AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0305890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305890 MtrunA17_Chr2g0332591 96.835 158 5 0 1 158 1 158 3.30e-114 320
Msa0305890 MtrunA17_Chr4g0047431 44.715 123 65 1 34 153 261 383 9.71e-30 112
Msa0305890 MtrunA17_Chr4g0047431 45.545 101 55 0 53 153 154 254 1.25e-28 109
Msa0305890 MtrunA17_Chr4g0047431 46.739 92 48 1 63 153 400 491 3.63e-25 100
Msa0305890 MtrunA17_Chr4g0006981 36.458 96 58 1 55 147 212 307 4.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305890 AT3G15660.2 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0305890 AT3G15660.1 63.415 164 54 3 1 158 5 168 2.52e-73 217
Msa0305890 AT4G04950.1 46.535 101 54 0 54 154 152 252 1.48e-30 115
Msa0305890 AT4G04950.1 46.226 106 55 1 50 153 276 381 3.46e-27 105
Msa0305890 AT4G04950.1 45.000 100 55 0 54 153 389 488 3.48e-26 103
Msa0305890 AT3G54900.1 41.525 118 64 2 42 155 55 171 5.89e-29 105
Msa0305890 AT2G38270.1 41.000 100 56 1 55 151 193 292 3.00e-21 87.8

Find 37 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 2_3:-63979630 Msa0305890:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 2_3:+63978031 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 2_3:-63977168 Msa0305890:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 2_3:-63979549 Msa0305890:CDS
TCACATTATTATTCTAAATC+AGG 0.295010 2_3:+63976752 None:intergenic
CCCTTCATGTAAATCATAAC+AGG 0.387480 2_3:+63979386 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 2_3:+63979359 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 2_3:+63979620 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 2_3:-63979387 Msa0305890:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 2_3:-63979520 Msa0305890:intron
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 2_3:-63978039 Msa0305890:CDS
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 2_3:-63977041 Msa0305890:intron
CACATTATTATTCTAAATCA+GGG 0.479372 2_3:+63976753 None:intergenic
AAGCAGTAAAAGCACAACTA+AGG 0.522251 2_3:-63976995 Msa0305890:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 2_3:-63977165 Msa0305890:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 2_3:-63976989 Msa0305890:three_prime_UTR
ATGAAAACTTGTGGAAATGT+TGG 0.528223 2_3:+63977186 None:intergenic
ACGCAGACAACTTCGAACTA+AGG 0.530669 2_3:+63981011 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 2_3:-63979386 Msa0305890:CDS
ATACATCAGAAGTGCTTCCA+TGG 0.552720 2_3:-63980968 Msa0305890:exon
AGCGATTCCCTTGAAAAGAA+TGG 0.556100 2_3:+63980942 None:intergenic
AAAATGCTGTAAAAGCCTAC+AGG 0.564696 2_3:-63977991 Msa0305890:intron
TATTGTTCTTAGTATGCACC+AGG 0.565729 2_3:-63977136 Msa0305890:intron
AAAAGCACAACTAAGGTGAT+GGG 0.568881 2_3:-63976988 Msa0305890:three_prime_UTR
TGGAATGAGATACACAACTA+AGG 0.585500 2_3:-63979610 Msa0305890:CDS
TAATAATGTGACTAGAGCAC+AGG 0.596440 2_3:-63976740 None:intergenic
CTTGAAAAGAATGGTCGCCA+TGG 0.597220 2_3:+63980951 None:intergenic
GGTGATGGGATTTAAAAGAG+AGG 0.605653 2_3:-63976974 Msa0305890:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 2_3:-63979414 Msa0305890:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 2_3:+63979351 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 2_3:+63977177 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 2_3:-63979362 Msa0305890:CDS
GGTTGGAAAGCTTACACGTG+TGG 0.644303 2_3:+63980906 None:intergenic
TTTGAAGTCATCATGTGTGT+CGG 0.650291 2_3:+63979575 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 2_3:+63976942 None:intergenic
AAGCACTTCTGATGTATGTG+AGG 0.703909 2_3:+63980974 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 2_3:+63979350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATATTTTGTTA+TGG + chr2_3:63977295-63977314 None:intergenic 10.0%
!!! AATGTTAATTTTAAAAAACT+AGG + chr2_3:63979932-63979951 None:intergenic 10.0%
!! ATGAAAAAAAATTAAGTTAA+AGG - chr2_3:63979963-63979982 Msa0305890:intron 10.0%
!!! TTCTTCAAATATGATTTTTA+AGG - chr2_3:63976754-63976773 Msa0305890:three_prime_UTR 15.0%
!! AAAAAAGAAGAAGAAAATTA+GGG + chr2_3:63976967-63976986 None:intergenic 15.0%
!! AAAAAAAGAAGAAGAAAATT+AGG + chr2_3:63976968-63976987 None:intergenic 15.0%
!! TTTATTTATCAGATTGAAAT+GGG - chr2_3:63977061-63977080 Msa0305890:intron 15.0%
!! GAATTATGTTAATGTTAAAA+TGG - chr2_3:63977110-63977129 Msa0305890:intron 15.0%
!! GGTAAATTTAAAAAGAAAAA+GGG + chr2_3:63977730-63977749 None:intergenic 15.0%
!! TGGTAAATTTAAAAAGAAAA+AGG + chr2_3:63977731-63977750 None:intergenic 15.0%
!!! TTTTAGTGTTATGATTTAAA+TGG - chr2_3:63978104-63978123 Msa0305890:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG - chr2_3:63978514-63978533 Msa0305890:intron 15.0%
!!! GAAACTAAAACAATTTTAAA+GGG - chr2_3:63979528-63979547 Msa0305890:CDS 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG - chr2_3:63979652-63979671 Msa0305890:intron 15.0%
!! AAATAAAAAACAATAAAGCA+AGG + chr2_3:63981024-63981043 None:intergenic 15.0%
!! CTGATAAATAAAGAAAAGAA+AGG + chr2_3:63977053-63977072 None:intergenic 20.0%
!!! CTTTATTTATCAGATTGAAA+TGG - chr2_3:63977060-63977079 Msa0305890:intron 20.0%
!! TTATGTTAATGTTAAAATGG+AGG - chr2_3:63977113-63977132 Msa0305890:intron 20.0%
!!! AAATCTTGAAAAGCTTTTTT+AGG - chr2_3:63977207-63977226 Msa0305890:intron 20.0%
!! ATAATATGCAATTATGCTAA+AGG + chr2_3:63977263-63977282 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG - chr2_3:63977445-63977464 Msa0305890:intron 20.0%
!!! CTTTATTTTATCTTTTGCTA+CGG + chr2_3:63977858-63977877 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG + chr2_3:63978288-63978307 None:intergenic 20.0%
!! ACTAATAAAATTGAGAATTC+TGG - chr2_3:63978288-63978307 Msa0305890:intron 20.0%
!!! TTTGGTTTTATTATGTTGAA+TGG - chr2_3:63979456-63979475 Msa0305890:intron 20.0%
!!! GGAAACTAAAACAATTTTAA+AGG - chr2_3:63979527-63979546 Msa0305890:CDS 20.0%
!!! AAAACACATTTGAAACTTAA+AGG + chr2_3:63979631-63979650 None:intergenic 20.0%
!! TCTGATCTTCATAATATATT+TGG + chr2_3:63980086-63980105 None:intergenic 20.0%
!!! AGAATTTTGATATCCTTTAA+TGG - chr2_3:63980200-63980219 Msa0305890:intron 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG - chr2_3:63980455-63980474 Msa0305890:intron 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG + chr2_3:63980551-63980570 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG + chr2_3:63980570-63980589 None:intergenic 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG + chr2_3:63980571-63980590 None:intergenic 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG - chr2_3:63980949-63980968 Msa0305890:CDS 20.0%
!! CACATTATTATTCTAAATCA+GGG + chr2_3:63981087-63981106 None:intergenic 20.0%
!! TCACATTATTATTCTAAATC+AGG + chr2_3:63981088-63981107 None:intergenic 20.0%
!! TACATTTTATACCCAAAAAC+AGG - chr2_3:63976784-63976803 Msa0305890:three_prime_UTR 25.0%
!!! GAAAATTAGGGTTTGTTTTA+GGG + chr2_3:63976955-63976974 None:intergenic 25.0%
!!! AGAAAATTAGGGTTTGTTTT+AGG + chr2_3:63976956-63976975 None:intergenic 25.0%
!! TTTTTCCATTTTACGGTATT+GGG - chr2_3:63977015-63977034 Msa0305890:CDS 25.0%
! AAAGAAAAGAAAGGAAAGAA+AGG + chr2_3:63977044-63977063 None:intergenic 25.0%
! TCTAACTTGAAGCTAAAATT+TGG + chr2_3:63977539-63977558 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr2_3:63977604-63977623 None:intergenic 25.0%
!!! GTATGTTCAGTTTCATTTTT+TGG + chr2_3:63977654-63977673 None:intergenic 25.0%
!! ATTGTGTTTTCTGTATGTAA+CGG - chr2_3:63978156-63978175 Msa0305890:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr2_3:63978977-63978996 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG + chr2_3:63979013-63979032 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG + chr2_3:63979014-63979033 None:intergenic 25.0%
! AAACTATACGAGAAACTATT+AGG - chr2_3:63979260-63979279 Msa0305890:intron 25.0%
!! GTTTATGTAATCTCATGTTT+TGG - chr2_3:63979438-63979457 Msa0305890:intron 25.0%
!!! ATTTTAAAGGGTTAGTACAT+AGG - chr2_3:63979540-63979559 Msa0305890:CDS 25.0%
! GATCATTATGATTAAATTGC+AGG + chr2_3:63979572-63979591 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG + chr2_3:63979678-63979697 None:intergenic 25.0%
! ACACGATTGATATTTGAAAA+TGG + chr2_3:63980179-63980198 None:intergenic 25.0%
! TTGAATTTCATAGCCATTAA+AGG + chr2_3:63980216-63980235 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG - chr2_3:63980216-63980235 Msa0305890:intron 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG - chr2_3:63980656-63980675 Msa0305890:intron 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG - chr2_3:63980657-63980676 Msa0305890:intron 25.0%
! GGTGTGAAATATTGTTAAAT+AGG + chr2_3:63980776-63980795 None:intergenic 25.0%
! AAAAGCATGGAACTTTATGA+TGG + chr2_3:63976999-63977018 None:intergenic 30.0%
!!! TCCATGCTTTTTCCATTTTA+CGG - chr2_3:63977008-63977027 Msa0305890:exon 30.0%
! CTTTTTCCATTTTACGGTAT+TGG - chr2_3:63977014-63977033 Msa0305890:CDS 30.0%
TACGATAGCAAAACAATTTC+AGG + chr2_3:63977154-63977173 None:intergenic 30.0%
TTCCTATGTGTTTGATTATG+TGG - chr2_3:63977360-63977379 Msa0305890:intron 30.0%
CAATTCTGTAAGTTTCATCA+TGG - chr2_3:63977408-63977427 Msa0305890:intron 30.0%
GTTAGAATCAATTCTTCTAG+AGG - chr2_3:63977553-63977572 Msa0305890:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG - chr2_3:63977623-63977642 Msa0305890:intron 30.0%
!!! TGTTCAGTTTCATTTTTTGG+AGG + chr2_3:63977651-63977670 None:intergenic 30.0%
GTCTCATTCATATTCTACTA+AGG - chr2_3:63977753-63977772 Msa0305890:intron 30.0%
TTCATATTCTACTAAGGCAA+TGG - chr2_3:63977759-63977778 Msa0305890:intron 30.0%
! TAATTTGCAGCTTATAGCAT+AGG - chr2_3:63977796-63977815 Msa0305890:intron 30.0%
TAACTTATGAAGACAGCTTA+TGG + chr2_3:63977901-63977920 None:intergenic 30.0%
TGTGGAAATAAGCTGAAAAT+AGG - chr2_3:63977933-63977952 Msa0305890:intron 30.0%
TCAAATCAGTCAATTCAAAC+AGG - chr2_3:63978028-63978047 Msa0305890:CDS 30.0%
CTAACTAGTTCCTGTTATTA+TGG - chr2_3:63978207-63978226 Msa0305890:intron 30.0%
GTATCTCATTCCATAATAAC+AGG + chr2_3:63978220-63978239 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG - chr2_3:63978317-63978336 Msa0305890:intron 30.0%
TCTACATGAGAATTCTATGA+AGG - chr2_3:63978362-63978381 Msa0305890:intron 30.0%
CTACATGAGAATTCTATGAA+GGG - chr2_3:63978363-63978382 Msa0305890:intron 30.0%
!!! TGAAGGGTTTATTGTTTTGA+TGG - chr2_3:63978379-63978398 Msa0305890:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG - chr2_3:63978414-63978433 Msa0305890:intron 30.0%
TAATAATGTACAGGATGTCA+AGG - chr2_3:63978423-63978442 Msa0305890:intron 30.0%
TCCTGTTATGATTTACATGA+AGG - chr2_3:63978450-63978469 Msa0305890:intron 30.0%
CCTGTTATGATTTACATGAA+GGG - chr2_3:63978451-63978470 Msa0305890:intron 30.0%
ATATAATTTCTCAGGTAGCA+AGG + chr2_3:63978568-63978587 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG + chr2_3:63978576-63978595 None:intergenic 30.0%
GAAATTATATCCTCTGAATC+TGG - chr2_3:63978578-63978597 Msa0305890:intron 30.0%
TGTGCTTATGTGATTTGAAA+AGG - chr2_3:63978651-63978670 Msa0305890:intron 30.0%
GCTCTATCAAAAACCATATT+TGG - chr2_3:63978795-63978814 Msa0305890:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr2_3:63978835-63978854 None:intergenic 30.0%
TGTTAGAAGAGTAGATCAAA+TGG + chr2_3:63978910-63978929 None:intergenic 30.0%
TTGATCTACTCTTCTAACAA+CGG - chr2_3:63978911-63978930 Msa0305890:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr2_3:63978981-63979000 Msa0305890:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG + chr2_3:63979012-63979031 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG + chr2_3:63979015-63979034 None:intergenic 30.0%
!! CCACTTTTCTACAAACATTA+TGG - chr2_3:63979012-63979031 Msa0305890:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG - chr2_3:63979040-63979059 Msa0305890:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG - chr2_3:63979041-63979060 Msa0305890:intron 30.0%
! TACCATCTTTTCTACTATAG+GGG + chr2_3:63979125-63979144 None:intergenic 30.0%
! CTACCATCTTTTCTACTATA+GGG + chr2_3:63979126-63979145 None:intergenic 30.0%
! TCTACCATCTTTTCTACTAT+AGG + chr2_3:63979127-63979146 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG - chr2_3:63979198-63979217 Msa0305890:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG + chr2_3:63979256-63979275 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG - chr2_3:63979264-63979283 Msa0305890:intron 30.0%
! AATGAGTTGGAGAAAAAACA+TGG - chr2_3:63979298-63979317 Msa0305890:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr2_3:63979318-63979337 Msa0305890:intron 30.0%
ACATGAGATTACATAAACAC+AGG + chr2_3:63979436-63979455 None:intergenic 30.0%
TTGAAGAGGATGAAATCAAA+AGG + chr2_3:63979500-63979519 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG - chr2_3:63979500-63979519 Msa0305890:intron 30.0%
TAACCTGCACAAACTTATAT+AGG - chr2_3:63979599-63979618 Msa0305890:CDS 30.0%
!! TGAATATGACTTAGCTTTAC+TGG - chr2_3:63979723-63979742 Msa0305890:intron 30.0%
AAAATGTTCCTAGCACTTAA+AGG + chr2_3:63979809-63979828 None:intergenic 30.0%
! TTTACAGCATTTTTCACTTC+AGG + chr2_3:63979839-63979858 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG + chr2_3:63980250-63980269 None:intergenic 30.0%
GATTTCAACATATCTAGTTG+TGG - chr2_3:63980340-63980359 Msa0305890:intron 30.0%
ACATATATCAACAACGTACA+AGG + chr2_3:63980394-63980413 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG - chr2_3:63980460-63980479 Msa0305890:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG - chr2_3:63980511-63980530 Msa0305890:intron 30.0%
ATGAAAACTTGTGGAAATGT+TGG + chr2_3:63980654-63980673 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG - chr2_3:63980669-63980688 Msa0305890:intron 30.0%
AATTGATCAACTCTTGCAAT+GGG + chr2_3:63980733-63980752 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG + chr2_3:63980734-63980753 None:intergenic 30.0%
!!! ATTAGGGTTTGTTTTAGGGT+TGG + chr2_3:63976951-63976970 None:intergenic 35.0%
ACCGTAAAATGGAAAAAGCA+TGG + chr2_3:63977012-63977031 None:intergenic 35.0%
!!! AAGCTTTTTTAGGCTCTGTT+TGG - chr2_3:63977217-63977236 Msa0305890:intron 35.0%
CACCACATAATCAAACACAT+AGG + chr2_3:63977365-63977384 None:intergenic 35.0%
AGAGGCAAAATCAATTATCC+TGG - chr2_3:63977571-63977590 Msa0305890:intron 35.0%
GCAAAATCAATTATCCTGGA+GGG - chr2_3:63977575-63977594 Msa0305890:intron 35.0%
! TGAGTGGCAATATTCACTTT+TGG + chr2_3:63977700-63977719 None:intergenic 35.0%
GAAAAAGGGCTAAAATTGAG+TGG + chr2_3:63977716-63977735 None:intergenic 35.0%
GTAGAATATGAATGAGACAG+TGG + chr2_3:63977751-63977770 None:intergenic 35.0%
TATTCTACTAAGGCAATGGT+TGG - chr2_3:63977763-63977782 Msa0305890:intron 35.0%
ATTCTACTAAGGCAATGGTT+GGG - chr2_3:63977764-63977783 Msa0305890:intron 35.0%
TAATCACTTGAGATTGTCTG+CGG + chr2_3:63977993-63978012 None:intergenic 35.0%
! TTTTCTGTATGTAACGGTGT+TGG - chr2_3:63978162-63978181 Msa0305890:intron 35.0%
TGGAATGAGATACACAACTA+AGG - chr2_3:63978227-63978246 Msa0305890:intron 35.0%
! TTTGAAGTCATCATGTGTGT+CGG + chr2_3:63978265-63978284 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG + chr2_3:63978454-63978473 None:intergenic 35.0%
!!! AATCTGGACTAGTCTTTTCA+TGG - chr2_3:63978594-63978613 Msa0305890:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG + chr2_3:63978791-63978810 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr2_3:63978811-63978830 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr2_3:63978830-63978849 Msa0305890:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG + chr2_3:63978844-63978863 None:intergenic 35.0%
CTTTCTAATGGTTTCTCTAC+TGG - chr2_3:63978842-63978861 Msa0305890:intron 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG - chr2_3:63978852-63978871 Msa0305890:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr2_3:63978963-63978982 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr2_3:63978968-63978987 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr2_3:63978988-63979007 None:intergenic 35.0%
ACGACATTAGATAGAGAGTT+GGG - chr2_3:63979095-63979114 Msa0305890:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG - chr2_3:63979120-63979139 Msa0305890:intron 35.0%
AGATGGTAGAAACTAGACAT+AGG - chr2_3:63979137-63979156 Msa0305890:intron 35.0%
AAACTAGACATAGGTGGTTT+CGG - chr2_3:63979146-63979165 Msa0305890:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG - chr2_3:63979182-63979201 Msa0305890:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG - chr2_3:63979285-63979304 Msa0305890:intron 35.0%
AGGATGAAATCAAAAGGCAA+GGG + chr2_3:63979494-63979513 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG + chr2_3:63979605-63979624 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG - chr2_3:63979605-63979624 Msa0305890:CDS 35.0%
! TAGCTTTACTGGATGATGAA+TGG - chr2_3:63979734-63979753 Msa0305890:intron 35.0%
AAAATGCTGTAAAAGCCTAC+AGG - chr2_3:63979846-63979865 Msa0305890:intron 35.0%
TTGATATATGTACATGCGTC+TGG - chr2_3:63980403-63980422 Msa0305890:intron 35.0%
TCTCCCTTAATGAAAACTTG+TGG + chr2_3:63980663-63980682 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG - chr2_3:63980672-63980691 Msa0305890:intron 35.0%
TATTGTTCTTAGTATGCACC+AGG - chr2_3:63980701-63980720 Msa0305890:intron 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG + chr2_3:63980843-63980862 None:intergenic 35.0%
! AAGCAGTAAAAGCACAACTA+AGG - chr2_3:63980842-63980861 Msa0305890:intron 35.0%
! TAAAAGCACAACTAAGGTGA+TGG - chr2_3:63980848-63980867 Msa0305890:intron 35.0%
! AAAAGCACAACTAAGGTGAT+GGG - chr2_3:63980849-63980868 Msa0305890:intron 35.0%
!! TCTCTCTCTCTCCTGTTTTT+GGG + chr2_3:63976798-63976817 None:intergenic 40.0%
! ATCTCTCTCTCTCCTGTTTT+TGG + chr2_3:63976799-63976818 None:intergenic 40.0%
AAGCACTTCTGATGTATGTG+AGG + chr2_3:63976866-63976885 None:intergenic 40.0%
!! ATACATCAGAAGTGCTTCCA+TGG - chr2_3:63976869-63976888 Msa0305890:three_prime_UTR 40.0%
! ATGGCGACCATTCTTTTCAA+GGG - chr2_3:63976888-63976907 Msa0305890:three_prime_UTR 40.0%
AGCGATTCCCTTGAAAAGAA+TGG + chr2_3:63976898-63976917 None:intergenic 40.0%
GGATACCCAATACCGTAAAA+TGG + chr2_3:63977023-63977042 None:intergenic 40.0%
TTAGGCTCTGTTTGGATGAA+CGG - chr2_3:63977225-63977244 Msa0305890:intron 40.0%
GGCAAAATCAATTATCCTGG+AGG - chr2_3:63977574-63977593 Msa0305890:intron 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + chr2_3:63977630-63977649 None:intergenic 40.0%
CATACATTGCCACTCAAGTT+TGG - chr2_3:63977669-63977688 Msa0305890:intron 40.0%
!! GTGGCAATATTCACTTTTGG+AGG + chr2_3:63977697-63977716 None:intergenic 40.0%
GCTGTCTTCATAAGTTATCC+TGG - chr2_3:63977904-63977923 Msa0305890:intron 40.0%
AAGTTATCCTGGAGATCTTG+TGG - chr2_3:63977915-63977934 Msa0305890:intron 40.0%
CTTATTTCCACAAGATCTCC+AGG + chr2_3:63977925-63977944 None:intergenic 40.0%
AATCACTTGAGATTGTCTGC+GGG + chr2_3:63977992-63978011 None:intergenic 40.0%
!! CAGGCACTAAGATTGACTTT+TGG - chr2_3:63978047-63978066 Msa0305890:intron 40.0%
GAGAACTAAATCCACACTGT+GGG + chr2_3:63978489-63978508 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG + chr2_3:63978490-63978509 None:intergenic 40.0%
! AAAGACTAGTCCAGATTCAG+AGG + chr2_3:63978591-63978610 None:intergenic 40.0%
TTGAAAAGGTAGACTCAGAG+TGG - chr2_3:63978665-63978684 Msa0305890:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr2_3:63978823-63978842 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr2_3:63978882-63978901 None:intergenic 40.0%
GAGAAGAGTCAGGTTAAAAG+AGG + chr2_3:63978888-63978907 None:intergenic 40.0%
AGATCAAATGGAGAAGAGTC+AGG + chr2_3:63978898-63978917 None:intergenic 40.0%
TCTTCTAACAACGGCATCTA+TGG - chr2_3:63978920-63978939 Msa0305890:intron 40.0%
CTTCTAACAACGGCATCTAT+GGG - chr2_3:63978921-63978940 Msa0305890:intron 40.0%
!! CTGATGGGTTATTGACTAGA+CGG - chr2_3:63979056-63979075 Msa0305890:intron 40.0%
!! TGATGGGTTATTGACTAGAC+GGG - chr2_3:63979057-63979076 Msa0305890:intron 40.0%
GACGACATTAGATAGAGAGT+TGG - chr2_3:63979094-63979113 Msa0305890:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG - chr2_3:63979096-63979115 Msa0305890:intron 40.0%
TGGTAGAAACTAGACATAGG+TGG - chr2_3:63979140-63979159 Msa0305890:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + chr2_3:63979368-63979387 None:intergenic 40.0%
TGTTGTTGTAGCTGATGTCA+TGG - chr2_3:63979405-63979424 Msa0305890:intron 40.0%
GAGGATGAAATCAAAAGGCA+AGG + chr2_3:63979495-63979514 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG - chr2_3:63979506-63979525 Msa0305890:intron 40.0%
! AGTTTCCTTTTCCGTTGAAG+AGG + chr2_3:63979514-63979533 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG - chr2_3:63979798-63979817 Msa0305890:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG - chr2_3:63979811-63979830 Msa0305890:intron 40.0%
GCATGAACAAACTTACCTGT+AGG + chr2_3:63979864-63979883 None:intergenic 40.0%
! ACAGGTAAGTTTGTTCATGC+TGG - chr2_3:63979864-63979883 Msa0305890:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG + chr2_3:63980627-63980646 None:intergenic 40.0%
TATTTCACACCCTTGTAGAG+TGG - chr2_3:63980785-63980804 Msa0305890:intron 40.0%
TTCAACTCACCACTCTACAA+GGG + chr2_3:63980797-63980816 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG - chr2_3:63980863-63980882 Msa0305890:intron 40.0%
ACAGATTGCATCGAACAAGT+CGG + chr2_3:63980898-63980917 None:intergenic 40.0%
ACGCAGACAACTTCGAACTA+AGG + chr2_3:63976829-63976848 None:intergenic 45.0%
CTTGAAAAGAATGGTCGCCA+TGG + chr2_3:63976889-63976908 None:intergenic 45.0%
! CATGGCGACCATTCTTTTCA+AGG - chr2_3:63976887-63976906 Msa0305890:three_prime_UTR 45.0%
TTGGAGGAACCAAACTTGAG+TGG + chr2_3:63977681-63977700 None:intergenic 45.0%
AATCCACACTGTGGGAAATC+AGG + chr2_3:63978481-63978500 None:intergenic 45.0%
AAAAGGTAGACTCAGAGTGG+AGG - chr2_3:63978668-63978687 Msa0305890:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_3:63978741-63978760 Msa0305890:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_3:63978742-63978761 Msa0305890:intron 45.0%
!! GATGGGTTATTGACTAGACG+GGG - chr2_3:63979058-63979077 Msa0305890:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG - chr2_3:63979203-63979222 Msa0305890:intron 45.0%
GAGTCAGATCACTAGAGGTA+GGG - chr2_3:63979225-63979244 Msa0305890:intron 45.0%
AGTCAGATCACTAGAGGTAG+GGG - chr2_3:63979226-63979245 Msa0305890:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_3:63978742-63978761 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + chr2_3:63979369-63979388 None:intergenic 45.0%
! AAGGGTTAGTACATAGGTGC+TGG - chr2_3:63979546-63979565 Msa0305890:CDS 45.0%
GTGACTGCAGAGAAAGAACA+TGG + chr2_3:63980628-63980647 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG - chr2_3:63980628-63980647 Msa0305890:intron 45.0%
TCTTGCAATGGGAACTAACC+TGG + chr2_3:63980722-63980741 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG + chr2_3:63980798-63980817 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG - chr2_3:63980796-63980815 Msa0305890:intron 45.0%
GGTTGGAAAGCTTACACGTG+TGG + chr2_3:63976934-63976953 None:intergenic 50.0%
! GACATGTTTGGTTTCCCTCC+AGG + chr2_3:63977592-63977611 None:intergenic 50.0%
GTACCTGATTTCCCACAGTG+TGG - chr2_3:63978475-63978494 Msa0305890:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_3:63979366-63979385 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_3:63978740-63978759 Msa0305890:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_3:63978746-63978765 Msa0305890:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG - chr2_3:63979168-63979187 Msa0305890:intron 50.0%
GAGAGGAGTCAGATCACTAG+AGG - chr2_3:63979220-63979239 Msa0305890:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG - chr2_3:63979224-63979243 Msa0305890:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_3:63978746-63978765 None:intergenic 50.0%
! GGTATGGTTGTGTCACTGTG+TGG - chr2_3:63980476-63980495 Msa0305890:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG - chr2_3:63980520-63980539 Msa0305890:intron 50.0%
ATTGGCAGCACCAGCATTTC+CGG + chr2_3:63980533-63980552 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_3:63979361-63979380 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_3:63979355-63979374 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_3:63979354-63979373 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2_3:63978754-63978773 Msa0305890:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_3:63979354-63979373 Msa0305890:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_3:63979355-63979374 Msa0305890:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_3:63979361-63979380 Msa0305890:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 63976743 63981116 63976743 ID=Msa0305890;Name=Msa0305890
chr2_3 mRNA 63976743 63981116 63976743 ID=Msa0305890-mRNA-1;Parent=Msa0305890;Name=Msa0305890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|266|158
chr2_3 exon 63976743 63977056 63976743 ID=Msa0305890-mRNA-1:exon:21408;Parent=Msa0305890-mRNA-1
chr2_3 exon 63977137 63977215 63977137 ID=Msa0305890-mRNA-1:exon:21407;Parent=Msa0305890-mRNA-1
chr2_3 exon 63977992 63978058 63977992 ID=Msa0305890-mRNA-1:exon:21406;Parent=Msa0305890-mRNA-1
chr2_3 exon 63979324 63979423 63979324 ID=Msa0305890-mRNA-1:exon:21405;Parent=Msa0305890-mRNA-1
chr2_3 exon 63979521 63979652 63979521 ID=Msa0305890-mRNA-1:exon:21404;Parent=Msa0305890-mRNA-1
chr2_3 exon 63980921 63981116 63980921 ID=Msa0305890-mRNA-1:exon:21403;Parent=Msa0305890-mRNA-1
chr2_3 five_prime_UTR 63980972 63981116 63980972 ID=Msa0305890-mRNA-1:five_prime_utr;Parent=Msa0305890-mRNA-1
chr2_3 CDS 63980921 63980971 63980921 ID=Msa0305890-mRNA-1:cds;Parent=Msa0305890-mRNA-1
chr2_3 CDS 63979521 63979652 63979521 ID=Msa0305890-mRNA-1:cds;Parent=Msa0305890-mRNA-1
chr2_3 CDS 63979324 63979423 63979324 ID=Msa0305890-mRNA-1:cds;Parent=Msa0305890-mRNA-1
chr2_3 CDS 63977992 63978058 63977992 ID=Msa0305890-mRNA-1:cds;Parent=Msa0305890-mRNA-1
chr2_3 CDS 63977137 63977215 63977137 ID=Msa0305890-mRNA-1:cds;Parent=Msa0305890-mRNA-1
chr2_3 CDS 63977009 63977056 63977009 ID=Msa0305890-mRNA-1:cds;Parent=Msa0305890-mRNA-1
chr2_3 three_prime_UTR 63976743 63977008 63976743 ID=Msa0305890-mRNA-1:three_prime_utr;Parent=Msa0305890-mRNA-1
Gene Sequence

>Msa0305890

ATGGCGACCATTCTTTTCAAGGGAATCGCTGCTCGTTCTCTCACCACACGTCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>Msa0305890

MATILFKGIAARSLTTRLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*