Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019810.01.T01 | XP_003624883.1 | 93.805 | 113 | 7 | 0 | 11 | 123 | 91 | 203 | 1.39E-68 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019810.01.T01 | Q9M612 | 75.439 | 114 | 27 | 1 | 11 | 123 | 92 | 205 | 2.29E-53 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019810.01.T01 | G7L4T7 | 93.805 | 113 | 7 | 0 | 11 | 123 | 91 | 203 | 6.62e-69 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047940.01 | MsG0480019810.01 | 0.809931 | 1.482621e-50 | 8.819188e-48 |
| MsG0080048113.01 | MsG0480019810.01 | 0.880786 | 4.120789e-70 | 2.354832e-66 |
| MsG0080048600.01 | MsG0480019810.01 | 0.809554 | 1.786891e-50 | 1.052384e-47 |
| MsG0080048856.01 | MsG0480019810.01 | 0.818586 | 1.814098e-52 | 1.363450e-49 |
| MsG0180000139.01 | MsG0480019810.01 | 0.802974 | 4.348737e-49 | 2.159389e-46 |
| MsG0180000209.01 | MsG0480019810.01 | 0.817308 | 3.527031e-52 | 2.559369e-49 |
| MsG0180000470.01 | MsG0480019810.01 | 0.802225 | 6.207642e-49 | 3.024243e-46 |
| MsG0180000503.01 | MsG0480019810.01 | 0.805277 | 1.442691e-49 | 7.600833e-47 |
| MsG0180000703.01 | MsG0480019810.01 | 0.802078 | 6.652790e-49 | 3.229110e-46 |
| MsG0180003669.01 | MsG0480019810.01 | 0.845262 | 4.533145e-59 | 7.512101e-56 |
| MsG0180003920.01 | MsG0480019810.01 | 0.829700 | 4.445777e-55 | 4.585519e-52 |
| MsG0180004152.01 | MsG0480019810.01 | 0.827327 | 1.663388e-54 | 1.600806e-51 |
| MsG0180004389.01 | MsG0480019810.01 | 0.826440 | 2.710026e-54 | 2.541685e-51 |
| MsG0180004463.01 | MsG0480019810.01 | 0.801247 | 9.850340e-49 | 4.681655e-46 |
| MsG0180004465.01 | MsG0480019810.01 | 0.819824 | 9.479451e-53 | 7.373961e-50 |
| MsG0180004481.01 | MsG0480019810.01 | 0.802364 | 5.810783e-49 | 2.841194e-46 |
| MsG0180004711.01 | MsG0480019810.01 | 0.825658 | 4.156873e-54 | 3.812825e-51 |
| MsG0180005050.01 | MsG0480019810.01 | 0.803844 | 2.871551e-49 | 1.458217e-46 |
| MsG0180005250.01 | MsG0480019810.01 | 0.804014 | 2.647508e-49 | 1.350298e-46 |
| MsG0180005842.01 | MsG0480019810.01 | 0.802862 | 4.586522e-49 | 2.271124e-46 |
| MsG0180006207.01 | MsG0480019810.01 | 0.815835 | 7.540514e-52 | 5.255476e-49 |
| MsG0280006299.01 | MsG0480019810.01 | 0.807792 | 4.251538e-50 | 2.389982e-47 |
| MsG0280010698.01 | MsG0480019810.01 | 0.811745 | 6.003772e-51 | 3.746578e-48 |
| MsG0280010778.01 | MsG0480019810.01 | 0.807278 | 5.465469e-50 | 3.031629e-47 |
| MsG0280010980.01 | MsG0480019810.01 | 0.816686 | 4.867149e-52 | 3.472108e-49 |
| MsG0280011003.01 | MsG0480019810.01 | 0.821107 | 4.813262e-53 | 3.880181e-50 |
| MsG0280011013.01 | MsG0480019810.01 | 0.812920 | 3.325104e-51 | 2.141099e-48 |
| MsG0280011014.01 | MsG0480019810.01 | 0.811143 | 8.112281e-51 | 4.982610e-48 |
| MsG0280011282.01 | MsG0480019810.01 | 0.805344 | 1.396544e-49 | 7.370637e-47 |
| MsG0280011472.01 | MsG0480019810.01 | 0.811771 | 5.926304e-51 | 3.700783e-48 |
| MsG0380011617.01 | MsG0480019810.01 | 0.814595 | 1.421841e-51 | 9.581149e-49 |
| MsG0380012460.01 | MsG0480019810.01 | 0.813531 | 2.441973e-51 | 1.598794e-48 |
| MsG0380012471.01 | MsG0480019810.01 | 0.815385 | 9.496595e-52 | 6.538047e-49 |
| MsG0380013178.01 | MsG0480019810.01 | 0.811509 | 6.756109e-51 | 4.190106e-48 |
| MsG0380013363.01 | MsG0480019810.01 | 0.817911 | 2.579411e-52 | 1.902933e-49 |
| MsG0380013834.01 | MsG0480019810.01 | 0.815881 | 7.366279e-52 | 5.140427e-49 |
| MsG0380014701.01 | MsG0480019810.01 | 0.802284 | 6.034444e-49 | 2.944549e-46 |
| MsG0380014703.01 | MsG0480019810.01 | 0.822067 | 2.888507e-53 | 2.392021e-50 |
| MsG0480019297.01 | MsG0480019810.01 | 0.813390 | 2.623157e-51 | 1.710855e-48 |
| MsG0480019435.01 | MsG0480019810.01 | 0.803843 | 2.872720e-49 | 1.458776e-46 |
| MsG0480019810.01 | MsG0480020447.01 | 0.819179 | 1.330218e-52 | 1.016293e-49 |
| MsG0480019810.01 | MsG0480021215.01 | 0.818853 | 1.578031e-52 | 1.194899e-49 |
| MsG0480019810.01 | MsG0480021452.01 | 0.837837 | 4.106491e-57 | 5.400621e-54 |
| MsG0480019810.01 | MsG0480021465.01 | 0.815580 | 8.596416e-52 | 5.949887e-49 |
| MsG0480019810.01 | MsG0480022164.01 | 0.839186 | 1.842256e-57 | 2.524412e-54 |
| MsG0480019810.01 | MsG0480022213.01 | -0.800002 | 1.767773e-48 | 8.140610e-46 |
| MsG0480019810.01 | MsG0480022222.01 | 0.801907 | 7.213248e-49 | 3.486013e-46 |
| MsG0480019810.01 | MsG0480022259.01 | 0.811633 | 6.349851e-51 | 3.950649e-48 |
| MsG0480019810.01 | MsG0480022262.01 | 0.812928 | 3.312400e-51 | 2.133339e-48 |
| MsG0480019810.01 | MsG0480022795.01 | 0.817847 | 2.666847e-52 | 1.964046e-49 |
| MsG0480019810.01 | MsG0480023600.01 | 0.818576 | 1.824115e-52 | 1.370604e-49 |
| MsG0480019810.01 | MsG0480023873.01 | 0.802863 | 4.583765e-49 | 2.269841e-46 |
| MsG0480019810.01 | MsG0580024038.01 | 0.800698 | 1.275573e-48 | 5.978512e-46 |
| MsG0480019810.01 | MsG0580024197.01 | 0.820601 | 6.291800e-53 | 5.000507e-50 |
| MsG0480019810.01 | MsG0580024390.01 | 0.808547 | 2.934980e-50 | 1.682963e-47 |
| MsG0480019810.01 | MsG0580024781.01 | 0.816891 | 4.377086e-52 | 3.140188e-49 |
| MsG0480019810.01 | MsG0580025022.01 | 0.821365 | 4.196844e-53 | 3.407422e-50 |
| MsG0480019810.01 | MsG0580025638.01 | 0.810031 | 1.411113e-50 | 8.416114e-48 |
| MsG0480019810.01 | MsG0580027031.01 | 0.824753 | 6.804492e-54 | 6.082787e-51 |
| MsG0480019810.01 | MsG0580027650.01 | 0.822492 | 2.301090e-53 | 1.929012e-50 |
| MsG0480019810.01 | MsG0580027745.01 | 0.836872 | 7.253749e-57 | 9.261680e-54 |
| MsG0480019810.01 | MsG0580029008.01 | 0.809837 | 1.552975e-50 | 9.215238e-48 |
| MsG0480019810.01 | MsG0680031214.01 | 0.803879 | 2.824028e-49 | 1.435383e-46 |
| MsG0480019810.01 | MsG0680031506.01 | 0.812695 | 3.724672e-51 | 2.384352e-48 |
| MsG0480019810.01 | MsG0680031652.01 | 0.803750 | 3.003200e-49 | 1.521327e-46 |
| MsG0480019810.01 | MsG0680032157.01 | 0.818261 | 2.149717e-52 | 1.601220e-49 |
| MsG0480019810.01 | MsG0680032933.01 | 0.806033 | 1.000927e-49 | 5.377048e-47 |
| MsG0480019810.01 | MsG0680035475.01 | 0.838267 | 3.183707e-57 | 4.241595e-54 |
| MsG0480019810.01 | MsG0680035573.01 | 0.806424 | 8.282734e-50 | 4.493958e-47 |
| MsG0480019810.01 | MsG0680035692.01 | 0.804937 | 1.699826e-49 | 8.878523e-47 |
| MsG0480019810.01 | MsG0780036146.01 | 0.802961 | 4.376299e-49 | 2.172443e-46 |
| MsG0480019810.01 | MsG0780036477.01 | 0.804086 | 2.556977e-49 | 1.306530e-46 |
| MsG0480019810.01 | MsG0780036815.01 | 0.802540 | 5.345613e-49 | 2.625343e-46 |
| MsG0480019810.01 | MsG0780037919.01 | 0.805693 | 1.179993e-49 | 6.284216e-47 |
| MsG0480019810.01 | MsG0780038401.01 | 0.840710 | 7.380363e-58 | 1.060173e-54 |
| MsG0480019810.01 | MsG0780039243.01 | 0.810973 | 8.830685e-51 | 5.400166e-48 |
| MsG0480019810.01 | MsG0780039866.01 | 0.823408 | 1.407467e-53 | 1.210737e-50 |
| MsG0480019810.01 | MsG0780040057.01 | 0.828004 | 1.144099e-54 | 1.122951e-51 |
| MsG0480019810.01 | MsG0780040262.01 | 0.801978 | 6.977570e-49 | 3.377921e-46 |
| MsG0480019810.01 | MsG0780040841.01 | 0.821554 | 3.795846e-53 | 3.098237e-50 |
| MsG0480019810.01 | MsG0780041462.01 | 0.807307 | 5.389450e-50 | 2.991695e-47 |
| MsG0480019810.01 | MsG0780041559.01 | 0.801645 | 8.165403e-49 | 3.919832e-46 |
| MsG0480019810.01 | MsG0780041667.01 | 0.805474 | 1.312105e-49 | 6.948054e-47 |
| MsG0480019810.01 | MsG0880042158.01 | 0.820492 | 6.667608e-53 | 5.283534e-50 |
| MsG0480019810.01 | MsG0880042232.01 | 0.804208 | 2.412102e-49 | 1.236315e-46 |
| MsG0480019810.01 | MsG0880042294.01 | 0.803878 | 2.824843e-49 | 1.435768e-46 |
| MsG0480019810.01 | MsG0880042404.01 | 0.801974 | 6.988556e-49 | 3.382941e-46 |
| MsG0480019810.01 | MsG0880042518.01 | 0.810151 | 1.329114e-50 | 7.951559e-48 |
| MsG0480019810.01 | MsG0880043479.01 | 0.803381 | 3.582687e-49 | 1.797670e-46 |
| MsG0480019810.01 | MsG0880044574.01 | 0.823553 | 1.302180e-53 | 1.124833e-50 |
| MsG0480019810.01 | MsG0880045372.01 | 0.829817 | 4.162176e-55 | 4.308122e-52 |
| MsG0480019810.01 | MsG0880045653.01 | 0.810316 | 1.224564e-50 | 7.357690e-48 |
| MsG0480019810.01 | MsG0880045736.01 | 0.828909 | 6.917045e-55 | 6.969468e-52 |
| MsG0480019810.01 | MsG0880045937.01 | 0.802740 | 4.860454e-49 | 2.399337e-46 |
| MsG0480019810.01 | MsG0880046020.01 | 0.810496 | 1.119668e-50 | 6.759584e-48 |
| MsG0380015168.01 | MsG0480019810.01 | 0.811012 | 8.659510e-51 | 5.301048e-48 |
| MsG0380015440.01 | MsG0480019810.01 | 0.812528 | 4.052565e-51 | 2.582903e-48 |
| MsG0380015555.01 | MsG0480019810.01 | 0.800221 | 1.595221e-48 | 7.387031e-46 |
| MsG0380016910.01 | MsG0480019810.01 | 0.810677 | 1.023659e-50 | 6.210049e-48 |
| MsG0380016970.01 | MsG0480019810.01 | 0.800244 | 1.578302e-48 | 7.312906e-46 |
| MsG0480018163.01 | MsG0480019810.01 | 0.829142 | 6.072927e-55 | 6.161581e-52 |
| MsG0280007529.01 | MsG0480019810.01 | 0.805249 | 1.461996e-49 | 7.697045e-47 |
| MsG0280007564.01 | MsG0480019810.01 | 0.801856 | 7.392140e-49 | 3.567829e-46 |
| MsG0280007955.01 | MsG0480019810.01 | 0.806023 | 1.005982e-49 | 5.402842e-47 |
| MsG0280008615.01 | MsG0480019810.01 | 0.808819 | 2.567712e-50 | 1.482828e-47 |
| MsG0280009024.01 | MsG0480019810.01 | 0.808450 | 3.078876e-50 | 1.761067e-47 |
| MsG0280010443.01 | MsG0480019810.01 | 0.815013 | 1.149138e-51 | 7.831315e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019810.01.T01 | MTR_7g088680 | 93.805 | 113 | 7 | 0 | 11 | 123 | 91 | 203 | 1.68e-72 | 215 |
| MsG0480019810.01.T01 | MTR_3g092970 | 65.254 | 118 | 35 | 2 | 12 | 123 | 110 | 227 | 1.49e-42 | 139 |
| MsG0480019810.01.T01 | MTR_3g092980 | 54.400 | 125 | 36 | 2 | 12 | 123 | 102 | 218 | 6.85e-36 | 122 |
| MsG0480019810.01.T01 | MTR_3g092980 | 54.400 | 125 | 36 | 2 | 12 | 123 | 104 | 220 | 7.70e-36 | 122 |
| MsG0480019810.01.T01 | MTR_3g093750 | 52.713 | 129 | 41 | 5 | 5 | 123 | 409 | 527 | 2.15e-26 | 102 |
| MsG0480019810.01.T01 | MTR_3g093720 | 76.744 | 43 | 10 | 0 | 81 | 123 | 215 | 257 | 6.03e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019810.01.T01 | AT3G12390 | 71.304 | 115 | 31 | 1 | 11 | 123 | 89 | 203 | 1.47e-42 | 139 |
| MsG0480019810.01.T01 | AT5G13850 | 68.067 | 119 | 31 | 1 | 11 | 122 | 85 | 203 | 1.07e-40 | 134 |
| MsG0480019810.01.T01 | AT3G49470 | 60.345 | 116 | 40 | 1 | 14 | 123 | 102 | 217 | 1.17e-38 | 129 |
| MsG0480019810.01.T01 | AT1G33040 | 58.475 | 118 | 43 | 2 | 11 | 122 | 91 | 208 | 2.42e-37 | 126 |
| MsG0480019810.01.T01 | AT4G10480 | 60.833 | 120 | 37 | 2 | 11 | 122 | 93 | 210 | 3.63e-36 | 123 |
| MsG0480019810.01.T01 | AT4G10480 | 60.833 | 120 | 37 | 2 | 11 | 122 | 94 | 211 | 4.25e-36 | 123 |
| MsG0480019810.01.T01 | AT3G49470 | 58.879 | 107 | 38 | 1 | 14 | 114 | 102 | 208 | 3.00e-33 | 116 |
Find 30 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGACACCTACATTATATT+TGG | 0.098409 | 4:-27718085 | MsG0480019810.01.T01:CDS |
| GGAGCAATACCAGAGGATTC+TGG | 0.324111 | 4:+27717971 | None:intergenic |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | 4:+27717950 | None:intergenic |
| CTGACACCTACATTATATTT+GGG | 0.330139 | 4:-27718084 | MsG0480019810.01.T01:CDS |
| GCACCCGCATTGGTCAAATT+AGG | 0.333932 | 4:+27717998 | None:intergenic |
| GCTTTAACAGCTCTTGATCT+TGG | 0.356165 | 4:+27717875 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | 4:-27717834 | MsG0480019810.01.T01:CDS |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | 4:+27718109 | None:intergenic |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | 4:+27717820 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | 4:+27717913 | None:intergenic |
| GCTTGAGCTTCAAGCTTCAA+TGG | 0.440160 | 4:-27719021 | MsG0480019810.01.T01:CDS |
| TTCTGGCTTCGCACCCGCAT+TGG | 0.469966 | 4:+27717988 | None:intergenic |
| TCAAGCTTCAATGGCGGAAA+CGG | 0.475278 | 4:-27719012 | MsG0480019810.01.T01:intron |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.493163 | 4:-27718023 | MsG0480019810.01.T01:CDS |
| AAAGCTCTCAAAGCTGTCAA+TGG | 0.508744 | 4:-27717857 | MsG0480019810.01.T01:CDS |
| ATAATGTAGGTGTCAGAAGT+TGG | 0.511639 | 4:+27718091 | None:intergenic |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | 4:-27717915 | MsG0480019810.01.T01:CDS |
| GATCCTAATTTGACCAATGC+GGG | 0.519700 | 4:-27718001 | MsG0480019810.01.T01:CDS |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | 4:+27717914 | None:intergenic |
| GGTGCGAAGCCAGAATCCTC+TGG | 0.535151 | 4:-27717980 | MsG0480019810.01.T01:CDS |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | 4:-27717944 | MsG0480019810.01.T01:CDS |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | 4:-27717902 | MsG0480019810.01.T01:CDS |
| AGCTTTCCCAAATATAATGT+AGG | 0.558527 | 4:+27718078 | None:intergenic |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | 4:-27718041 | MsG0480019810.01.T01:CDS |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | 4:-27717930 | MsG0480019810.01.T01:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | 4:-27717960 | MsG0480019810.01.T01:CDS |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | 4:-27717918 | MsG0480019810.01.T01:CDS |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | 4:+27717964 | None:intergenic |
| GGATCCTAATTTGACCAATG+CGG | 0.677685 | 4:-27718002 | MsG0480019810.01.T01:CDS |
| TGAGCTTCAAGCTTCAATGG+CGG | 0.684568 | 4:-27719018 | MsG0480019810.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAATAGTGAAAAT+AGG | - | Chr4:27718399-27718418 | MsG0480019810.01.T01:intron | 10.0% |
| !!! | ATATTTTTTTCTTCTTCTTT+TGG | - | Chr4:27718654-27718673 | MsG0480019810.01.T01:intron | 15.0% |
| !!! | TTTGCTTTTATTACATAATA+AGG | + | Chr4:27718097-27718116 | None:intergenic | 15.0% |
| !! | TTGGTTAGAATAACAATAAT+TGG | + | Chr4:27718245-27718264 | None:intergenic | 20.0% |
| !!! | AGTTCTTTTTGAAATTTCAA+TGG | - | Chr4:27718274-27718293 | MsG0480019810.01.T01:intron | 20.0% |
| ! | AATTGTCTTTCAATGTTTCT+TGG | + | Chr4:27718155-27718174 | None:intergenic | 25.0% |
| ! | TATTCTTGTATAGACTAATC+TGG | + | Chr4:27718529-27718548 | None:intergenic | 25.0% |
| ! | TGTTTCTTGGAAAGAAATAA+TGG | + | Chr4:27718142-27718161 | None:intergenic | 25.0% |
| ! | TTGATTACAGTCCTATATAT+AGG | - | Chr4:27717971-27717990 | MsG0480019810.01.T01:CDS | 25.0% |
| !!! | AAAAAGAACTTGTTGCTATT+TGG | + | Chr4:27718264-27718283 | None:intergenic | 25.0% |
| !!! | GTTGTTTTAGTTTCATGATA+TGG | + | Chr4:27717917-27717936 | None:intergenic | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | + | Chr4:27719032-27719051 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTGCATGAACTG+AGG | - | Chr4:27718614-27718633 | MsG0480019810.01.T01:intron | 25.0% |
| AGAGAATGACTACTATTAGA+GGG | + | Chr4:27718450-27718469 | None:intergenic | 30.0% | |
| AGCTTTCCCAAATATAATGT+AGG | + | Chr4:27718774-27718793 | None:intergenic | 30.0% | |
| CAAAATACATGTACATTGTC+AGG | - | Chr4:27718553-27718572 | MsG0480019810.01.T01:intron | 30.0% | |
| CTGACACCTACATTATATTT+GGG | - | Chr4:27718765-27718784 | MsG0480019810.01.T01:intron | 30.0% | |
| GAAGTCATTATCAAAAGATG+TGG | - | Chr4:27718345-27718364 | MsG0480019810.01.T01:intron | 30.0% | |
| GCTCTCATTTACCTATATAT+AGG | + | Chr4:27717985-27718004 | None:intergenic | 30.0% | |
| TAGAGAATGACTACTATTAG+AGG | + | Chr4:27718451-27718470 | None:intergenic | 30.0% | |
| TCTGACACCTACATTATATT+TGG | - | Chr4:27718764-27718783 | MsG0480019810.01.T01:intron | 30.0% | |
| ! | CTGACAATGTACATGTATTT+TGG | + | Chr4:27718555-27718574 | None:intergenic | 30.0% |
| !! | AGAGAGTTGATAACTAATTC+TGG | - | Chr4:27718201-27718220 | MsG0480019810.01.T01:intron | 30.0% |
| AACGGTTAGAAAACAGAAAC+TGG | - | Chr4:27717855-27717874 | MsG0480019810.01.T01:CDS | 35.0% | |
| AAGTTTAGACTACATCCTTC+TGG | + | Chr4:27718478-27718497 | None:intergenic | 35.0% | |
| ATAATGTAGGTGTCAGAAGT+TGG | + | Chr4:27718761-27718780 | None:intergenic | 35.0% | |
| GTCTAAACTTGAACATACTC+TGG | - | Chr4:27718488-27718507 | MsG0480019810.01.T01:intron | 35.0% | |
| ! | CAAGTTACACAGTTAGCTTA+GGG | + | Chr4:27718052-27718071 | None:intergenic | 35.0% |
| ! | TAGGAGTACACAAGTATTAG+AGG | - | Chr4:27718418-27718437 | MsG0480019810.01.T01:intron | 35.0% |
| AAAGCTCTCAAAGCTGTCAA+TGG | - | Chr4:27718992-27719011 | MsG0480019810.01.T01:intron | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | + | Chr4:27718938-27718957 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | - | Chr4:27719015-27719034 | MsG0480019810.01.T01:CDS | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | - | Chr4:27718931-27718950 | MsG0480019810.01.T01:intron | 40.0% | |
| ATGAACTGAGGCTACAATGA+TGG | - | Chr4:27718626-27718645 | MsG0480019810.01.T01:intron | 40.0% | |
| GATCCTAATTTGACCAATGC+GGG | - | Chr4:27718848-27718867 | MsG0480019810.01.T01:intron | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | + | Chr4:27718977-27718996 | None:intergenic | 40.0% | |
| GGATCCTAATTTGACCAATG+CGG | - | Chr4:27718847-27718866 | MsG0480019810.01.T01:intron | 40.0% | |
| GGATCGTAACAAACTCTCTA+AGG | - | Chr4:27717876-27717895 | MsG0480019810.01.T01:CDS | 40.0% | |
| GTCATTCTCTATTGACCAGA+AGG | - | Chr4:27718460-27718479 | MsG0480019810.01.T01:intron | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | + | Chr4:27718743-27718762 | None:intergenic | 40.0% | |
| TTGAAAGTCATGCAGAACAG+TGG | + | Chr4:27718581-27718600 | None:intergenic | 40.0% | |
| ! | GCAAGTTACACAGTTAGCTT+AGG | + | Chr4:27718053-27718072 | None:intergenic | 40.0% |
| CACCACCAACTCAATATCCT+TGG | + | Chr4:27718939-27718958 | None:intergenic | 45.0% | |
| GCTTGAGCTTCAAGCTTCAA+TGG | - | Chr4:27717828-27717847 | MsG0480019810.01.T01:CDS | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | + | Chr4:27718902-27718921 | None:intergenic | 45.0% | |
| TGAGCTTCAAGCTTCAATGG+CGG | - | Chr4:27717831-27717850 | MsG0480019810.01.T01:CDS | 45.0% | |
| TGGTATTGCTCCAGAAGATG+AGG | - | Chr4:27718889-27718908 | MsG0480019810.01.T01:intron | 45.0% | |
| ! | TCAAGCTTCAATGGCGGAAA+CGG | - | Chr4:27717837-27717856 | MsG0480019810.01.T01:CDS | 45.0% |
| !! | ATCTTCTGGAGCAATACCAG+AGG | + | Chr4:27718888-27718907 | None:intergenic | 45.0% |
| !! | TCCCAAGGATATTGAGTTGG+TGG | - | Chr4:27718934-27718953 | MsG0480019810.01.T01:intron | 45.0% |
| GAGCTCACAGCTACAAACTC+AGG | - | Chr4:27718808-27718827 | MsG0480019810.01.T01:intron | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | - | Chr4:27718905-27718924 | MsG0480019810.01.T01:intron | 50.0% | |
| GGAGCAATACCAGAGGATTC+TGG | + | Chr4:27718881-27718900 | None:intergenic | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | + | Chr4:27718854-27718873 | None:intergenic | 50.0% |
| CGAGACTGGTGTAGATCCCA+AGG | - | Chr4:27718919-27718938 | MsG0480019810.01.T01:intron | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | - | Chr4:27718826-27718845 | MsG0480019810.01.T01:intron | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | - | Chr4:27718947-27718966 | MsG0480019810.01.T01:intron | 55.0% |
| GGTGCGAAGCCAGAATCCTC+TGG | - | Chr4:27718869-27718888 | MsG0480019810.01.T01:intron | 60.0% | |
| !! | TTCTGGCTTCGCACCCGCAT+TGG | + | Chr4:27718864-27718883 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 27717820 | 27719051 | 27717820 | ID=MsG0480019810.01;Name=MsG0480019810.01 |
| Chr4 | mRNA | 27717820 | 27719051 | 27717820 | ID=MsG0480019810.01.T01;Parent=MsG0480019810.01;Name=MsG0480019810.01.T01;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.5|1|1|2|0|123 |
| Chr4 | exon | 27719013 | 27719051 | 27719013 | ID=MsG0480019810.01.T01:exon:5848;Parent=MsG0480019810.01.T01 |
| Chr4 | exon | 27717820 | 27718152 | 27717820 | ID=MsG0480019810.01.T01:exon:5847;Parent=MsG0480019810.01.T01 |
| Chr4 | CDS | 27719013 | 27719051 | 27719013 | ID=MsG0480019810.01.T01:cds;Parent=MsG0480019810.01.T01 |
| Chr4 | CDS | 27717820 | 27718152 | 27717820 | ID=MsG0480019810.01.T01:cds;Parent=MsG0480019810.01.T01 |
| Gene Sequence |
| Protein sequence |
