Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087290 | XP_003592342.3 | 90.338 | 207 | 13 | 2 | 1 | 207 | 85 | 284 | 2.06e-128 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087290 | I3SR39 | 90.338 | 207 | 13 | 2 | 1 | 207 | 85 | 284 | 9.84e-129 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0087290 | -0.816910 | 4.335232e-52 | -8.615850e-47 |
| Msa0006290 | Msa0087290 | 0.824882 | 6.345132e-54 | -8.615850e-47 |
| Msa0054930 | Msa0087290 | 0.803095 | 4.105974e-49 | -8.615850e-47 |
| Msa0057140 | Msa0087290 | 0.813293 | 2.754902e-51 | -8.615850e-47 |
| Msa0071240 | Msa0087290 | 0.800564 | 1.358224e-48 | -8.615850e-47 |
| Msa0087290 | Msa0094920 | 0.820496 | 6.651030e-53 | -8.615850e-47 |
| Msa0087290 | Msa0095010 | 0.817423 | 3.323344e-52 | -8.615850e-47 |
| Msa0087290 | Msa0100300 | 0.821750 | 3.419904e-53 | -8.615850e-47 |
| Msa0087290 | Msa0136390 | 0.821021 | 5.039254e-53 | -8.615850e-47 |
| Msa0087290 | Msa0137040 | 0.803415 | 3.524917e-49 | -8.615850e-47 |
| Msa0087290 | Msa0154770 | 0.811083 | 8.359896e-51 | -8.615850e-47 |
| Msa0087290 | Msa0162770 | -0.807768 | 4.302256e-50 | -8.615850e-47 |
| Msa0087290 | Msa0178990 | 0.828451 | 8.925117e-55 | -8.615850e-47 |
| Msa0087290 | Msa0188680 | -0.803984 | 2.684857e-49 | -8.615850e-47 |
| Msa0087290 | Msa0236270 | 0.818955 | 1.496059e-52 | -8.615850e-47 |
| Msa0087290 | Msa0260210 | 0.815603 | 8.496237e-52 | -8.615850e-47 |
| Msa0087290 | Msa0270220 | -0.810393 | 1.178857e-50 | -8.615850e-47 |
| Msa0087290 | Msa0304290 | 0.825047 | 5.799383e-54 | -8.615850e-47 |
| Msa0087290 | Msa0304330 | 0.828577 | 8.321072e-55 | -8.615850e-47 |
| Msa0087290 | Msa0305890 | 0.817634 | 2.978347e-52 | -8.615850e-47 |
| Msa0087290 | Msa0307830 | -0.801904 | 7.226090e-49 | -8.615850e-47 |
| Msa0087290 | Msa0340810 | 0.814443 | 1.536506e-51 | -8.615850e-47 |
| Msa0087290 | Msa0376690 | 0.811983 | 5.327774e-51 | -8.615850e-47 |
| Msa0087290 | Msa0421780 | -0.813580 | 2.382031e-51 | -8.615850e-47 |
| Msa0087290 | Msa0446580 | 0.803231 | 3.848007e-49 | -8.615850e-47 |
| Msa0087290 | Msa0467960 | -0.805629 | 1.217247e-49 | -8.615850e-47 |
| Msa0087290 | Msa0471590 | 0.817594 | 3.041360e-52 | -8.615850e-47 |
| Msa0087290 | Msa0493920 | 0.818234 | 2.180275e-52 | -8.615850e-47 |
| Msa0087290 | Msa0511490 | 0.802791 | 4.744396e-49 | -8.615850e-47 |
| Msa0087290 | Msa0553220 | -0.806709 | 7.210749e-50 | -8.615850e-47 |
| Msa0087290 | Msa0568820 | 0.816920 | 4.311491e-52 | -8.615850e-47 |
| Msa0087290 | Msa0579370 | 0.803657 | 3.139215e-49 | -8.615850e-47 |
| Msa0087290 | Msa0590680 | 0.815724 | 7.983738e-52 | -8.615850e-47 |
| Msa0087290 | Msa0618010 | 0.817529 | 3.144942e-52 | -8.615850e-47 |
| Msa0087290 | Msa0619070 | 0.840222 | 9.904647e-58 | -8.615850e-47 |
| Msa0087290 | Msa0638320 | 0.801769 | 7.699477e-49 | -8.615850e-47 |
| Msa0087290 | Msa0669850 | 0.809139 | 2.192736e-50 | -8.615850e-47 |
| Msa0087290 | Msa0670270 | 0.821087 | 4.866008e-53 | -8.615850e-47 |
| Msa0087290 | Msa0673010 | -0.810915 | 9.092252e-51 | -8.615850e-47 |
| Msa0087290 | Msa0677270 | 0.802734 | 4.874032e-49 | -8.615850e-47 |
| Msa0087290 | Msa0735310 | 0.819476 | 1.138577e-52 | -8.615850e-47 |
| Msa0087290 | Msa0790390 | -0.812558 | 3.991252e-51 | -8.615850e-47 |
| Msa0087290 | Msa0793390 | 0.803192 | 3.920459e-49 | -8.615850e-47 |
| Msa0087290 | Msa0806920 | 0.808817 | 2.569809e-50 | -8.615850e-47 |
| Msa0087290 | Msa0814250 | 0.806477 | 8.070244e-50 | -8.615850e-47 |
| Msa0087290 | Msa0814320 | 0.807655 | 4.546325e-50 | -8.615850e-47 |
| Msa0087290 | Msa0831870 | 0.826121 | 3.227868e-54 | -8.615850e-47 |
| Msa0087290 | Msa0842830 | 0.803243 | 3.824961e-49 | -8.615850e-47 |
| Msa0087290 | Msa0900630 | 0.811420 | 7.063483e-51 | -8.615850e-47 |
| Msa0087290 | Msa0933290 | 0.808162 | 3.547181e-50 | -8.615850e-47 |
| Msa0087290 | Msa0965860 | 0.808482 | 3.030501e-50 | -8.615850e-47 |
| Msa0087290 | Msa1072460 | -0.804573 | 2.024691e-49 | -8.615850e-47 |
| Msa0087290 | Msa1089840 | 0.811232 | 7.759704e-51 | -8.615850e-47 |
| Msa0087290 | Msa1091530 | 0.811549 | 6.624411e-51 | -8.615850e-47 |
| Msa0087290 | Msa1130210 | -0.807795 | 4.244275e-50 | -8.615850e-47 |
| Msa0087290 | Msa1171870 | 0.805212 | 1.488694e-49 | -8.615850e-47 |
| Msa0087290 | Msa1217830 | 0.801478 | 8.836905e-49 | -8.615850e-47 |
| Msa0087290 | Msa1267260 | 0.819770 | 9.752564e-53 | -8.615850e-47 |
| Msa0087290 | Msa1269300 | 0.813948 | 1.976514e-51 | -8.615850e-47 |
| Msa0087290 | Msa1282920 | 0.808602 | 2.857682e-50 | -8.615850e-47 |
| Msa0087290 | Msa1302190 | -0.806664 | 7.371597e-50 | -8.615850e-47 |
| Msa0087290 | Msa1306430 | 0.809605 | 1.742430e-50 | -8.615850e-47 |
| Msa0087290 | Msa1359390 | 0.820905 | 5.356665e-53 | -8.615850e-47 |
| Msa0087290 | Msa1403580 | -0.818929 | 1.516927e-52 | -8.615850e-47 |
| Msa0087290 | Msa1404010 | 0.800924 | 1.147003e-48 | -8.615850e-47 |
| Msa0087290 | Msa1440000 | 0.802480 | 5.498232e-49 | -8.615850e-47 |
| Msa0087290 | Msa1443290 | -0.802178 | 6.344858e-49 | -8.615850e-47 |
| Msa0087290 | Msa1452470 | 0.826365 | 2.823122e-54 | -8.615850e-47 |
| Msa0087290 | Msa1461280 | 0.800929 | 1.144241e-48 | -8.615850e-47 |
| Msa0087290 | Msa1465960 | 0.829350 | 5.408597e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087290 | MtrunA17_Chr1g0204021 | 90.338 | 207 | 13 | 2 | 1 | 207 | 85 | 284 | 1.89e-132 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087290 | AT5G51880.1 | 65.700 | 207 | 63 | 3 | 1 | 207 | 52 | 250 | 9.80e-86 | 254 |
Find 46 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTTTGGTAACATTTC+TGG | 0.127833 | 1_2:+68187299 | None:intergenic |
| CTGTTCTTGCTGATTCTATT+TGG | 0.169459 | 1_2:-68188559 | Msa0087290:CDS |
| GCTGATTCTATTTGGGATTC+TGG | 0.178268 | 1_2:-68188551 | Msa0087290:CDS |
| TCAGCTGTACATTATTAAAA+AGG | 0.186678 | 1_2:-68187059 | Msa0087290:intron |
| TGTTCTTGCTGATTCTATTT+GGG | 0.287853 | 1_2:-68188558 | Msa0087290:CDS |
| TTTACTCATCAAGGAAGTTT+AGG | 0.292415 | 1_2:-68188635 | Msa0087290:CDS |
| ATTGAAACTGCTGAGGGAAT+TGG | 0.349090 | 1_2:-68188659 | Msa0087290:CDS |
| TAGAGATAATGATCGAATTT+CGG | 0.362145 | 1_2:-68188591 | Msa0087290:CDS |
| GGAGGAGAAACAGTCTTCTA+TGG | 0.362711 | 1_2:-68187520 | Msa0087290:CDS |
| AGATGAATCTGTAGGTTTGC+TGG | 0.376051 | 1_2:+68187558 | None:intergenic |
| TCATCTTCTGATCGTTTAGT+TGG | 0.379584 | 1_2:-68187541 | Msa0087290:CDS |
| TGCAGTAGTTTAAAATCTAC+AGG | 0.388657 | 1_2:+68185828 | None:intergenic |
| TACAAAGTTGGTCAACGGTT+TGG | 0.409112 | 1_2:-68187694 | Msa0087290:CDS |
| CTGGTATATTCTTCATCTGA+AGG | 0.431903 | 1_2:-68187211 | Msa0087290:three_prime_UTR |
| ATGGCACTCTTGCACATTCA+TGG | 0.434758 | 1_2:-68187345 | Msa0087290:CDS |
| CAAGAGTGCCATCCCTTCAA+TGG | 0.441258 | 1_2:+68187356 | None:intergenic |
| ATCGATGAGAGTAATGATCT+TGG | 0.448560 | 1_2:-68187664 | Msa0087290:CDS |
| CAAATAGAATCAGCAAGAAC+AGG | 0.457794 | 1_2:+68188560 | None:intergenic |
| TCTTCTGATCGTTTAGTTGG+AGG | 0.471044 | 1_2:-68187538 | Msa0087290:CDS |
| AAGAAATAGCATTGTGGCTG+AGG | 0.471528 | 1_2:-68187494 | Msa0087290:intron |
| ATGCCTTGTATCAAATTCTC+TGG | 0.474126 | 1_2:-68187230 | Msa0087290:three_prime_UTR |
| TGTAAAATATGTCTTTCGTT+CGG | 0.480181 | 1_2:-68187280 | Msa0087290:CDS |
| TTACAGGTTGCTCCCATTGA+AGG | 0.491280 | 1_2:-68187369 | Msa0087290:intron |
| CTATAAGCTTCACCTTTCGC+TGG | 0.500286 | 1_2:+68188611 | None:intergenic |
| TTGCTAGTTTATTTGAGTGG+TGG | 0.514398 | 1_2:-68187616 | Msa0087290:CDS |
| TCGGATGTTGTATTTGCTTG+AGG | 0.515517 | 1_2:-68187261 | Msa0087290:exon |
| GCCTTGGATTTAACTTCACC+AGG | 0.523946 | 1_2:+68187592 | None:intergenic |
| ACTTTGCTAGTTTATTTGAG+TGG | 0.528948 | 1_2:-68187619 | Msa0087290:CDS |
| TTGTATTTCAGGTACAAAGT+TGG | 0.529640 | 1_2:-68187706 | Msa0087290:CDS |
| AAGAGTGCCATCCCTTCAAT+GGG | 0.530149 | 1_2:+68187357 | None:intergenic |
| GTTTATTTGAGTGGTGGACC+TGG | 0.532494 | 1_2:-68187610 | Msa0087290:CDS |
| GAGAGTAATGATCTTGGAGA+TGG | 0.540105 | 1_2:-68187658 | Msa0087290:CDS |
| TACAGGTTGCTCCCATTGAA+GGG | 0.545508 | 1_2:-68187368 | Msa0087290:intron |
| CGATCAGAAGATGAATCTGT+AGG | 0.582135 | 1_2:+68187550 | None:intergenic |
| TCAGGTACAAAGTTGGTCAA+CGG | 0.585507 | 1_2:-68187699 | Msa0087290:CDS |
| GGTTGCTCCCATTGAAGGGA+TGG | 0.588083 | 1_2:-68187364 | Msa0087290:CDS |
| GGCATTCATTGAAACTGCTG+AGG | 0.593567 | 1_2:-68188666 | Msa0087290:CDS |
| ACCTGGTGAAGTTAAATCCA+AGG | 0.602043 | 1_2:-68187593 | Msa0087290:CDS |
| ATTCGAGGGAAAGCTGCTGT+AGG | 0.610629 | 1_2:-68188500 | Msa0087290:intron |
| GCATTCATTGAAACTGCTGA+GGG | 0.636238 | 1_2:-68188665 | Msa0087290:CDS |
| TTTCTGATATAAGAATTCGA+GGG | 0.649354 | 1_2:-68188514 | Msa0087290:CDS |
| GAAGCCAGAAATGTTACCAA+AGG | 0.654558 | 1_2:-68187303 | Msa0087290:CDS |
| GGAAGTTTAGGTCCAGCGAA+AGG | 0.660755 | 1_2:-68188623 | Msa0087290:CDS |
| AAATGCATGACAATTGGTGA+AGG | 0.662745 | 1_2:+68187730 | None:intergenic |
| ATACCAGAGAATTTGATACA+AGG | 0.662856 | 1_2:+68187227 | None:intergenic |
| TGGTTCAAGAAATAGCATTG+TGG | 0.705639 | 1_2:-68187500 | Msa0087290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | + | chr1_2:68189968-68189987 | None:intergenic | 0.0% |
| !!! | CAAAAAAAAAATATCAATTT+TGG | + | chr1_2:68185990-68186009 | None:intergenic | 10.0% |
| !! | TATTTCATCTTAATTATTTG+AGG | - | chr1_2:68185926-68185945 | Msa0087290:intron | 15.0% |
| !!! | TAAACATCTTTTTAATGAAA+TGG | - | chr1_2:68186113-68186132 | Msa0087290:intron | 15.0% |
| !! | TGAACAAAATACTTAATAAA+TGG | - | chr1_2:68186683-68186702 | Msa0087290:intron | 15.0% |
| !! | ATATAGAAATAAGATTGAAA+TGG | + | chr1_2:68187338-68187357 | None:intergenic | 15.0% |
| !! | AATAATTCACAGATAAAATT+GGG | + | chr1_2:68187723-68187742 | None:intergenic | 15.0% |
| !! | ATCCAAATATTAGATTATAT+AGG | - | chr1_2:68187991-68188010 | Msa0087290:intron | 15.0% |
| !! | AACCTATATAATCTAATATT+TGG | + | chr1_2:68187996-68188015 | None:intergenic | 15.0% |
| !!! | TTTTTGCTATAAATTAGTTA+AGG | - | chr1_2:68188287-68188306 | Msa0087290:intron | 15.0% |
| !!! | TTTTGCTATAAATTAGTTAA+GGG | - | chr1_2:68188288-68188307 | Msa0087290:intron | 15.0% |
| !! | ATATAAATAGCTTATACATA+AGG | - | chr1_2:68188505-68188524 | Msa0087290:CDS | 15.0% |
| !! | TATAAATAGCTTATACATAA+GGG | - | chr1_2:68188506-68188525 | Msa0087290:CDS | 15.0% |
| !! | TAAAAGTAATTCCTATATAA+CGG | + | chr1_2:68190173-68190192 | None:intergenic | 15.0% |
| !!! | TTATATAGGAATTACTTTTA+TGG | - | chr1_2:68190173-68190192 | Msa0087290:intron | 15.0% |
| !!! | GATGATATTTTTGTTATTTA+TGG | - | chr1_2:68190387-68190406 | Msa0087290:intron | 15.0% |
| !!! | TTTTGAAATCTATAGTTGTT+GGG | + | chr1_2:68186201-68186220 | None:intergenic | 20.0% |
| !!! | ATTTTGAAATCTATAGTTGT+TGG | + | chr1_2:68186202-68186221 | None:intergenic | 20.0% |
| !!! | GATGAAATTTGGTATATTTT+GGG | + | chr1_2:68186247-68186266 | None:intergenic | 20.0% |
| !!! | TGATGAAATTTGGTATATTT+TGG | + | chr1_2:68186248-68186267 | None:intergenic | 20.0% |
| !!! | AATTAGAACCAAATTTTGAT+TGG | + | chr1_2:68186512-68186531 | None:intergenic | 20.0% |
| !!! | AAAATTTGGTTCTAATTAGT+GGG | - | chr1_2:68186515-68186534 | Msa0087290:intron | 20.0% |
| !! | ACCAAAAAAATGATTCATAT+TGG | - | chr1_2:68186575-68186594 | Msa0087290:intron | 20.0% |
| !! | CCAAAAAAATGATTCATATT+GGG | - | chr1_2:68186576-68186595 | Msa0087290:intron | 20.0% |
| !! | CAAAAAAATGATTCATATTG+GGG | - | chr1_2:68186577-68186596 | Msa0087290:intron | 20.0% |
| !! | GAATGAATTCAAACAATATA+AGG | - | chr1_2:68187041-68187060 | Msa0087290:intron | 20.0% |
| !! | ATAAATCATATTGAAATGGA+CGG | + | chr1_2:68187210-68187229 | None:intergenic | 20.0% |
| !! | GGATATAAATCATATTGAAA+TGG | + | chr1_2:68187214-68187233 | None:intergenic | 20.0% |
| !!! | ACATAGTTAAATAATGGATA+AGG | + | chr1_2:68187235-68187254 | None:intergenic | 20.0% |
| !! | TTGACAACATAGTTAAATAA+TGG | + | chr1_2:68187241-68187260 | None:intergenic | 20.0% |
| !!! | CTCATTCTAAAAAATATCAA+TGG | - | chr1_2:68187420-68187439 | Msa0087290:intron | 20.0% |
| !! | GAATAATTCACAGATAAAAT+TGG | + | chr1_2:68187724-68187743 | None:intergenic | 20.0% |
| !!! | GATTATTGTATAGTTCTATA+AGG | - | chr1_2:68188050-68188069 | Msa0087290:intron | 20.0% |
| !! | ATAAGCTATTTATATAGCAA+AGG | + | chr1_2:68188500-68188519 | None:intergenic | 20.0% |
| !!! | TGATACAATTTTGATTTTAC+AGG | - | chr1_2:68189078-68189097 | Msa0087290:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | + | chr1_2:68189808-68189827 | None:intergenic | 20.0% |
| !! | TATATATTGTTCCGTTATAT+AGG | - | chr1_2:68190159-68190178 | Msa0087290:intron | 20.0% |
| !!! | TTTAATGTTACTTCTCAATT+AGG | - | chr1_2:68190470-68190489 | Msa0087290:intron | 20.0% |
| !! | AAAGTTTGTAGAACATAATT+AGG | - | chr1_2:68190558-68190577 | Msa0087290:intron | 20.0% |
| ! | AGATTGAATGAAGAGATATT+GGG | - | chr1_2:68185817-68185836 | Msa0087290:three_prime_UTR | 25.0% |
| ! | TTGGTTGAATTTAATACACT+TGG | - | chr1_2:68185868-68185887 | Msa0087290:intron | 25.0% |
| ! | TTTGTCTATAAATAGAGACT+TGG | - | chr1_2:68186006-68186025 | Msa0087290:intron | 25.0% |
| ! | GTGTTAAAAGGGTTATTATT+GGG | + | chr1_2:68186141-68186160 | None:intergenic | 25.0% |
| !!! | TAGAATTTTGGGTGTTAAAA+GGG | + | chr1_2:68186152-68186171 | None:intergenic | 25.0% |
| !! | AGGGTAATTAGTAGAATTTT+GGG | + | chr1_2:68186163-68186182 | None:intergenic | 25.0% |
| !! | AAGGGTAATTAGTAGAATTT+TGG | + | chr1_2:68186164-68186183 | None:intergenic | 25.0% |
| !! | AATGAAAATGTTCTGAATGT+CGG | - | chr1_2:68186363-68186382 | Msa0087290:intron | 25.0% |
| !! | TTCTGAATTTTCTACACAAA+TGG | - | chr1_2:68186398-68186417 | Msa0087290:intron | 25.0% |
| !!! | CAAAATTTGGTTCTAATTAG+TGG | - | chr1_2:68186514-68186533 | Msa0087290:intron | 25.0% |
| !!! | CCCAATATGAATCATTTTTT+TGG | + | chr1_2:68186579-68186598 | None:intergenic | 25.0% |
| ! | AAAGGGTAAAAAGAAAAGTA+AGG | - | chr1_2:68186987-68187006 | Msa0087290:intron | 25.0% |
| ! | AAGGGTAAAAAGAAAAGTAA+GGG | - | chr1_2:68186988-68187007 | Msa0087290:intron | 25.0% |
| ! | AAGTACTTTCTTTCAACAAT+TGG | + | chr1_2:68187119-68187138 | None:intergenic | 25.0% |
| ! | ACTTCATTGCATTATTTGTT+TGG | - | chr1_2:68187305-68187324 | Msa0087290:CDS | 25.0% |
| !!! | TTTAAATTGAGTTGGTGAAA+TGG | + | chr1_2:68187394-68187413 | None:intergenic | 25.0% |
| ! | TTTCACCAACTCAATTTAAA+TGG | - | chr1_2:68187394-68187413 | Msa0087290:intron | 25.0% |
| ! | TTCACCAACTCAATTTAAAT+GGG | - | chr1_2:68187395-68187414 | Msa0087290:intron | 25.0% |
| !!! | CTTATTTTGATGATTTTTCC+AGG | - | chr1_2:68187743-68187762 | Msa0087290:CDS | 25.0% |
| !! | CTTTTCATCTTATGAATCAA+AGG | - | chr1_2:68187776-68187795 | Msa0087290:intron | 25.0% |
| ! | TAGAGATAATGATCGAATTT+CGG | - | chr1_2:68187872-68187891 | Msa0087290:intron | 25.0% |
| !! | TTTTCTGATATAAGAATTCG+AGG | - | chr1_2:68187948-68187967 | Msa0087290:intron | 25.0% |
| ! | TTTCTGATATAAGAATTCGA+GGG | - | chr1_2:68187949-68187968 | Msa0087290:intron | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr1_2:68188563-68188582 | Msa0087290:CDS | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | - | chr1_2:68188564-68188583 | Msa0087290:CDS | 25.0% |
| ! | ACACATGATGTCTTTAAATT+TGG | - | chr1_2:68188687-68188706 | Msa0087290:CDS | 25.0% |
| ! | TACAAAAAATGCATGACAAT+TGG | + | chr1_2:68188742-68188761 | None:intergenic | 25.0% |
| !!! | TCATGCATTTTTTGTATTTC+AGG | - | chr1_2:68188746-68188765 | Msa0087290:intron | 25.0% |
| !! | AAAGACATATTTTACACCTT+TGG | + | chr1_2:68189179-68189198 | None:intergenic | 25.0% |
| ! | TGTAAAATATGTCTTTCGTT+CGG | - | chr1_2:68189183-68189202 | Msa0087290:intron | 25.0% |
| !! | TGTTATAATTTTGCTGAATC+TGG | - | chr1_2:68189372-68189391 | Msa0087290:intron | 25.0% |
| !! | GTTATAATTTTGCTGAATCT+GGG | - | chr1_2:68189373-68189392 | Msa0087290:intron | 25.0% |
| ! | TCAGCTGTACATTATTAAAA+AGG | - | chr1_2:68189404-68189423 | Msa0087290:intron | 25.0% |
| ! | CAGCTGTACATTATTAAAAA+GGG | - | chr1_2:68189405-68189424 | Msa0087290:intron | 25.0% |
| !! | AAAAAAAATGTTCTGAGTAG+CGG | + | chr1_2:68189457-68189476 | None:intergenic | 25.0% |
| !!! | TACTTCAAGTTGAATATCAT+AGG | - | chr1_2:68190197-68190216 | Msa0087290:intron | 25.0% |
| !!! | TATCATCACTACTTTTCATA+GGG | + | chr1_2:68190374-68190393 | None:intergenic | 25.0% |
| !!! | ATATCATCACTACTTTTCAT+AGG | + | chr1_2:68190375-68190394 | None:intergenic | 25.0% |
| CAGATTGAATGAAGAGATAT+TGG | - | chr1_2:68185816-68185835 | Msa0087290:three_prime_UTR | 30.0% | |
| GATTGAATGAAGAGATATTG+GGG | - | chr1_2:68185818-68185837 | Msa0087290:three_prime_UTR | 30.0% | |
| ATTGAATGAAGAGATATTGG+GGG | - | chr1_2:68185819-68185838 | Msa0087290:three_prime_UTR | 30.0% | |
| TACACTTGGCAAAATTCTAT+TGG | - | chr1_2:68185882-68185901 | Msa0087290:intron | 30.0% | |
| GGCTAAATAGAAACATTAGA+GGG | + | chr1_2:68186068-68186087 | None:intergenic | 30.0% | |
| AGGCTAAATAGAAACATTAG+AGG | + | chr1_2:68186069-68186088 | None:intergenic | 30.0% | |
| GGTGTTAAAAGGGTTATTAT+TGG | + | chr1_2:68186142-68186161 | None:intergenic | 30.0% | |
| !! | GTAGAATTTTGGGTGTTAAA+AGG | + | chr1_2:68186153-68186172 | None:intergenic | 30.0% |
| AATCTATAGTTGTTGGGATT+TGG | + | chr1_2:68186195-68186214 | None:intergenic | 30.0% | |
| ! | CGTTAATTTGGATTAGATGA+CGG | + | chr1_2:68186273-68186292 | None:intergenic | 30.0% |
| CCATTATATGGACGTTAATT+TGG | + | chr1_2:68186285-68186304 | None:intergenic | 30.0% | |
| CCAAATTAACGTCCATATAA+TGG | - | chr1_2:68186282-68186301 | Msa0087290:intron | 30.0% | |
| ! | AGAACATTTTCATTTCCCAT+TGG | + | chr1_2:68186357-68186376 | None:intergenic | 30.0% |
| !! | TTTTGATTGGTGTTCCAATT+GGG | + | chr1_2:68186499-68186518 | None:intergenic | 30.0% |
| !!! | ATTTTGATTGGTGTTCCAAT+TGG | + | chr1_2:68186500-68186519 | None:intergenic | 30.0% |
| TTGGAACACCAATCAAAATT+TGG | - | chr1_2:68186501-68186520 | Msa0087290:intron | 30.0% | |
| !! | ATTAGTGGGTGGATTAAATA+TGG | - | chr1_2:68186529-68186548 | Msa0087290:intron | 30.0% |
| TTATATTCAAGTGGTAAGAG+TGG | - | chr1_2:68186784-68186803 | Msa0087290:intron | 30.0% | |
| ! | GACATTTTCAGTTTAATGTC+AGG | - | chr1_2:68186806-68186825 | Msa0087290:intron | 30.0% |
| ! | TTTTCAGTTTAATGTCAGGA+TGG | - | chr1_2:68186810-68186829 | Msa0087290:intron | 30.0% |
| ! | CTCTTCATTAACTGATTCTA+AGG | + | chr1_2:68187019-68187038 | None:intergenic | 30.0% |
| TAGAATCAGTTAATGAAGAG+TGG | - | chr1_2:68187019-68187038 | Msa0087290:intron | 30.0% | |
| ACTACATTGCATTGTTTGTT+TGG | - | chr1_2:68187361-68187380 | Msa0087290:CDS | 30.0% | |
| TCACCAACTCAATTTAAATG+GGG | - | chr1_2:68187396-68187415 | Msa0087290:intron | 30.0% | |
| TTGATATCGAAGCTTACAAA+AGG | - | chr1_2:68187452-68187471 | Msa0087290:intron | 30.0% | |
| AAAGCAAATAGAATAGAGGA+AGG | - | chr1_2:68187525-68187544 | Msa0087290:CDS | 30.0% | |
| !!! | AAGATTGTTTTTGGGTTTGA+TGG | + | chr1_2:68187625-68187644 | None:intergenic | 30.0% |
| !! | GTGATGTGAAGATTGTTTTT+GGG | + | chr1_2:68187633-68187652 | None:intergenic | 30.0% |
| ! | AGTGATGTGAAGATTGTTTT+TGG | + | chr1_2:68187634-68187653 | None:intergenic | 30.0% |
| TGGGAAAAGAAAAAGAAGAA+GGG | + | chr1_2:68187704-68187723 | None:intergenic | 30.0% | |
| TTGGGAAAAGAAAAAGAAGA+AGG | + | chr1_2:68187705-68187724 | None:intergenic | 30.0% | |
| ATGAAAAGAAATTCTGAACC+TGG | + | chr1_2:68187764-68187783 | None:intergenic | 30.0% | |
| TTTACTCATCAAGGAAGTTT+AGG | - | chr1_2:68187828-68187847 | Msa0087290:intron | 30.0% | |
| !! | TGTTCTTGCTGATTCTATTT+GGG | - | chr1_2:68187905-68187924 | Msa0087290:intron | 30.0% |
| TCAACTAAGTTAATCCAAAC+AGG | + | chr1_2:68188077-68188096 | None:intergenic | 30.0% | |
| AAATTAGTTAAGGGTCTGTT+TGG | - | chr1_2:68188297-68188316 | Msa0087290:intron | 30.0% | |
| TAAGCTATTTATCCAAACAG+GGG | - | chr1_2:68188565-68188584 | Msa0087290:CDS | 30.0% | |
| CTAAGTTGTTTATGCAAACA+AGG | - | chr1_2:68188588-68188607 | Msa0087290:CDS | 30.0% | |
| ! | TTGTATTTCAGGTACAAAGT+TGG | - | chr1_2:68188757-68188776 | Msa0087290:intron | 30.0% |
| ! | ACTTTGCTAGTTTATTTGAG+TGG | - | chr1_2:68188844-68188863 | Msa0087290:intron | 30.0% |
| !! | ATGTTGCTTAATGCAAGTTT+TGG | - | chr1_2:68189027-68189046 | Msa0087290:intron | 30.0% |
| !! | TGTTGCTTAATGCAAGTTTT+GGG | - | chr1_2:68189028-68189047 | Msa0087290:intron | 30.0% |
| ATACCAGAGAATTTGATACA+AGG | + | chr1_2:68189239-68189258 | None:intergenic | 30.0% | |
| ! | AAAAAAATGTTCTGAGTAGC+GGG | + | chr1_2:68189456-68189475 | None:intergenic | 30.0% |
| !! | TTTTTGGTAGATAGACGAAA+TGG | - | chr1_2:68189482-68189501 | Msa0087290:intron | 30.0% |
| TTCTGTGTGTGAGTTTATAA+TGG | + | chr1_2:68189513-68189532 | None:intergenic | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | - | chr1_2:68189815-68189834 | Msa0087290:intron | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | - | chr1_2:68189816-68189835 | Msa0087290:intron | 30.0% | |
| GAAAGATTGATTAGAGATCT+AGG | - | chr1_2:68189846-68189865 | Msa0087290:intron | 30.0% | |
| !! | TCAAGTTGAATATCATAGGA+AGG | - | chr1_2:68190201-68190220 | Msa0087290:intron | 30.0% |
| ! | CAAGTTGAATATCATAGGAA+GGG | - | chr1_2:68190202-68190221 | Msa0087290:intron | 30.0% |
| TTTCCAGGATTGAATATCAT+AGG | - | chr1_2:68190327-68190346 | Msa0087290:intron | 30.0% | |
| !! | ATCATCACTACTTTTCATAG+GGG | + | chr1_2:68190373-68190392 | None:intergenic | 30.0% |
| ATTTATGGACATCTGTTTGT+AGG | - | chr1_2:68190402-68190421 | Msa0087290:intron | 30.0% | |
| TTTATGGACATCTGTTTGTA+GGG | - | chr1_2:68190403-68190422 | Msa0087290:intron | 30.0% | |
| CTACAAACTTTAACCTAAGA+AGG | + | chr1_2:68190549-68190568 | None:intergenic | 30.0% | |
| AATCTACAGGAATTTCATGT+TGG | + | chr1_2:68190625-68190644 | None:intergenic | 30.0% | |
| ! | TGCAGTAGTTTAAAATCTAC+AGG | + | chr1_2:68190638-68190657 | None:intergenic | 30.0% |
| GGAGGCAAATTATTTCATGT+TGG | - | chr1_2:68185849-68185868 | Msa0087290:intron | 35.0% | |
| ! | GAGACTTGGTTCATTTGATT+TGG | - | chr1_2:68186020-68186039 | Msa0087290:intron | 35.0% |
| !! | TGGTTCATTTGATTTGGACA+CGG | - | chr1_2:68186026-68186045 | Msa0087290:intron | 35.0% |
| TACAAACAAGAGTTTAGTGG+AGG | + | chr1_2:68186089-68186108 | None:intergenic | 35.0% | |
| AGCTACAAACAAGAGTTTAG+TGG | + | chr1_2:68186092-68186111 | None:intergenic | 35.0% | |
| AATGAATCTTCCAACCAACA+AGG | - | chr1_2:68186219-68186238 | Msa0087290:intron | 35.0% | |
| !! | GTATATTTTGGGAACCTTGT+TGG | + | chr1_2:68186236-68186255 | None:intergenic | 35.0% |
| GGCATCATTGATCCATTATA+TGG | + | chr1_2:68186297-68186316 | None:intergenic | 35.0% | |
| TTGGAGTGGACGAATTATAA+GGG | + | chr1_2:68186338-68186357 | None:intergenic | 35.0% | |
| ATTGGAGTGGACGAATTATA+AGG | + | chr1_2:68186339-68186358 | None:intergenic | 35.0% | |
| TTATAATTCGTCCACTCCAA+TGG | - | chr1_2:68186338-68186357 | Msa0087290:intron | 35.0% | |
| TATAATTCGTCCACTCCAAT+GGG | - | chr1_2:68186339-68186358 | Msa0087290:intron | 35.0% | |
| ! | ATTTTCATTTCCCATTGGAG+TGG | + | chr1_2:68186352-68186371 | None:intergenic | 35.0% |
| ! | TTTTCTACACAAATGGCTCT+TGG | - | chr1_2:68186405-68186424 | Msa0087290:intron | 35.0% |
| ! | TGAATCCTTTGCATTTTGAG+TGG | + | chr1_2:68186454-68186473 | None:intergenic | 35.0% |
| ! | TTTGATTGGTGTTCCAATTG+GGG | + | chr1_2:68186498-68186517 | None:intergenic | 35.0% |
| !! | ATTTGGTTCTAATTAGTGGG+TGG | - | chr1_2:68186518-68186537 | Msa0087290:intron | 35.0% |
| TATGGAACAGACAATGTTGT+TGG | - | chr1_2:68186547-68186566 | Msa0087290:intron | 35.0% | |
| ATGGAACAGACAATGTTGTT+GGG | - | chr1_2:68186548-68186567 | Msa0087290:intron | 35.0% | |
| GCGCATGAATTATATTCAAG+TGG | - | chr1_2:68186775-68186794 | Msa0087290:intron | 35.0% | |
| TATCATAACGTGGTTGATCA+TGG | + | chr1_2:68186844-68186863 | None:intergenic | 35.0% | |
| GTTTGTGAAGCTAAGTTCAA+AGG | - | chr1_2:68187158-68187177 | Msa0087290:three_prime_UTR | 35.0% | |
| TAACTATGTTGTCAAGTCGT+TGG | - | chr1_2:68187246-68187265 | Msa0087290:exon | 35.0% | |
| !! | AATTGAGTTGGTGAAATGGA+CGG | + | chr1_2:68187390-68187409 | None:intergenic | 35.0% |
| CACCAACTCAATTTAAATGG+GGG | - | chr1_2:68187397-68187416 | Msa0087290:intron | 35.0% | |
| ATATCGAAGCTTACAAAAGG+CGG | - | chr1_2:68187455-68187474 | Msa0087290:intron | 35.0% | |
| ! | AAGAGAGGTATATCCTCAAA+CGG | - | chr1_2:68187488-68187507 | Msa0087290:intron | 35.0% |
| GACGAAAGCAAATAGAATAG+AGG | - | chr1_2:68187521-68187540 | Msa0087290:CDS | 35.0% | |
| !!! | TTGTTTTTGGGTTTGATGGA+AGG | + | chr1_2:68187621-68187640 | None:intergenic | 35.0% |
| !!! | GGAATTGGTTTTACTCATCA+AGG | - | chr1_2:68187819-68187838 | Msa0087290:intron | 35.0% |
| CAAATAGAATCAGCAAGAAC+AGG | + | chr1_2:68187906-68187925 | None:intergenic | 35.0% | |
| !! | CTGTTCTTGCTGATTCTATT+TGG | - | chr1_2:68187904-68187923 | Msa0087290:intron | 35.0% |
| ! | TAGTTCTATAAGGACCTGTT+TGG | - | chr1_2:68188060-68188079 | Msa0087290:intron | 35.0% |
| GAGCTATCATAAAGAGCTTA+CGG | + | chr1_2:68188172-68188191 | None:intergenic | 35.0% | |
| !! | TCTGTTTGGATTGACTTGTT+TGG | - | chr1_2:68188311-68188330 | Msa0087290:intron | 35.0% |
| !! | CTGTTTGGATTGACTTGTTT+GGG | - | chr1_2:68188312-68188331 | Msa0087290:intron | 35.0% |
| ! | ACTTGTTTGGGTTTATCTAC+CGG | - | chr1_2:68188324-68188343 | Msa0087290:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr1_2:68188440-68188459 | None:intergenic | 35.0% |
| AAATGCATGACAATTGGTGA+AGG | + | chr1_2:68188736-68188755 | None:intergenic | 35.0% | |
| ATCGATGAGAGTAATGATCT+TGG | - | chr1_2:68188799-68188818 | Msa0087290:intron | 35.0% | |
| ! | TTGCTAGTTTATTTGAGTGG+TGG | - | chr1_2:68188847-68188866 | Msa0087290:intron | 35.0% |
| TCATCTTCTGATCGTTTAGT+TGG | - | chr1_2:68188922-68188941 | Msa0087290:intron | 35.0% | |
| TGGTTCAAGAAATAGCATTG+TGG | - | chr1_2:68188963-68188982 | Msa0087290:intron | 35.0% | |
| ATGTCACTATTTGCTTGCTT+TGG | - | chr1_2:68189051-68189070 | Msa0087290:intron | 35.0% | |
| TGTCACTATTTGCTTGCTTT+GGG | - | chr1_2:68189052-68189071 | Msa0087290:intron | 35.0% | |
| ! | TACACCTTTGGTAACATTTC+TGG | + | chr1_2:68189167-68189186 | None:intergenic | 35.0% |
| ATGCCTTGTATCAAATTCTC+TGG | - | chr1_2:68189233-68189252 | Msa0087290:intron | 35.0% | |
| CTGGTATATTCTTCATCTGA+AGG | - | chr1_2:68189252-68189271 | Msa0087290:intron | 35.0% | |
| TATAAACTCACACACAGAAG+TGG | - | chr1_2:68189514-68189533 | Msa0087290:intron | 35.0% | |
| ! | AGAACAGAGATGAGATTTTG+TGG | + | chr1_2:68189774-68189793 | None:intergenic | 35.0% |
| TTCCGCTTTGACAACTATTT+CGG | - | chr1_2:68190078-68190097 | Msa0087290:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr1_2:68190302-68190321 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr1_2:68190301-68190320 | Msa0087290:intron | 35.0% |
| CTTCCTATGATATTCAATCC+TGG | + | chr1_2:68190333-68190352 | None:intergenic | 35.0% | |
| AAAATGTCTTGCAGTGTTCA+GGG | + | chr1_2:68190602-68190621 | None:intergenic | 35.0% | |
| AATGAAGAGATATTGGGGGA+GGG | - | chr1_2:68185823-68185842 | Msa0087290:three_prime_UTR | 40.0% | |
| !! | GGTTCATTTGATTTGGACAC+GGG | - | chr1_2:68186027-68186046 | Msa0087290:intron | 40.0% |
| TGGGATTTGGATAGTCGAAA+GGG | + | chr1_2:68186182-68186201 | None:intergenic | 40.0% | |
| TTGGGATTTGGATAGTCGAA+AGG | + | chr1_2:68186183-68186202 | None:intergenic | 40.0% | |
| !! | ATTTTGGGAACCTTGTTGGT+TGG | + | chr1_2:68186232-68186251 | None:intergenic | 40.0% |
| TGGAGTGGACGAATTATAAG+GGG | + | chr1_2:68186337-68186356 | None:intergenic | 40.0% | |
| TGAAGCCACTCAAAATGCAA+AGG | - | chr1_2:68186446-68186465 | Msa0087290:intron | 40.0% | |
| !!! | GTTCCAATTGGGGTTTTTTC+TGG | + | chr1_2:68186488-68186507 | None:intergenic | 40.0% |
| TCAACCACGTTATGATAGTC+AGG | - | chr1_2:68186847-68186866 | Msa0087290:intron | 40.0% | |
| CATACCTGACTATCATAACG+TGG | + | chr1_2:68186854-68186873 | None:intergenic | 40.0% | |
| CGTTATGATAGTCAGGTATG+AGG | - | chr1_2:68186854-68186873 | Msa0087290:intron | 40.0% | |
| AGTCAGGTATGAGGAAATAC+TGG | - | chr1_2:68186863-68186882 | Msa0087290:intron | 40.0% | |
| !! | AATACTGGCTCTGGAAATAG+TGG | - | chr1_2:68186878-68186897 | Msa0087290:intron | 40.0% |
| ATCACTTGCATCACTCTTGT+GGG | + | chr1_2:68186915-68186934 | None:intergenic | 40.0% | |
| AATCACTTGCATCACTCTTG+TGG | + | chr1_2:68186916-68186935 | None:intergenic | 40.0% | |
| GAGGGATGCAGCTAAAAAAA+GGG | - | chr1_2:68186970-68186989 | Msa0087290:intron | 40.0% | |
| GGAGAAAGAGTTAGAACGAT+TGG | - | chr1_2:68187062-68187081 | Msa0087290:three_prime_UTR | 40.0% | |
| CAAAATAGCCATGAGACAAG+AGG | - | chr1_2:68187086-68187105 | Msa0087290:three_prime_UTR | 40.0% | |
| AAATGGACGGATATTTGCTC+CGG | + | chr1_2:68187197-68187216 | None:intergenic | 40.0% | |
| AGCCCCCATTTAAATTGAGT+TGG | + | chr1_2:68187402-68187421 | None:intergenic | 40.0% | |
| GTATATCCTCAAACGGTTCA+GGG | - | chr1_2:68187495-68187514 | Msa0087290:CDS | 40.0% | |
| AAACAACAACCGACCCAAAA+TGG | - | chr1_2:68187595-68187614 | Msa0087290:CDS | 40.0% | |
| !! | GTTTGATGGAAGGCCATTTT+GGG | + | chr1_2:68187611-68187630 | None:intergenic | 40.0% |
| ACGAGATTTCGATCTCTTCA+CGG | - | chr1_2:68187659-68187678 | Msa0087290:CDS | 40.0% | |
| GCATTCATTGAAACTGCTGA+GGG | - | chr1_2:68187798-68187817 | Msa0087290:intron | 40.0% | |
| ATTGAAACTGCTGAGGGAAT+TGG | - | chr1_2:68187804-68187823 | Msa0087290:intron | 40.0% | |
| ! | GCTGATTCTATTTGGGATTC+TGG | - | chr1_2:68187912-68187931 | Msa0087290:intron | 40.0% |
| CAGTCTCGGAAAATTTCTAC+CGG | + | chr1_2:68188346-68188365 | None:intergenic | 40.0% | |
| ! | GAAATTTTCCGAGACTGTTC+AGG | - | chr1_2:68188349-68188368 | Msa0087290:intron | 40.0% |
| TATGTTCTCCTGAACAGTCT+CGG | + | chr1_2:68188360-68188379 | None:intergenic | 40.0% | |
| TAAACAACTTAGCCCCTGTT+TGG | + | chr1_2:68188580-68188599 | None:intergenic | 40.0% | |
| ! | TCAGGTACAAAGTTGGTCAA+CGG | - | chr1_2:68188764-68188783 | Msa0087290:intron | 40.0% |
| ! | TACAAAGTTGGTCAACGGTT+TGG | - | chr1_2:68188769-68188788 | Msa0087290:intron | 40.0% |
| GAGAGTAATGATCTTGGAGA+TGG | - | chr1_2:68188805-68188824 | Msa0087290:intron | 40.0% | |
| ACCTGGTGAAGTTAAATCCA+AGG | - | chr1_2:68188870-68188889 | Msa0087290:intron | 40.0% | |
| !!! | GCTGGAATCATTTTTAGCCT+TGG | + | chr1_2:68188890-68188909 | None:intergenic | 40.0% |
| AGATGAATCTGTAGGTTTGC+TGG | + | chr1_2:68188908-68188927 | None:intergenic | 40.0% | |
| CGATCAGAAGATGAATCTGT+AGG | + | chr1_2:68188916-68188935 | None:intergenic | 40.0% | |
| TCTTCTGATCGTTTAGTTGG+AGG | - | chr1_2:68188925-68188944 | Msa0087290:intron | 40.0% | |
| AAGAAATAGCATTGTGGCTG+AGG | - | chr1_2:68188969-68188988 | Msa0087290:intron | 40.0% | |
| GAAGCCAGAAATGTTACCAA+AGG | - | chr1_2:68189160-68189179 | Msa0087290:intron | 40.0% | |
| TCGGATGTTGTATTTGCTTG+AGG | - | chr1_2:68189202-68189221 | Msa0087290:intron | 40.0% | |
| TGCCGAAATAGTTGTCAAAG+CGG | + | chr1_2:68190083-68190102 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_2:68190276-68190295 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr1_2:68190307-68190326 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr1_2:68190308-68190327 | None:intergenic | 40.0% | |
| TCGAGATATTGTAGATGCGA+TGG | + | chr1_2:68190448-68190467 | None:intergenic | 40.0% | |
| AGTGTTCAGGGTATGGTAAA+TGG | + | chr1_2:68190590-68190609 | None:intergenic | 40.0% | |
| GAAAATGTCTTGCAGTGTTC+AGG | + | chr1_2:68190603-68190622 | None:intergenic | 40.0% | |
| GAATGAAGAGATATTGGGGG+AGG | - | chr1_2:68185822-68185841 | Msa0087290:three_prime_UTR | 45.0% | |
| ! | GATGACGGCGTGATGAAATT+TGG | + | chr1_2:68186258-68186277 | None:intergenic | 45.0% |
| !! | GGGGGTGTTTGAGATGAATA+AGG | + | chr1_2:68186318-68186337 | None:intergenic | 45.0% |
| GGAGTGGACGAATTATAAGG+GGG | + | chr1_2:68186336-68186355 | None:intergenic | 45.0% | |
| TCTACACAAATGGCTCTTGG+TGG | - | chr1_2:68186408-68186427 | Msa0087290:intron | 45.0% | |
| TCGCCAGAAAAAACCCCAAT+TGG | - | chr1_2:68186482-68186501 | Msa0087290:intron | 45.0% | |
| ! | TTTTGCACGTAGCTGCATCA+CGG | + | chr1_2:68186648-68186667 | None:intergenic | 45.0% |
| CTGAGCGTATGCAACAAAGT+GGG | - | chr1_2:68186725-68186744 | Msa0087290:intron | 45.0% | |
| TATGCAACAAAGTGGGTGGT+CGG | - | chr1_2:68186732-68186751 | Msa0087290:intron | 45.0% | |
| GTGGTCGGAGAATGATGTAT+TGG | - | chr1_2:68186747-68186766 | Msa0087290:intron | 45.0% | |
| !! | GTATGAGGAAATACTGGCTC+TGG | - | chr1_2:68186869-68186888 | Msa0087290:intron | 45.0% |
| GCAAGTGATTCCAACTCCAT+AGG | - | chr1_2:68186926-68186945 | Msa0087290:intron | 45.0% | |
| AGCACTAGATCCTATGGAGT+TGG | + | chr1_2:68186939-68186958 | None:intergenic | 45.0% | |
| TGAGTGAGCACTAGATCCTA+TGG | + | chr1_2:68186945-68186964 | None:intergenic | 45.0% | |
| AGGATCTAGTGCTCACTCAA+TGG | - | chr1_2:68186946-68186965 | Msa0087290:intron | 45.0% | |
| GGATCTAGTGCTCACTCAAT+GGG | - | chr1_2:68186947-68186966 | Msa0087290:intron | 45.0% | |
| GATCTAGTGCTCACTCAATG+GGG | - | chr1_2:68186948-68186967 | Msa0087290:intron | 45.0% | |
| GGAGGGATGCAGCTAAAAAA+AGG | - | chr1_2:68186969-68186988 | Msa0087290:intron | 45.0% | |
| AATAGCCATGAGACAAGAGG+AGG | - | chr1_2:68187089-68187108 | Msa0087290:three_prime_UTR | 45.0% | |
| ATAGCCATGAGACAAGAGGA+GGG | - | chr1_2:68187090-68187109 | Msa0087290:three_prime_UTR | 45.0% | |
| GGTATATCCTCAAACGGTTC+AGG | - | chr1_2:68187494-68187513 | Msa0087290:intron | 45.0% | |
| AGGAAGGATACACATCTCGT+AGG | - | chr1_2:68187541-68187560 | Msa0087290:CDS | 45.0% | |
| GGAAGGATACACATCTCGTA+GGG | - | chr1_2:68187542-68187561 | Msa0087290:CDS | 45.0% | |
| GAAGGATACACATCTCGTAG+GGG | - | chr1_2:68187543-68187562 | Msa0087290:CDS | 45.0% | |
| AAGGATACACATCTCGTAGG+GGG | - | chr1_2:68187544-68187563 | Msa0087290:CDS | 45.0% | |
| TAGGGGGAGGAAGAGAAAAA+TGG | - | chr1_2:68187560-68187579 | Msa0087290:CDS | 45.0% | |
| AGGGGGAGGAAGAGAAAAAT+GGG | - | chr1_2:68187561-68187580 | Msa0087290:CDS | 45.0% | |
| ! | GGTTTGATGGAAGGCCATTT+TGG | + | chr1_2:68187612-68187631 | None:intergenic | 45.0% |
| GGCATTCATTGAAACTGCTG+AGG | - | chr1_2:68187797-68187816 | Msa0087290:intron | 45.0% | |
| CTATAAGCTTCACCTTTCGC+TGG | + | chr1_2:68187855-68187874 | None:intergenic | 45.0% | |
| !! | GTTTATTTGAGTGGTGGACC+TGG | - | chr1_2:68188853-68188872 | Msa0087290:intron | 45.0% |
| ! | GCCTTGGATTTAACTTCACC+AGG | + | chr1_2:68188874-68188893 | None:intergenic | 45.0% |
| GGAGGAGAAACAGTCTTCTA+TGG | - | chr1_2:68188943-68188962 | Msa0087290:intron | 45.0% | |
| TTACAGGTTGCTCCCATTGA+AGG | - | chr1_2:68189094-68189113 | Msa0087290:intron | 45.0% | |
| TACAGGTTGCTCCCATTGAA+GGG | - | chr1_2:68189095-68189114 | Msa0087290:intron | 45.0% | |
| !! | AAGAGTGCCATCCCTTCAAT+GGG | + | chr1_2:68189109-68189128 | None:intergenic | 45.0% |
| ATGGCACTCTTGCACATTCA+TGG | - | chr1_2:68189118-68189137 | Msa0087290:intron | 45.0% | |
| AAACTCACACACAGAAGTGG+AGG | - | chr1_2:68189517-68189536 | Msa0087290:intron | 45.0% | |
| CAACAGAGCCCGAAATTGTT+AGG | + | chr1_2:68189576-68189595 | None:intergenic | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | - | chr1_2:68189593-68189612 | Msa0087290:intron | 45.0% | |
| AGGCAAAAGCGGAACAAAAG+CGG | - | chr1_2:68189660-68189679 | Msa0087290:intron | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | + | chr1_2:68190075-68190094 | None:intergenic | 45.0% | |
| ATATCATAGGAAGGGCAACC+CGG | - | chr1_2:68190210-68190229 | Msa0087290:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_2:68190277-68190296 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_2:68190280-68190299 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_2:68190312-68190331 | Msa0087290:intron | 45.0% |
| TAACCTAAGAAGGACGCAAG+AGG | + | chr1_2:68190539-68190558 | None:intergenic | 45.0% | |
| !!! | ACATTTTTTTTTTTTTTTTT+TGG | - | chr1_2:68189466-68189485 | Msa0087290:intron | 5.0% |
| TTTGCACGTAGCTGCATCAC+GGG | + | chr1_2:68186647-68186666 | None:intergenic | 50.0% | |
| GCTGAGCGTATGCAACAAAG+TGG | - | chr1_2:68186724-68186743 | Msa0087290:intron | 50.0% | |
| AGCGTATGCAACAAAGTGGG+TGG | - | chr1_2:68186728-68186747 | Msa0087290:intron | 50.0% | |
| TAGTGCTCACTCAATGGGGA+GGG | - | chr1_2:68186952-68186971 | Msa0087290:intron | 50.0% | |
| GTTACCCTCCTCTTGTCTCA+TGG | + | chr1_2:68187097-68187116 | None:intergenic | 50.0% | |
| !! | CAAAGGAGCATCTCGATGAC+CGG | - | chr1_2:68187175-68187194 | Msa0087290:three_prime_UTR | 50.0% |
| !! | GATGGAAGGCCATTTTGGGT+CGG | + | chr1_2:68187607-68187626 | None:intergenic | 50.0% |
| GGAAGTTTAGGTCCAGCGAA+AGG | - | chr1_2:68187840-68187859 | Msa0087290:intron | 50.0% | |
| ATTCGAGGGAAAGCTGCTGT+AGG | - | chr1_2:68187963-68187982 | Msa0087290:intron | 50.0% | |
| !! | CAAGAGTGCCATCCCTTCAA+TGG | + | chr1_2:68189110-68189129 | None:intergenic | 50.0% |
| ! | ACACACAGAAGTGGAGGTAC+CGG | - | chr1_2:68189523-68189542 | Msa0087290:intron | 50.0% |
| GGCATCCGGCCTAACAATTT+CGG | - | chr1_2:68189564-68189583 | Msa0087290:intron | 50.0% | |
| GCATCCGGCCTAACAATTTC+GGG | - | chr1_2:68189565-68189584 | Msa0087290:intron | 50.0% | |
| AGAGCCCGAAATTGTTAGGC+CGG | + | chr1_2:68189572-68189591 | None:intergenic | 50.0% | |
| TCGGGCTCTGTTGTCAATAG+CGG | - | chr1_2:68189583-68189602 | Msa0087290:intron | 50.0% | |
| GGCAAAAGCGGAACAAAAGC+GGG | - | chr1_2:68189661-68189680 | Msa0087290:intron | 50.0% | |
| ! | GGCATTTTGCCAGTTGAGCT+AGG | - | chr1_2:68190099-68190118 | Msa0087290:intron | 50.0% |
| TCCAGAAGTCCTAGCTCAAC+TGG | + | chr1_2:68190111-68190130 | None:intergenic | 50.0% | |
| GTCTTGCAGTGTTCAGGGTA+TGG | + | chr1_2:68190597-68190616 | None:intergenic | 50.0% | |
| AGAGATATTGGGGGAGGGTG+TGG | - | chr1_2:68185828-68185847 | Msa0087290:three_prime_UTR | 55.0% | |
| ! | GCTCTTGGTGGCATGATCTG+TGG | - | chr1_2:68186420-68186439 | Msa0087290:intron | 55.0% |
| TTGCACGTAGCTGCATCACG+GGG | + | chr1_2:68186646-68186665 | None:intergenic | 55.0% | |
| CTAGTGCTCACTCAATGGGG+AGG | - | chr1_2:68186951-68186970 | Msa0087290:intron | 55.0% | |
| ! | GGCGGTCTGAAATCGAAGAG+AGG | - | chr1_2:68187473-68187492 | Msa0087290:intron | 55.0% |
| GATACACATCTCGTAGGGGG+AGG | - | chr1_2:68187547-68187566 | Msa0087290:CDS | 55.0% | |
| GGTTGCTCCCATTGAAGGGA+TGG | - | chr1_2:68189099-68189118 | Msa0087290:intron | 55.0% | |
| !! | CACACAGAAGTGGAGGTACC+GGG | - | chr1_2:68189524-68189543 | Msa0087290:intron | 55.0% |
| !! | ACACAGAAGTGGAGGTACCG+GGG | - | chr1_2:68189525-68189544 | Msa0087290:intron | 55.0% |
| TTAGGCCGGATGCCATAACC+GGG | + | chr1_2:68189558-68189577 | None:intergenic | 55.0% | |
| GTTAGGCCGGATGCCATAAC+CGG | + | chr1_2:68189559-68189578 | None:intergenic | 55.0% | |
| ! | CTTTTGCCTAACGCGCGACT+CGG | + | chr1_2:68189649-68189668 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGCAAAAG+CGG | - | chr1_2:68189649-68189668 | Msa0087290:intron | 55.0% | |
| GGAACAAAAGCGGGTCAACG+CGG | - | chr1_2:68189670-68189689 | Msa0087290:intron | 55.0% | |
| GAACAAAAGCGGGTCAACGC+GGG | - | chr1_2:68189671-68189690 | Msa0087290:intron | 55.0% | |
| ! | GCAGGCGCTTTTACATGACG+CGG | + | chr1_2:68190002-68190021 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr1_2:68190034-68190053 | Msa0087290:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr1_2:68190035-68190054 | Msa0087290:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | + | chr1_2:68190044-68190063 | None:intergenic | 55.0% | |
| GCCAGTTGAGCTAGGACTTC+TGG | - | chr1_2:68190107-68190126 | Msa0087290:intron | 55.0% | |
| CTGCCTCTTGCGTCCTTCTT+AGG | - | chr1_2:68190533-68190552 | Msa0087290:intron | 55.0% | |
| ! | GATATTGGGGGAGGGTGTGG+AGG | - | chr1_2:68185831-68185850 | Msa0087290:three_prime_UTR | 60.0% |
| GTCGCTCCCTGAACCGTTTG+AGG | + | chr1_2:68187504-68187523 | None:intergenic | 60.0% | |
| CATAACCGGGGTTCGAACCC+CGG | + | chr1_2:68189545-68189564 | None:intergenic | 60.0% | |
| CGAACCCCGGTTATGGCATC+CGG | - | chr1_2:68189550-68189569 | Msa0087290:intron | 60.0% | |
| TAGGCCGGATGCCATAACCG+GGG | + | chr1_2:68189557-68189576 | None:intergenic | 60.0% | |
| !!! | GTTGACCCGCTTTTTGCCCG+CGG | + | chr1_2:68189711-68189730 | None:intergenic | 60.0% |
| GGGCAAAAAGCGGGTCAACG+CGG | - | chr1_2:68189712-68189731 | Msa0087290:intron | 60.0% | |
| GGCAAAAAGCGGGTCAACGC+GGG | - | chr1_2:68189713-68189732 | Msa0087290:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | - | chr1_2:68189723-68189742 | Msa0087290:intron | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | - | chr1_2:68189724-68189743 | Msa0087290:intron | 60.0% | |
| AATTGACGCGGCGCGGTAAG+CGG | + | chr1_2:68190032-68190051 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr1_2:68190039-68190058 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr1_2:68190036-68190055 | Msa0087290:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr1_2:68190039-68190058 | Msa0087290:intron | 60.0% |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr1_2:68190232-68190251 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | - | chr1_2:68190236-68190255 | Msa0087290:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | - | chr1_2:68190237-68190256 | Msa0087290:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_2:68190264-68190283 | None:intergenic | 60.0% |
| CACGTAGCTGCATCACGGGG+AGG | + | chr1_2:68186643-68186662 | None:intergenic | 65.0% | |
| !! | AGGTACCGGGGTTCGAACCC+CGG | - | chr1_2:68189537-68189556 | Msa0087290:intron | 65.0% |
| CGGGGTTCGAACCCCGGTTA+TGG | - | chr1_2:68189543-68189562 | Msa0087290:intron | 65.0% | |
| GGGTCAACGCGGGCGAAAAG+CGG | - | chr1_2:68189681-68189700 | Msa0087290:intron | 65.0% | |
| GGTCAACGCGGGCGAAAAGC+GGG | - | chr1_2:68189682-68189701 | Msa0087290:intron | 65.0% | |
| GGGTCACCGCGGGCAAAAAG+CGG | - | chr1_2:68189702-68189721 | Msa0087290:intron | 65.0% | |
| GGTCACCGCGGGCAAAAAGC+GGG | - | chr1_2:68189703-68189722 | Msa0087290:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | + | chr1_2:68190031-68190050 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | + | chr1_2:68190070-68190089 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr1_2:68190231-68190250 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr1_2:68190248-68190267 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr1_2:68190249-68190268 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr1_2:68190248-68190267 | Msa0087290:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr1_2:68190249-68190268 | Msa0087290:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_2:68190262-68190281 | Msa0087290:intron | 65.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | + | chr1_2:68189629-68189648 | None:intergenic | 70.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | - | chr1_2:68189640-68189659 | Msa0087290:intron | 70.0% | |
| GGGCGAAAAGCGGGTCACCG+CGG | - | chr1_2:68189691-68189710 | Msa0087290:intron | 70.0% | |
| GGCGAAAAGCGGGTCACCGC+GGG | - | chr1_2:68189692-68189711 | Msa0087290:intron | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr1_2:68190242-68190261 | Msa0087290:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr1_2:68190243-68190262 | Msa0087290:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr1_2:68190247-68190266 | Msa0087290:intron | 70.0% | |
| ! | GCGGTAAGCGGGCGCGACGC+AGG | + | chr1_2:68190020-68190039 | None:intergenic | 80.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | + | chr1_2:68190065-68190084 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 68185785 | 68190700 | 68185785 | ID=Msa0087290;Name=Msa0087290 |
| chr1_2 | mRNA | 68185785 | 68190700 | 68185785 | ID=Msa0087290-mRNA-1;Parent=Msa0087290;Name=Msa0087290-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.4|0.8|0.75|0.6|5|274|207 |
| chr1_2 | exon | 68185785 | 68185855 | 68185785 | ID=Msa0087290-mRNA-1:exon:23254;Parent=Msa0087290-mRNA-1 |
| chr1_2 | exon | 68187060 | 68187385 | 68187060 | ID=Msa0087290-mRNA-1:exon:23253;Parent=Msa0087290-mRNA-1 |
| chr1_2 | exon | 68187495 | 68187766 | 68187495 | ID=Msa0087290-mRNA-1:exon:23252;Parent=Msa0087290-mRNA-1 |
| chr1_2 | exon | 68188501 | 68188720 | 68188501 | ID=Msa0087290-mRNA-1:exon:23251;Parent=Msa0087290-mRNA-1 |
| chr1_2 | exon | 68190692 | 68190700 | 68190692 | ID=Msa0087290-mRNA-1:exon:23250;Parent=Msa0087290-mRNA-1 |
| chr1_2 | CDS | 68190692 | 68190700 | 68190692 | ID=Msa0087290-mRNA-1:cds;Parent=Msa0087290-mRNA-1 |
| chr1_2 | CDS | 68188501 | 68188720 | 68188501 | ID=Msa0087290-mRNA-1:cds;Parent=Msa0087290-mRNA-1 |
| chr1_2 | CDS | 68187495 | 68187766 | 68187495 | ID=Msa0087290-mRNA-1:cds;Parent=Msa0087290-mRNA-1 |
| chr1_2 | CDS | 68187263 | 68187385 | 68187263 | ID=Msa0087290-mRNA-1:cds;Parent=Msa0087290-mRNA-1 |
| chr1_2 | three_prime_UTR | 68187060 | 68187262 | 68187060 | ID=Msa0087290-mRNA-1:three_prime_utr;Parent=Msa0087290-mRNA-1 |
| chr1_2 | three_prime_UTR | 68185785 | 68185855 | 68185785 | ID=Msa0087290-mRNA-1:three_prime_utr;Parent=Msa0087290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
