Chr1:99334007-99334026 None:intergenic 20.0%
!!! GAACAAATTGATTTATTCTT+GGG + Chr1:99336300-99336319 None:intergenic 20.0%
!!! TCTATTTTAAGATAAATTGG+GGG + Chr1:99335741-99335760 None:intergenic 20.0%
!!! TTTTACCAGTTTTTAATCAA+AGG - Chr1:99336908-99336927 MsG0180006046.01.T01:intron 20.0%
! AAAATCTGTTGAAAAACCAA+TGG + Chr1:99339799-99339818 None:intergenic 25.0%
! AAACAAAAAAAGCTAGCTAA+AGG - Chr1:99338739-99338758 MsG0180006046.01.T01:intron 25.0%
! AAATCTGTTGAAAAACCAAT+GGG + Chr1:99339798-99339817 None:intergenic 25.0%
! AACAAAAAAAGCTAGCTAAA+GGG - Chr1:99338740-99338759 MsG0180006046.01.T01:intron 25.0%
! AACAATCAACATTATATGGA+AGG - Chr1:99339422-99339441 MsG0180006046.01.T01:intron 25.0%
! AAGATATTTAATCCCTAAAC+AGG + Chr1:99334238-99334257 None:intergenic 25.0%
! AATGTCCTTTGATTAAAAAC+TGG + Chr1:99336916-99336935 None:intergenic 25.0%
! AATTGTCTTTCCTTCATTAT+AGG - Chr1:99337117-99337136 MsG0180006046.01.T01:intron 25.0%
! ACAATCAACATTATATGGAA+GGG - Chr1:99339423-99339442 MsG0180006046.01.T01:intron 25.0%
! ACTAAATACTATTATGAGGT+TGG - Chr1:99338841-99338860 MsG0180006046.01.T01:intron 25.0%
! ACTATTGTCAATTAATCACT+TGG + Chr1:99338044-99338063 None:intergenic 25.0%
! AGAAGAGAAATACAAGAAAT+GGG - Chr1:99335365-99335384 MsG0180006046.01.T01:intron 25.0%
! ATAACGTGGAATATTCAATT+TGG + Chr1:99338303-99338322 None:intergenic 25.0%
! ATATAACGCAATACATAGAT+TGG + Chr1:99334406-99334425 None:intergenic 25.0%
! ATATCACGAAATCATATGAT+TGG + Chr1:99337707-99337726 None:intergenic 25.0%
! ATATTACCTAAAACCTGTTT+AGG - Chr1:99334222-99334241 MsG0180006046.01.T01:CDS 25.0%
! ATGAACTTGAAACAAAAACA+AGG - Chr1:99336108-99336127 MsG0180006046.01.T01:intron 25.0%
! ATGAATGGTAGAAAGAAATA+TGG - Chr1:99334730-99334749 MsG0180006046.01.T01:CDS 25.0%
! ATTGCATATAATGTTGTGAA+TGG - Chr1:99339551-99339570 MsG0180006046.01.T01:intron 25.0%
! ATTTCAACAAGAAGATTGAA+CGG - Chr1:99337278-99337297 MsG0180006046.01.T01:intron 25.0%
! CAACACTAAATACTATTATG+AGG - Chr1:99338837-99338856 MsG0180006046.01.T01:intron 25.0%
! GAATAACACCATGAAATATT+CGG - Chr1:99336770-99336789 MsG0180006046.01.T01:intron 25.0%
! GATATATTAACATAAACCTC+AGG - Chr1:99336607-99336626 MsG0180006046.01.T01:intron 25.0%
! GATTACAATGTCTTATACTT+AGG - Chr1:99336669-99336688 MsG0180006046.01.T01:CDS 25.0%
! GTACAGTATTAATTAGAGAA+AGG + Chr1:99337875-99337894 None:intergenic 25.0%
! GTATAAGACATTGTAATCTT+TGG + Chr1:99336667-99336686 None:intergenic 25.0%
! TAGAAATCAAGATGGTTATT+CGG - Chr1:99339760-99339779 MsG0180006046.01.T01:intron 25.0%
! TAGCAACAATCAACATTATA+TGG - Chr1:99339418-99339437 MsG0180006046.01.T01:intron 25.0%
! TATATTAACATAAACCTCAG+GGG - Chr1:99336609-99336628 MsG0180006046.01.T01:intron 25.0%
! TATGAATTGAATCCCAAAAA+GGG - Chr1:99338991-99339010 MsG0180006046.01.T01:intron 25.0%
! TATTACCTAAAACCTGTTTA+GGG - Chr1:99334223-99334242 MsG0180006046.01.T01:CDS 25.0%
! TCTGTTCATTATGTCAAAAA+TGG + Chr1:99339717-99339736 None:intergenic 25.0%
! TGAACTTGAAACAAAAACAA+GGG - Chr1:99336109-99336128 MsG0180006046.01.T01:intron 25.0%
! TTATTCATCACACTACTATA+AGG - Chr1:99338803-99338822 MsG0180006046.01.T01:intron 25.0%
! TTGTTAAGTGAACAAATAGA+GGG - Chr1:99336577-99336596 MsG0180006046.01.T01:intron 25.0%
!! AGACAATTTTACCAAAAAAC+CGG + Chr1:99338235-99338254 None:intergenic 25.0%
!! ATATTATTTTCGTTCGCTAT+CGG - Chr1:99337901-99337920 MsG0180006046.01.T01:intron 25.0%
!! CTTTTGATAGAATACCAAAA+GGG + Chr1:99339251-99339270 None:intergenic 25.0%
!! GAGTTTTTGTCATAACTATA+TGG + Chr1:99334148-99334167 None:intergenic 25.0%
!! TCTTTTGATAGAATACCAAA+AGG + Chr1:99339252-99339271 None:intergenic 25.0%
!! TTTACCAGTATGTGTTTTAT+TGG + Chr1:99336277-99336296 None:intergenic 25.0%
!! TTTGTAGAGTTGATTGAAAA+TGG - Chr1:99336035-99336054 MsG0180006046.01.T01:intron 25.0%
!!! AAACAGGTTTTAGGTAATAT+AGG + Chr1:99334222-99334241 None:intergenic 25.0%
!!! ATTGGTTTTTCAACAGATTT+TGG - Chr1:99339798-99339817 MsG0180006046.01.T01:intron 25.0%
!!! GTTTTCTAGAAATTGATTGA+GGG + Chr1:99336074-99336093 None:intergenic 25.0%
!!! TATATTTTGCTATGCACATA+TGG - Chr1:99337479-99337498 MsG0180006046.01.T01:intron 25.0%
!!! TGTTTTCTAGAAATTGATTG+AGG + Chr1:99336075-99336094 None:intergenic 25.0%
!!! TTTAGCTAGCTTTTTTTGTT+TGG + Chr1:99338740-99338759 None:intergenic 25.0%
AAACAAATGGGTATTTCTCA+AGG - Chr1:99338439-99338458 MsG0180006046.01.T01:CDS 30.0%
AAATCATGACAATGTTAGGT+GGG - Chr1:99339061-99339080 MsG0180006046.01.T01:intron 30.0%
AAATGGCTAATGAAAAGAAG+AGG - Chr1:99335205-99335224 MsG0180006046.01.T01:intron 30.0%
ACCTAACATTGTCATGATTT+GGG + Chr1:99339061-99339080 None:intergenic 30.0%
AGATTCTTCAATTACTCATC+TGG - Chr1:99338778-99338797 MsG0180006046.01.T01:intron 30.0%
AGTGAAGATGCAAATTGATT+TGG + Chr1:99335910-99335929 None:intergenic 30.0%
ATTATTAGCCCAACAAATCA+TGG + Chr1:99336393-99336412 None:intergenic 30.0%
CAATCAACATTATATGGAAG+GGG - Chr1:99339424-99339443 MsG0180006046.01.T01:intron 30.0%
CAGAAGAGAAATACAAGAAA+TGG - Chr1:99335364-99335383 MsG0180006046.01.T01:intron 30.0%
CGTAAGATCATTTGATTCAA+TGG - Chr1:99335871-99335890 MsG0180006046.01.T01:intron 30.0%
CTATGAATTGAATCCCAAAA+AGG - Chr1:99338990-99339009 MsG0180006046.01.T01:intron 30.0%
GAAATATAAATTGTGATCCC+TGG - Chr1:99336342-99336361 MsG0180006046.01.T01:CDS 30.0%
GAGATACTTCTCAATCATTA+GGG - Chr1:99338405-99338424 MsG0180006046.01.T01:CDS 30.0%
GTACTTTGTGATGCTTTATA+AGG + Chr1:99339224-99339243 None:intergenic 30.0%
GTTATAGTAGATGCTATGAA+TGG - Chr1:99334715-99334734 MsG0180006046.01.T01:intron 30.0%
GTTGTTAAGTGAACAAATAG+AGG - Chr1:99336576-99336595 MsG0180006046.01.T01:intron 30.0%
TAAAACACAAATTGTCGTCA+TGG + Chr1:99335828-99335847 None:intergenic 30.0%
TAATCAGTACATTCGTGAAA+AGG + Chr1:99334542-99334561 None:intergenic 30.0%
TCACACTACTATAAGGAATT+TGG - Chr1:99338810-99338829 MsG0180006046.01.T01:intron 30.0%
TCTTGTTGAAATGCTCATTA+CGG + Chr1:99337270-99337289 None:intergenic 30.0%
TGAGATACTTCTCAATCATT+AGG - Chr1:99338404-99338423 MsG0180006046.01.T01:CDS 30.0%
TGTTAAGTGAACAAATAGAG+GGG - Chr1:99336578-99336597 MsG0180006046.01.T01:intron 30.0%
TTGATCCACTTATTGTGATA+AGG - Chr1:99334779-99334798 MsG0180006046.01.T01:CDS 30.0%
TTGTATATCTCTGTGTATAC+AGG + Chr1:99335491-99335510 None:intergenic 30.0%
TTGTGTAATATGAACCTGTT+GGG + Chr1:99338626-99338645 None:intergenic 30.0%
TTTATAACTCCTCCTGAAAT+TGG - Chr1:99338892-99338911 MsG0180006046.01.T01:intron 30.0%
TTTCAACAAGAAGATTGAAC+GGG - Chr1:99337279-99337298 MsG0180006046.01.T01:intron 30.0%
TTTGTTAGGAATGTTCAGAA+GGG - Chr1:99338544-99338563 MsG0180006046.01.T01:intron 30.0%
! AATTCCGAATTCTGAGAAAT+CGG - Chr1:99334321-99334340 MsG0180006046.01.T01:CDS 30.0%
! CTCATTGTTATTCTAATGCT+GGG - Chr1:99337395-99337414 MsG0180006046.01.T01:intron 30.0%
! CTTTATAAGGAGTATGGTAT+CGG + Chr1:99339211-99339230 None:intergenic 30.0%
! GTGAAGATGCAAATTGATTT+GGG + Chr1:99335909-99335928 None:intergenic 30.0%
! TCACTATCAGAATTTTCATC+AGG + Chr1:99334976-99334995 None:intergenic 30.0%
! TCTCATTGTTATTCTAATGC+TGG - Chr1:99337394-99337413 MsG0180006046.01.T01:intron 30.0%
! TGATTGTTGCTATTATACCA+TGG + Chr1:99339410-99339429 None:intergenic 30.0%
! TTAATCCCTAAACAGGTTTT+AGG + Chr1:99334231-99334250 None:intergenic 30.0%
! TTTTGTTAGGAATGTTCAGA+AGG - Chr1:99338543-99338562 MsG0180006046.01.T01:intron 30.0%
!! AATTTGGTGTTTGTGTGTAA+TGG - Chr1:99338505-99338524 MsG0180006046.01.T01:intron 30.0%
!! GTTGATGAAGAAGTGTTTAT+AGG - Chr1:99336745-99336764 MsG0180006046.01.T01:intron 30.0%
!! TGTCATTTAAAAGTACCTCA+GGG + Chr1:99335692-99335711 None:intergenic 30.0%
!!! ACTAGCTCTAGTTTTGAATT+TGG - Chr1:99338489-99338508 MsG0180006046.01.T01:intron 30.0%
!!! ATTTTAAGATAAATTGGGGG+AGG + Chr1:99335738-99335757 None:intergenic 30.0%
!!! CAATTTGTGTTTTAGAGTGT+CGG - Chr1:99335834-99335853 MsG0180006046.01.T01:intron 30.0%
AAACTGTGCATTCAATGTCT+TGG - Chr1:99334028-99334047 MsG0180006046.01.T01:CDS 35.0%
AATATACACCACAGTACCAA+TGG - Chr1:99339318-99339337 MsG0180006046.01.T01:intron 35.0%
AATGGAATTGGCAAATAACG+TGG + Chr1:99338317-99338336 None:intergenic 35.0%
ACATTCGTGAAAAGGATTAC+TGG + Chr1:99334534-99334553 None:intergenic 35.0%
ACCTTGTACTTAACAAACCA+TGG + Chr1:99339473-99339492 None:intergenic 35.0%
ACTATTATGAGGTTGGACTT+GGG - Chr1:99338848-99338867 MsG0180006046.01.T01:intron 35.0%
ACTTGTAGAGTTTGTAAGCT+TGG - Chr1:99335578-99335597 MsG0180006046.01.T01:intron 35.0%
AGTTCCGTAAGAACTTCTAA+AGG + Chr1:99336868-99336887 None:intergenic 35.0%
ATATATGCTTGACACACAAG+AGG - Chr1:99335338-99335357 MsG0180006046.01.T01:intron 35.0%
ATCAAGTCAATAGGACTGTT+TGG + Chr1:99338112-99338131 None:intergenic 35.0%
ATCATACTATCCGTATCCAT+GGG - Chr1:99333912-99333931 MsG0180006046.01.T01:CDS 35.0%
ATCATATATATCCAACGGAG+TGG - Chr1:99333881-99333900 MsG0180006046.01.T01:CDS 35.0%
ATCCTTAACTTATGCCCTTA+GGG - Chr1:99334106-99334125 MsG0180006046.01.T01:CDS 35.0%
ATGGATACTTCAATACCCAT+GGG - Chr1:99333813-99333832 MsG0180006046.01.T01:CDS 35.0%
ATTACACAAGGTGATCTTGT+TGG - Chr1:99338637-99338656 MsG0180006046.01.T01:CDS 35.0%
CAAAGTTTCTCACAATTGGA+TGG + Chr1:99336251-99336270 None:intergenic 35.0%
CAAATCATGACAATGTTAGG+TGG - Chr1:99339060-99339079 MsG0180006046.01.T01:intron 35.0%
CAACAGGTTCATATTACACA+AGG - Chr1:99338625-99338644 MsG0180006046.01.T01:CDS 35.0%
CACCTAACATTGTCATGATT+TGG + Chr1:99339062-99339081 None:intergenic 35.0%
CATCCAATTGTGAGAAACTT+TGG - Chr1:99336249-99336268 MsG0180006046.01.T01:CDS 35.0%
CATGTGTTTGCATGAATACT+TGG - Chr1:99336703-99336722 MsG0180006046.01.T01:CDS 35.0%
CGAATAAGGTTTGAATGGTT+TGG + Chr1:99339186-99339205 None:intergenic 35.0%
CGGGTATCATATATATCCAA+CGG - Chr1:99333876-99333895 MsG0180006046.01.T01:CDS 35.0%
CTAATGCTGGGAAGTTTAAA+TGG - Chr1:99337407-99337426 MsG0180006046.01.T01:intron 35.0%
CTCCAATGTGTATTTACCAA+AGG + Chr1:99337305-99337324 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + Chr1:99333984-99334003 None:intergenic 35.0%
CTTGTGTAATATGAACCTGT+TGG + Chr1:99338627-99338646 None:intergenic 35.0%
GAAATACAAGAAATGGGAGA+AGG - Chr1:99335371-99335390 MsG0180006046.01.T01:intron 35.0%
GACGATAGGAAGAAAAAGAT+TGG - Chr1:99335276-99335295 MsG0180006046.01.T01:intron 35.0%
GATCCAAAGTTTCTCACAAT+TGG + Chr1:99336255-99336274 None:intergenic 35.0%
GATCTAGACCGAATATTTCA+TGG + Chr1:99336781-99336800 None:intergenic 35.0%
GATTAAAATAATCTCGAGCG+AGG - Chr1:99337324-99337343 MsG0180006046.01.T01:intron 35.0%
GATTCAAGTCATTTGCATCT+AGG + Chr1:99337622-99337641 None:intergenic 35.0%
GCTAAAATGGTATTCAACGA+TGG - Chr1:99335081-99335100 MsG0180006046.01.T01:CDS 35.0%
GGAAAACTTCTTGATGCAAA+TGG - Chr1:99335297-99335316 MsG0180006046.01.T01:intron 35.0%
GGATCCAATAAAACACATAC+TGG - Chr1:99336270-99336289 MsG0180006046.01.T01:CDS 35.0%
GGGTTTACAGTTTATCAGTA+AGG - Chr1:99336129-99336148 MsG0180006046.01.T01:intron 35.0%
GGTACAAGAACTTAAGGATA+GGG - Chr1:99337174-99337193 MsG0180006046.01.T01:intron 35.0%
GTAAATGCAAAGTCCAATGT+CGG - Chr1:99338065-99338084 MsG0180006046.01.T01:intron 35.0%
GTATACATAACCATTGGAGA+TGG - Chr1:99339608-99339627 MsG0180006046.01.T01:intron 35.0%
GTATTCATGCAAACACATGT+AGG + Chr1:99336702-99336721 None:intergenic 35.0%
GTCAATTAATCACTTGGTCA+AGG + Chr1:99338038-99338057 None:intergenic 35.0%
GTCTGTGAGTGAAAACAAAT+GGG - Chr1:99338427-99338446 MsG0180006046.01.T01:CDS 35.0%
GTGATGCTTTATAAGGAGTA+TGG + Chr1:99339217-99339236 None:intergenic 35.0%
GTTTCTGTCCTGTTAACTTT+AGG + Chr1:99339359-99339378 None:intergenic 35.0%
TAATGAAAAGAAGAGGATGG+AGG - Chr1:99335212-99335231 MsG0180006046.01.T01:intron 35.0%
TACTATTATGAGGTTGGACT+TGG - Chr1:99338847-99338866 MsG0180006046.01.T01:intron 35.0%
TAGATGTGAGTTTAACAGCA+AGG - Chr1:99336547-99336566 MsG0180006046.01.T01:intron 35.0%
TATCATACTATCCGTATCCA+TGG - Chr1:99333911-99333930 MsG0180006046.01.T01:CDS 35.0%
TCAATGTAAAACATGAGCAG+TGG + Chr1:99339840-99339859 None:intergenic 35.0%
TCAGAATTCGGAATTCGATT+CGG + Chr1:99334316-99334335 None:intergenic 35.0%
TCATATATATCCAACGGAGT+GGG - Chr1:99333882-99333901 MsG0180006046.01.T01:CDS 35.0%
TCCCAAATCATGACAATGTT+AGG - Chr1:99339057-99339076 MsG0180006046.01.T01:intron 35.0%
TCTCCAATGGTTATGTATAC+AGG + Chr1:99339608-99339627 None:intergenic 35.0%
TGCATTAGAACAATCAACCA+AGG + Chr1:99339383-99339402 None:intergenic 35.0%
TGGTACAAGAACTTAAGGAT+AGG - Chr1:99337173-99337192 MsG0180006046.01.T01:intron 35.0%
TGTGTAATATGAACCTGTTG+GGG + Chr1:99338625-99338644 None:intergenic 35.0%
TTACACAAGGTGATCTTGTT+GGG - Chr1:99338638-99338657 MsG0180006046.01.T01:CDS 35.0%
TTGTACTTCTGCACATCAAT+GGG - Chr1:99337081-99337100 MsG0180006046.01.T01:intron 35.0%
TTGTTCTAATGCATTCACCA+TGG - Chr1:99339390-99339409 MsG0180006046.01.T01:CDS 35.0%
TTTGTACTTCTGCACATCAA+TGG - Chr1:99337080-99337099 MsG0180006046.01.T01:intron 35.0%
TTTGTGAACCACATTGAAGT+TGG + Chr1:99335539-99335558 None:intergenic 35.0%
! AATCACGGTGTTAAGTTGTA+AGG + Chr1:99335774-99335793 None:intergenic 35.0%
! ACAACACTGTTTTCCCTTTT+TGG + Chr1:99339007-99339026 None:intergenic 35.0%
! ATCACGGTGTTAAGTTGTAA+GGG + Chr1:99335773-99335792 None:intergenic 35.0%
! CAACACTGTTTTCCCTTTTT+GGG + Chr1:99339006-99339025 None:intergenic 35.0%
! GAACAAAGCCACTTCTTTTA+TGG + Chr1:99338177-99338196 None:intergenic 35.0%
! GGAGCTGATTGATCTTTTAT+AGG + Chr1:99339587-99339606 None:intergenic 35.0%
! TCAGAATTTTCATCAGGCTT+TGG + Chr1:99334970-99334989 None:intergenic 35.0%
! TGTGCCTTTAGAAGTTCTTA+CGG - Chr1:99336861-99336880 MsG0180006046.01.T01:intron 35.0%
! TTGAGTTTGAAGCATTTCCT+TGG - Chr1:99337594-99337613 MsG0180006046.01.T01:intron 35.0%
! TTTTCCATATGCTGAATACG+AGG + Chr1:99339300-99339319 None:intergenic 35.0%
!! AAATGGACTGGATATGACAA+AGG - Chr1:99335314-99335333 MsG0180006046.01.T01:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - Chr1:99333967-99333986 MsG0180006046.01.T01:CDS 35.0%
!! ATTGATTTGGGACTAGAGTT+CGG + Chr1:99335897-99335916 None:intergenic 35.0%
!! CATCAATGGGTTATTGTATG+AGG - Chr1:99337094-99337113 MsG0180006046.01.T01:intron 35.0%
!! GCTATCGGATATCGATTTAT+AGG - Chr1:99337916-99337935 MsG0180006046.01.T01:intron 35.0%
!! GTCATTTAAAAGTACCTCAG+GGG + Chr1:99335691-99335710 None:intergenic 35.0%
!! GTGTCATTTAAAAGTACCTC+AGG + Chr1:99335693-99335712 None:intergenic 35.0%
!! TAGCTTTAACGGAACAATCA+CGG + Chr1:99335789-99335808 None:intergenic 35.0%
!!! ATCTTATCCTCTGAGGTTTT+TGG + Chr1:99337145-99337164 None:intergenic 35.0%
!!! GTTTTTGGTGCCTATAATGA+AGG + Chr1:99337130-99337149 None:intergenic 35.0%
!!! TTTTTTGCTTCTTGCTGACA+GGG + Chr1:99335171-99335190 None:intergenic 35.0%
!!! TTTTTTTGCTTCTTGCTGAC+AGG + Chr1:99335172-99335191 None:intergenic 35.0%
AAAAGAAGAGCCACCAGAAA+AGG + Chr1:99335962-99335981 None:intergenic 40.0%
AAAGAAGAGCCACCAGAAAA+GGG + Chr1:99335961-99335980 None:intergenic 40.0%
AAAGCGAACCAAGAACATTG+AGG - Chr1:99336951-99336970 MsG0180006046.01.T01:intron 40.0%
AAGATACGATTGAACGAACC+TGG + Chr1:99334373-99334392 None:intergenic 40.0%
AAGTCAATAGGACTGTTTGG+TGG + Chr1:99338109-99338128 None:intergenic 40.0%
AATCGAATTTGAAGACGCTG+AGG - Chr1:99334274-99334293 MsG0180006046.01.T01:CDS 40.0%
AATGTTAGGTGGGATACTTG+GGG - Chr1:99339071-99339090 MsG0180006046.01.T01:CDS 40.0%
ACAATGTTAGGTGGGATACT+TGG - Chr1:99339069-99339088 MsG0180006046.01.T01:intron 40.0%
ACATAACCATTGGAGATGGA+GGG - Chr1:99339612-99339631 MsG0180006046.01.T01:intron 40.0%
ACTTCTTGATGCAAATGGAC+TGG - Chr1:99335302-99335321 MsG0180006046.01.T01:intron 40.0%
AGAGGATAAGATTGACAGGA+TGG - Chr1:99337153-99337172 MsG0180006046.01.T01:intron 40.0%
AGATACGATTGAACGAACCT+GGG + Chr1:99334372-99334391 None:intergenic 40.0%
AGCTGGCATAGAAATCAAGA+TGG - Chr1:99339752-99339771 MsG0180006046.01.T01:intron 40.0%
AGGAGCTACCTAAAGTTAAC+AGG - Chr1:99339348-99339367 MsG0180006046.01.T01:CDS 40.0%
ATGCTGGGAAGTTTAAATGG+TGG - Chr1:99337410-99337429 MsG0180006046.01.T01:intron 40.0%
ATTAACATAAACCTCAGGGG+AGG - Chr1:99336612-99336631 MsG0180006046.01.T01:intron 40.0%
CAATGTTAGGTGGGATACTT+GGG - Chr1:99339070-99339089 MsG0180006046.01.T01:CDS 40.0%
CAGGATGGTACAAGAACTTA+AGG - Chr1:99337168-99337187 MsG0180006046.01.T01:intron 40.0%
CATATATATCCAACGGAGTG+GGG - Chr1:99333883-99333902 MsG0180006046.01.T01:CDS 40.0%
CCACTTATTGTGATAAGGCT+TGG - Chr1:99334784-99334803 MsG0180006046.01.T01:CDS 40.0%
CCATACACATTTGGTCTCAT+AGG - Chr1:99338925-99338944 MsG0180006046.01.T01:intron 40.0%
CCTATGAGACCAAATGTGTA+TGG + Chr1:99338928-99338947 None:intergenic 40.0%
CTAACCAGATTGAGTGAGTT+TGG + Chr1:99334588-99334607 None:intergenic 40.0%
GACAGTATACCTTTCCATAC+TGG + Chr1:99337044-99337063 None:intergenic 40.0%
GATCCTTAACTTATGCCCTT+AGG - Chr1:99334105-99334124 MsG0180006046.01.T01:CDS 40.0%
GATGGAGTTGAGAGCTAAAA+TGG - Chr1:99335068-99335087 MsG0180006046.01.T01:CDS 40.0%
GCTCCTGTATACATAACCAT+TGG - Chr1:99339602-99339621 MsG0180006046.01.T01:intron 40.0%
GCTTCTAAACTTGTGCCTTA+AGG + Chr1:99333985-99334004 None:intergenic 40.0%
GGCCTTTGGTAAATACACAT+TGG - Chr1:99337300-99337319 MsG0180006046.01.T01:intron 40.0%
GGCTAATGAAAAGAAGAGGA+TGG - Chr1:99335209-99335228 MsG0180006046.01.T01:intron 40.0%
GGTCTGACTATCAAGTCAAT+AGG + Chr1:99338121-99338140 None:intergenic 40.0%
GGTCTGTGAGTGAAAACAAA+TGG - Chr1:99338426-99338445 MsG0180006046.01.T01:CDS 40.0%
GTACTCGATATCACAAACTC+TGG + Chr1:99335611-99335630 None:intergenic 40.0%
TAAGTGAACAAATAGAGGGG+AGG - Chr1:99336581-99336600 MsG0180006046.01.T01:intron 40.0%
TACATAACCATTGGAGATGG+AGG - Chr1:99339611-99339630 MsG0180006046.01.T01:intron 40.0%
TACATCGACCTCAATGTTCT+TGG + Chr1:99336962-99336981 None:intergenic 40.0%
TCAAGATGGTTATTCGGTTG+AGG - Chr1:99339766-99339785 MsG0180006046.01.T01:intron 40.0%
TCATTTGCATCTAGGTACCA+AGG + Chr1:99337614-99337633 None:intergenic 40.0%
TGAGAGTAATGTATGAGCCA+TGG - Chr1:99339453-99339472 MsG0180006046.01.T01:intron 40.0%
TGCAATATTCGACACACGTT+CGG + Chr1:99339537-99339556 None:intergenic 40.0%
TGGCTTATCAACCATGGATA+TGG - Chr1:99339114-99339133 MsG0180006046.01.T01:CDS 40.0%
TTAACAGGACAGAAACTCCT+TGG - Chr1:99339363-99339382 MsG0180006046.01.T01:CDS 40.0%
TTATGGCAACTAGACTTGAG+CGG - Chr1:99334646-99334665 MsG0180006046.01.T01:intron 40.0%
TTCAAGTCTCCAGTATGGAA+AGG - Chr1:99337032-99337051 MsG0180006046.01.T01:intron 40.0%
TTCAGCTCACATCATTGTCT+TGG - Chr1:99339274-99339293 MsG0180006046.01.T01:intron 40.0%
TTTCCTACAGTCCATATCCA+TGG + Chr1:99339128-99339147 None:intergenic 40.0%
TTTCTGTGCCAACTTCAATG+TGG - Chr1:99335528-99335547 MsG0180006046.01.T01:intron 40.0%
TTTGGTCTCATAGGAGATCT+TGG - Chr1:99338934-99338953 MsG0180006046.01.T01:intron 40.0%
! AAAGTGATGGTTAGAGCATC+CGG - Chr1:99338213-99338232 MsG0180006046.01.T01:intron 40.0%
! ATTGATTTCGCCCCAGAAAT+TGG - Chr1:99339155-99339174 MsG0180006046.01.T01:CDS 40.0%
! CCAAGCCTTATCACAATAAG+TGG + Chr1:99334787-99334806 None:intergenic 40.0%
! GCACAACTAGTGCTTTTGTT+AGG - Chr1:99338530-99338549 MsG0180006046.01.T01:intron 40.0%
! GGAACACAACAAGACAGTTT+TGG - Chr1:99338869-99338888 MsG0180006046.01.T01:intron 40.0%
! GGGAGGTTTAAAACTAGAAG+GGG + Chr1:99335721-99335740 None:intergenic 40.0%
! GGGGAGGTTTAAAACTAGAA+GGG + Chr1:99335722-99335741 None:intergenic 40.0%
! GTTTGGTTTCGCCAATTTCT+GGG + Chr1:99339169-99339188 None:intergenic 40.0%
! TCACGGTGTTAAGTTGTAAG+GGG + Chr1:99335772-99335791 None:intergenic 40.0%
! TTGGTGTTTGTGTGTAATGG+AGG - Chr1:99338508-99338527 MsG0180006046.01.T01:intron 40.0%
! TTTGGTTTCGCCAATTTCTG+GGG + Chr1:99339168-99339187 None:intergenic 40.0%
!! AAGGTTGATGTTGTGTATGC+TGG - Chr1:99339488-99339507 MsG0180006046.01.T01:intron 40.0%
!! AAGTTTTCATGTGCCGACAT+TGG + Chr1:99338081-99338100 None:intergenic 40.0%
!! AGCACCGATTTCTCAGAATT+CGG + Chr1:99334328-99334347 None:intergenic 40.0%
!! CACAAAGTACTTCACCCTTT+TGG - Chr1:99339234-99339253 MsG0180006046.01.T01:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + Chr1:99334123-99334142 None:intergenic 40.0%
!! GCCATGGTTTGTTAAGTACA+AGG - Chr1:99339469-99339488 MsG0180006046.01.T01:intron 40.0%
!! GGGAAAACAGTGTTGTTTGT+TGG - Chr1:99339011-99339030 MsG0180006046.01.T01:intron 40.0%
!! TATGCACATATGGAGCATTG+TGG - Chr1:99337489-99337508 MsG0180006046.01.T01:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + Chr1:99334124-99334143 None:intergenic 40.0%
!!! CTTTGTTTTCTATGGTGCGT+GGG + Chr1:99338142-99338161 None:intergenic 40.0%
!!! GATGTTTTTGCTGTTCCTTC+TGG - Chr1:99338589-99338608 MsG0180006046.01.T01:CDS 40.0%
!!! TGGCACTCCTTTGTTTTCTA+TGG + Chr1:99338150-99338169 None:intergenic 40.0%
!!! TGGCTTTGTTCTTTTCTCTG+CGG - Chr1:99338186-99338205 MsG0180006046.01.T01:intron 40.0%
AAATCATGGACGCATGGAAG+AGG + Chr1:99336379-99336398 None:intergenic 45.0%
AAGAAGAGCCACCAGAAAAG+GGG + Chr1:99335960-99335979 None:intergenic 45.0%
AAGAAGATTGAACGGGCCTT+TGG - Chr1:99337286-99337305 MsG0180006046.01.T01:intron 45.0%
AAGGTTTGTAGAAAGGAGCG+TGG - Chr1:99339094-99339113 MsG0180006046.01.T01:CDS 45.0%
ACAGTACCAATGGCTTGAAC+AGG - Chr1:99339328-99339347 MsG0180006046.01.T01:intron 45.0%
ACATCAGGACCAATTTCAGG+AGG + Chr1:99338904-99338923 None:intergenic 45.0%
ACTGCAGAAGCAAATCAGTC+CGG + Chr1:99337360-99337379 None:intergenic 45.0%
AGATGAGTTGTCTCCTGATG+AGG - Chr1:99334928-99334947 MsG0180006046.01.T01:CDS 45.0%
ATAGGCACCAAAAACCTCAG+AGG - Chr1:99337135-99337154 MsG0180006046.01.T01:intron 45.0%
ATCATCATGCATCCCTCATC+AGG + Chr1:99334944-99334963 None:intergenic 45.0%
ATTTACACTAACCTCCCCTG+AGG + Chr1:99336626-99336645 None:intergenic 45.0%
CAAGCCAAACTCACTCAATC+TGG - Chr1:99334581-99334600 MsG0180006046.01.T01:CDS 45.0%
CACACGTTCGGTTCTTTCAT+AGG + Chr1:99339525-99339544 None:intergenic 45.0%
CATCAGGAGACAACTCATCT+GGG + Chr1:99334928-99334947 None:intergenic 45.0%
CCAAATGTGTATGGCACATC+AGG + Chr1:99338919-99338938 None:intergenic 45.0%
CCACGCACCATAGAAAACAA+AGG - Chr1:99338140-99338159 MsG0180006046.01.T01:intron 45.0%
CCTCAGAGGATAAGATTGAC+AGG - Chr1:99337149-99337168 MsG0180006046.01.T01:intron 45.0%
CCTGATGTGCCATACACATT+TGG - Chr1:99338916-99338935 MsG0180006046.01.T01:intron 45.0%
CCTGTCAATCTTATCCTCTG+AGG + Chr1:99337152-99337171 None:intergenic 45.0%
CGGTGCGAATAAGGTTTGAA+TGG + Chr1:99339191-99339210 None:intergenic 45.0%
CTGGGGCGAAATCAATTTCA+TGG + Chr1:99339151-99339170 None:intergenic 45.0%
CTTGGGGAAGGTTTGTAGAA+AGG - Chr1:99339087-99339106 MsG0180006046.01.T01:CDS 45.0%
GAAAAGGATTACTGGCGTTC+CGG + Chr1:99334526-99334545 None:intergenic 45.0%
GAAAGCAGTGATCGTATCGT+GGG - Chr1:99338660-99338679 MsG0180006046.01.T01:CDS 45.0%
GAACACATGCTCACTATAGC+TGG - Chr1:99339735-99339754 MsG0180006046.01.T01:intron 45.0%
GAGCAGTGGAATCATCAACT+GGG + Chr1:99339826-99339845 None:intergenic 45.0%
GATGAGTTGTCTCCTGATGA+GGG - Chr1:99334929-99334948 MsG0180006046.01.T01:CDS 45.0%
GATGCTTCAAGTCTCCAGTA+TGG - Chr1:99337027-99337046 MsG0180006046.01.T01:intron 45.0%
GCCATGTGCCATAAAAGAAG+TGG - Chr1:99338166-99338185 MsG0180006046.01.T01:intron 45.0%
GTGATATCAATGGGTACCCA+TGG + Chr1:99333931-99333950 None:intergenic 45.0%
TCAATGGGTACCCATGGATA+CGG + Chr1:99333925-99333944 None:intergenic 45.0%
TCAGAAGTTGCACAAGCTAG+CGG - Chr1:99334878-99334897 MsG0180006046.01.T01:CDS 45.0%
TCATCAGGAGACAACTCATC+TGG + Chr1:99334929-99334948 None:intergenic 45.0%
TCTCTGAATGCTGAGTACTC+TGG + Chr1:99339677-99339696 None:intergenic 45.0%
TCTCTGCCAGACAGAAAAAG+TGG - Chr1:99335046-99335065 MsG0180006046.01.T01:CDS 45.0%
TCTCTGCGGTACAAAAGTGA+TGG - Chr1:99338200-99338219 MsG0180006046.01.T01:intron 45.0%
TGAGCAGTGGAATCATCAAC+TGG + Chr1:99339827-99339846 None:intergenic 45.0%
TGATGAGGGATGCATGATGA+TGG - Chr1:99334943-99334962 MsG0180006046.01.T01:CDS 45.0%
TGCCAGACAGAAAAAGTGGA+TGG - Chr1:99335050-99335069 MsG0180006046.01.T01:CDS 45.0%
TGGTTATAATGCTCCCCAAC+AGG - Chr1:99338609-99338628 MsG0180006046.01.T01:CDS 45.0%
TGTTCAAGCCATTGGTACTG+TGG + Chr1:99339329-99339348 None:intergenic 45.0%
TTCTGTCTGGCAGAGAGTTT+GGG + Chr1:99335042-99335061 None:intergenic 45.0%
TTGGCCTCGTATTCAGCATA+TGG - Chr1:99339293-99339312 MsG0180006046.01.T01:intron 45.0%
TTTCTGTCTGGCAGAGAGTT+TGG + Chr1:99335043-99335062 None:intergenic 45.0%
! ACTGGAGACTTGAAGCATCA+CGG + Chr1:99337026-99337045 None:intergenic 45.0%
! AGAAACGTAGGGCATTTAGC+AGG - Chr1:99337200-99337219 MsG0180006046.01.T01:intron 45.0%
! AGAGTACTCAGCATTCAGAG+AGG - Chr1:99339676-99339695 MsG0180006046.01.T01:intron 45.0%
! CAACCATGGATATGGACTGT+AGG - Chr1:99339122-99339141 MsG0180006046.01.T01:CDS 45.0%
! GAAGCATCACGGTAGAATTC+TGG + Chr1:99337015-99337034 None:intergenic 45.0%
! GCCACTTCTTTTATGGCACA+TGG + Chr1:99338170-99338189 None:intergenic 45.0%
! GGGGGAGGTTTAAAACTAGA+AGG + Chr1:99335723-99335742 None:intergenic 45.0%
! GGTTTGGTTTCGCCAATTTC+TGG + Chr1:99339170-99339189 None:intergenic 45.0%
! TCCATGCGTCCATGATTTGT+TGG - Chr1:99336381-99336400 MsG0180006046.01.T01:CDS 45.0%
! TGCCCTAAGGGCATAAGTTA+AGG + Chr1:99334111-99334130 None:intergenic 45.0%
!! AAATGGTGGATTGCGTTCTC+TGG - Chr1:99337424-99337443 MsG0180006046.01.T01:intron 45.0%
!! AATTACACTGACTTCCCCTG+AGG - Chr1:99335674-99335693 MsG0180006046.01.T01:intron 45.0%
!! CCATGCGTCCATGATTTGTT+GGG - Chr1:99336382-99336401 MsG0180006046.01.T01:CDS 45.0%
!! GTATGGTATCGGTGCGAATA+AGG + Chr1:99339200-99339219 None:intergenic 45.0%
!! TGGGGAGCATTATAACCAGA+AGG + Chr1:99338607-99338626 None:intergenic 45.0%
!! TTAGAGTGTCGGTGTGGATT+TGG - Chr1:99335845-99335864 MsG0180006046.01.T01:intron 45.0%
!!! CCTTTGTTTTCTATGGTGCG+TGG + Chr1:99338143-99338162 None:intergenic 45.0%
!!! CTCCATCCACTTTTTCTGTC+TGG + Chr1:99335055-99335074 None:intergenic 45.0%
!!! GGTTAGAGCATCCGGTTTTT+TGG - Chr1:99338221-99338240 MsG0180006046.01.T01:intron 45.0%
!!! TGTGTTTTAGAGTGTCGGTG+TGG - Chr1:99335839-99335858 MsG0180006046.01.T01:intron 45.0%
!!! AATTTTTGAAATTATAAATT+AGG - Chr1:99334432-99334451 MsG0180006046.01.T01:CDS 5.0%
!!! ATTTTTGAAATTATAAATTA+GGG - Chr1:99334433-99334452 MsG0180006046.01.T01:CDS 5.0%
AACATACCATCCCAGCCGAA+TGG + Chr1:99335405-99335424 None:intergenic 50.0%
AAGAGGCCACAACAAGTCCA+GGG + Chr1:99336362-99336381 None:intergenic 50.0%
AAGGTTCCCTCCATCTCCAA+TGG + Chr1:99339621-99339640 None:intergenic 50.0%
AATGCTGAGTACTCTGGCTG+TGG + Chr1:99339671-99339690 None:intergenic 50.0%
AGCAGAAGTGGCTTGACGAT+AGG - Chr1:99335262-99335281 MsG0180006046.01.T01:intron 50.0%
AGGAGACAACTCATCTGGGA+TGG + Chr1:99334924-99334943 None:intergenic 50.0%
AGGATAGGGACGAGAAACGT+AGG - Chr1:99337188-99337207 MsG0180006046.01.T01:intron 50.0%
AGTGGATACTCTCGAGGGTA+CGG - Chr1:99333845-99333864 MsG0180006046.01.T01:CDS 50.0%
ATCCACTATGCGGATACCCA+TGG + Chr1:99333832-99333851 None:intergenic 50.0%
ATTACTGGCGTTCCGGCAAT+CGG + Chr1:99334519-99334538 None:intergenic 50.0%
ATTCGACCCTGGTTCATCCT+CGG + Chr1:99338689-99338708 None:intergenic 50.0%
ATTGGAGATGGAGGGAACCT+TGG - Chr1:99339620-99339639 MsG0180006046.01.T01:intron 50.0%
CCCAACAAATCATGGACGCA+TGG + Chr1:99336385-99336404 None:intergenic 50.0%
CGTGTGATCACTTGCTCAGT+AGG + Chr1:99337974-99337993 None:intergenic 50.0%
GAAACACCCCTAGACTCTGT+TGG + Chr1:99335240-99335259 None:intergenic 50.0%
GAGAAGGATCCTGCTCCATT+CGG - Chr1:99335387-99335406 MsG0180006046.01.T01:intron 50.0%
GAGCCATCCTCATTGTTCTC+TGG + Chr1:99335015-99335034 None:intergenic 50.0%
GCAACTAGACTTGAGCGGTT+TGG - Chr1:99334651-99334670 MsG0180006046.01.T01:intron 50.0%
GCTCCAGAGAACAATGAGGA+TGG - Chr1:99335009-99335028 MsG0180006046.01.T01:CDS 50.0%
GCTGACAGGGAAACAAAGCA+AGG + Chr1:99335158-99335177 None:intergenic 50.0%
GGAAAGCAGTGATCGTATCG+TGG - Chr1:99338659-99338678 MsG0180006046.01.T01:CDS 50.0%
GGATAGGGACGAGAAACGTA+GGG - Chr1:99337189-99337208 MsG0180006046.01.T01:intron 50.0%
GGCACATCAGGACCAATTTC+AGG + Chr1:99338907-99338926 None:intergenic 50.0%
GTAGCTCCTGTTCAAGCCAT+TGG + Chr1:99339337-99339356 None:intergenic 50.0%
TATATCCAACGGAGTGGGGA+CGG - Chr1:99333887-99333906 MsG0180006046.01.T01:CDS 50.0%
TCACTCTCCCACTCTATCTC+TGG - Chr1:99335925-99335944 MsG0180006046.01.T01:intron 50.0%
TCCACTATGCGGATACCCAT+GGG + Chr1:99333831-99333850 None:intergenic 50.0%
TCTGTCTGGCAGAGAGTTTG+GGG + Chr1:99335041-99335060 None:intergenic 50.0%
TTAGGTGGGATACTTGGGGA+AGG - Chr1:99339075-99339094 MsG0180006046.01.T01:CDS 50.0%
! TGGCTGTGGTTCTGTCATGT+TGG + Chr1:99339657-99339676 None:intergenic 50.0%
!! CCTCGAGAGTATCCACTATG+CGG + Chr1:99333842-99333861 None:intergenic 50.0%
!! CGCATAGTGGATACTCTCGA+GGG - Chr1:99333840-99333859 MsG0180006046.01.T01:CDS 50.0%
!! GCATTCAGAGAGGCTAGCTT+TGG - Chr1:99339686-99339705 MsG0180006046.01.T01:intron 50.0%
!! GGACTGATTTGCTTCTGCAG+TGG - Chr1:99337359-99337378 MsG0180006046.01.T01:intron 50.0%
!! TCCTCATTGTTCTCTGGAGC+AGG + Chr1:99335009-99335028 None:intergenic 50.0%
!! TGTGATCCCTGGACTTGTTG+TGG - Chr1:99336353-99336372 MsG0180006046.01.T01:CDS 50.0%
!! TGTTGGTTTCTGAGCCTCCA+AGG + Chr1:99339640-99339659 None:intergenic 50.0%
ACCCATGGGTATCCGCATAG+TGG - Chr1:99333827-99333846 MsG0180006046.01.T01:CDS 55.0%
CAACTACACACACCTGACCC+AGG - Chr1:99334352-99334371 MsG0180006046.01.T01:CDS 55.0%
CGATTGAACGAACCTGGGTC+AGG + Chr1:99334367-99334386 None:intergenic 55.0%
GAAGAGGCCACAACAAGTCC+AGG + Chr1:99336363-99336382 None:intergenic 55.0%
GAGATGTGCATCCCGATTGC+CGG - Chr1:99334504-99334523 MsG0180006046.01.T01:CDS 55.0%
GAGGCTCCAACAGAGTCTAG+GGG - Chr1:99335231-99335250 MsG0180006046.01.T01:intron 55.0%
GCCTGCTCCAGAGAACAATG+AGG - Chr1:99335005-99335024 MsG0180006046.01.T01:CDS 55.0%
GGAGCGTGGCTTATCAACCA+TGG - Chr1:99339108-99339127 MsG0180006046.01.T01:CDS 55.0%
GGAGGCTCCAACAGAGTCTA+GGG - Chr1:99335230-99335249 MsG0180006046.01.T01:intron 55.0%
GGCAATCGGGATGCACATCT+CGG + Chr1:99334505-99334524 None:intergenic 55.0%
TGGAGGCTCCAACAGAGTCT+AGG - Chr1:99335229-99335248 MsG0180006046.01.T01:intron 55.0%
TTACTGGCGTTCCGGCAATC+GGG + Chr1:99334518-99334537 None:intergenic 55.0%
! CGGTTGAGGCTGATTCCCAT+TGG - Chr1:99339780-99339799 MsG0180006046.01.T01:intron 55.0%
! GGGGTGTTTCGAAGCAGAAG+TGG - Chr1:99335250-99335269 MsG0180006046.01.T01:intron 55.0%
! GTGGATACTCTCGAGGGTAC+GGG - Chr1:99333846-99333865 MsG0180006046.01.T01:CDS 55.0%
! TGGATACTCTCGAGGGTACG+GGG - Chr1:99333847-99333866 MsG0180006046.01.T01:CDS 55.0%
!! CATCTGGGATGGCTTGCTCA+TGG + Chr1:99334913-99334932 None:intergenic 55.0%
!! CCGCATAGTGGATACTCTCG+AGG - Chr1:99333839-99333858 MsG0180006046.01.T01:CDS 55.0%
!! TTCTCTGGAGCAGGCTGATC+AGG + Chr1:99335000-99335019 None:intergenic 55.0%
AGGATCCTGCTCCATTCGGC+TGG - Chr1:99335391-99335410 MsG0180006046.01.T01:intron 60.0%
CGAGCGAGGAACTGCATTGC+CGG - Chr1:99337338-99337357 MsG0180006046.01.T01:intron 60.0%
GATATCCGTCCCCACTCCGT+TGG + Chr1:99333895-99333914 None:intergenic 60.0%
GATCGTATCGTGGGTGACCG+AGG - Chr1:99338669-99338688 MsG0180006046.01.T01:CDS 60.0%
GCCACCAGAAAAGGGGTTGC+CGG + Chr1:99335953-99335972 None:intergenic 60.0%
GGAGATGGAGGGAACCTTGG+AGG - Chr1:99339623-99339642 MsG0180006046.01.T01:intron 60.0%
GGATCCTGCTCCATTCGGCT+GGG - Chr1:99335392-99335411 MsG0180006046.01.T01:intron 60.0%
GGGTGACCGAGGATGAACCA+GGG - Chr1:99338680-99338699 MsG0180006046.01.T01:CDS 60.0%
GGTCGAATGCAGTGCGCTAC+TGG - Chr1:99338701-99338720 MsG0180006046.01.T01:CDS 60.0%
TAGCGCACTGCATTCGACCC+TGG + Chr1:99338700-99338719 None:intergenic 60.0%
TCCCACTCTATCTCTGGCGC+CGG - Chr1:99335931-99335950 MsG0180006046.01.T01:intron 60.0%
TGGGTGACCGAGGATGAACC+AGG - Chr1:99338679-99338698 MsG0180006046.01.T01:CDS 60.0%
! ATACTCTCGAGGGTACGGGG+CGG - Chr1:99333850-99333869 MsG0180006046.01.T01:CDS 60.0%
CCATCCCAGCCGAATGGAGC+AGG + Chr1:99335399-99335418 None:intergenic 65.0%
CCTGCTCCATTCGGCTGGGA+TGG - Chr1:99335396-99335415 MsG0180006046.01.T01:intron 65.0%
GCCGGCGCCAGAGATAGAGT+GGG + Chr1:99335935-99335954 None:intergenic 65.0%
TGCCGGCGCCAGAGATAGAG+TGG + Chr1:99335936-99335955 None:intergenic 65.0%
! GCCGGCAACCCCTTTTCTGG+TGG - Chr1:99335949-99335968 MsG0180006046.01.T01:intron 65.0%
! TACTCTCGAGGGTACGGGGC+GGG - Chr1:99333851-99333870 MsG0180006046.01.T01:CDS 65.0%
!!! GGCGCCGGCAACCCCTTTTC+TGG - Chr1:99335946-99335965 MsG0180006046.01.T01:intron 70.0%
! TCGAGGGTACGGGGCGGGCA+CGG - Chr1:99333856-99333875 MsG0180006046.01.T01:CDS 75.0%
!! CGAGGGTACGGGGCGGGCAC+GGG - Chr1:99333857-99333876 MsG0180006046.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99333813 99339859 99333813 ID=MsG0180006046.01;Name=MsG0180006046.01
Chr1 mRNA 99333813 99339859 99333813 ID=MsG0180006046.01.T01;Parent=MsG0180006046.01;Name=MsG0180006046.01.T01;_AED=0.29;_eAED=0.31;_QI=0|0.37|0.33|0.88|0.87|0.77|9|0|768
Chr1 exon 99339811 99339859 99339811 ID=MsG0180006046.01.T01:exon:1926;Parent=MsG0180006046.01.T01
Chr1 exon 99339330 99339411 99339330 ID=MsG0180006046.01.T01:exon:1925;Parent=MsG0180006046.01.T01
Chr1 exon 99339070 99339191 99339070 ID=MsG0180006046.01.T01:exon:1924;Parent=MsG0180006046.01.T01
Chr1 exon 99338583 99338722 99338583 ID=MsG0180006046.01.T01:exon:1923;Parent=MsG0180006046.01.T01
Chr1 exon 99338255 99338495 99338255 ID=MsG0180006046.01.T01:exon:1922;Parent=MsG0180006046.01.T01
Chr1 exon 99336619 99336755 99336619 ID=MsG0180006046.01.T01:exon:1921;Parent=MsG0180006046.01.T01
Chr1 exon 99336211 99336533 99336211 ID=MsG0180006046.01.T01:exon:1920;Parent=MsG0180006046.01.T01
Chr1 exon 99334717 99335120 99334717 ID=MsG0180006046.01.T01:exon:1919;Parent=MsG0180006046.01.T01
Chr1 exon 99333813 99334621 99333813 ID=MsG0180006046.01.T01:exon:1918;Parent=MsG0180006046.01.T01
Chr1 CDS 99339811 99339859 99339811 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99339330 99339411 99339330 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99339070 99339191 99339070 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99338583 99338722 99338583 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99338255 99338495 99338255 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99336619 99336755 99336619 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99336211 99336533 99336211 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99334717 99335120 99334717 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Chr1 CDS 99333813 99334621 99333813 ID=MsG0180006046.01.T01:cds;Parent=MsG0180006046.01.T01
Gene Sequence

>MsG0180006046.01.T01

ATGGATACTTCAATACCCATGGGTATCCGCATAGTGGATACTCTCGAGGAGAGCGACATAGAAATCGAATTTGAAGACGCTGAGGCTGAGTATACGCAAAGCCGAATCGAATTCCGAATTCTGAGAAATCGATTTCTTAACATGTCTGACGACCGAGATGTGCATCCCGATTGCCGGAACGCCAGTAATCCTTTTCACGAATGTACTGATTACTGCTTTAGAGTCATCGCTCAAGCCAAACTCACTCAATCTGGGATGCATGATGATGGACCAAAGCCTGATGAAAATTCTGATAGTGAACCTGATCAGCCTGCTCCAGAGAACAATGAGGATGGCTCTTTCCCCAAACTCTCTGCCAGACAGAAAAAGTGGATGGAGTTGAGAGCTAAAATGCAAGAAGCAAAAAAACGTAATCAAATTGAAATGGCTAATGAAAAGAAGAGGATGGAGGCTCCAACAGAGTCTAGGGGTGTTTCGAAGCAGAAGTGGCTTGACGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGACTGGATATGACAAAGGCATATATGCTTGACACACAAGAGGCTGCAGAAGAGAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTCGGCTGGGATGTTTTTAATCAAAGGACATTATACAATGCATACAAAAAGCGAACCAAGAACATTGAGGTCGATGTAGAAGAATACAATAGAATGAAAGAAGCTGATCCAGAATTCTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAACCTCAGAGGATAAGATTGACAGGATGGTACAAGAACTTAAGGATAGGGACGAGAAACGTAGGGCATTTAGCAGGAGAAGAACATTTCGTGAAGAGAAAGATGTTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAACGGGCCTTTGGTAAATACACATTGGAGATTAAAATAATCTCGAGCGAGGAACTGCATTGCCGGACTGATTTGCTTCTGCAGTGGTGCGTGTTGTATTCTCATTGTTATTCTAATGCTGGGAAGTTTAAATGGTGGATTGCGTTCTCTGGAGTTTTTGATCAGATGAATGTTCAGAAGGGCGTTAATATGTCACTTGATAGTGATGTTTTTGCTGTTCCTTCTGGTTATAATGCTCCCCAACAGGTTCATATTACACAAGGTGATCTTGTTGGGAAAGCAGTGATCGTATCGTGGGTGACCGAGGATGAACCAGGGTCGAATGCAGTGCGCTACTGGAGTACTGACAACACCAAACAAAAAAAGCTAGCTAAAGGGAAAATTGTTACTTATAGATTCTTCAATTACTCATCTGGTTTTATTCATCACACTACTATAAGGAATTTGGAGTACAACACTAAATACTATTATGAGGTTGGACTTGGGAACACAACAAGACAGTTTTGGTTTATAACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGGAGATCTTGATAACTTCCCAAATCATGACAATGTTAGGTGGGATACTTGGGGAAGGTTTGTAGAAAGGAGCGTGGCTTATCAACCATGGATATGGACTGTAGGAAACCATGAAATTGATTTCGCCCCAGAAATTGGCGAAACCAAACCATTCAAACCTTATTCGCACCGATACCATACTCCTTATAAAGCATCACAAAGTACTTCACCCTTTTGGTATTCTATCAAAAGAGCTTCAGCTCACATCATTGTCTTGGCCTCGTATTCAGCATATGGAAAATATACACCACAGTACCAATGGCTTGAACAGGAGCTACCTAAAGTTAACAGGACAGAAACTCCTTGGTTGATTGTTCTAATGCATTCACCATGGTATAATAGCAACAATCAACATTATATGGAAGGGGAGACAATGAGAGTAATGTATGAGCCATGGTTTGTTAAGTACAAGGTTGATGTTGTGTATGCTGGACATGTGCATGCCTATGAAAGAACCGAACGTGTGTCGAATATTGCATATAATGTTGTGAATGGTATTTGCACTCCTATAAAAGATCAATCAGCTCCTGTATACATAACCATTGGAGATGGAGGGAACCTTGGAGGCTCAGAAACCAACATGACAGAACCACAGCCAGAGTACTCAGCATTCAGAGAGGCTAGCTTTGGACATGCCATTTTTGACATAATGAACAGAACACATGCTCACTATAGCTGGCATAGAAATCAAGATGGTTATTCGGTTGAGGCTGATTCCCATTGGTTTTTCAACAGATTTTGGCACCCAGTTGATGATTCCACTGCTCATGTTTTACATTGA

Protein sequence

>MsG0180006046.01.T01

MDTSIPMGIRIVDTLEESDIEIEFEDAEAEYTQSRIEFRILRNRFLNMSDDRDVHPDCRNASNPFHECTDYCFRVIAQAKLTQSGMHDDGPKPDENSDSEPDQPAPENNEDGSFPKLSARQKKWMELRAKMQEAKKRNQIEMANEKKRMEAPTESRGVSKQKWLDDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKWEKDPAPFGWDVFNQRTLYNAYKKRTKNIEVDVEEYNRMKEADPEFYRDASSLQYGKAPKTSEDKIDRMVQELKDRDEKRRAFSRRRTFREEKDVDSINDRNEHFNKKIERAFGKYTLEIKIISSEELHCRTDLLLQWCVLYSHCYSNAGKFKWWIAFSGVFDQMNVQKGVNMSLDSDVFAVPSGYNAPQQVHITQGDLVGKAVIVSWVTEDEPGSNAVRYWSTDNTKQKKLAKGKIVTYRFFNYSSGFIHHTTIRNLEYNTKYYYEVGLGNTTRQFWFITPPEIGPDVPYTFGLIGDLDNFPNHDNVRWDTWGRFVERSVAYQPWIWTVGNHEIDFAPEIGETKPFKPYSHRYHTPYKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYQWLEQELPKVNRTETPWLIVLMHSPWYNSNNQHYMEGETMRVMYEPWFVKYKVDVVYAGHVHAYERTERVSNIAYNVVNGICTPIKDQSAPVYITIGDGGNLGGSETNMTEPQPEYSAFREASFGHAIFDIMNRTHAHYSWHRNQDGYSVEADSHWFFNRFWHPVDDSTAHVLH*