Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024166.01.T01 | AES99811.2 | 79.775 | 178 | 17 | 2 | 1 | 160 | 1 | 177 | 3.45E-90 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024166.01.T01 | Q67ZU1 | 39.752 | 161 | 89 | 2 | 38 | 191 | 64 | 223 | 2.07E-34 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024166.01.T01 | G7KH68 | 79.775 | 178 | 17 | 2 | 1 | 160 | 1 | 177 | 1.65e-90 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0580024166.01 | 0.805050 | 1.609189e-49 | 8.429158e-47 |
| MsG0080048618.01 | MsG0580024166.01 | 0.800904 | 1.157807e-48 | 5.455531e-46 |
| MsG0080048764.01 | MsG0580024166.01 | 0.812042 | 5.173106e-51 | 3.253865e-48 |
| MsG0080048817.01 | MsG0580024166.01 | 0.805197 | 1.499516e-49 | 7.884258e-47 |
| MsG0080048856.01 | MsG0580024166.01 | 0.827218 | 1.766076e-54 | 1.694099e-51 |
| MsG0080049148.01 | MsG0580024166.01 | 0.815333 | 9.757689e-52 | 6.708106e-49 |
| MsG0180000139.01 | MsG0580024166.01 | 0.818780 | 1.639592e-52 | 1.238953e-49 |
| MsG0180000335.01 | MsG0580024166.01 | 0.813600 | 2.358184e-51 | 1.546816e-48 |
| MsG0180000470.01 | MsG0580024166.01 | 0.840259 | 9.683861e-58 | 1.371767e-54 |
| MsG0180000828.01 | MsG0580024166.01 | 0.805181 | 1.510817e-49 | 7.940512e-47 |
| MsG0180001063.01 | MsG0580024166.01 | 0.801301 | 9.604839e-49 | 4.571202e-46 |
| MsG0180001141.01 | MsG0580024166.01 | 0.835936 | 1.255396e-56 | 1.558206e-53 |
| MsG0180002482.01 | MsG0580024166.01 | 0.818199 | 2.219994e-52 | 1.650825e-49 |
| MsG0180003669.01 | MsG0580024166.01 | 0.820067 | 8.343615e-53 | 6.534905e-50 |
| MsG0180003854.01 | MsG0580024166.01 | 0.806578 | 7.683741e-50 | 4.185415e-47 |
| MsG0180003952.01 | MsG0580024166.01 | 0.819187 | 1.324750e-52 | 1.012320e-49 |
| MsG0180004152.01 | MsG0580024166.01 | 0.814033 | 1.892740e-51 | 1.256147e-48 |
| MsG0180004463.01 | MsG0580024166.01 | 0.824228 | 9.041129e-54 | 7.960431e-51 |
| MsG0180004765.01 | MsG0580024166.01 | 0.823862 | 1.102131e-53 | 9.604713e-51 |
| MsG0180005763.01 | MsG0580024166.01 | 0.809781 | 1.597130e-50 | 9.463349e-48 |
| MsG0180005993.01 | MsG0580024166.01 | 0.821800 | 3.329177e-53 | 2.736344e-50 |
| MsG0180006261.01 | MsG0580024166.01 | 0.809315 | 2.011053e-50 | 1.176877e-47 |
| MsG0280006324.01 | MsG0580024166.01 | 0.810793 | 9.660909e-51 | 5.878956e-48 |
| MsG0280006406.01 | MsG0580024166.01 | 0.816054 | 6.738752e-52 | 4.725379e-49 |
| MsG0280010778.01 | MsG0580024166.01 | 0.808497 | 3.007849e-50 | 1.722521e-47 |
| MsG0280011156.01 | MsG0580024166.01 | 0.804697 | 1.907460e-49 | 9.901042e-47 |
| MsG0280011387.01 | MsG0580024166.01 | 0.800160 | 1.641690e-48 | 7.590082e-46 |
| MsG0380011609.01 | MsG0580024166.01 | 0.812674 | 3.765299e-51 | 2.408953e-48 |
| MsG0380012460.01 | MsG0580024166.01 | 0.804564 | 2.032947e-49 | 1.051599e-46 |
| MsG0380012566.01 | MsG0580024166.01 | 0.802254 | 6.120188e-49 | 2.984015e-46 |
| MsG0380013178.01 | MsG0580024166.01 | 0.819284 | 1.259321e-52 | 9.648839e-50 |
| MsG0380014173.01 | MsG0580024166.01 | 0.815699 | 8.088753e-52 | 5.616837e-49 |
| MsG0380014647.01 | MsG0580024166.01 | 0.809531 | 1.807199e-50 | 1.063698e-47 |
| MsG0480019373.01 | MsG0580024166.01 | 0.802116 | 6.536573e-49 | 3.175676e-46 |
| MsG0480020136.01 | MsG0580024166.01 | 0.825637 | 4.206020e-54 | 3.855518e-51 |
| MsG0480020874.01 | MsG0580024166.01 | 0.830201 | 3.355708e-55 | 3.511587e-52 |
| MsG0480021164.01 | MsG0580024166.01 | 0.816334 | 5.835575e-52 | 4.123460e-49 |
| MsG0480021215.01 | MsG0580024166.01 | 0.829479 | 5.031800e-55 | 5.155973e-52 |
| MsG0480021274.01 | MsG0580024166.01 | 0.833664 | 4.683571e-56 | 5.430248e-53 |
| MsG0480021536.01 | MsG0580024166.01 | 0.807669 | 4.515485e-50 | 2.530119e-47 |
| MsG0480022052.01 | MsG0580024166.01 | -0.812141 | 4.922665e-51 | 3.104990e-48 |
| MsG0480022164.01 | MsG0580024166.01 | 0.823021 | 1.733159e-53 | 1.474932e-50 |
| MsG0480022222.01 | MsG0580024166.01 | 0.850856 | 1.295747e-60 | 2.573240e-57 |
| MsG0480022533.01 | MsG0580024166.01 | 0.800096 | 1.691370e-48 | 7.807414e-46 |
| MsG0480022791.01 | MsG0580024166.01 | 0.803391 | 3.564787e-49 | 1.789198e-46 |
| MsG0480022795.01 | MsG0580024166.01 | 0.831890 | 1.291756e-55 | 1.420892e-52 |
| MsG0480022985.01 | MsG0580024166.01 | 0.809989 | 1.440548e-50 | 8.582291e-48 |
| MsG0480023707.01 | MsG0580024166.01 | 0.813817 | 2.112493e-51 | 1.393797e-48 |
| MsG0480023814.01 | MsG0580024166.01 | 0.826940 | 2.058689e-54 | 1.958801e-51 |
| MsG0580024165.01 | MsG0580024166.01 | 0.827566 | 1.457423e-54 | 1.412165e-51 |
| MsG0580024166.01 | MsG0580024390.01 | 0.838350 | 3.029972e-57 | 4.047286e-54 |
| MsG0580024166.01 | MsG0580025022.01 | 0.812569 | 3.969861e-51 | 2.532808e-48 |
| MsG0580024166.01 | MsG0580025135.01 | 0.809066 | 2.273566e-50 | 1.321689e-47 |
| MsG0580024166.01 | MsG0580025448.01 | 0.817447 | 3.281501e-52 | 2.390448e-49 |
| MsG0580024166.01 | MsG0580025936.01 | 0.800817 | 1.206065e-48 | 5.669923e-46 |
| MsG0580024166.01 | MsG0580027833.01 | 0.806301 | 8.792587e-50 | 4.755702e-47 |
| MsG0580024166.01 | MsG0580029008.01 | 0.818249 | 2.163346e-52 | 1.610828e-49 |
| MsG0580024166.01 | MsG0680030882.01 | 0.807373 | 5.217682e-50 | 2.901208e-47 |
| MsG0580024166.01 | MsG0680031379.01 | 0.804329 | 2.275916e-49 | 1.170177e-46 |
| MsG0580024166.01 | MsG0680031646.01 | 0.812160 | 4.876065e-51 | 3.077195e-48 |
| MsG0580024166.01 | MsG0680035692.01 | 0.805845 | 1.096656e-49 | 5.863001e-47 |
| MsG0580024166.01 | MsG0680035704.01 | 0.840179 | 1.016092e-57 | 1.435864e-54 |
| MsG0580024166.01 | MsG0780035948.01 | 0.806573 | 7.704555e-50 | 4.196230e-47 |
| MsG0580024166.01 | MsG0780036190.01 | 0.807642 | 4.574110e-50 | 2.561216e-47 |
| MsG0580024166.01 | MsG0780036477.01 | 0.802036 | 6.788939e-49 | 3.291612e-46 |
| MsG0580024166.01 | MsG0780038401.01 | 0.803486 | 3.406730e-49 | 1.714105e-46 |
| MsG0580024166.01 | MsG0780038906.01 | 0.816035 | 6.805288e-52 | 4.769399e-49 |
| MsG0580024166.01 | MsG0780039144.01 | 0.808662 | 2.774174e-50 | 1.595422e-47 |
| MsG0580024166.01 | MsG0780039522.01 | 0.813148 | 2.964277e-51 | 1.920437e-48 |
| MsG0580024166.01 | MsG0780039867.01 | -0.800074 | 1.709267e-48 | 7.885667e-46 |
| MsG0580024166.01 | MsG0780040057.01 | 0.822491 | 2.302542e-53 | 1.930172e-50 |
| MsG0580024166.01 | MsG0780040596.01 | 0.809335 | 1.991116e-50 | 1.165851e-47 |
| MsG0580024166.01 | MsG0780040704.01 | 0.810847 | 9.402754e-51 | 5.730257e-48 |
| MsG0580024166.01 | MsG0780041402.01 | 0.818220 | 2.195592e-52 | 1.633577e-49 |
| MsG0580024166.01 | MsG0780041456.01 | 0.805023 | 1.630894e-49 | 8.536553e-47 |
| MsG0580024166.01 | MsG0880042294.01 | 0.837837 | 4.105979e-57 | 5.400010e-54 |
| MsG0580024166.01 | MsG0880042314.01 | 0.801389 | 9.215707e-49 | 4.395593e-46 |
| MsG0580024166.01 | MsG0880042966.01 | 0.818127 | 2.304794e-52 | 1.710500e-49 |
| MsG0580024166.01 | MsG0880044574.01 | 0.830826 | 2.359646e-55 | 2.514747e-52 |
| MsG0580024166.01 | MsG0880045736.01 | 0.817913 | 2.576551e-52 | 1.900965e-49 |
| MsG0580024166.01 | MsG0880045765.01 | 0.808126 | 3.608724e-50 | 2.046551e-47 |
| MsG0580024166.01 | MsG0880045896.01 | 0.815048 | 1.128732e-51 | 7.699229e-49 |
| MsG0580024166.01 | MsG0880045937.01 | 0.820380 | 7.071478e-53 | 5.586767e-50 |
| MsG0580024166.01 | MsG0880047427.01 | 0.826053 | 3.350738e-54 | 3.108130e-51 |
| MsG0380015164.01 | MsG0580024166.01 | 0.828739 | 7.605976e-55 | 7.625736e-52 |
| MsG0380015440.01 | MsG0580024166.01 | 0.800014 | 1.757984e-48 | 8.097841e-46 |
| MsG0380015555.01 | MsG0580024166.01 | 0.801854 | 7.396145e-49 | 3.569656e-46 |
| MsG0380015566.01 | MsG0580024166.01 | 0.813527 | 2.446717e-51 | 1.601741e-48 |
| MsG0380015720.01 | MsG0580024166.01 | 0.815959 | 7.076117e-52 | 4.948691e-49 |
| MsG0380016064.01 | MsG0580024166.01 | 0.802931 | 4.438135e-49 | 2.201469e-46 |
| MsG0380016910.01 | MsG0580024166.01 | 0.844205 | 8.734955e-59 | 1.399999e-55 |
| MsG0380017680.01 | MsG0580024166.01 | 0.815797 | 7.689602e-52 | 5.354329e-49 |
| MsG0480018163.01 | MsG0580024166.01 | 0.832545 | 8.893085e-56 | 9.971868e-53 |
| MsG0280007222.01 | MsG0580024166.01 | 0.809324 | 2.002086e-50 | 1.171931e-47 |
| MsG0280007547.01 | MsG0580024166.01 | 0.806927 | 6.484622e-50 | 3.564157e-47 |
| MsG0280007955.01 | MsG0580024166.01 | 0.819200 | 1.315971e-52 | 1.005959e-49 |
| MsG0280009395.01 | MsG0580024166.01 | -0.818564 | 1.834906e-52 | 1.378268e-49 |
| MsG0280010443.01 | MsG0580024166.01 | 0.837103 | 6.330508e-57 | 8.139220e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024166.01.T01 | MTR_5g084950 | 79.775 | 178 | 17 | 2 | 1 | 160 | 1 | 177 | 4.18e-94 | 281 |
| MsG0580024166.01.T01 | MTR_5g006650 | 82.716 | 162 | 19 | 4 | 1 | 156 | 1 | 159 | 8.91e-86 | 254 |
| MsG0580024166.01.T01 | MTR_7g029365 | 47.482 | 139 | 48 | 3 | 37 | 151 | 41 | 178 | 4.77e-38 | 134 |
| MsG0580024166.01.T01 | MTR_7g029365 | 42.424 | 165 | 70 | 3 | 37 | 177 | 41 | 204 | 6.74e-37 | 133 |
| MsG0580024166.01.T01 | MTR_0595s0010 | 48.739 | 119 | 53 | 2 | 38 | 149 | 59 | 176 | 2.72e-36 | 130 |
| MsG0580024166.01.T01 | MTR_3g081060 | 49.600 | 125 | 59 | 2 | 47 | 168 | 69 | 192 | 1.41e-35 | 130 |
| MsG0580024166.01.T01 | MTR_7g081050 | 39.080 | 174 | 85 | 3 | 7 | 160 | 8 | 180 | 3.41e-35 | 129 |
| MsG0580024166.01.T01 | MTR_6g023750 | 51.818 | 110 | 45 | 2 | 47 | 149 | 11 | 119 | 1.52e-34 | 126 |
| MsG0580024166.01.T01 | MTR_3g081040 | 49.593 | 123 | 58 | 2 | 47 | 166 | 65 | 186 | 2.09e-34 | 127 |
| MsG0580024166.01.T01 | MTR_6g023715 | 52.252 | 111 | 45 | 3 | 47 | 150 | 68 | 177 | 4.81e-34 | 125 |
| MsG0580024166.01.T01 | MTR_7g081060 | 39.779 | 181 | 82 | 6 | 11 | 168 | 12 | 188 | 6.94e-34 | 125 |
| MsG0580024166.01.T01 | MTR_3g080980 | 46.721 | 122 | 63 | 1 | 47 | 166 | 65 | 186 | 1.35e-33 | 124 |
| MsG0580024166.01.T01 | MTR_6g023740 | 51.818 | 110 | 45 | 2 | 47 | 149 | 68 | 176 | 2.51e-33 | 124 |
| MsG0580024166.01.T01 | MTR_6g033975 | 48.000 | 125 | 60 | 3 | 47 | 168 | 66 | 188 | 8.27e-33 | 122 |
| MsG0580024166.01.T01 | MTR_6g033965 | 47.200 | 125 | 61 | 3 | 47 | 168 | 66 | 188 | 1.56e-32 | 121 |
| MsG0580024166.01.T01 | MTR_1g107330 | 36.170 | 141 | 80 | 1 | 47 | 177 | 57 | 197 | 7.82e-27 | 105 |
| MsG0580024166.01.T01 | MTR_1g107330 | 41.964 | 112 | 65 | 0 | 66 | 177 | 86 | 197 | 1.41e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024166.01.T01 | AT5G14180 | 39.752 | 161 | 89 | 2 | 38 | 191 | 64 | 223 | 2.58e-36 | 129 |
| MsG0580024166.01.T01 | AT5G14180 | 39.752 | 161 | 89 | 2 | 38 | 191 | 64 | 223 | 2.92e-36 | 129 |
| MsG0580024166.01.T01 | AT5G14180 | 39.752 | 161 | 89 | 2 | 38 | 191 | 64 | 223 | 2.11e-35 | 129 |
| MsG0580024166.01.T01 | AT2G15230 | 43.590 | 117 | 61 | 2 | 47 | 160 | 54 | 168 | 2.86e-29 | 112 |
| MsG0580024166.01.T01 | AT5G14180 | 38.462 | 117 | 72 | 0 | 75 | 191 | 7 | 123 | 1.68e-24 | 99.0 |
| MsG0580024166.01.T01 | AT5G14180 | 37.719 | 114 | 71 | 0 | 78 | 191 | 1 | 114 | 7.69e-23 | 94.4 |
Find 46 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATAATGGATTTGATATT+TGG | 0.128774 | 5:+1505701 | MsG0580024166.01.T01:CDS |
| GGTTTCAAATTTAGGATTAT+TGG | 0.171179 | 5:+1506153 | MsG0580024166.01.T01:intron |
| GCATTTCTGTTGGCAGATAA+TGG | 0.272759 | 5:+1505688 | MsG0580024166.01.T01:CDS |
| TGTATGTCCATGACTATATT+TGG | 0.309072 | 5:-1505743 | None:intergenic |
| TCGAGATTAGAGCATGTTAA+AGG | 0.316212 | 5:+1506625 | MsG0580024166.01.T01:CDS |
| ATTTGTCCAATTGTTGATCT+TGG | 0.324006 | 5:-1506397 | None:intergenic |
| ACAACTGGTATACTATTTCC+AGG | 0.356755 | 5:-1505361 | None:intergenic |
| AAATTTAGGATTATTGGAAT+TGG | 0.360921 | 5:+1506159 | MsG0580024166.01.T01:intron |
| CTATTTCCAGGTTTCCCTCT+TGG | 0.366433 | 5:-1505349 | None:intergenic |
| CAATGCAGTAATAGTGCTTA+AGG | 0.385178 | 5:-1504790 | None:intergenic |
| CAGTTTGATCATGCACATAC+TGG | 0.396014 | 5:-1506223 | None:intergenic |
| TGCACATACTGGAATGTTGC+TGG | 0.419751 | 5:-1506212 | None:intergenic |
| TGTAGGGACTTTGGTTGCAT+TGG | 0.430966 | 5:+1506362 | MsG0580024166.01.T01:intron |
| CAGTATGTGCATGATCAAAC+TGG | 0.431605 | 5:+1506224 | MsG0580024166.01.T01:CDS |
| CTTAACAAGTCTGCCTAATA+CGG | 0.438222 | 5:+1506512 | MsG0580024166.01.T01:intron |
| AGCTTGACTGTTGTCTCCAT+TGG | 0.444161 | 5:-1506589 | None:intergenic |
| CATACACCATCATTGAGTTC+TGG | 0.445699 | 5:-1504819 | None:intergenic |
| TTTCTTCCAAGATCAACAAT+TGG | 0.456885 | 5:+1506391 | MsG0580024166.01.T01:CDS |
| AGTCCATGTTGTAGCACAAC+TGG | 0.457838 | 5:-1505376 | None:intergenic |
| GCTACAACATGGACTGTTCA+TGG | 0.458816 | 5:+1505384 | MsG0580024166.01.T01:CDS |
| AGGATTATTGGAATTGGTCA+TGG | 0.460448 | 5:+1506165 | MsG0580024166.01.T01:intron |
| CAGAATCACAAGTGTTATTG+AGG | 0.464384 | 5:-1504727 | None:intergenic |
| CTTAAGCACTATTACTGCAT+TGG | 0.510075 | 5:+1504791 | MsG0580024166.01.T01:CDS |
| GGATTATTGGAATTGGTCAT+GGG | 0.520687 | 5:+1506166 | MsG0580024166.01.T01:intron |
| AAGCACTATTACTGCATTGG+CGG | 0.520909 | 5:+1504794 | MsG0580024166.01.T01:CDS |
| TCAATCTCTTGCATTTCTGT+TGG | 0.522500 | 5:+1505678 | MsG0580024166.01.T01:CDS |
| ATTCTACCAAGAGGGAAACC+TGG | 0.522863 | 5:+1505343 | MsG0580024166.01.T01:CDS |
| AATGCAAGAGATTGACTTGG+TGG | 0.533436 | 5:-1505670 | None:intergenic |
| AATGCAGTAATAGTGCTTAA+GGG | 0.542746 | 5:-1504789 | None:intergenic |
| CTCTGAGAGATGGTCTCGAA+GGG | 0.567691 | 5:+1506559 | MsG0580024166.01.T01:CDS |
| TGCCTAATACGGAAAACTTG+TGG | 0.572444 | 5:+1506523 | MsG0580024166.01.T01:CDS |
| CTCGAAGGGATTTACTCCAA+TGG | 0.572881 | 5:+1506573 | MsG0580024166.01.T01:CDS |
| TCTCTGAGAGATGGTCTCGA+AGG | 0.577278 | 5:+1506558 | MsG0580024166.01.T01:CDS |
| AGAATCACAAGTGTTATTGA+GGG | 0.586161 | 5:-1504726 | None:intergenic |
| CTTGCACATTCTCTGAGAGA+TGG | 0.588893 | 5:+1506549 | MsG0580024166.01.T01:CDS |
| TGCAAAGAATTCTACCAAGA+GGG | 0.597057 | 5:+1505335 | MsG0580024166.01.T01:CDS |
| ACACTTGTGATTCTGTTCTG+TGG | 0.598435 | 5:+1504735 | MsG0580024166.01.T01:CDS |
| CGAGGAACCAAATATAGTCA+TGG | 0.610090 | 5:+1505736 | MsG0580024166.01.T01:CDS |
| GCGGCACCAGAACTCAATGA+TGG | 0.611110 | 5:+1504813 | MsG0580024166.01.T01:CDS |
| CTCTACGTTGGTCACTACAC+AGG | 0.616394 | 5:+1506256 | MsG0580024166.01.T01:CDS |
| ATACCAGTTGTGCTACAACA+TGG | 0.618824 | 5:+1505373 | MsG0580024166.01.T01:CDS |
| TGGACAAAACTACTCTACGT+TGG | 0.629526 | 5:+1506244 | MsG0580024166.01.T01:CDS |
| CTAATACGGAAAACTTGTGG+AGG | 0.641106 | 5:+1506526 | MsG0580024166.01.T01:CDS |
| AGAAATGCAAGAGATTGACT+TGG | 0.662580 | 5:-1505673 | None:intergenic |
| ATGCAAAGAATTCTACCAAG+AGG | 0.666461 | 5:+1505334 | MsG0580024166.01.T01:CDS |
| ATTTGGATTGCTAACACACG+AGG | 0.667950 | 5:+1505718 | MsG0580024166.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTACTATATTACA+TGG | + | Chr5:1505802-1505821 | MsG0580024166.01.T01:intron | 10.0% |
| !!! | ATATGTATGTAATTGTTTTT+AGG | + | Chr5:1505282-1505301 | MsG0580024166.01.T01:intron | 15.0% |
| !! | AATAAGATGAAAACAACTTA+TGG | - | Chr5:1505522-1505541 | None:intergenic | 20.0% |
| !! | ACATTGAATTATATATGAAG+AGG | - | Chr5:1506314-1506333 | None:intergenic | 20.0% |
| !! | TAAACTCAAATAAATCAATC+CGG | - | Chr5:1505436-1505455 | None:intergenic | 20.0% |
| !! | TAATATCAGGTTTCAAATTT+AGG | + | Chr5:1506145-1506164 | MsG0580024166.01.T01:intron | 20.0% |
| !! | TATAAAAATAGCTTATGTCA+TGG | + | Chr5:1505496-1505515 | MsG0580024166.01.T01:intron | 20.0% |
| !! | TGTATTAATCTTCTTAATTC+AGG | - | Chr5:1504937-1504956 | None:intergenic | 20.0% |
| !! | TTATTCTATCCTTAAAACTA+AGG | - | Chr5:1504855-1504874 | None:intergenic | 20.0% |
| !!! | AAATTTAGGATTATTGGAAT+TGG | + | Chr5:1506159-1506178 | MsG0580024166.01.T01:intron | 20.0% |
| !!! | ATCATTTTCTAATAACAACT+CGG | + | Chr5:1505765-1505784 | MsG0580024166.01.T01:CDS | 20.0% |
| !!! | ATTGTTGAATTCTTTTTTGT+AGG | + | Chr5:1506345-1506364 | MsG0580024166.01.T01:intron | 20.0% |
| !!! | CAACATATTCTTTTAAATTG+TGG | - | Chr5:1505954-1505973 | None:intergenic | 20.0% |
| !!! | TTGTTGAATTCTTTTTTGTA+GGG | + | Chr5:1506346-1506365 | MsG0580024166.01.T01:intron | 20.0% |
| ! | AAAGAAATTACTACCCTTTA+AGG | - | Chr5:1506489-1506508 | None:intergenic | 25.0% |
| ! | ATACATCAGAAAATACATGA+TGG | + | Chr5:1504952-1504971 | MsG0580024166.01.T01:intron | 25.0% |
| ! | TATTAGCAATGGAATCAAAT+TGG | - | Chr5:1506130-1506149 | None:intergenic | 25.0% |
| !! | GGTTTCAAATTTAGGATTAT+TGG | + | Chr5:1506153-1506172 | MsG0580024166.01.T01:intron | 25.0% |
| !!! | ATTTTCGAATTTAGCCTTAA+AGG | + | Chr5:1506472-1506491 | MsG0580024166.01.T01:intron | 25.0% |
| !!! | CAGATAATGGATTTGATATT+TGG | + | Chr5:1505701-1505720 | MsG0580024166.01.T01:CDS | 25.0% |
| !!! | TATGATTCATGTGTTTTTGT+AGG | + | Chr5:1505624-1505643 | MsG0580024166.01.T01:intron | 25.0% |
| !!! | TCATCTTATTTTCATTCTCA+AGG | + | Chr5:1505532-1505551 | MsG0580024166.01.T01:intron | 25.0% |
| !!! | TTTTCGAATTTAGCCTTAAA+GGG | + | Chr5:1506473-1506492 | MsG0580024166.01.T01:intron | 25.0% |
| !!! | TTTTGTAAGCCTTAGTTTTA+AGG | + | Chr5:1504843-1504862 | MsG0580024166.01.T01:intron | 25.0% |
| AAACATGTGTGATACTGTTT+AGG | + | Chr5:1505467-1505486 | MsG0580024166.01.T01:intron | 30.0% | |
| AATGCAGTAATAGTGCTTAA+GGG | - | Chr5:1504792-1504811 | None:intergenic | 30.0% | |
| AGAAAACAGAATAGAAACAC+AGG | - | Chr5:1504898-1504917 | None:intergenic | 30.0% | |
| AGCAATATATACATAGTAGC+TGG | - | Chr5:1505222-1505241 | None:intergenic | 30.0% | |
| AGTACTCGAAATGAAAATCT+CGG | + | Chr5:1506080-1506099 | MsG0580024166.01.T01:intron | 30.0% | |
| ATTTGTCCAATTGTTGATCT+TGG | - | Chr5:1506400-1506419 | None:intergenic | 30.0% | |
| TCTCAAAATCCTTTATGTTG+TGG | + | Chr5:1505909-1505928 | MsG0580024166.01.T01:intron | 30.0% | |
| TGTATGTCCATGACTATATT+TGG | - | Chr5:1505746-1505765 | None:intergenic | 30.0% | |
| TTAACAGTCACTGTACAAAT+TGG | + | Chr5:1506448-1506467 | MsG0580024166.01.T01:intron | 30.0% | |
| TTGAAACCTGATATTAGCAA+TGG | - | Chr5:1506141-1506160 | None:intergenic | 30.0% | |
| TTGATTCCATTGCTAATATC+AGG | + | Chr5:1506132-1506151 | MsG0580024166.01.T01:intron | 30.0% | |
| TTTCTTCCAAGATCAACAAT+TGG | + | Chr5:1506391-1506410 | MsG0580024166.01.T01:CDS | 30.0% | |
| ! | AGAATCACAAGTGTTATTGA+GGG | - | Chr5:1504729-1504748 | None:intergenic | 30.0% |
| ! | GGATGATTTTGGATATTCAA+TGG | - | Chr5:1506006-1506025 | None:intergenic | 30.0% |
| ! | TTTTAAATTGTGGTCTGCAA+CGG | - | Chr5:1505944-1505963 | None:intergenic | 30.0% |
| !! | ATTCATGTGTTTTTGTAGGA+TGG | + | Chr5:1505628-1505647 | MsG0580024166.01.T01:intron | 30.0% |
| !! | TTTTAGGTGACAACAAAAGA+TGG | + | Chr5:1505298-1505317 | MsG0580024166.01.T01:intron | 30.0% |
| !!! | ATTCTTTTTTGTAGGGACTT+TGG | + | Chr5:1506353-1506372 | MsG0580024166.01.T01:intron | 30.0% |
| !!! | TATTACATGGTTTTAAGTCG+CGG | + | Chr5:1505815-1505834 | MsG0580024166.01.T01:intron | 30.0% |
| AACAGAATAGAAACACAGGA+AGG | - | Chr5:1504894-1504913 | None:intergenic | 35.0% | |
| AATATGTTGCTGCATTTCTC+TGG | + | Chr5:1505965-1505984 | MsG0580024166.01.T01:intron | 35.0% | |
| ACAACTGGTATACTATTTCC+AGG | - | Chr5:1505364-1505383 | None:intergenic | 35.0% | |
| AGAAATGCAAGAGATTGACT+TGG | - | Chr5:1505676-1505695 | None:intergenic | 35.0% | |
| AGGATTATTGGAATTGGTCA+TGG | + | Chr5:1506165-1506184 | MsG0580024166.01.T01:intron | 35.0% | |
| ATGCAAAGAATTCTACCAAG+AGG | + | Chr5:1505334-1505353 | MsG0580024166.01.T01:CDS | 35.0% | |
| CAATGCAGTAATAGTGCTTA+AGG | - | Chr5:1504793-1504812 | None:intergenic | 35.0% | |
| CACTACACAGGTGATTAAAT+TGG | + | Chr5:1506268-1506287 | MsG0580024166.01.T01:intron | 35.0% | |
| CTTAACAAGTCTGCCTAATA+CGG | + | Chr5:1506512-1506531 | MsG0580024166.01.T01:intron | 35.0% | |
| CTTAAGCACTATTACTGCAT+TGG | + | Chr5:1504791-1504810 | MsG0580024166.01.T01:CDS | 35.0% | |
| GGATTATTGGAATTGGTCAT+GGG | + | Chr5:1506166-1506185 | MsG0580024166.01.T01:intron | 35.0% | |
| GTGGTGGTTACTATAACTAT+AGG | + | Chr5:1505410-1505429 | MsG0580024166.01.T01:intron | 35.0% | |
| TAACACTTGTGATTCTTCTG+TGG | + | Chr5:1504993-1505012 | MsG0580024166.01.T01:intron | 35.0% | |
| TCAATCTCTTGCATTTCTGT+TGG | + | Chr5:1505678-1505697 | MsG0580024166.01.T01:CDS | 35.0% | |
| TGAATATCCAAAATCATCCG+TGG | + | Chr5:1506007-1506026 | MsG0580024166.01.T01:intron | 35.0% | |
| TGCAAAGAATTCTACCAAGA+GGG | + | Chr5:1505335-1505354 | MsG0580024166.01.T01:CDS | 35.0% | |
| TGGTTACTATAACTATAGGC+CGG | + | Chr5:1505414-1505433 | MsG0580024166.01.T01:intron | 35.0% | |
| ! | CAGAATCACAAGTGTTATTG+AGG | - | Chr5:1504730-1504749 | None:intergenic | 35.0% |
| ! | CGGATCATGTTAGTACTTTT+AGG | + | Chr5:1506100-1506119 | MsG0580024166.01.T01:intron | 35.0% |
| ! | TACAATTCCACGGATGATTT+TGG | - | Chr5:1506017-1506036 | None:intergenic | 35.0% |
| !! | GAGATTTTCATTTCGAGTAC+TGG | - | Chr5:1506081-1506100 | None:intergenic | 35.0% |
| !!! | GGATTTTGAGATCTTCACAA+TGG | - | Chr5:1505900-1505919 | None:intergenic | 35.0% |
| AAGCACTATTACTGCATTGG+CGG | + | Chr5:1504794-1504813 | MsG0580024166.01.T01:CDS | 40.0% | |
| ACACTTGTGATTCTGTTCTG+TGG | + | Chr5:1504735-1504754 | MsG0580024166.01.T01:CDS | 40.0% | |
| ATACCAGTTGTGCTACAACA+TGG | + | Chr5:1505373-1505392 | MsG0580024166.01.T01:CDS | 40.0% | |
| ATCATCCGTGGAATTGTAAG+AGG | + | Chr5:1506019-1506038 | MsG0580024166.01.T01:intron | 40.0% | |
| ATTAAGCGGCCACAACATAA+AGG | - | Chr5:1505921-1505940 | None:intergenic | 40.0% | |
| ATTTGGATTGCTAACACACG+AGG | + | Chr5:1505718-1505737 | MsG0580024166.01.T01:CDS | 40.0% | |
| CAGTATGTGCATGATCAAAC+TGG | + | Chr5:1506224-1506243 | MsG0580024166.01.T01:CDS | 40.0% | |
| CAGTTTGATCATGCACATAC+TGG | - | Chr5:1506226-1506245 | None:intergenic | 40.0% | |
| CATACACCATCATTGAGTTC+TGG | - | Chr5:1504822-1504841 | None:intergenic | 40.0% | |
| CGAGGAACCAAATATAGTCA+TGG | + | Chr5:1505736-1505755 | MsG0580024166.01.T01:CDS | 40.0% | |
| CGGTTACACTACAAACTTTG+TGG | + | Chr5:1505835-1505854 | MsG0580024166.01.T01:intron | 40.0% | |
| CTAATACGGAAAACTTGTGG+AGG | + | Chr5:1506526-1506545 | MsG0580024166.01.T01:CDS | 40.0% | |
| CTATGCTTGTGAAGAACACT+TGG | + | Chr5:1505121-1505140 | MsG0580024166.01.T01:intron | 40.0% | |
| GCATTTCTGTTGGCAGATAA+TGG | + | Chr5:1505688-1505707 | MsG0580024166.01.T01:CDS | 40.0% | |
| GTGGAAAAATGCAGTCAATG+TGG | + | Chr5:1505854-1505873 | MsG0580024166.01.T01:intron | 40.0% | |
| TCATCACTAGTGAAGACACA+AGG | + | Chr5:1505098-1505117 | MsG0580024166.01.T01:intron | 40.0% | |
| TGCCTAATACGGAAAACTTG+TGG | + | Chr5:1506523-1506542 | MsG0580024166.01.T01:CDS | 40.0% | |
| TGGACAAAACTACTCTACGT+TGG | + | Chr5:1506244-1506263 | MsG0580024166.01.T01:CDS | 40.0% | |
| TGTGGTCAAAATTGCAGTTG+CGG | + | Chr5:1505872-1505891 | MsG0580024166.01.T01:intron | 40.0% | |
| ! | CTCCACAAGTTTTCCGTATT+AGG | - | Chr5:1506528-1506547 | None:intergenic | 40.0% |
| ! | TTTTGTAGGATGGTGTGACA+TGG | + | Chr5:1505638-1505657 | MsG0580024166.01.T01:intron | 40.0% |
| !! | AATGCAAGAGATTGACTTGG+TGG | - | Chr5:1505673-1505692 | None:intergenic | 40.0% |
| AGCTTGACTGTTGTCTCCAT+TGG | - | Chr5:1506592-1506611 | None:intergenic | 45.0% | |
| AGTCCATGTTGTAGCACAAC+TGG | - | Chr5:1505379-1505398 | None:intergenic | 45.0% | |
| ATTCTACCAAGAGGGAAACC+TGG | + | Chr5:1505343-1505362 | MsG0580024166.01.T01:CDS | 45.0% | |
| CTATTTCCAGGTTTCCCTCT+TGG | - | Chr5:1505352-1505371 | None:intergenic | 45.0% | |
| CTCGAAGGGATTTACTCCAA+TGG | + | Chr5:1506573-1506592 | MsG0580024166.01.T01:CDS | 45.0% | |
| GAGAGCCTCTTACAATTCCA+CGG | - | Chr5:1506027-1506046 | None:intergenic | 45.0% | |
| TGCACATACTGGAATGTTGC+TGG | - | Chr5:1506215-1506234 | None:intergenic | 45.0% | |
| TGTAGGGACTTTGGTTGCAT+TGG | + | Chr5:1506362-1506381 | MsG0580024166.01.T01:intron | 45.0% | |
| TTGGCACCAGAACTCAATGA+TGG | + | Chr5:1505068-1505087 | MsG0580024166.01.T01:intron | 45.0% | |
| ! | CATGGACTGTTCATGGTTAG+TGG | + | Chr5:1505391-1505410 | MsG0580024166.01.T01:intron | 45.0% |
| ! | CTTGCACATTCTCTGAGAGA+TGG | + | Chr5:1506549-1506568 | MsG0580024166.01.T01:CDS | 45.0% |
| ! | GCTACAACATGGACTGTTCA+TGG | + | Chr5:1505384-1505403 | MsG0580024166.01.T01:CDS | 45.0% |
| CTCTACGTTGGTCACTACAC+AGG | + | Chr5:1506256-1506275 | MsG0580024166.01.T01:CDS | 50.0% | |
| GAGGCTCTCAACTTAGTCTC+TGG | + | Chr5:1506038-1506057 | MsG0580024166.01.T01:intron | 50.0% | |
| GGACTGTTCATGGTTAGTGG+TGG | + | Chr5:1505394-1505413 | MsG0580024166.01.T01:intron | 50.0% | |
| ! | CTCTGAGAGATGGTCTCGAA+GGG | + | Chr5:1506559-1506578 | MsG0580024166.01.T01:CDS | 50.0% |
| ! | TCTCTGAGAGATGGTCTCGA+AGG | + | Chr5:1506558-1506577 | MsG0580024166.01.T01:CDS | 50.0% |
| !! | GTGGTCTGCAACGGATTAAG+CGG | - | Chr5:1505935-1505954 | None:intergenic | 50.0% |
| GCGGCACCAGAACTCAATGA+TGG | + | Chr5:1504813-1504832 | MsG0580024166.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1504711 | 1506644 | 1504711 | ID=MsG0580024166.01;Name=MsG0580024166.01 |
| Chr5 | mRNA | 1504711 | 1506644 | 1504711 | ID=MsG0580024166.01.T01;Parent=MsG0580024166.01;Name=MsG0580024166.01.T01;_AED=0.59;_eAED=0.65;_QI=0|0|0|0.66|0.8|0.66|6|0|219 |
| Chr5 | exon | 1504711 | 1504846 | 1504711 | ID=MsG0580024166.01.T01:exon:23402;Parent=MsG0580024166.01.T01 |
| Chr5 | exon | 1505317 | 1505405 | 1505317 | ID=MsG0580024166.01.T01:exon:23403;Parent=MsG0580024166.01.T01 |
| Chr5 | exon | 1505646 | 1505786 | 1505646 | ID=MsG0580024166.01.T01:exon:23404;Parent=MsG0580024166.01.T01 |
| Chr5 | exon | 1506167 | 1506277 | 1506167 | ID=MsG0580024166.01.T01:exon:23405;Parent=MsG0580024166.01.T01 |
| Chr5 | exon | 1506367 | 1506425 | 1506367 | ID=MsG0580024166.01.T01:exon:23406;Parent=MsG0580024166.01.T01 |
| Chr5 | exon | 1506521 | 1506644 | 1506521 | ID=MsG0580024166.01.T01:exon:23407;Parent=MsG0580024166.01.T01 |
| Chr5 | CDS | 1504711 | 1504846 | 1504711 | ID=MsG0580024166.01.T01:cds;Parent=MsG0580024166.01.T01 |
| Chr5 | CDS | 1505317 | 1505405 | 1505317 | ID=MsG0580024166.01.T01:cds;Parent=MsG0580024166.01.T01 |
| Chr5 | CDS | 1505646 | 1505786 | 1505646 | ID=MsG0580024166.01.T01:cds;Parent=MsG0580024166.01.T01 |
| Chr5 | CDS | 1506167 | 1506277 | 1506167 | ID=MsG0580024166.01.T01:cds;Parent=MsG0580024166.01.T01 |
| Chr5 | CDS | 1506367 | 1506425 | 1506367 | ID=MsG0580024166.01.T01:cds;Parent=MsG0580024166.01.T01 |
| Chr5 | CDS | 1506521 | 1506644 | 1506521 | ID=MsG0580024166.01.T01:cds;Parent=MsG0580024166.01.T01 |
| Gene Sequence |
| Protein sequence |
