AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025663.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025663.01.T01 MTR_5g032440 67.633 207 13 2 1 207 1 153 1.82e-88 259
MsG0580025663.01.T01 MTR_7g116795 50.000 48 24 0 160 207 84 131 3.75e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025663.01.T01 AT4G38100 36.364 132 54 2 76 207 60 161 8.14e-19 81.3
MsG0580025663.01.T01 AT4G38100 36.364 132 54 2 76 207 20 121 1.01e-18 80.1
MsG0580025663.01.T01 AT4G01150 56.250 48 21 0 160 207 87 134 1.18e-13 67.0

Find 58 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTTCTCTTGCTGTTTA+TGG 0.133297 5:-22190062 MsG0580025663.01.T01:CDS
CGGAGAGGAAAGAGGGTTTA+TGG 0.184390 5:+22194102 None:intergenic
CTCAGATTAGGAATACTAAA+AGG 0.213483 5:+22193139 None:intergenic
CCATCAGGCAACACTTCCTT+TGG 0.237654 5:+22193220 None:intergenic
AGCGAAGGAATTGGGAAGTT+TGG 0.246871 5:+22194130 None:intergenic
CTGTTGCCCTTACATTTCTA+AGG 0.263690 5:+22193356 None:intergenic
CCCTACAACTTCGAACAGTT+TGG 0.332383 5:+22189877 None:intergenic
TAGGGCTTGGATATTCATTA+TGG 0.334199 5:-22189859 MsG0580025663.01.T01:CDS
AAGAATGAAAACCCTAGTTT+TGG 0.353276 5:+22194041 None:intergenic
TGGTGAAAAGCGAAGGAATT+GGG 0.370089 5:+22194122 None:intergenic
CTTCAATCTTTACCAAAACT+AGG 0.402962 5:-22194053 MsG0580025663.01.T01:CDS
TGGTTAACTTCGGCCGTTGT+TGG 0.408848 5:-22190017 MsG0580025663.01.T01:CDS
TCTCTTGCTGTTTATGGTGG+TGG 0.413364 5:-22190056 MsG0580025663.01.T01:CDS
CTGTTCGAAGTTGTAGGGCT+TGG 0.415379 5:-22189872 MsG0580025663.01.T01:CDS
CCTACAACTTCGAACAGTTT+GGG 0.418578 5:+22189878 None:intergenic
CATCAGGCAACACTTCCTTT+GGG 0.427132 5:+22193221 None:intergenic
AACGGCAGGCCTTCTCCATC+AGG 0.429232 5:+22193205 None:intergenic
CGAGATAAGAGTGCATGTTT+CGG 0.450847 5:+22194082 None:intergenic
ATGGTGAAAAGCGAAGGAAT+TGG 0.452245 5:+22194121 None:intergenic
AGTTAACCACAGGGCCACTA+TGG 0.453404 5:+22190031 None:intergenic
CCCAAACTGTTCGAAGTTGT+AGG 0.459632 5:-22189878 MsG0580025663.01.T01:CDS
CCAAACTGTTCGAAGTTGTA+GGG 0.475613 5:-22189877 MsG0580025663.01.T01:CDS
ATATACACGCTACTCAGATT+AGG 0.481135 5:+22193127 None:intergenic
TGATGGTGTGATAACTTTAG+AGG 0.485413 5:-22193284 MsG0580025663.01.T01:CDS
TCAGATTAGGAATACTAAAA+GGG 0.498994 5:+22193140 None:intergenic
TTCAATCTTTACCAAAACTA+GGG 0.499550 5:-22194052 MsG0580025663.01.T01:intron
GAGGAGAATTCAAGCGGTGC+TGG 0.507621 5:-22193328 MsG0580025663.01.T01:CDS
CAAATACCATAACCAACATT+AGG 0.511026 5:+22189803 None:intergenic
TCAAGGTATGTGCCTAATGT+TGG 0.514949 5:-22189815 MsG0580025663.01.T01:CDS
CAATGAAACTGTGGAGAATG+AGG 0.527662 5:-22193245 MsG0580025663.01.T01:CDS
CATGTTTCGGAGAGGAAAGA+GGG 0.529457 5:+22194095 None:intergenic
GCATGTTTCGGAGAGGAAAG+AGG 0.548777 5:+22194094 None:intergenic
CCAAAGGAAGTGTTGCCTGA+TGG 0.551553 5:-22193220 MsG0580025663.01.T01:CDS
TATCGAGCAAATCCAACGGC+AGG 0.560415 5:+22193191 None:intergenic
ACTTCTCTTGCTGTTTATGG+TGG 0.569238 5:-22190059 MsG0580025663.01.T01:CDS
AGTGGCCCTGTGGTTAACTT+CGG 0.569289 5:-22190027 MsG0580025663.01.T01:CDS
TATGTGCCTAATGTTGGTTA+TGG 0.571195 5:-22189809 MsG0580025663.01.T01:CDS
GGAAGTTTGGAAAGAGTGAG+AGG 0.573274 5:+22194143 None:intergenic
ACCATAAACAGCAAGAGAAG+TGG 0.590884 5:+22190061 None:intergenic
TGCTATTGATTCTATCCCAG+TGG 0.595990 5:-22189994 MsG0580025663.01.T01:intron
CAACGGCCGAAGTTAACCAC+AGG 0.598421 5:+22190021 None:intergenic
TTAGGAATACTAAAAGGGAA+AGG 0.598955 5:+22193145 None:intergenic
TGATGGAGAAGGCCTGCCGT+TGG 0.606276 5:-22193203 MsG0580025663.01.T01:CDS
GGGTTTATGGTGAAAAGCGA+AGG 0.612257 5:+22194115 None:intergenic
TTATGGTGGTGGTGCCATAG+TGG 0.612837 5:-22190045 MsG0580025663.01.T01:CDS
AGCACCGCTTGAATTCTCCT+CGG 0.618327 5:+22193330 None:intergenic
TGTAAGGGCAACAGCATCCG+AGG 0.621783 5:-22193347 MsG0580025663.01.T01:CDS
TGTGGAGAATGAGGACCCAA+AGG 0.634542 5:-22193236 MsG0580025663.01.T01:CDS
GAAGTGTTGCCTGATGGAGA+AGG 0.638111 5:-22193214 MsG0580025663.01.T01:CDS
ATACCTTGAAAAGCAAGTAA+CGG 0.655475 5:+22189829 None:intergenic
AAATGGATACAATGAAACTG+TGG 0.659004 5:-22193254 MsG0580025663.01.T01:CDS
AGAATCAATAGCACCAACAA+CGG 0.660305 5:+22190004 None:intergenic
AGCTTATCGAGCAAATCCAA+CGG 0.662252 5:+22193187 None:intergenic
CGTGTATATGATGATGCATG+TGG 0.684126 5:-22193113 MsG0580025663.01.T01:intron
GTGGTGCCATAGTGGCCCTG+TGG 0.698214 5:-22190037 MsG0580025663.01.T01:CDS
TAAGAGTGCATGTTTCGGAG+AGG 0.700407 5:+22194087 None:intergenic
GCATCCGAGGAGAATTCAAG+CGG 0.703423 5:-22193334 MsG0580025663.01.T01:CDS
AACGGCCGAAGTTAACCACA+GGG 0.725785 5:+22190022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATAAAATTTAGAGTT+TGG + Chr5:22192992-22193011 None:intergenic 10.0%
!!! TTCAAAATTTCATTTTTAAT+TGG - Chr5:22190351-22190370 MsG0580025663.01.T01:intron 10.0%
!!! TTTTAAAATAAAGTCAATTT+AGG + Chr5:22192420-22192439 None:intergenic 10.0%
!!! TTTTAATTGGATAAAATTAA+GGG - Chr5:22190364-22190383 MsG0580025663.01.T01:intron 10.0%
!!! TTTTTAATTGGATAAAATTA+AGG - Chr5:22190363-22190382 MsG0580025663.01.T01:intron 10.0%
!! AAATACAAACAAATCTAAAA+TGG + Chr5:22192888-22192907 None:intergenic 15.0%
!! ATAATATAGCATCTTTAAAT+TGG - Chr5:22191171-22191190 MsG0580025663.01.T01:intron 15.0%
!!! ACAAAATTTAATTTAGGTTT+TGG - Chr5:22192765-22192784 MsG0580025663.01.T01:intron 15.0%
!!! TTTTATTATATTCATGTGTT+TGG - Chr5:22193001-22193020 MsG0580025663.01.T01:intron 15.0%
!! AAATAACAAATATATACCAC+TGG + Chr5:22193988-22194007 None:intergenic 20.0%
!! AATAAAAAATTCATGTGCAA+TGG - Chr5:22190422-22190441 MsG0580025663.01.T01:intron 20.0%
!! AATAACAAATATATACCACT+GGG + Chr5:22193987-22194006 None:intergenic 20.0%
!! ACTTAATTCACAATCATATT+AGG + Chr5:22193676-22193695 None:intergenic 20.0%
!! GTATACAATAAAGTGAATTT+AGG + Chr5:22192479-22192498 None:intergenic 20.0%
!! TATATGGTTGAAATTTGAAT+TGG + Chr5:22192318-22192337 None:intergenic 20.0%
!! TATTATCAATCTTTCAACAT+TGG + Chr5:22192347-22192366 None:intergenic 20.0%
!! TCAACATTGGATTAATTATA+TGG + Chr5:22192334-22192353 None:intergenic 20.0%
!! TTTAACTGCTTAAAAATGTA+GGG - Chr5:22190535-22190554 MsG0580025663.01.T01:intron 20.0%
!!! AAATAAAGTCAATTTAGGTT+TGG + Chr5:22192415-22192434 None:intergenic 20.0%
!!! AATCTTGTTAATTTAGCTTT+TGG - Chr5:22190297-22190316 MsG0580025663.01.T01:intron 20.0%
!!! AATTTTTATTTGATAAGGTG+TGG - Chr5:22190073-22190092 MsG0580025663.01.T01:CDS 20.0%
!!! AGGAGTCAAAATATATTTTT+TGG + Chr5:22193565-22193584 None:intergenic 20.0%
!!! GTACAGACAAAATTTAATTT+AGG - Chr5:22192759-22192778 MsG0580025663.01.T01:intron 20.0%
!!! GTATTAATTTTCATGTGTTT+TGG - Chr5:22191507-22191526 MsG0580025663.01.T01:intron 20.0%
!!! TAATAACAAAAGTTGGTTTT+TGG + Chr5:22194030-22194049 None:intergenic 20.0%
!!! TCAAAATATATTTTTTGGCT+CGG + Chr5:22193560-22193579 None:intergenic 20.0%
!!! TTATTTCCACTGTTTTAAAT+TGG - Chr5:22191363-22191382 MsG0580025663.01.T01:intron 20.0%
!!! TTGTAATTATAAGCTTTTTG+AGG - Chr5:22190123-22190142 MsG0580025663.01.T01:intron 20.0%
!!! TTTATTGAATTTTGTGTGTT+TGG - Chr5:22193267-22193286 MsG0580025663.01.T01:CDS 20.0%
!!! TTTATTTTTGTGTGTTTGAT+TGG - Chr5:22191944-22191963 MsG0580025663.01.T01:intron 20.0%
!!! TTTTAACTGCTTAAAAATGT+AGG - Chr5:22190534-22190553 MsG0580025663.01.T01:intron 20.0%
!!! TTTTAACTTCATAGAAATGA+GGG - Chr5:22190180-22190199 MsG0580025663.01.T01:intron 20.0%
!!! TTTTTAACTTCATAGAAATG+AGG - Chr5:22190179-22190198 MsG0580025663.01.T01:intron 20.0%
! AAATAGTCAAAAGACAAACA+CGG + Chr5:22191983-22192002 None:intergenic 25.0%
! AAATCATAAATGTTGCAAAC+TGG + Chr5:22193816-22193835 None:intergenic 25.0%
! AACAAGAAAAACAAGCAAAA+GGG + Chr5:22189998-22190017 None:intergenic 25.0%
! AGGTTAGTAATAACAAAAGT+TGG + Chr5:22194037-22194056 None:intergenic 25.0%
! ATAGCATCAATAAATGTATG+CGG - Chr5:22192260-22192279 MsG0580025663.01.T01:intron 25.0%
! ATGATACTACAGTTTATTGA+TGG - Chr5:22190971-22190990 MsG0580025663.01.T01:intron 25.0%
! CTGAAAGAGAAAAATGATAA+TGG - Chr5:22192685-22192704 MsG0580025663.01.T01:intron 25.0%
! TATAAAATATTCATGTGCTG+TGG - Chr5:22190243-22190262 MsG0580025663.01.T01:intron 25.0%
! TATTATATTCATGTGTTTGG+TGG - Chr5:22193004-22193023 MsG0580025663.01.T01:intron 25.0%
! TCAGATTAGGAATACTAAAA+GGG + Chr5:22190826-22190845 None:intergenic 25.0%
! TTCAATCTTTACCAAAACTA+GGG - Chr5:22189911-22189930 MsG0580025663.01.T01:intron 25.0%
!! AAATTGGTTTATATGTGACA+TGG - Chr5:22191187-22191206 MsG0580025663.01.T01:intron 25.0%
!! AATTAAGCTTTTGTAGCTTA+TGG - Chr5:22190483-22190502 MsG0580025663.01.T01:intron 25.0%
!! AGTTTTCCTTAGAAATGTAA+GGG - Chr5:22190601-22190620 MsG0580025663.01.T01:intron 25.0%
!! ATTAAGCTTTTGTAGCTTAT+GGG - Chr5:22190484-22190503 MsG0580025663.01.T01:intron 25.0%
!! ATTTGTATTTCCATGTTTTG+TGG - Chr5:22193146-22193165 MsG0580025663.01.T01:CDS 25.0%
!! CAATAAAGTGAATTTAGGTT+TGG + Chr5:22192474-22192493 None:intergenic 25.0%
!! GTTATTACTAACCTTTTTGT+CGG - Chr5:22194043-22194062 MsG0580025663.01.T01:intron 25.0%
!! TAAAGTGCTTAATGATACTT+CGG - Chr5:22193202-22193221 MsG0580025663.01.T01:CDS 25.0%
!! TACAAACCAATTTAAAACAG+TGG + Chr5:22191372-22191391 None:intergenic 25.0%
!! TACAAATCAATCTAAAACAG+TGG + Chr5:22193133-22193152 None:intergenic 25.0%
!! TTTGAATCTTGATGATACTT+CGG - Chr5:22191638-22191657 MsG0580025663.01.T01:intron 25.0%
!!! AAATGTCTGAGATTTTGAAT+AGG - Chr5:22192540-22192559 MsG0580025663.01.T01:intron 25.0%
!!! AGAAAAAACTGATTTGTAGA+GGG - Chr5:22192792-22192811 MsG0580025663.01.T01:intron 25.0%
!!! CAAAATATATTTTTTGGCTC+GGG + Chr5:22193559-22193578 None:intergenic 25.0%
!!! TTAATTTTCATGTGTTTTGG+TGG - Chr5:22191510-22191529 MsG0580025663.01.T01:intron 25.0%
!!! TTTGCGTTTTATGTTATTTC+AGG - Chr5:22190575-22190594 MsG0580025663.01.T01:intron 25.0%
AAATGGATACAATGAAACTG+TGG - Chr5:22190709-22190728 MsG0580025663.01.T01:intron 30.0%
AAGAATATCAAACGAACACA+GGG + Chr5:22193619-22193638 None:intergenic 30.0%
AATAAAATGTAGAGTTGCTC+AGG + Chr5:22193253-22193272 None:intergenic 30.0%
AATAGTCAAAAGACAAACAC+GGG + Chr5:22191982-22192001 None:intergenic 30.0%
ACATAACATACAATCACTAC+AGG + Chr5:22192227-22192246 None:intergenic 30.0%
ATAAGAATGAACCGACAAAA+AGG + Chr5:22194057-22194076 None:intergenic 30.0%
ATACCTTGAAAAGCAAGTAA+CGG + Chr5:22194137-22194156 None:intergenic 30.0%
CAAATACCATAACCAACATT+AGG + Chr5:22194163-22194182 None:intergenic 30.0%
CAACAAGAAAAACAAGCAAA+AGG + Chr5:22189999-22190018 None:intergenic 30.0%
CATAACATACAATCACTACA+GGG + Chr5:22192226-22192245 None:intergenic 30.0%
CCAATACTTTCAAGGAAAAA+TGG + Chr5:22192158-22192177 None:intergenic 30.0%
CTCAGATTAGGAATACTAAA+AGG + Chr5:22190827-22190846 None:intergenic 30.0%
CTTCAATCTTTACCAAAACT+AGG - Chr5:22189910-22189929 MsG0580025663.01.T01:intron 30.0%
GATGAAACTCAGTTTATTGA+TGG - Chr5:22191412-22191431 MsG0580025663.01.T01:intron 30.0%
GATGATACTCAGTTTATTGA+TGG - Chr5:22192037-22192056 MsG0580025663.01.T01:intron 30.0%
GTTGAAATTTGAATTGGTAG+CGG + Chr5:22192312-22192331 None:intergenic 30.0%
TACATATACTGCATAGTACA+GGG + Chr5:22191126-22191145 None:intergenic 30.0%
TAGAATGCTTTGTGATACTT+CGG - Chr5:22191000-22191019 MsG0580025663.01.T01:intron 30.0%
TAGATTGCTTGATGAAACTT+CGG - Chr5:22193396-22193415 MsG0580025663.01.T01:intron 30.0%
TGTATAGCAGTTAACTAAAC+AGG + Chr5:22193750-22193769 None:intergenic 30.0%
TGTTTGTAGTTATGACTAGT+TGG - Chr5:22191083-22191102 MsG0580025663.01.T01:intron 30.0%
TTAGGAATACTAAAAGGGAA+AGG + Chr5:22190821-22190840 None:intergenic 30.0%
TTAGTTATGACATGTTAGTG+TGG - Chr5:22191735-22191754 MsG0580025663.01.T01:intron 30.0%
TTCAAAATCTCAGACATTTG+CGG + Chr5:22192539-22192558 None:intergenic 30.0%
TTCATCACAGCAAAACAAAA+TGG + Chr5:22191832-22191851 None:intergenic 30.0%
TTCATCATAGCAACAAAACA+TGG + Chr5:22192911-22192930 None:intergenic 30.0%
TTGTTCAATGAAAAACGTGA+TGG - Chr5:22190662-22190681 MsG0580025663.01.T01:intron 30.0%
TTTCATGTGTTTGTGTATTC+AGG - Chr5:22193082-22193101 MsG0580025663.01.T01:intron 30.0%
! AAGAATGAAAACCCTAGTTT+TGG + Chr5:22189925-22189944 None:intergenic 30.0%
! ACTTTAGAGGCTGATAAAAA+TGG - Chr5:22190692-22190711 MsG0580025663.01.T01:intron 30.0%
! AGATTTTGAATAGGAAGACA+TGG - Chr5:22192549-22192568 MsG0580025663.01.T01:intron 30.0%
! ATTGAATTTTGTGTGTTTGG+TGG - Chr5:22193270-22193289 MsG0580025663.01.T01:CDS 30.0%
! CAGTTTTCCTTAGAAATGTA+AGG - Chr5:22190600-22190619 MsG0580025663.01.T01:intron 30.0%
! GATTTTGAATAGGAAGACAT+GGG - Chr5:22192550-22192569 MsG0580025663.01.T01:intron 30.0%
! TACAAACCAATCTAAAACAG+TGG + Chr5:22193326-22193345 None:intergenic 30.0%
! TGGTATATGATAGAGCATTA+TGG - Chr5:22192581-22192600 MsG0580025663.01.T01:intron 30.0%
!! CAGAAAAAACTGATTTGTAG+AGG - Chr5:22192791-22192810 MsG0580025663.01.T01:intron 30.0%
!! CCATTTTTCCTTGAAAGTAT+TGG - Chr5:22192155-22192174 MsG0580025663.01.T01:intron 30.0%
!! CTTTTGCTTGTTTTTCTTGT+TGG - Chr5:22189997-22190016 MsG0580025663.01.T01:CDS 30.0%
!! TCATTTTTCTCTTTCAGCTT+CGG + Chr5:22192682-22192701 None:intergenic 30.0%
!! TTGTTTCATTTTTGCGCTTT+TGG - Chr5:22193458-22193477 MsG0580025663.01.T01:intron 30.0%
!!! AATTTAGCTTTTGGAGCAAT+GGG - Chr5:22190306-22190325 MsG0580025663.01.T01:intron 30.0%
!!! GATGAAACTCAGTTTTTTGA+CGG - Chr5:22191609-22191628 MsG0580025663.01.T01:intron 30.0%
!!! GATTTGTAGAGGGTTTTTTT+TGG - Chr5:22192802-22192821 MsG0580025663.01.T01:intron 30.0%
!!! TAATTTAGCTTTTGGAGCAA+TGG - Chr5:22190305-22190324 MsG0580025663.01.T01:intron 30.0%
!!! TTTTTCCTTGAAAGTATTGG+TGG - Chr5:22192158-22192177 MsG0580025663.01.T01:intron 30.0%
AAAATTCATGTGCAATGGTG+TGG - Chr5:22190427-22190446 MsG0580025663.01.T01:intron 35.0%
AACTTCATAGAAATGAGGGA+AGG - Chr5:22190184-22190203 MsG0580025663.01.T01:intron 35.0%
AATACAATGTAGAGTTGCTC+AGG + Chr5:22191492-22191511 None:intergenic 35.0%
AATCACTACTGCTAAGTTGT+CGG - Chr5:22192506-22192525 MsG0580025663.01.T01:intron 35.0%
AGAATCAATAGCACCAACAA+CGG + Chr5:22193962-22193981 None:intergenic 35.0%
ATATACACGCTACTCAGATT+AGG + Chr5:22190839-22190858 None:intergenic 35.0%
ATCATCATAGCAACACAACA+TGG + Chr5:22192023-22192042 None:intergenic 35.0%
ATCATCATAGCAACTCAACA+TGG + Chr5:22190956-22190975 None:intergenic 35.0%
ATGAAACAATGTAGTTGCTC+AGG + Chr5:22193447-22193466 None:intergenic 35.0%
ATGCAGTATATGTAGGTGAT+TGG - Chr5:22191132-22191151 MsG0580025663.01.T01:intron 35.0%
ATGCTATCTGTCTCAAACTT+TGG - Chr5:22193592-22193611 MsG0580025663.01.T01:intron 35.0%
CATAACCACCAATACTTTCA+AGG + Chr5:22192166-22192185 None:intergenic 35.0%
CTACATATACTGCATAGTAC+AGG + Chr5:22191127-22191146 None:intergenic 35.0%
CTGTACTATGCAGTATATGT+AGG - Chr5:22191125-22191144 MsG0580025663.01.T01:intron 35.0%
GAAGAATATCAAACGAACAC+AGG + Chr5:22193620-22193639 None:intergenic 35.0%
GATGAAACTCAGTGTATTGA+TGG - Chr5:22193367-22193386 MsG0580025663.01.T01:CDS 35.0%
GATGAAACTCAGTTTCTTGA+CGG - Chr5:22193173-22193192 MsG0580025663.01.T01:CDS 35.0%
TAATCAATGAAGAGTTGCTC+AGG + Chr5:22192117-22192136 None:intergenic 35.0%
TAGGGCTTGGATATTCATTA+TGG - Chr5:22194104-22194123 MsG0580025663.01.T01:CDS 35.0%
TTCATCATAGCCACAAAACA+TGG + Chr5:22193159-22193178 None:intergenic 35.0%
! TAGAGTGCTTGATGATACTT+CGG - Chr5:22192066-22192085 MsG0580025663.01.T01:intron 35.0%
! TATGTGCCTAATGTTGGTTA+TGG - Chr5:22194154-22194173 MsG0580025663.01.T01:CDS 35.0%
! TGATGGTGTGATAACTTTAG+AGG - Chr5:22190679-22190698 MsG0580025663.01.T01:intron 35.0%
! TTGAGTGCTTGATGATACTT+CGG - Chr5:22191441-22191460 MsG0580025663.01.T01:intron 35.0%
!! GTCTTTCCACTGTTTTAGAT+TGG - Chr5:22193317-22193336 MsG0580025663.01.T01:CDS 35.0%
!! GTCTTTTGACTGTTTTGCAT+TGG - Chr5:22191560-22191579 MsG0580025663.01.T01:intron 35.0%
!! TTACCGTTACTTGCTTTTCA+AGG - Chr5:22194131-22194150 MsG0580025663.01.T01:CDS 35.0%
!!! ATATATTTTTTGGCTCGGGA+AGG + Chr5:22193555-22193574 None:intergenic 35.0%
!!! TATAAGCTTTTTGAGGCGAT+GGG - Chr5:22190130-22190149 MsG0580025663.01.T01:intron 35.0%
!!! TTATAAGCTTTTTGAGGCGA+TGG - Chr5:22190129-22190148 MsG0580025663.01.T01:intron 35.0%
AACTGCTATACAGTGCACTT+TGG - Chr5:22193758-22193777 MsG0580025663.01.T01:intron 40.0%
AATATTCATGTGCTGTGGTG+TGG - Chr5:22190248-22190267 MsG0580025663.01.T01:intron 40.0%
ACACACAATACACACACGAA+AGG + Chr5:22191310-22191329 None:intergenic 40.0%
ACATACAATCACTACAGGGA+AGG + Chr5:22192222-22192241 None:intergenic 40.0%
ACCATAAACAGCAAGAGAAG+TGG + Chr5:22193905-22193924 None:intergenic 40.0%
AGCTTATCGAGCAAATCCAA+CGG + Chr5:22190779-22190798 None:intergenic 40.0%
ATGGTGAAAAGCGAAGGAAT+TGG + Chr5:22189845-22189864 None:intergenic 40.0%
CAATGAAACTGTGGAGAATG+AGG - Chr5:22190718-22190737 MsG0580025663.01.T01:intron 40.0%
CACTATCACTGTCACTAACA+TGG + Chr5:22190896-22190915 None:intergenic 40.0%
CCAAACTGTTCGAAGTTGTA+GGG - Chr5:22194086-22194105 MsG0580025663.01.T01:CDS 40.0%
CCTACAACTTCGAACAGTTT+GGG + Chr5:22194088-22194107 None:intergenic 40.0%
CTGTTGCCCTTACATTTCTA+AGG + Chr5:22190610-22190629 None:intergenic 40.0%
GCATTATGGAGTCGTTTGTT+AGG - Chr5:22192595-22192614 MsG0580025663.01.T01:intron 40.0%
GGAAGACATGGGTAGAAATA+TGG - Chr5:22192561-22192580 MsG0580025663.01.T01:intron 40.0%
TCAAGGTATGTGCCTAATGT+TGG - Chr5:22194148-22194167 MsG0580025663.01.T01:CDS 40.0%
TCATCATAGCGAACACAACA+TGG + Chr5:22193352-22193371 None:intergenic 40.0%
TCGTGTGTGTATTGTGTGTT+TGG - Chr5:22191311-22191330 MsG0580025663.01.T01:intron 40.0%
TGGTGAAAAGCGAAGGAATT+GGG + Chr5:22189844-22189863 None:intergenic 40.0%
TGTGTGTATTGTGTGTTTGG+TGG - Chr5:22191314-22191333 MsG0580025663.01.T01:intron 40.0%
TTCATCATAGCAACACAGCA+TGG + Chr5:22191595-22191614 None:intergenic 40.0%
TTCATCATAGCAACACGACA+TGG + Chr5:22191398-22191417 None:intergenic 40.0%
! CGAGATAAGAGTGCATGTTT+CGG + Chr5:22189884-22189903 None:intergenic 40.0%
! CGTGTATATGATGATGCATG+TGG - Chr5:22190850-22190869 MsG0580025663.01.T01:intron 40.0%
!! ACCACTTCTCTTGCTGTTTA+TGG - Chr5:22193901-22193920 MsG0580025663.01.T01:intron 40.0%
!! ACTGAGCATGATTTGCTATG+TGG - Chr5:22192712-22192731 MsG0580025663.01.T01:intron 40.0%
!! ACTTCTCTTGCTGTTTATGG+TGG - Chr5:22193904-22193923 MsG0580025663.01.T01:intron 40.0%
!! GAAATTTGAATTGGTAGCGG+TGG + Chr5:22192309-22192328 None:intergenic 40.0%
!! TGCTATTGATTCTATCCCAG+TGG - Chr5:22193969-22193988 MsG0580025663.01.T01:intron 40.0%
AGACAGATAGCATGAGAAGC+AGG + Chr5:22193585-22193604 None:intergenic 45.0%
AGCGAAGGAATTGGGAAGTT+TGG + Chr5:22189836-22189855 None:intergenic 45.0%
CATCAGGCAACACTTCCTTT+GGG + Chr5:22190745-22190764 None:intergenic 45.0%
CATGTTTCGGAGAGGAAAGA+GGG + Chr5:22189871-22189890 None:intergenic 45.0%
CCCAAACTGTTCGAAGTTGT+AGG - Chr5:22194085-22194104 MsG0580025663.01.T01:CDS 45.0%
CCCTACAACTTCGAACAGTT+TGG + Chr5:22194089-22194108 None:intergenic 45.0%
CTGAACCTTCTCTCTACAAG+CGG + Chr5:22191234-22191253 None:intergenic 45.0%
CTTCGAACAGTTTGGGAATC+TGG + Chr5:22194081-22194100 None:intergenic 45.0%
GCATTCATGTCGAATCTGAG+CGG - Chr5:22192088-22192107 MsG0580025663.01.T01:intron 45.0%
GGAAGTTTGGAAAGAGTGAG+AGG + Chr5:22189823-22189842 None:intergenic 45.0%
GGAGACAATATTCTGTGGAG+AGG + Chr5:22192288-22192307 None:intergenic 45.0%
GGGTTTATGGTGAAAAGCGA+AGG + Chr5:22189851-22189870 None:intergenic 45.0%
TACACACACGAAAGGTAACG+AGG + Chr5:22191302-22191321 None:intergenic 45.0%
! TAAGAGTGCATGTTTCGGAG+AGG + Chr5:22189879-22189898 None:intergenic 45.0%
! TGGAGTCGTTTGTTAGGACA+AGG - Chr5:22192601-22192620 MsG0580025663.01.T01:intron 45.0%
!! GTTTGGTGGATTGATGAGCA+TGG - Chr5:22193284-22193303 MsG0580025663.01.T01:CDS 45.0%
!! TCTCTTGCTGTTTATGGTGG+TGG - Chr5:22193907-22193926 MsG0580025663.01.T01:intron 45.0%
!!! AAAATAATTTTTATTTGATA+AGG - Chr5:22190068-22190087 MsG0580025663.01.T01:CDS 5.0%
AACGGCCGAAGTTAACCACA+GGG + Chr5:22193944-22193963 None:intergenic 50.0%
AGCACCGCTTGAATTCTCCT+CGG + Chr5:22190636-22190655 None:intergenic 50.0%
AGTGGCCCTGTGGTTAACTT+CGG - Chr5:22193936-22193955 MsG0580025663.01.T01:intron 50.0%
AGTTAACCACAGGGCCACTA+TGG + Chr5:22193935-22193954 None:intergenic 50.0%
AGTTGCTCAGTTAACCGCTC+AGG + Chr5:22191039-22191058 None:intergenic 50.0%
CCATCAGGCAACACTTCCTT+TGG + Chr5:22190746-22190765 None:intergenic 50.0%
CGGAGAGGAAAGAGGGTTTA+TGG + Chr5:22189864-22189883 None:intergenic 50.0%
CTGTTCGAAGTTGTAGGGCT+TGG - Chr5:22194091-22194110 MsG0580025663.01.T01:CDS 50.0%
GCATCCGAGGAGAATTCAAG+CGG - Chr5:22190629-22190648 MsG0580025663.01.T01:intron 50.0%
GCATGTTTCGGAGAGGAAAG+AGG + Chr5:22189872-22189891 None:intergenic 50.0%
GCATTCATGTCGAACCTGAG+CGG - Chr5:22191463-22191482 MsG0580025663.01.T01:intron 50.0%
GCATTCATGTCGTACCTGAG+CGG - Chr5:22193418-22193437 MsG0580025663.01.T01:intron 50.0%
GCATTTGTGTCGAACCTGAG+CGG - Chr5:22191660-22191679 MsG0580025663.01.T01:intron 50.0%
GCGGTGGAGACAATATTCTG+TGG + Chr5:22192293-22192312 None:intergenic 50.0%
TATCGAGCAAATCCAACGGC+AGG + Chr5:22190775-22190794 None:intergenic 50.0%
TCTAGCCGCTTGTAGAGAGA+AGG - Chr5:22191226-22191245 MsG0580025663.01.T01:intron 50.0%
TGGTTAACTTCGGCCGTTGT+TGG - Chr5:22193946-22193965 MsG0580025663.01.T01:intron 50.0%
TGTGGAGAATGAGGACCCAA+AGG - Chr5:22190727-22190746 MsG0580025663.01.T01:intron 50.0%
!! CCAAAGGAAGTGTTGCCTGA+TGG - Chr5:22190743-22190762 MsG0580025663.01.T01:intron 50.0%
!! GAAGTGTTGCCTGATGGAGA+AGG - Chr5:22190749-22190768 MsG0580025663.01.T01:intron 50.0%
!! TTATGGTGGTGGTGCCATAG+TGG - Chr5:22193918-22193937 MsG0580025663.01.T01:intron 50.0%
AGTTGCTCAGCTAACCGCTC+AGG + Chr5:22191677-22191696 None:intergenic 55.0%
AGTTGCTCAGGTAACCGCTC+AGG + Chr5:22191480-22191499 None:intergenic 55.0%
CAACGGCCGAAGTTAACCAC+AGG + Chr5:22193945-22193964 None:intergenic 55.0%
GAGGAGAATTCAAGCGGTGC+TGG - Chr5:22190635-22190654 MsG0580025663.01.T01:intron 55.0%
TGTAAGGGCAACAGCATCCG+AGG - Chr5:22190616-22190635 MsG0580025663.01.T01:intron 55.0%
AACGGCAGGCCTTCTCCATC+AGG + Chr5:22190761-22190780 None:intergenic 60.0%
GCACTCGTGTCGAACCTGAG+CGG - Chr5:22191022-22191041 MsG0580025663.01.T01:intron 60.0%
TGATGGAGAAGGCCTGCCGT+TGG - Chr5:22190760-22190779 MsG0580025663.01.T01:intron 60.0%
!! GTGGTGCCATAGTGGCCCTG+TGG - Chr5:22193926-22193945 MsG0580025663.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 22189799 22194186 22189799 ID=MsG0580025663.01;Name=MsG0580025663.01
Chr5 mRNA 22189799 22194186 22189799 ID=MsG0580025663.01.T01;Parent=MsG0580025663.01;Name=MsG0580025663.01.T01;_AED=0.45;_eAED=0.58;_QI=0|0.25|0.2|1|0.25|0.4|5|0|226
Chr5 exon 22194053 22194186 22194053 ID=MsG0580025663.01.T01:exon:23883;Parent=MsG0580025663.01.T01
Chr5 exon 22193834 22193895 22193834 ID=MsG0580025663.01.T01:exon:23882;Parent=MsG0580025663.01.T01
Chr5 exon 22193114 22193388 22193114 ID=MsG0580025663.01.T01:exon:23881;Parent=MsG0580025663.01.T01
Chr5 exon 22189995 22190099 22189995 ID=MsG0580025663.01.T01:exon:23880;Parent=MsG0580025663.01.T01
Chr5 exon 22189799 22189903 22189799 ID=MsG0580025663.01.T01:exon:23879;Parent=MsG0580025663.01.T01
Chr5 CDS 22194053 22194186 22194053 ID=MsG0580025663.01.T01:cds;Parent=MsG0580025663.01.T01
Chr5 CDS 22193834 22193895 22193834 ID=MsG0580025663.01.T01:cds;Parent=MsG0580025663.01.T01
Chr5 CDS 22193114 22193388 22193114 ID=MsG0580025663.01.T01:cds;Parent=MsG0580025663.01.T01
Chr5 CDS 22189995 22190099 22189995 ID=MsG0580025663.01.T01:cds;Parent=MsG0580025663.01.T01
Chr5 CDS 22189799 22189903 22189799 ID=MsG0580025663.01.T01:cds;Parent=MsG0580025663.01.T01
Gene Sequence

>MsG0580025663.01.T01

ATGGGGCATTGTACAGTTCAGCCTCTCACTCTTTCCAAACTTCCCAATTCCTTCGCTTTTCACCATAAACCCTCTTTCCTCTCCGAAACATGCACTCTTATCTCGTTAGTTCTTCAATCTTTACCAAAACTAGGGTGTGGAAAATTTGATGCAAACTTTGAATTTTCTTGTAATTATAAGCTTTTTGAGGCGATGGGCTCAGTTTTCCTTAGAAATGTAAGGGCAACAGCATCCGAGGAGAATTCAAGCGGTGCTGGTAAATTGTTCAATGAAAAACGTGATGGTGTGATAACTTTAGAGGCTGATAAAAATGGATACAATGAAACTGTGGAGAATGAGGACCCAAAGGAAGTGTTGCCTGATGGAGAAGGCCTGCCGTTGGATTTGCTCGATAAGCTTAATGTAAGAGTTGCTATGCCTTTCCCTTTTAGTATTCCTAATCTGAGTAGCGTGTATATGATGATGCATGTGTTTGACATAAATGACACCACTTCTCTTGCTGTTTATGGTGGTGGTGCCATAGTGGCCCTGTGGTTAACTTCGGCCGTTGTTGGTGCTATTGATTCTATCCCAGTGATTCCCAAACTGTTCGAAGTTGTAGGGCTTGGATATTCATTATGGTCACTTACCGTTACTTGCTTTTCAAGGTATGTGCCTAATGTTGGTTATGGTATTTGCTGA

Protein sequence

>MsG0580025663.01.T01

MGHCTVQPLTLSKLPNSFAFHHKPSFLSETCTLISLVLQSLPKLGCGKFDANFEFSCNYKLFEAMGSVFLRNVRATASEENSSGAGKLFNEKRDGVITLEADKNGYNETVENEDPKEVLPDGEGLPLDLLDKLNVRVAMPFPFSIPNLSSVYMMMHVFDINDTTSLAVYGGGAIVALWLTSAVVGAIDSIPVIPKLFEVVGLGYSLWSLTVTCFSRYVPNVGYGIC*