AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340810 MtrunA17_Chr2g0332591 96.835 158 5 0 1 158 1 158 3.30e-114 320
Msa0340810 MtrunA17_Chr4g0047431 44.715 123 65 1 34 153 261 383 9.71e-30 112
Msa0340810 MtrunA17_Chr4g0047431 45.545 101 55 0 53 153 154 254 1.25e-28 109
Msa0340810 MtrunA17_Chr4g0047431 46.739 92 48 1 63 153 400 491 3.63e-25 100
Msa0340810 MtrunA17_Chr4g0006981 36.458 96 58 1 55 147 212 307 4.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340810 AT3G15660.2 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0340810 AT3G15660.1 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0340810 AT4G04950.1 46.535 101 54 0 54 154 152 252 1.48e-30 115
Msa0340810 AT4G04950.1 46.226 106 55 1 50 153 276 381 3.46e-27 105
Msa0340810 AT4G04950.1 45.000 100 55 0 54 153 389 488 3.48e-26 103
Msa0340810 AT3G54900.1 41.525 118 64 2 42 155 55 171 5.89e-29 105
Msa0340810 AT2G38270.1 41.000 100 56 1 55 151 193 292 3.00e-21 87.8

Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 2_4:-62226944 Msa0340810:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 2_4:+62225345 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 2_4:-62224482 Msa0340810:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 2_4:-62226863 Msa0340810:CDS
TCACATTATTATTCTAAATC+AGG 0.295010 2_4:+62224066 None:intergenic
CCCTTCATGTAAATCATAAC+AGG 0.387480 2_4:+62226700 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 2_4:+62226673 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 2_4:+62226934 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 2_4:-62226701 Msa0340810:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 2_4:-62226834 Msa0340810:intron
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 2_4:-62225353 Msa0340810:CDS
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 2_4:-62224355 Msa0340810:intron
CACATTATTATTCTAAATCA+GGG 0.479372 2_4:+62224067 None:intergenic
AAGCAGTAAAAGCACAACTA+AGG 0.522251 2_4:-62224309 Msa0340810:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 2_4:-62224479 Msa0340810:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 2_4:-62224303 Msa0340810:three_prime_UTR
ATGAAAACTTGTGGAAATGT+TGG 0.528223 2_4:+62224500 None:intergenic
ACGCAGACAACTTCGAACTA+AGG 0.530669 2_4:+62228325 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 2_4:-62226700 Msa0340810:CDS
ATACATCAGAAGTGCTTCCA+TGG 0.552720 2_4:-62228282 Msa0340810:exon
AGCGATTCCCTTGAAAAGAA+TGG 0.556100 2_4:+62228256 None:intergenic
AAAATGCTGTAAAAGCCTAC+AGG 0.564696 2_4:-62225305 Msa0340810:intron
TATTGTTCTTAGTATGCACC+AGG 0.565729 2_4:-62224450 Msa0340810:intron
AAAAGCACAACTAAGGTGAT+GGG 0.568881 2_4:-62224302 Msa0340810:three_prime_UTR
TGGAATGAGATACACAACTA+AGG 0.585500 2_4:-62226924 Msa0340810:CDS
TAATAATGTGACTAGAGCAC+AGG 0.596440 2_4:-62224054 None:intergenic
CTTGAAAAGAATGGTCGCCA+TGG 0.597220 2_4:+62228265 None:intergenic
GGTGATGGGATTTAAAAGAG+AGG 0.605653 2_4:-62224288 Msa0340810:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 2_4:-62226728 Msa0340810:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 2_4:+62226665 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 2_4:+62224491 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 2_4:-62226676 Msa0340810:CDS
GGTTGGAAAGCTTACACGTG+TGG 0.644303 2_4:+62228220 None:intergenic
TTTGAAGTCATCATGTGTGT+CGG 0.650291 2_4:+62226889 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 2_4:+62224256 None:intergenic
AAGCACTTCTGATGTATGTG+AGG 0.703909 2_4:+62228288 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 2_4:+62226664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATATTTTGTTA+TGG + chr2_4:62224609-62224628 None:intergenic 10.0%
!!! AATGTTAATTTTAAAAAACT+AGG + chr2_4:62227246-62227265 None:intergenic 10.0%
!! ATGAAAAAAAATTAAGTTAA+AGG - chr2_4:62227277-62227296 Msa0340810:intron 10.0%
!!! TTCTTCAAATATGATTTTTA+AGG - chr2_4:62224068-62224087 Msa0340810:three_prime_UTR 15.0%
!! AAAAAAGAAGAAGAAAATTA+GGG + chr2_4:62224281-62224300 None:intergenic 15.0%
!! AAAAAAAGAAGAAGAAAATT+AGG + chr2_4:62224282-62224301 None:intergenic 15.0%
!! TTTATTTATCAGATTGAAAT+GGG - chr2_4:62224375-62224394 Msa0340810:intron 15.0%
!! GAATTATGTTAATGTTAAAA+TGG - chr2_4:62224424-62224443 Msa0340810:intron 15.0%
!! GGTAAATTTAAAAAGAAAAA+GGG + chr2_4:62225044-62225063 None:intergenic 15.0%
!! TGGTAAATTTAAAAAGAAAA+AGG + chr2_4:62225045-62225064 None:intergenic 15.0%
!!! TTTTAGTGTTATGATTTAAA+TGG - chr2_4:62225418-62225437 Msa0340810:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG - chr2_4:62225828-62225847 Msa0340810:intron 15.0%
!!! GAAACTAAAACAATTTTAAA+GGG - chr2_4:62226842-62226861 Msa0340810:CDS 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG - chr2_4:62226966-62226985 Msa0340810:intron 15.0%
!! AAATAAAAAACAATAAAGCA+AGG + chr2_4:62228338-62228357 None:intergenic 15.0%
!! CTGATAAATAAAGAAAAGAA+AGG + chr2_4:62224367-62224386 None:intergenic 20.0%
!!! CTTTATTTATCAGATTGAAA+TGG - chr2_4:62224374-62224393 Msa0340810:intron 20.0%
!! TTATGTTAATGTTAAAATGG+AGG - chr2_4:62224427-62224446 Msa0340810:intron 20.0%
!!! AAATCTTGAAAAGCTTTTTT+AGG - chr2_4:62224521-62224540 Msa0340810:intron 20.0%
!! ATAATATGCAATTATGCTAA+AGG + chr2_4:62224577-62224596 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG - chr2_4:62224759-62224778 Msa0340810:intron 20.0%
!!! CTTTATTTTATCTTTTGCTA+CGG + chr2_4:62225172-62225191 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG + chr2_4:62225602-62225621 None:intergenic 20.0%
!! ACTAATAAAATTGAGAATTC+TGG - chr2_4:62225602-62225621 Msa0340810:intron 20.0%
!!! TTTGGTTTTATTATGTTGAA+TGG - chr2_4:62226770-62226789 Msa0340810:intron 20.0%
!!! GGAAACTAAAACAATTTTAA+AGG - chr2_4:62226841-62226860 Msa0340810:CDS 20.0%
!!! AAAACACATTTGAAACTTAA+AGG + chr2_4:62226945-62226964 None:intergenic 20.0%
!! TCTGATCTTCATAATATATT+TGG + chr2_4:62227400-62227419 None:intergenic 20.0%
!!! AGAATTTTGATATCCTTTAA+TGG - chr2_4:62227514-62227533 Msa0340810:intron 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG - chr2_4:62227769-62227788 Msa0340810:intron 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG + chr2_4:62227865-62227884 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG + chr2_4:62227884-62227903 None:intergenic 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG + chr2_4:62227885-62227904 None:intergenic 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG - chr2_4:62228263-62228282 Msa0340810:CDS 20.0%
!! CACATTATTATTCTAAATCA+GGG + chr2_4:62228401-62228420 None:intergenic 20.0%
!! TCACATTATTATTCTAAATC+AGG + chr2_4:62228402-62228421 None:intergenic 20.0%
!! TACATTTTATACCCAAAAAC+AGG - chr2_4:62224098-62224117 Msa0340810:three_prime_UTR 25.0%
!!! GAAAATTAGGGTTTGTTTTA+GGG + chr2_4:62224269-62224288 None:intergenic 25.0%
!!! AGAAAATTAGGGTTTGTTTT+AGG + chr2_4:62224270-62224289 None:intergenic 25.0%
!! TTTTTCCATTTTACGGTATT+GGG - chr2_4:62224329-62224348 Msa0340810:CDS 25.0%
! AAAGAAAAGAAAGGAAAGAA+AGG + chr2_4:62224358-62224377 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAATT+TGG + chr2_4:62224853-62224872 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr2_4:62224918-62224937 None:intergenic 25.0%
!!! GTATGTTCAGTTTCATTTTT+TGG + chr2_4:62224968-62224987 None:intergenic 25.0%
!! ATTGTGTTTTCTGTATGTAA+CGG - chr2_4:62225470-62225489 Msa0340810:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr2_4:62226291-62226310 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG + chr2_4:62226327-62226346 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG + chr2_4:62226328-62226347 None:intergenic 25.0%
! AAACTATACGAGAAACTATT+AGG - chr2_4:62226574-62226593 Msa0340810:intron 25.0%
!! GTTTATGTAATCTCATGTTT+TGG - chr2_4:62226752-62226771 Msa0340810:intron 25.0%
!!! ATTTTAAAGGGTTAGTACAT+AGG - chr2_4:62226854-62226873 Msa0340810:CDS 25.0%
! GATCATTATGATTAAATTGC+AGG + chr2_4:62226886-62226905 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG + chr2_4:62226992-62227011 None:intergenic 25.0%
! ACACGATTGATATTTGAAAA+TGG + chr2_4:62227493-62227512 None:intergenic 25.0%
! TTGAATTTCATAGCCATTAA+AGG + chr2_4:62227530-62227549 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG - chr2_4:62227530-62227549 Msa0340810:intron 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG - chr2_4:62227970-62227989 Msa0340810:intron 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG - chr2_4:62227971-62227990 Msa0340810:intron 25.0%
! GGTGTGAAATATTGTTAAAT+AGG + chr2_4:62228090-62228109 None:intergenic 25.0%
! AAAAGCATGGAACTTTATGA+TGG + chr2_4:62224313-62224332 None:intergenic 30.0%
!!! TCCATGCTTTTTCCATTTTA+CGG - chr2_4:62224322-62224341 Msa0340810:exon 30.0%
! CTTTTTCCATTTTACGGTAT+TGG - chr2_4:62224328-62224347 Msa0340810:CDS 30.0%
TACGATAGCAAAACAATTTC+AGG + chr2_4:62224468-62224487 None:intergenic 30.0%
TTCCTATGTGTTTGATTATG+TGG - chr2_4:62224674-62224693 Msa0340810:intron 30.0%
CAATTCTGTAAGTTTCATCA+TGG - chr2_4:62224722-62224741 Msa0340810:intron 30.0%
GTTAGAATCAATTCTTCTAG+AGG - chr2_4:62224867-62224886 Msa0340810:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG - chr2_4:62224937-62224956 Msa0340810:intron 30.0%
!!! TGTTCAGTTTCATTTTTTGG+AGG + chr2_4:62224965-62224984 None:intergenic 30.0%
GTCTCATTCATATTCTACTA+AGG - chr2_4:62225067-62225086 Msa0340810:intron 30.0%
TTCATATTCTACTAAGGCAA+TGG - chr2_4:62225073-62225092 Msa0340810:intron 30.0%
! TAATTTGCAGCTTATAGCAT+AGG - chr2_4:62225110-62225129 Msa0340810:intron 30.0%
TAACTTATGAAGACAGCTTA+TGG + chr2_4:62225215-62225234 None:intergenic 30.0%
TGTGGAAATAAGCTGAAAAT+AGG - chr2_4:62225247-62225266 Msa0340810:intron 30.0%
TCAAATCAGTCAATTCAAAC+AGG - chr2_4:62225342-62225361 Msa0340810:CDS 30.0%
CTAACTAGTTCCTGTTATTA+TGG - chr2_4:62225521-62225540 Msa0340810:intron 30.0%
GTATCTCATTCCATAATAAC+AGG + chr2_4:62225534-62225553 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG - chr2_4:62225631-62225650 Msa0340810:intron 30.0%
TCTACATGAGAATTCTATGA+AGG - chr2_4:62225676-62225695 Msa0340810:intron 30.0%
CTACATGAGAATTCTATGAA+GGG - chr2_4:62225677-62225696 Msa0340810:intron 30.0%
!!! TGAAGGGTTTATTGTTTTGA+TGG - chr2_4:62225693-62225712 Msa0340810:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG - chr2_4:62225728-62225747 Msa0340810:intron 30.0%
TAATAATGTACAGGATGTCA+AGG - chr2_4:62225737-62225756 Msa0340810:intron 30.0%
TCCTGTTATGATTTACATGA+AGG - chr2_4:62225764-62225783 Msa0340810:intron 30.0%
CCTGTTATGATTTACATGAA+GGG - chr2_4:62225765-62225784 Msa0340810:intron 30.0%
ATATAATTTCTCAGGTAGCA+AGG + chr2_4:62225882-62225901 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG + chr2_4:62225890-62225909 None:intergenic 30.0%
GAAATTATATCCTCTGAATC+TGG - chr2_4:62225892-62225911 Msa0340810:intron 30.0%
TGTGCTTATGTGATTTGAAA+AGG - chr2_4:62225965-62225984 Msa0340810:intron 30.0%
GCTCTATCAAAAACCATATT+TGG - chr2_4:62226109-62226128 Msa0340810:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr2_4:62226149-62226168 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG + chr2_4:62226224-62226243 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+CGG - chr2_4:62226225-62226244 Msa0340810:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr2_4:62226295-62226314 Msa0340810:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG + chr2_4:62226326-62226345 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG + chr2_4:62226329-62226348 None:intergenic 30.0%
!! CCACTTTTCTACAAACATTA+TGG - chr2_4:62226326-62226345 Msa0340810:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG - chr2_4:62226354-62226373 Msa0340810:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG - chr2_4:62226355-62226374 Msa0340810:intron 30.0%
! TACCATCTTTTCTACTATAG+GGG + chr2_4:62226439-62226458 None:intergenic 30.0%
! CTACCATCTTTTCTACTATA+GGG + chr2_4:62226440-62226459 None:intergenic 30.0%
! TCTACCATCTTTTCTACTAT+AGG + chr2_4:62226441-62226460 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG - chr2_4:62226512-62226531 Msa0340810:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG + chr2_4:62226570-62226589 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG - chr2_4:62226578-62226597 Msa0340810:intron 30.0%
! AATGAGTTGGAGAAAAAACA+TGG - chr2_4:62226612-62226631 Msa0340810:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr2_4:62226632-62226651 Msa0340810:intron 30.0%
ACATGAGATTACATAAACAC+AGG + chr2_4:62226750-62226769 None:intergenic 30.0%
TTGAAGAGGATGAAATCAAA+AGG + chr2_4:62226814-62226833 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG - chr2_4:62226814-62226833 Msa0340810:intron 30.0%
TAACCTGCACAAACTTATAT+AGG - chr2_4:62226913-62226932 Msa0340810:CDS 30.0%
!! TGAATATGACTTAGCTTTAC+TGG - chr2_4:62227037-62227056 Msa0340810:intron 30.0%
AAAATGTTCCTAGCACTTAA+AGG + chr2_4:62227123-62227142 None:intergenic 30.0%
! TTTACAGCATTTTTCACTTC+AGG + chr2_4:62227153-62227172 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG + chr2_4:62227564-62227583 None:intergenic 30.0%
GATTTCAACATATCTAGTTG+TGG - chr2_4:62227654-62227673 Msa0340810:intron 30.0%
ACATATATCAACAACGTACA+AGG + chr2_4:62227708-62227727 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG - chr2_4:62227774-62227793 Msa0340810:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG - chr2_4:62227825-62227844 Msa0340810:intron 30.0%
ATGAAAACTTGTGGAAATGT+TGG + chr2_4:62227968-62227987 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG - chr2_4:62227983-62228002 Msa0340810:intron 30.0%
AATTGATCAACTCTTGCAAT+GGG + chr2_4:62228047-62228066 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG + chr2_4:62228048-62228067 None:intergenic 30.0%
!!! ATTAGGGTTTGTTTTAGGGT+TGG + chr2_4:62224265-62224284 None:intergenic 35.0%
ACCGTAAAATGGAAAAAGCA+TGG + chr2_4:62224326-62224345 None:intergenic 35.0%
!!! AAGCTTTTTTAGGCTCTGTT+TGG - chr2_4:62224531-62224550 Msa0340810:intron 35.0%
CACCACATAATCAAACACAT+AGG + chr2_4:62224679-62224698 None:intergenic 35.0%
AGAGGCAAAATCAATTATCC+TGG - chr2_4:62224885-62224904 Msa0340810:intron 35.0%
GCAAAATCAATTATCCTGGA+GGG - chr2_4:62224889-62224908 Msa0340810:intron 35.0%
! TGAGTGGCAATATTCACTTT+TGG + chr2_4:62225014-62225033 None:intergenic 35.0%
GAAAAAGGGCTAAAATTGAG+TGG + chr2_4:62225030-62225049 None:intergenic 35.0%
GTAGAATATGAATGAGACAG+TGG + chr2_4:62225065-62225084 None:intergenic 35.0%
TATTCTACTAAGGCAATGGT+TGG - chr2_4:62225077-62225096 Msa0340810:intron 35.0%
ATTCTACTAAGGCAATGGTT+GGG - chr2_4:62225078-62225097 Msa0340810:intron 35.0%
TAATCACTTGAGATTGTCTG+CGG + chr2_4:62225307-62225326 None:intergenic 35.0%
! TTTTCTGTATGTAACGGTGT+TGG - chr2_4:62225476-62225495 Msa0340810:intron 35.0%
TGGAATGAGATACACAACTA+AGG - chr2_4:62225541-62225560 Msa0340810:intron 35.0%
! TTTGAAGTCATCATGTGTGT+CGG + chr2_4:62225579-62225598 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG + chr2_4:62225768-62225787 None:intergenic 35.0%
!!! AATCTGGACTAGTCTTTTCA+TGG - chr2_4:62225908-62225927 Msa0340810:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG + chr2_4:62226105-62226124 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr2_4:62226125-62226144 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr2_4:62226144-62226163 Msa0340810:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG + chr2_4:62226158-62226177 None:intergenic 35.0%
CTTTCTAATGGTTTCTCTAC+TGG - chr2_4:62226156-62226175 Msa0340810:intron 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG - chr2_4:62226166-62226185 Msa0340810:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr2_4:62226277-62226296 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr2_4:62226282-62226301 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr2_4:62226302-62226321 None:intergenic 35.0%
ACGACATTAGATAGAGAGTT+GGG - chr2_4:62226409-62226428 Msa0340810:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG - chr2_4:62226434-62226453 Msa0340810:intron 35.0%
AGATGGTAGAAACTAGACAT+AGG - chr2_4:62226451-62226470 Msa0340810:intron 35.0%
AAACTAGACATAGGTGGTTT+CGG - chr2_4:62226460-62226479 Msa0340810:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG - chr2_4:62226496-62226515 Msa0340810:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG - chr2_4:62226599-62226618 Msa0340810:intron 35.0%
AGGATGAAATCAAAAGGCAA+GGG + chr2_4:62226808-62226827 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG + chr2_4:62226919-62226938 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG - chr2_4:62226919-62226938 Msa0340810:CDS 35.0%
! TAGCTTTACTGGATGATGAA+TGG - chr2_4:62227048-62227067 Msa0340810:intron 35.0%
AAAATGCTGTAAAAGCCTAC+AGG - chr2_4:62227160-62227179 Msa0340810:intron 35.0%
TTGATATATGTACATGCGTC+TGG - chr2_4:62227717-62227736 Msa0340810:intron 35.0%
TCTCCCTTAATGAAAACTTG+TGG + chr2_4:62227977-62227996 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG - chr2_4:62227986-62228005 Msa0340810:intron 35.0%
TATTGTTCTTAGTATGCACC+AGG - chr2_4:62228015-62228034 Msa0340810:intron 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG + chr2_4:62228157-62228176 None:intergenic 35.0%
! AAGCAGTAAAAGCACAACTA+AGG - chr2_4:62228156-62228175 Msa0340810:intron 35.0%
! TAAAAGCACAACTAAGGTGA+TGG - chr2_4:62228162-62228181 Msa0340810:intron 35.0%
! AAAAGCACAACTAAGGTGAT+GGG - chr2_4:62228163-62228182 Msa0340810:intron 35.0%
!! TCTCTCTCTCTCCTGTTTTT+GGG + chr2_4:62224112-62224131 None:intergenic 40.0%
! ATCTCTCTCTCTCCTGTTTT+TGG + chr2_4:62224113-62224132 None:intergenic 40.0%
AAGCACTTCTGATGTATGTG+AGG + chr2_4:62224180-62224199 None:intergenic 40.0%
!! ATACATCAGAAGTGCTTCCA+TGG - chr2_4:62224183-62224202 Msa0340810:three_prime_UTR 40.0%
! ATGGCGACCATTCTTTTCAA+GGG - chr2_4:62224202-62224221 Msa0340810:three_prime_UTR 40.0%
AGCGATTCCCTTGAAAAGAA+TGG + chr2_4:62224212-62224231 None:intergenic 40.0%
GGATACCCAATACCGTAAAA+TGG + chr2_4:62224337-62224356 None:intergenic 40.0%
TTAGGCTCTGTTTGGATGAA+CGG - chr2_4:62224539-62224558 Msa0340810:intron 40.0%
GGCAAAATCAATTATCCTGG+AGG - chr2_4:62224888-62224907 Msa0340810:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + chr2_4:62224944-62224963 None:intergenic 40.0%
CATACATTGCCACTCAAGTT+TGG - chr2_4:62224983-62225002 Msa0340810:intron 40.0%
!! GTGGCAATATTCACTTTTGG+AGG + chr2_4:62225011-62225030 None:intergenic 40.0%
GCTGTCTTCATAAGTTATCC+TGG - chr2_4:62225218-62225237 Msa0340810:intron 40.0%
AAGTTATCCTGGAGATCTTG+TGG - chr2_4:62225229-62225248 Msa0340810:intron 40.0%
CTTATTTCCACAAGATCTCC+AGG + chr2_4:62225239-62225258 None:intergenic 40.0%
AATCACTTGAGATTGTCTGC+GGG + chr2_4:62225306-62225325 None:intergenic 40.0%
!! CAGGCACTAAGATTGACTTT+TGG - chr2_4:62225361-62225380 Msa0340810:intron 40.0%
GAGAACTAAATCCACACTGT+GGG + chr2_4:62225803-62225822 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG + chr2_4:62225804-62225823 None:intergenic 40.0%
! AAAGACTAGTCCAGATTCAG+AGG + chr2_4:62225905-62225924 None:intergenic 40.0%
TTGAAAAGGTAGACTCAGAG+TGG - chr2_4:62225979-62225998 Msa0340810:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr2_4:62226137-62226156 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr2_4:62226196-62226215 None:intergenic 40.0%
GAGAAGAGTCAGGTTAAAAG+AGG + chr2_4:62226202-62226221 None:intergenic 40.0%
AGATCAAATGGAGAAGAGTC+AGG + chr2_4:62226212-62226231 None:intergenic 40.0%
TCTTCTAACAACGGCATCTA+TGG - chr2_4:62226234-62226253 Msa0340810:intron 40.0%
CTTCTAACAACGGCATCTAT+GGG - chr2_4:62226235-62226254 Msa0340810:intron 40.0%
!! CTGATGGGTTATTGACTAGA+CGG - chr2_4:62226370-62226389 Msa0340810:intron 40.0%
!! TGATGGGTTATTGACTAGAC+GGG - chr2_4:62226371-62226390 Msa0340810:intron 40.0%
GACGACATTAGATAGAGAGT+TGG - chr2_4:62226408-62226427 Msa0340810:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG - chr2_4:62226410-62226429 Msa0340810:intron 40.0%
TGGTAGAAACTAGACATAGG+TGG - chr2_4:62226454-62226473 Msa0340810:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr2_4:62226682-62226701 None:intergenic 40.0%
TGTTGTTGTAGCTGATGTCA+TGG - chr2_4:62226719-62226738 Msa0340810:intron 40.0%
GAGGATGAAATCAAAAGGCA+AGG + chr2_4:62226809-62226828 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG - chr2_4:62226820-62226839 Msa0340810:intron 40.0%
! AGTTTCCTTTTCCGTTGAAG+AGG + chr2_4:62226828-62226847 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG - chr2_4:62227112-62227131 Msa0340810:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG - chr2_4:62227125-62227144 Msa0340810:intron 40.0%
GCATGAACAAACTTACCTGT+AGG + chr2_4:62227178-62227197 None:intergenic 40.0%
! ACAGGTAAGTTTGTTCATGC+TGG - chr2_4:62227178-62227197 Msa0340810:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG + chr2_4:62227941-62227960 None:intergenic 40.0%
TATTTCACACCCTTGTAGAG+TGG - chr2_4:62228099-62228118 Msa0340810:intron 40.0%
TTCAACTCACCACTCTACAA+GGG + chr2_4:62228111-62228130 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG - chr2_4:62228177-62228196 Msa0340810:intron 40.0%
ACAGATTGCATCGAACAAGT+CGG + chr2_4:62228212-62228231 None:intergenic 40.0%
ACGCAGACAACTTCGAACTA+AGG + chr2_4:62224143-62224162 None:intergenic 45.0%
CTTGAAAAGAATGGTCGCCA+TGG + chr2_4:62224203-62224222 None:intergenic 45.0%
! CATGGCGACCATTCTTTTCA+AGG - chr2_4:62224201-62224220 Msa0340810:three_prime_UTR 45.0%
TTGGAGGAACCAAACTTGAG+TGG + chr2_4:62224995-62225014 None:intergenic 45.0%
AATCCACACTGTGGGAAATC+AGG + chr2_4:62225795-62225814 None:intergenic 45.0%
AAAAGGTAGACTCAGAGTGG+AGG - chr2_4:62225982-62226001 Msa0340810:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_4:62226055-62226074 Msa0340810:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_4:62226056-62226075 Msa0340810:intron 45.0%
!! GATGGGTTATTGACTAGACG+GGG - chr2_4:62226372-62226391 Msa0340810:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG - chr2_4:62226517-62226536 Msa0340810:intron 45.0%
GAGTCAGATCACTAGAGGTA+GGG - chr2_4:62226539-62226558 Msa0340810:intron 45.0%
AGTCAGATCACTAGAGGTAG+GGG - chr2_4:62226540-62226559 Msa0340810:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_4:62226056-62226075 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr2_4:62226683-62226702 None:intergenic 45.0%
! AAGGGTTAGTACATAGGTGC+TGG - chr2_4:62226860-62226879 Msa0340810:CDS 45.0%
GTGACTGCAGAGAAAGAACA+TGG + chr2_4:62227942-62227961 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG - chr2_4:62227942-62227961 Msa0340810:intron 45.0%
TCTTGCAATGGGAACTAACC+TGG + chr2_4:62228036-62228055 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG + chr2_4:62228112-62228131 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG - chr2_4:62228110-62228129 Msa0340810:intron 45.0%
GGTTGGAAAGCTTACACGTG+TGG + chr2_4:62224248-62224267 None:intergenic 50.0%
! GACATGTTTGGTTTCCCTCC+AGG + chr2_4:62224906-62224925 None:intergenic 50.0%
GTACCTGATTTCCCACAGTG+TGG - chr2_4:62225789-62225808 Msa0340810:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_4:62226680-62226699 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_4:62226054-62226073 Msa0340810:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_4:62226060-62226079 Msa0340810:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG - chr2_4:62226482-62226501 Msa0340810:intron 50.0%
GAGAGGAGTCAGATCACTAG+AGG - chr2_4:62226534-62226553 Msa0340810:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG - chr2_4:62226538-62226557 Msa0340810:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_4:62226060-62226079 None:intergenic 50.0%
! GGTATGGTTGTGTCACTGTG+TGG - chr2_4:62227790-62227809 Msa0340810:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG - chr2_4:62227834-62227853 Msa0340810:intron 50.0%
ATTGGCAGCACCAGCATTTC+CGG + chr2_4:62227847-62227866 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_4:62226675-62226694 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_4:62226669-62226688 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_4:62226668-62226687 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2_4:62226068-62226087 Msa0340810:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_4:62226668-62226687 Msa0340810:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_4:62226669-62226688 Msa0340810:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_4:62226675-62226694 Msa0340810:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 62224057 62228430 62224057 ID=Msa0340810;Name=Msa0340810
chr2_4 mRNA 62224057 62228430 62224057 ID=Msa0340810-mRNA-1;Parent=Msa0340810;Name=Msa0340810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|266|158
chr2_4 exon 62224057 62224370 62224057 ID=Msa0340810-mRNA-1:exon:19787;Parent=Msa0340810-mRNA-1
chr2_4 exon 62224451 62224529 62224451 ID=Msa0340810-mRNA-1:exon:19786;Parent=Msa0340810-mRNA-1
chr2_4 exon 62225306 62225372 62225306 ID=Msa0340810-mRNA-1:exon:19785;Parent=Msa0340810-mRNA-1
chr2_4 exon 62226638 62226737 62226638 ID=Msa0340810-mRNA-1:exon:19784;Parent=Msa0340810-mRNA-1
chr2_4 exon 62226835 62226966 62226835 ID=Msa0340810-mRNA-1:exon:19783;Parent=Msa0340810-mRNA-1
chr2_4 exon 62228235 62228430 62228235 ID=Msa0340810-mRNA-1:exon:19782;Parent=Msa0340810-mRNA-1
chr2_4 five_prime_UTR 62228286 62228430 62228286 ID=Msa0340810-mRNA-1:five_prime_utr;Parent=Msa0340810-mRNA-1
chr2_4 CDS 62228235 62228285 62228235 ID=Msa0340810-mRNA-1:cds;Parent=Msa0340810-mRNA-1
chr2_4 CDS 62226835 62226966 62226835 ID=Msa0340810-mRNA-1:cds;Parent=Msa0340810-mRNA-1
chr2_4 CDS 62226638 62226737 62226638 ID=Msa0340810-mRNA-1:cds;Parent=Msa0340810-mRNA-1
chr2_4 CDS 62225306 62225372 62225306 ID=Msa0340810-mRNA-1:cds;Parent=Msa0340810-mRNA-1
chr2_4 CDS 62224451 62224529 62224451 ID=Msa0340810-mRNA-1:cds;Parent=Msa0340810-mRNA-1
chr2_4 CDS 62224323 62224370 62224323 ID=Msa0340810-mRNA-1:cds;Parent=Msa0340810-mRNA-1
chr2_4 three_prime_UTR 62224057 62224322 62224057 ID=Msa0340810-mRNA-1:three_prime_utr;Parent=Msa0340810-mRNA-1
Gene Sequence

>Msa0340810

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0340810

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*