AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120310 MtrunA17_Chr1g0178601 96.629 267 9 0 1 267 1 267 0.0 537
Msa0120310 MtrunA17_Chr1g0178591 84.962 266 40 0 1 266 1 266 3.53e-171 473
Msa0120310 MtrunA17_Chr1g0178541 84.672 137 21 0 130 266 44 180 5.72e-83 246
Msa0120310 MtrunA17_Chr4g0028741 39.852 271 150 7 2 265 6 270 2.46e-62 197
Msa0120310 MtrunA17_Chr1g0180371 41.810 232 126 3 35 263 48 273 2.99e-60 192
Msa0120310 MtrunA17_Chr1g0180331 36.122 263 158 4 9 266 19 276 2.35e-59 190
Msa0120310 MtrunA17_Chr7g0257091 38.433 268 145 5 10 267 8 265 2.85e-56 181
Msa0120310 MtrunA17_Chr7g0264911 43.721 215 110 4 55 264 2 210 3.95e-56 179
Msa0120310 MtrunA17_Chr4g0028711 38.136 236 140 2 27 262 37 266 1.52e-52 172
Msa0120310 MtrunA17_Chr4g0028721 35.556 225 139 2 17 241 1 219 2.28e-45 152
Msa0120310 MtrunA17_Chr1g0178561 88.889 63 7 0 67 129 1 63 6.09e-36 122
Msa0120310 MtrunA17_Chr4g0028731 36.000 150 95 1 17 166 1 149 1.88e-25 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120310 AT3G52720.3 44.275 262 143 2 6 267 11 269 4.44e-84 253
Msa0120310 AT3G52720.4 44.275 262 143 2 6 267 11 269 4.44e-84 253
Msa0120310 AT3G52720.1 44.275 262 143 2 6 267 11 269 4.44e-84 253
Msa0120310 AT3G52720.2 42.534 221 124 2 6 226 11 228 4.42e-64 200
Msa0120310 AT2G28210.1 38.806 268 149 6 5 263 10 271 1.10e-61 196
Msa0120310 AT1G08080.1 39.662 237 137 2 27 263 41 271 1.88e-60 192
Msa0120310 AT4G20990.1 37.391 230 134 4 35 264 45 264 6.86e-54 176
Msa0120310 AT5G04180.1 38.911 257 142 7 9 258 5 253 3.14e-53 174
Msa0120310 AT1G08065.1 35.472 265 157 4 7 263 10 268 1.15e-52 172
Msa0120310 AT4G21000.1 37.824 193 110 4 34 226 45 227 2.49e-42 145
Msa0120310 AT5G56330.1 32.377 244 116 5 24 263 136 334 8.08e-34 125
Msa0120310 AT5G56330.2 38.462 169 95 4 24 184 136 303 3.73e-30 115
Msa0120310 AT2G28210.2 39.850 133 71 4 5 128 10 142 3.75e-24 95.5

Find 91 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTAAGGGTTTCAATTCT+TGG 0.170815 1_3:+44979267 None:intergenic
AAACGTGCCAAGGGCAATTT+TGG 0.183202 1_3:+44977647 None:intergenic
TATTGCAGCCCTCTACAATT+TGG 0.195816 1_3:-44977963 Msa0120310:CDS
GTGGGAGATATTAATATAAA+TGG 0.232737 1_3:-44978892 Msa0120310:CDS
CTCCAATATTATGGTTAGTT+TGG 0.247734 1_3:+44979737 None:intergenic
AGGATGGTAGTTTCTGTCTA+AGG 0.282486 1_3:+44979253 None:intergenic
ATTGAGAGTTCTCTATTCTA+AGG 0.294436 1_3:-44977081 Msa0120310:three_prime_UTR
GTCCAAACTAACCATAATAT+TGG 0.304156 1_3:-44979739 Msa0120310:five_prime_UTR
TTAACAAGTGTAGCATTTGT+AGG 0.319349 1_3:+44979233 None:intergenic
GGATGGTGGATGAATTTGTT+GGG 0.326789 1_3:+44979785 None:intergenic
CCCCACTTCTCAGGACCATT+TGG 0.327367 1_3:+44979374 None:intergenic
TTAACAACCAATTCAACATT+GGG 0.341353 1_3:-44979214 Msa0120310:CDS
ATGTAGAGGAAATAAATAAA+AGG 0.341861 1_3:-44977623 Msa0120310:CDS
TACATACCCCAATGTTGAAT+TGG 0.343928 1_3:+44979207 None:intergenic
AATTCTTCTTATTGCAACTT+TGG 0.348144 1_3:-44979583 Msa0120310:CDS
CAACATATCTATAATATCTA+TGG 0.348697 1_3:+44977598 None:intergenic
GAATCCCATGTCTCTATTTG+TGG 0.358258 1_3:+44977220 None:intergenic
TGTGTTCTTCTCCAATATTA+TGG 0.361637 1_3:+44979728 None:intergenic
ATTCATTGAAACAACTTCAT+TGG 0.362363 1_3:-44978861 Msa0120310:CDS
TAATCATATCACTCAAATTA+TGG 0.363011 1_3:-44976993 Msa0120310:three_prime_UTR
TAGATAATAGCTATTCAAAA+TGG 0.372426 1_3:-44979625 Msa0120310:exon
ATTGCAGCCCTCTACAATTT+GGG 0.374926 1_3:-44977962 Msa0120310:CDS
CATGCAAAGAAGGTGTCATT+TGG 0.384098 1_3:-44977557 Msa0120310:CDS
TCGTTTGCAGCATGCTCAAA+TGG 0.388881 1_3:-44979338 Msa0120310:CDS
AACTCTACCTTGGAGATTAG+AGG 0.392300 1_3:+44977929 None:intergenic
GGCATGCTCCTGCAGAGCAC+CGG 0.395484 1_3:-44978840 Msa0120310:CDS
CCATGAGCCCGGTGCTCTGC+AGG 0.396230 1_3:+44978832 None:intergenic
CTCAGGGTTCCCCACTTCTC+AGG 0.400725 1_3:+44979365 None:intergenic
TTTGAGGATATGCTCAACTT+TGG 0.407354 1_3:+44979764 None:intergenic
TTTAGTTATATTGGACCAAA+TGG 0.408021 1_3:-44979389 Msa0120310:CDS
TGGATGGTGGATGAATTTGT+TGG 0.409350 1_3:+44979784 None:intergenic
CCTGCAGAGCACCGGGCTCA+TGG 0.434839 1_3:-44978832 Msa0120310:CDS
ACCTTGGAGATTAGAGGATC+AGG 0.444518 1_3:+44977935 None:intergenic
GGTGTCATTTGGAACATCAT+TGG 0.445336 1_3:-44977546 Msa0120310:CDS
GGATGGTAGTTTCTGTCTAA+GGG 0.452303 1_3:+44979254 None:intergenic
GTTAACAACCAATTCAACAT+TGG 0.453599 1_3:-44979215 Msa0120310:CDS
ATTGCCCACACGGTTCTCAT+TGG 0.457484 1_3:+44977677 None:intergenic
TATCTTCTGTGAGGTGAACT+AGG 0.462726 1_3:+44978002 None:intergenic
TTTATGATAAAACTAGGTAC+TGG 0.469055 1_3:-44977163 Msa0120310:three_prime_UTR
GCATGCTCCTGCAGAGCACC+GGG 0.482296 1_3:-44978839 Msa0120310:CDS
GAGCATTTACAGATTCTGTT+GGG 0.485401 1_3:+44979874 None:intergenic
CCTTGGCACGTTTGATGTAG+AGG 0.490692 1_3:-44977637 Msa0120310:CDS
CAAATGACACCTTCTTTGCA+TGG 0.493029 1_3:+44977558 None:intergenic
CATAGATATTATAGATATGT+TGG 0.494664 1_3:-44977597 Msa0120310:CDS
CGTTTGCAGCATGCTCAAAT+GGG 0.497742 1_3:-44979337 Msa0120310:CDS
ATGCTGCAAACGATGGACTC+AGG 0.504036 1_3:+44979348 None:intergenic
CGACCATTCAATGGCTGAAG+TGG 0.505749 1_3:+44977264 None:intergenic
TATTCTAAGGATGTTCTACT+AGG 0.517315 1_3:-44977068 Msa0120310:three_prime_UTR
CAGAATCTGTAAATGCTCCT+TGG 0.519008 1_3:-44979869 Msa0120310:five_prime_UTR
TCATTCATTACAAGTTCCAC+TGG 0.530814 1_3:+44979302 None:intergenic
GGAGCATTTACAGATTCTGT+TGG 0.531273 1_3:+44979873 None:intergenic
GATGGTGGATGAATTTGTTG+GGG 0.531971 1_3:+44979786 None:intergenic
AGGCCACTTCAGCCATTGAA+TGG 0.533333 1_3:-44977267 Msa0120310:CDS
ACTACCCCTCCATGCAAAGA+AGG 0.533789 1_3:-44977567 Msa0120310:CDS
CCTCTACATCAAACGTGCCA+AGG 0.536082 1_3:+44977637 None:intergenic
CAAGTGTAGCATTTGTAGGA+TGG 0.539412 1_3:+44979237 None:intergenic
AGGATATGCTCAACTTTGGA+TGG 0.539841 1_3:+44979768 None:intergenic
CTTACAAACGACCATGAGCC+CGG 0.541180 1_3:+44978821 None:intergenic
ACCAAATGGTCCTGAGAAGT+GGG 0.541655 1_3:-44979375 Msa0120310:CDS
GACCAAATGGTCCTGAGAAG+TGG 0.543240 1_3:-44979376 Msa0120310:CDS
TGACACCTTCTTTGCATGGA+GGG 0.546979 1_3:+44977562 None:intergenic
TTCCAAATATAGACATGAAG+CGG 0.555396 1_3:-44978032 Msa0120310:intron
ATAGGAAAAGTATGCTGCCA+AGG 0.556649 1_3:+44979852 None:intergenic
AAAGATGCCAAAATTGCCCT+TGG 0.561911 1_3:-44977654 Msa0120310:CDS
TTTAGAGGGATACTAACATC+AGG 0.569976 1_3:+44977131 None:intergenic
TGCTGCAAACGATGGACTCA+GGG 0.573943 1_3:+44979349 None:intergenic
TTTGAGCATGCTGCAAACGA+TGG 0.579578 1_3:+44979341 None:intergenic
GACACCTTCTTTGCATGGAG+GGG 0.587126 1_3:+44977563 None:intergenic
TGGCATCTTTATTGCCCACA+CGG 0.595469 1_3:+44977667 None:intergenic
CTCTACATCAAACGTGCCAA+GGG 0.596044 1_3:+44977638 None:intergenic
TAGAGTTTCAGCACAATGCA+AGG 0.597697 1_3:-44977287 Msa0120310:CDS
TTATAGTACATATATAGTGA+TGG 0.601734 1_3:+44979694 None:intergenic
TCCTGATCCTCTAATCTCCA+AGG 0.601948 1_3:-44977936 Msa0120310:intron
TGTTATTGTTATCTTCTGTG+AGG 0.604430 1_3:+44977993 None:intergenic
AACTACCACAAATAGAGACA+TGG 0.605284 1_3:-44977225 Msa0120310:exon
CATATATAGTGATGGTTGTG+TGG 0.613750 1_3:+44979702 None:intergenic
TGCTGAAACTCTACACCCAA+TGG 0.613860 1_3:+44977297 None:intergenic
CAGGATCACCCAAATTGTAG+AGG 0.616295 1_3:+44977954 None:intergenic
CATTTGGAACATCATTGGCA+AGG 0.625922 1_3:-44977541 Msa0120310:intron
GGGGTTACTTACAAGATCAG+TGG 0.626201 1_3:+44979805 None:intergenic
AGGATCACCCAAATTGTAGA+GGG 0.637120 1_3:+44977955 None:intergenic
ACTACCACAAATAGAGACAT+GGG 0.637186 1_3:-44977224 Msa0120310:exon
TAACAACCAATTCAACATTG+GGG 0.644450 1_3:-44979213 Msa0120310:intron
ATATGCTCAACTTTGGATGG+TGG 0.647963 1_3:+44979771 None:intergenic
ATGACACCTTCTTTGCATGG+AGG 0.651112 1_3:+44977561 None:intergenic
ATATATGTACTATAAAGCAA+AGG 0.656040 1_3:-44979686 Msa0120310:five_prime_UTR
TGGGAAAGCACAAAGTCCAG+TGG 0.663928 1_3:-44979318 Msa0120310:CDS
CTAGCCAATGAGAACCGTGT+GGG 0.667899 1_3:-44977681 Msa0120310:CDS
CTTCTGTGAGGTGAACTAGG+TGG 0.676418 1_3:+44978005 None:intergenic
CCAAATGGTCCTGAGAAGTG+GGG 0.710021 1_3:-44979374 Msa0120310:CDS
GCTAGCCAATGAGAACCGTG+TGG 0.715730 1_3:-44977682 Msa0120310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATTATTATTATTAGT+CGG - chr1_3:44977622-44977641 Msa0120310:CDS 10.0%
!! ATTTAATATATATTAGTACA+AGG - chr1_3:44978514-44978533 Msa0120310:intron 10.0%
!! TAAATGTAGAATATATTATT+TGG - chr1_3:44978909-44978928 Msa0120310:CDS 10.0%
!!! ATTTTATTATATATCATATG+AGG + chr1_3:44979740-44979759 None:intergenic 10.0%
!!! TAATAGTATACTATTTTTTT+TGG + chr1_3:44979783-44979802 None:intergenic 10.0%
!! ATTTGAAAAGTAAAAATGAT+TGG + chr1_3:44977609-44977628 None:intergenic 15.0%
!!! AATTCTATAATGTTTTTTAG+TGG + chr1_3:44977947-44977966 None:intergenic 15.0%
!! AAAAATTTATAAGCATCATT+TGG + chr1_3:44978175-44978194 None:intergenic 15.0%
!! AGTTATATAAATAGTTTGAA+AGG + chr1_3:44978346-44978365 None:intergenic 15.0%
!!! TCAATTTTATAAAACCAATT+CGG + chr1_3:44979205-44979224 None:intergenic 15.0%
!!! AATATAAAGTAATTTGTGTT+TGG - chr1_3:44979244-44979263 Msa0120310:CDS 15.0%
!!! ATATAAAGTAATTTGTGTTT+GGG - chr1_3:44979245-44979264 Msa0120310:CDS 15.0%
!!! TTTGTATTAATTTTTGCTTT+TGG - chr1_3:44979279-44979298 Msa0120310:CDS 15.0%
!! TAAAAACTACATTTAATTCA+TGG + chr1_3:44979484-44979503 None:intergenic 15.0%
!!! ACAAATTTTATGATAAAACT+AGG - chr1_3:44979504-44979523 Msa0120310:intron 15.0%
!!! ATACTTTTCCTATATAGAAA+AGG - chr1_3:44976831-44976850 Msa0120310:three_prime_UTR 20.0%
!! TTATAGTACATATATAGTGA+TGG + chr1_3:44976982-44977001 None:intergenic 20.0%
!! ATATATGTACTATAAAGCAA+AGG - chr1_3:44976987-44977006 Msa0120310:three_prime_UTR 20.0%
!! TAGATAATAGCTATTCAAAA+TGG - chr1_3:44977048-44977067 Msa0120310:three_prime_UTR 20.0%
!!! AGTTTTTTTTATGCTAGATT+CGG - chr1_3:44977256-44977275 Msa0120310:CDS 20.0%
!!! TCGGTTAATTTTAGTTATAT+TGG - chr1_3:44977275-44977294 Msa0120310:CDS 20.0%
!!! CTTAAAAAGTGTAAAAATTG+TGG - chr1_3:44977511-44977530 Msa0120310:intron 20.0%
!! AAACAAAGTACACAATTATA+AGG - chr1_3:44977681-44977700 Msa0120310:CDS 20.0%
!!! AAAATATAGGTACATTTTGA+AGG - chr1_3:44977754-44977773 Msa0120310:intron 20.0%
!! TAATTCAACAGAATGTTTAA+AGG - chr1_3:44978284-44978303 Msa0120310:intron 20.0%
!! TTTATTCCTTTACAAAAATC+TGG + chr1_3:44978451-44978470 None:intergenic 20.0%
!! TAAATGTAGAATATACGATA+TGG + chr1_3:44978494-44978513 None:intergenic 20.0%
!! ATATATATTAGTACAAGGAA+TGG - chr1_3:44978519-44978538 Msa0120310:intron 20.0%
!! TATATATTAGTACAAGGAAT+GGG - chr1_3:44978520-44978539 Msa0120310:intron 20.0%
!!! GTTCAATAGATTTTTATTAG+AGG + chr1_3:44978578-44978597 None:intergenic 20.0%
!!! ACTAACATTGTAATTTGTAA+GGG + chr1_3:44978600-44978619 None:intergenic 20.0%
!!! AACTAACATTGTAATTTGTA+AGG + chr1_3:44978601-44978620 None:intergenic 20.0%
!! ATGTAGAGGAAATAAATAAA+AGG - chr1_3:44979050-44979069 Msa0120310:intron 20.0%
!! CAACATATCTATAATATCTA+TGG + chr1_3:44979078-44979097 None:intergenic 20.0%
!! CATAGATATTATAGATATGT+TGG - chr1_3:44979076-44979095 Msa0120310:intron 20.0%
!!! TAAAAGTTTTAGTTGTTCTT+TGG + chr1_3:44979350-44979369 None:intergenic 20.0%
!!! AGAACAACTAAAACTTTTAA+AGG - chr1_3:44979351-44979370 Msa0120310:CDS 20.0%
!!! CATTATTTTTTCAGTTTAGA+GGG + chr1_3:44979559-44979578 None:intergenic 20.0%
!!! ACATTATTTTTTCAGTTTAG+AGG + chr1_3:44979560-44979579 None:intergenic 20.0%
!! CTAAACTGAAAAAATAATGT+AGG - chr1_3:44979560-44979579 Msa0120310:CDS 20.0%
!! AAAAGAAAAAAAAAACAGAG+TGG + chr1_3:44979655-44979674 None:intergenic 20.0%
!! TAATCATATCACTCAAATTA+TGG - chr1_3:44979680-44979699 Msa0120310:five_prime_UTR 20.0%
!! AACAAAAAAAATGTAGCATT+TGG - chr1_3:44979875-44979894 Msa0120310:five_prime_UTR 20.0%
! AATTCTTCTTATTGCAACTT+TGG - chr1_3:44977090-44977109 Msa0120310:three_prime_UTR 25.0%
!! ATCAACTGCATCTATTATTT+TGG + chr1_3:44977194-44977213 None:intergenic 25.0%
! TTTAGTTATATTGGACCAAA+TGG - chr1_3:44977284-44977303 Msa0120310:CDS 25.0%
! TTAACAACCAATTCAACATT+GGG - chr1_3:44977459-44977478 Msa0120310:intron 25.0%
! AAGTACACAATTATAAGGTA+AGG - chr1_3:44977686-44977705 Msa0120310:CDS 25.0%
!!! GGTTGAGTTTGTTAAAATAT+AGG - chr1_3:44977741-44977760 Msa0120310:intron 25.0%
! GTGGGAGATATTAATATAAA+TGG - chr1_3:44977781-44977800 Msa0120310:intron 25.0%
! ATTCATTGAAACAACTTCAT+TGG - chr1_3:44977812-44977831 Msa0120310:intron 25.0%
!! CTTGATTTTGTGAATGTATT+GGG + chr1_3:44977907-44977926 None:intergenic 25.0%
! CAATACATTCACAAAATCAA+GGG - chr1_3:44977906-44977925 Msa0120310:intron 25.0%
! ACTATAATTTAAGTCAGAGA+GGG + chr1_3:44978022-44978041 None:intergenic 25.0%
! AACTATAATTTAAGTCAGAG+AGG + chr1_3:44978023-44978042 None:intergenic 25.0%
!! TTAGTTCCAGATTTTTGTAA+AGG - chr1_3:44978442-44978461 Msa0120310:intron 25.0%
!!! TAGATTTTTATTAGAGGTGT+AGG + chr1_3:44978572-44978591 None:intergenic 25.0%
! AACGTTCATATTTGATATCA+CGG - chr1_3:44978787-44978806 Msa0120310:intron 25.0%
! TTTATGATAAAACTAGGTAC+TGG - chr1_3:44979510-44979529 Msa0120310:intron 25.0%
! AATGCTGTCCTTTTCTATAT+AGG + chr1_3:44976842-44976861 None:intergenic 30.0%
GTCCAAACTAACCATAATAT+TGG - chr1_3:44976934-44976953 Msa0120310:three_prime_UTR 30.0%
! CTCCAATATTATGGTTAGTT+TGG + chr1_3:44976939-44976958 None:intergenic 30.0%
TGTGTTCTTCTCCAATATTA+TGG + chr1_3:44976948-44976967 None:intergenic 30.0%
TTAACAAGTGTAGCATTTGT+AGG + chr1_3:44977443-44977462 None:intergenic 30.0%
GTTAACAACCAATTCAACAT+TGG - chr1_3:44977458-44977477 Msa0120310:intron 30.0%
TAACAACCAATTCAACATTG+GGG - chr1_3:44977460-44977479 Msa0120310:intron 30.0%
GGTAGTATATAGTTATGATG+GGG + chr1_3:44977540-44977559 None:intergenic 30.0%
CGGTAGTATATAGTTATGAT+GGG + chr1_3:44977541-44977560 None:intergenic 30.0%
TCGGTAGTATATAGTTATGA+TGG + chr1_3:44977542-44977561 None:intergenic 30.0%
! ACATATTCGATTTGAAGTGT+CGG + chr1_3:44977561-44977580 None:intergenic 30.0%
ATTATAAGGTAAGGTTGTTG+AGG - chr1_3:44977695-44977714 Msa0120310:CDS 30.0%
AATTGTGATGTCAACTGATA+TGG - chr1_3:44977720-44977739 Msa0120310:intron 30.0%
!! GTACATTTTGAAGGTAAAGT+GGG - chr1_3:44977763-44977782 Msa0120310:intron 30.0%
! CCTTGATTTTGTGAATGTAT+TGG + chr1_3:44977908-44977927 None:intergenic 30.0%
CCAATACATTCACAAAATCA+AGG - chr1_3:44977905-44977924 Msa0120310:intron 30.0%
TGAGTTTCACAATAATGAAC+AGG + chr1_3:44978076-44978095 None:intergenic 30.0%
CAACAGAATGTTTAAAGGAT+AGG - chr1_3:44978289-44978308 Msa0120310:intron 30.0%
CCAGAATAAATCAGAATACA+TGG + chr1_3:44978549-44978568 None:intergenic 30.0%
CCATGTATTCTGATTTATTC+TGG - chr1_3:44978546-44978565 Msa0120310:intron 30.0%
TTCCAAATATAGACATGAAG+CGG - chr1_3:44978641-44978660 Msa0120310:intron 30.0%
TGTTATTGTTATCTTCTGTG+AGG + chr1_3:44978683-44978702 None:intergenic 30.0%
TGACTTAAATAACTCTACCT+TGG + chr1_3:44978757-44978776 None:intergenic 30.0%
GTATAGCTACTAATTACATG+TGG - chr1_3:44978935-44978954 Msa0120310:intron 30.0%
AGGTACTAAGTTTAATCAGT+TGG - chr1_3:44979152-44979171 Msa0120310:intron 30.0%
AGTTTAATCAGTTGGTTATG+CGG - chr1_3:44979160-44979179 Msa0120310:intron 30.0%
!! GAAATTGATTTTGACCGAAT+TGG - chr1_3:44979188-44979207 Msa0120310:intron 30.0%
!!! AAAACTTTTAAAGGCACCAT+TGG - chr1_3:44979360-44979379 Msa0120310:CDS 30.0%
!!! AAACTTTTAAAGGCACCATT+GGG - chr1_3:44979361-44979380 Msa0120310:CDS 30.0%
ATTGAGAGTTCTCTATTCTA+AGG - chr1_3:44979592-44979611 Msa0120310:CDS 30.0%
! TATTCTAAGGATGTTCTACT+AGG - chr1_3:44979605-44979624 Msa0120310:CDS 30.0%
GAGCATTTACAGATTCTGTT+GGG + chr1_3:44976802-44976821 None:intergenic 35.0%
TTTGAGGATATGCTCAACTT+TGG + chr1_3:44976912-44976931 None:intergenic 35.0%
!!! TGGTTAGTTTGGACATTTTG+AGG + chr1_3:44976928-44976947 None:intergenic 35.0%
CATATATAGTGATGGTTGTG+TGG + chr1_3:44976974-44976993 None:intergenic 35.0%
TCATTCATTACAAGTTCCAC+TGG + chr1_3:44977374-44977393 None:intergenic 35.0%
TGTCTAAGGGTTTCAATTCT+TGG + chr1_3:44977409-44977428 None:intergenic 35.0%
TACATACCCCAATGTTGAAT+TGG + chr1_3:44977469-44977488 None:intergenic 35.0%
! ATTATTATTAGTCGGTGCCT+AGG - chr1_3:44977630-44977649 Msa0120310:CDS 35.0%
!! GGTACATTTTGAAGGTAAAG+TGG - chr1_3:44977762-44977781 Msa0120310:intron 35.0%
TACATTCACAAAATCAAGGG+CGG - chr1_3:44977909-44977928 Msa0120310:intron 35.0%
!!! TGTTTTTTAGTGGCCATAAG+AGG + chr1_3:44977937-44977956 None:intergenic 35.0%
CAGAATGTTTAAAGGATAGG+AGG - chr1_3:44978292-44978311 Msa0120310:intron 35.0%
!! AGCTTGATAATGACAACTTG+AGG - chr1_3:44978374-44978393 Msa0120310:intron 35.0%
ATTTACCACGAATCCAAACA+AGG - chr1_3:44978852-44978871 Msa0120310:CDS 35.0%
TGAGTCATGTAATCCTTGTT+TGG + chr1_3:44978868-44978887 None:intergenic 35.0%
CAAGAGTCAAGACTATAAAG+TGG - chr1_3:44978886-44978905 Msa0120310:CDS 35.0%
TTCTTACTTAATGAGCATGC+AGG - chr1_3:44979312-44979331 Msa0120310:CDS 35.0%
! TCAATTTTGCGACCATTCAA+TGG + chr1_3:44979421-44979440 None:intergenic 35.0%
AACTACCACAAATAGAGACA+TGG - chr1_3:44979448-44979467 Msa0120310:intron 35.0%
ACTACCACAAATAGAGACAT+GGG - chr1_3:44979449-44979468 Msa0120310:intron 35.0%
TTTAGAGGGATACTAACATC+AGG + chr1_3:44979545-44979564 None:intergenic 35.0%
! TTCTACTAGGACACTTTTCT+AGG - chr1_3:44979618-44979637 Msa0120310:exon 35.0%
!!! AGGACACTTTTCTAGGATTT+TGG - chr1_3:44979625-44979644 Msa0120310:exon 35.0%
! GGAGCATTTACAGATTCTGT+TGG + chr1_3:44976803-44976822 None:intergenic 40.0%
CAGAATCTGTAAATGCTCCT+TGG - chr1_3:44976804-44976823 Msa0120310:three_prime_UTR 40.0%
! ATAGGAAAAGTATGCTGCCA+AGG + chr1_3:44976824-44976843 None:intergenic 40.0%
!! GATGGTGGATGAATTTGTTG+GGG + chr1_3:44976890-44976909 None:intergenic 40.0%
!! GGATGGTGGATGAATTTGTT+GGG + chr1_3:44976891-44976910 None:intergenic 40.0%
!! TGGATGGTGGATGAATTTGT+TGG + chr1_3:44976892-44976911 None:intergenic 40.0%
ATATGCTCAACTTTGGATGG+TGG + chr1_3:44976905-44976924 None:intergenic 40.0%
AGGATATGCTCAACTTTGGA+TGG + chr1_3:44976908-44976927 None:intergenic 40.0%
GGATGGTAGTTTCTGTCTAA+GGG + chr1_3:44977422-44977441 None:intergenic 40.0%
AGGATGGTAGTTTCTGTCTA+AGG + chr1_3:44977423-44977442 None:intergenic 40.0%
CAAGTGTAGCATTTGTAGGA+TGG + chr1_3:44977439-44977458 None:intergenic 40.0%
AGAAGAAGAGAGAGGGAAAA+GGG + chr1_3:44977879-44977898 None:intergenic 40.0%
AAGAAGAAGAGAGAGGGAAA+AGG + chr1_3:44977880-44977899 None:intergenic 40.0%
CTCCGCTTCATGTCTATATT+TGG + chr1_3:44978646-44978665 None:intergenic 40.0%
TATCTTCTGTGAGGTGAACT+AGG + chr1_3:44978674-44978693 None:intergenic 40.0%
TATTGCAGCCCTCTACAATT+TGG - chr1_3:44978710-44978729 Msa0120310:intron 40.0%
ATTGCAGCCCTCTACAATTT+GGG - chr1_3:44978711-44978730 Msa0120310:intron 40.0%
AGGATCACCCAAATTGTAGA+GGG + chr1_3:44978721-44978740 None:intergenic 40.0%
AACTCTACCTTGGAGATTAG+AGG + chr1_3:44978747-44978766 None:intergenic 40.0%
CGGTAAATTTGTCGAAGTCA+TGG - chr1_3:44978807-44978826 Msa0120310:intron 40.0%
! GTAATCCTTGTTTGGATTCG+TGG + chr1_3:44978860-44978879 None:intergenic 40.0%
AAAGATGCCAAAATTGCCCT+TGG - chr1_3:44979019-44979038 Msa0120310:intron 40.0%
CAAATGACACCTTCTTTGCA+TGG + chr1_3:44979118-44979137 None:intergenic 40.0%
!! CATGCAAAGAAGGTGTCATT+TGG - chr1_3:44979116-44979135 Msa0120310:intron 40.0%
!! GGTGTCATTTGGAACATCAT+TGG - chr1_3:44979127-44979146 Msa0120310:intron 40.0%
! CATTTGGAACATCATTGGCA+AGG - chr1_3:44979132-44979151 Msa0120310:intron 40.0%
ACTTAATGAGCATGCAGGTT+AGG - chr1_3:44979317-44979336 Msa0120310:CDS 40.0%
TAGAGTTTCAGCACAATGCA+AGG - chr1_3:44979386-44979405 Msa0120310:CDS 40.0%
GAATCCCATGTCTCTATTTG+TGG + chr1_3:44979456-44979475 None:intergenic 40.0%
GGGGTTACTTACAAGATCAG+TGG + chr1_3:44976871-44976890 None:intergenic 45.0%
ACCAAATGGTCCTGAGAAGT+GGG - chr1_3:44977298-44977317 Msa0120310:CDS 45.0%
TTTGAGCATGCTGCAAACGA+TGG + chr1_3:44977335-44977354 None:intergenic 45.0%
TCGTTTGCAGCATGCTCAAA+TGG - chr1_3:44977335-44977354 Msa0120310:CDS 45.0%
CGTTTGCAGCATGCTCAAAT+GGG - chr1_3:44977336-44977355 Msa0120310:CDS 45.0%
! ATTAGTCGGTGCCTAGGTAT+CGG - chr1_3:44977636-44977655 Msa0120310:CDS 45.0%
GGAGAGAAGAAGAAGAGAGA+GGG + chr1_3:44977886-44977905 None:intergenic 45.0%
AGAGAGGGTTTCATCGATGT+TGG + chr1_3:44978007-44978026 None:intergenic 45.0%
CAGGATCACCCAAATTGTAG+AGG + chr1_3:44978722-44978741 None:intergenic 45.0%
TCCTGATCCTCTAATCTCCA+AGG - chr1_3:44978737-44978756 Msa0120310:intron 45.0%
ACCTTGGAGATTAGAGGATC+AGG + chr1_3:44978741-44978760 None:intergenic 45.0%
TGGCATCTTTATTGCCCACA+CGG + chr1_3:44979009-44979028 None:intergenic 45.0%
! AAACGTGCCAAGGGCAATTT+TGG + chr1_3:44979029-44979048 None:intergenic 45.0%
CTCTACATCAAACGTGCCAA+GGG + chr1_3:44979038-44979057 None:intergenic 45.0%
TGACACCTTCTTTGCATGGA+GGG + chr1_3:44979114-44979133 None:intergenic 45.0%
ATGACACCTTCTTTGCATGG+AGG + chr1_3:44979115-44979134 None:intergenic 45.0%
TGCTGAAACTCTACACCCAA+TGG + chr1_3:44979379-44979398 None:intergenic 45.0%
!!! AATTTTTAAAAAAAAAGATA+TGG - chr1_3:44978261-44978280 Msa0120310:intron 5.0%
GACCAAATGGTCCTGAGAAG+TGG - chr1_3:44977297-44977316 Msa0120310:CDS 50.0%
CCAAATGGTCCTGAGAAGTG+GGG - chr1_3:44977299-44977318 Msa0120310:CDS 50.0%
! TGCTGCAAACGATGGACTCA+GGG + chr1_3:44977327-44977346 None:intergenic 50.0%
! ATGCTGCAAACGATGGACTC+AGG + chr1_3:44977328-44977347 None:intergenic 50.0%
! TGGGAAAGCACAAAGTCCAG+TGG - chr1_3:44977355-44977374 Msa0120310:intron 50.0%
TAGACCCAACACCGATACCT+AGG + chr1_3:44977650-44977669 None:intergenic 50.0%
CTTACAAACGACCATGAGCC+CGG + chr1_3:44977855-44977874 None:intergenic 50.0%
GGGAGAGAAGAAGAAGAGAG+AGG + chr1_3:44977887-44977906 None:intergenic 50.0%
CTTCTGTGAGGTGAACTAGG+TGG + chr1_3:44978671-44978690 None:intergenic 50.0%
CTAGCCAATGAGAACCGTGT+GGG - chr1_3:44978992-44979011 Msa0120310:intron 50.0%
ATTGCCCACACGGTTCTCAT+TGG + chr1_3:44978999-44979018 None:intergenic 50.0%
CCTCTACATCAAACGTGCCA+AGG + chr1_3:44979039-44979058 None:intergenic 50.0%
CCTTGGCACGTTTGATGTAG+AGG - chr1_3:44979036-44979055 Msa0120310:intron 50.0%
ACTACCCCTCCATGCAAAGA+AGG - chr1_3:44979106-44979125 Msa0120310:intron 50.0%
GACACCTTCTTTGCATGGAG+GGG + chr1_3:44979113-44979132 None:intergenic 50.0%
AGGCCACTTCAGCCATTGAA+TGG - chr1_3:44979406-44979425 Msa0120310:intron 50.0%
CGACCATTCAATGGCTGAAG+TGG + chr1_3:44979412-44979431 None:intergenic 50.0%
CCCCACTTCTCAGGACCATT+TGG + chr1_3:44977302-44977321 None:intergenic 55.0%
!! GGTGCCTAGGTATCGGTGTT+GGG - chr1_3:44977643-44977662 Msa0120310:CDS 55.0%
ATCAAGGGCGGTGCCTCTTA+TGG - chr1_3:44977921-44977940 Msa0120310:intron 55.0%
GCTAGCCAATGAGAACCGTG+TGG - chr1_3:44978991-44979010 Msa0120310:intron 55.0%
CTCAGGGTTCCCCACTTCTC+AGG + chr1_3:44977311-44977330 None:intergenic 60.0%
!! CGGTGCCTAGGTATCGGTGT+TGG - chr1_3:44977642-44977661 Msa0120310:CDS 60.0%
GGCATGCTCCTGCAGAGCAC+CGG - chr1_3:44977833-44977852 Msa0120310:intron 65.0%
! GCATGCTCCTGCAGAGCACC+GGG - chr1_3:44977834-44977853 Msa0120310:intron 65.0%
CCATGAGCCCGGTGCTCTGC+AGG + chr1_3:44977844-44977863 None:intergenic 70.0%
!! CCTGCAGAGCACCGGGCTCA+TGG - chr1_3:44977841-44977860 Msa0120310:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44976797 44979898 44976797 ID=Msa0120310;Name=Msa0120310
chr1_3 mRNA 44976797 44979898 44976797 ID=Msa0120310-mRNA-1;Parent=Msa0120310;Name=Msa0120310-mRNA-1;_AED=0.26;_eAED=0.26;_QI=270|1|1|1|1|1|6|436|267
chr1_3 exon 44976797 44977361 44976797 ID=Msa0120310-mRNA-1:exon:13505;Parent=Msa0120310-mRNA-1
chr1_3 exon 44977542 44977724 44977542 ID=Msa0120310-mRNA-1:exon:13504;Parent=Msa0120310-mRNA-1
chr1_3 exon 44977937 44978042 44977937 ID=Msa0120310-mRNA-1:exon:13503;Parent=Msa0120310-mRNA-1
chr1_3 exon 44978826 44978932 44978826 ID=Msa0120310-mRNA-1:exon:13502;Parent=Msa0120310-mRNA-1
chr1_3 exon 44979214 44979422 44979214 ID=Msa0120310-mRNA-1:exon:13501;Parent=Msa0120310-mRNA-1
chr1_3 exon 44979559 44979898 44979559 ID=Msa0120310-mRNA-1:exon:13500;Parent=Msa0120310-mRNA-1
chr1_3 five_prime_UTR 44979629 44979898 44979629 ID=Msa0120310-mRNA-1:five_prime_utr;Parent=Msa0120310-mRNA-1
chr1_3 CDS 44979559 44979628 44979559 ID=Msa0120310-mRNA-1:cds;Parent=Msa0120310-mRNA-1
chr1_3 CDS 44979214 44979422 44979214 ID=Msa0120310-mRNA-1:cds;Parent=Msa0120310-mRNA-1
chr1_3 CDS 44978826 44978932 44978826 ID=Msa0120310-mRNA-1:cds;Parent=Msa0120310-mRNA-1
chr1_3 CDS 44977937 44978042 44977937 ID=Msa0120310-mRNA-1:cds;Parent=Msa0120310-mRNA-1
chr1_3 CDS 44977542 44977724 44977542 ID=Msa0120310-mRNA-1:cds;Parent=Msa0120310-mRNA-1
chr1_3 CDS 44977233 44977361 44977233 ID=Msa0120310-mRNA-1:cds;Parent=Msa0120310-mRNA-1
chr1_3 three_prime_UTR 44976797 44977232 44976797 ID=Msa0120310-mRNA-1:three_prime_utr;Parent=Msa0120310-mRNA-1
Gene Sequence

>Msa0120310

ATGGCTTTGCAGATTTACTTCTCAATTCTTCTTATTGCAACTTTGGCTCTATGCACTTCAGCAAATTATAATTCGGTTAATTTTAGTTATATTGGACCAAATGGTCCTGAGAAGTGGGGAACCCTGAGTCCATCGTTTGCAGCATGCTCAAATGGGAAAGCACAAAGTCCAGTGGAACTTGTAATGAATGATATTGTCATGAACCAAGAATTGAAACCCTTAGACAGAAACTACCATCCTACAAATGCTACACTTGTTAACAACCAATTCAACATTGGGGTACATTTTGAAGGTAAAGTGGGAGATATTAATATAAATGGAATGAATTATTCATTGAAACAACTTCATTGGCATGCTCCTGCAGAGCACCGGGCTCATGGTCGTTTACATGAAGCGGAGCTCCACCTAGTTCACCTCACAGAAGATAACAATAACATAGCAGTTATTGCAGCCCTCTACAATTTGGGTGATCCTGATCCTCTAATCTCCAAGATTGAAGACAAGTTCTATGAGCTAGCCAATGAGAACCGTGTGGGCAATAAAGATGCCAAAATTGCCCTTGGCACGTTTGATGTAGAGGAAATAAATAAAAGGATCCATAGATATTATAGATATGTTGGCTCTCTCACTACCCCTCCATGCAAAGAAGGTGTCATTTGGAACATCATTGGCAAGGTTAGGACACTCTCCAAAGAACAACTAAAACTTTTAAAGGCACCATTGGGTGTAGAGTTTCAGCACAATGCAAGGCCACTTCAGCCATTGAATGGTCGCAAAATTGAGATGTACAACTACCACAAATAG

Protein sequence

>Msa0120310

MALQIYFSILLIATLALCTSANYNSVNFSYIGPNGPEKWGTLSPSFAACSNGKAQSPVELVMNDIVMNQELKPLDRNYHPTNATLVNNQFNIGVHFEGKVGDININGMNYSLKQLHWHAPAEHRAHGRLHEAELHLVHLTEDNNNIAVIAALYNLGDPDPLISKIEDKFYELANENRVGNKDAKIALGTFDVEEINKRIHRYYRYVGSLTTPPCKEGVIWNIIGKVRTLSKEQLKLLKAPLGVEFQHNARPLQPLNGRKIEMYNYHK*