AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359390 MtrunA17_Chr1g0149801 96.567 233 8 0 1 233 1 233 2.28e-170 468
Msa1359390 MtrunA17_Chr4g0001071 43.069 202 106 6 36 233 40 236 1.69e-54 174
Msa1359390 MtrunA17_Chr7g0239661 30.380 237 146 8 11 233 23 254 1.11e-21 90.1
Msa1359390 MtrunA17_Chr5g0435861 31.381 239 146 9 4 232 24 254 2.19e-21 89.4
Msa1359390 MtrunA17_Chr5g0444341 32.110 109 68 2 130 232 105 213 1.73e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359390 AT4G31930.1 54.468 235 104 2 1 233 1 234 1.41e-90 266
Msa1359390 AT1G80720.2 42.857 231 116 4 10 233 20 241 6.56e-61 191
Msa1359390 AT1G15870.1 42.667 225 117 6 17 233 21 241 1.92e-59 187
Msa1359390 AT1G80720.1 45.550 191 102 1 43 233 1 189 1.99e-59 186
Msa1359390 AT5G05990.1 29.924 264 147 11 1 232 1 258 2.53e-21 89.7
Msa1359390 AT5G02050.1 28.708 209 128 6 42 233 63 267 3.41e-21 89.4
Msa1359390 AT3G55605.1 30.488 164 103 4 79 233 97 258 1.20e-16 77.0
Msa1359390 AT4G32605.1 36.975 119 67 3 120 233 104 219 2.36e-15 72.8
Msa1359390 AT2G39795.1 27.315 216 132 9 33 233 45 250 1.36e-14 71.2
Msa1359390 AT2G39790.1 28.125 160 92 7 81 232 95 239 1.57e-12 65.5

Find 67 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACCTTGGACCTGATTTC+AGG 0.173345 tig0016715:+21187 Msa1359390:CDS
GTTACGATGAAGGGGAAATT+TGG 0.184899 tig0016715:+20934 Msa1359390:CDS
CAAAACTTCTCCTGAATCTT+AGG 0.262004 tig0016715:-21880 None:intergenic
GTTGGATTCAAATGGAGATT+TGG 0.300681 tig0016715:-20561 None:intergenic
GAGAGAACATTACTGATTCT+AGG 0.315397 tig0016715:-20491 None:intergenic
TTACGATGAAGGGGAAATTT+GGG 0.341454 tig0016715:+20935 Msa1359390:CDS
AGGATAGAATTGAACTTCTA+AGG 0.343544 tig0016715:+21971 Msa1359390:CDS
CTCAGCGTGGCCTGATAGTT+TGG 0.345831 tig0016715:+21116 Msa1359390:CDS
ATTGAAGCTACAATGTTTGA+TGG 0.356300 tig0016715:+20976 Msa1359390:CDS
TGCTAACACTACAAATCAAA+TGG 0.360244 tig0016715:-22108 None:intergenic
GAATCTGAAGCCTAAGATTC+AGG 0.365605 tig0016715:+21870 Msa1359390:CDS
TTTGAACATGTTCCTGCATA+TGG 0.377388 tig0016715:+21000 Msa1359390:CDS
CGCAAAATGTTGGATTCAAA+TGG 0.377903 tig0016715:-20569 None:intergenic
CAAGACTTTGATAATTAGTC+AGG 0.387743 tig0016715:+22287 Msa1359390:three_prime_UTR
TTAAACGACATCATATGAAT+TGG 0.389774 tig0016715:-20317 None:intergenic
GCATATGGAGATGATAGTTC+AGG 0.394315 tig0016715:+21015 Msa1359390:CDS
CCGTAAGAATGTTAAGCATT+AGG 0.404340 tig0016715:+22159 Msa1359390:three_prime_UTR
TTCTGAACATCCAAACTATC+AGG 0.406918 tig0016715:-21126 None:intergenic
ACATCACATAACTACTATGT+AGG 0.445412 tig0016715:-20342 None:intergenic
CATAATTCAAACCTGAAATC+AGG 0.448439 tig0016715:-21198 None:intergenic
ATTTCTACAGCAGCAAAACT+TGG 0.449934 tig0016715:-22344 None:intergenic
TGAATACGCTCCTCCTCATC+AGG 0.457720 tig0016715:+20622 Msa1359390:CDS
CCTAATGCTTAACATTCTTA+CGG 0.462342 tig0016715:-22159 None:intergenic
AATGTTCTCTCTCAAACCTC+AGG 0.465355 tig0016715:+20503 Msa1359390:CDS
ACGGAGAATTCGCAAAATGT+TGG 0.477227 tig0016715:-20579 None:intergenic
TCTTCATCTCAGTTTGATTG+TGG 0.483776 tig0016715:+21050 Msa1359390:CDS
CGAATAAGAACAGACATGTC+TGG 0.489331 tig0016715:-20425 None:intergenic
ATCGTAACCACTTGCTCACC+AGG 0.494801 tig0016715:-20919 None:intergenic
GCTAACACTACAAATCAAAT+GGG 0.498261 tig0016715:-22107 None:intergenic
TTGAAGCTACAATGTTTGAT+GGG 0.509177 tig0016715:+20977 Msa1359390:CDS
TGAGCAAGTGGTTACGATGA+AGG 0.510024 tig0016715:+20924 Msa1359390:CDS
CATCACATAACTACTATGTA+GGG 0.514059 tig0016715:-20341 None:intergenic
CTTGATACTCGATTTCGTTA+CGG 0.514717 tig0016715:-20598 None:intergenic
CTGAAATCAGGTCCAAGGTA+AGG 0.518651 tig0016715:-21186 None:intergenic
GAGCAAGTGGTTACGATGAA+GGG 0.521381 tig0016715:+20925 Msa1359390:CDS
TGTTAAGCATTAGGAGGCAA+GGG 0.528526 tig0016715:+22168 Msa1359390:three_prime_UTR
TGATTGTGGATATATCGAAA+GGG 0.531126 tig0016715:+21064 Msa1359390:CDS
ATTCCTACAATGGTAAAACT+TGG 0.542661 tig0016715:-22066 None:intergenic
GAACTATCATCTCCATATGC+AGG 0.542924 tig0016715:-21012 None:intergenic
CATATGGAGATGATAGTTCA+GGG 0.543217 tig0016715:+21016 Msa1359390:CDS
AACGATTTGAATTCTGTCAC+AGG 0.543255 tig0016715:-20880 None:intergenic
TTGATTGTGGATATATCGAA+AGG 0.546720 tig0016715:+21063 Msa1359390:CDS
ATGTTAAGCATTAGGAGGCA+AGG 0.560179 tig0016715:+22167 Msa1359390:three_prime_UTR
AATTGAACTTCTAAGGTGGA+TGG 0.561187 tig0016715:+21978 Msa1359390:CDS
TTGCGAGTACTTGGACGCAA+GGG 0.561929 tig0016715:+21900 Msa1359390:CDS
GATTGTGGATATATCGAAAG+GGG 0.572237 tig0016715:+21065 Msa1359390:CDS
GAAGAAACTAATTCCTACAA+TGG 0.594842 tig0016715:-22076 None:intergenic
GATATATCGAAAGGGGAAGG+TGG 0.596404 tig0016715:+21072 Msa1359390:CDS
AGAATAGTGGGAACCTGATG+AGG 0.597183 tig0016715:-20635 None:intergenic
CAAACCTGAAATCAGGTCCA+AGG 0.599008 tig0016715:-21191 None:intergenic
TTTGCGAGTACTTGGACGCA+AGG 0.601738 tig0016715:+21899 Msa1359390:CDS
ATAGAATTGAACTTCTAAGG+TGG 0.601785 tig0016715:+21974 Msa1359390:CDS
TGCGAGTACTTGGACGCAAG+GGG 0.604395 tig0016715:+21901 Msa1359390:CDS
TAAGAATGTTAAGCATTAGG+AGG 0.614195 tig0016715:+22162 Msa1359390:three_prime_UTR
AGCAAGTGGTTACGATGAAG+GGG 0.615389 tig0016715:+20926 Msa1359390:CDS
TTTATTGTTGAAGAGAGACC+TGG 0.619462 tig0016715:+20901 Msa1359390:CDS
AGAGAGACCTGGTGAGCAAG+TGG 0.623326 tig0016715:+20912 Msa1359390:CDS
TACGATGAAGGGGAAATTTG+GGG 0.627192 tig0016715:+20936 Msa1359390:CDS
ATGTCGACTAGGCCTTACCT+TGG 0.627849 tig0016715:+21174 Msa1359390:CDS
GTGGATATATCGAAAGGGGA+AGG 0.628718 tig0016715:+21069 Msa1359390:CDS
ATAGTGGGAACCTGATGAGG+AGG 0.642607 tig0016715:-20632 None:intergenic
AGCGAGGGAAGATGTCGACT+AGG 0.671718 tig0016715:+21163 Msa1359390:CDS
AGCTCTGTTACTGAAACCTG+AGG 0.676912 tig0016715:-20519 None:intergenic
ATCACATAACTACTATGTAG+GGG 0.682694 tig0016715:-20340 None:intergenic
ACACGAGTATATGATGAACA+AGG 0.706429 tig0016715:+21951 Msa1359390:CDS
TAGAATTCGTCTGCTCAGCG+TGG 0.712888 tig0016715:+21103 Msa1359390:CDS
ATATGGAGATGATAGTTCAG+GGG 0.730665 tig0016715:+21017 Msa1359390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAGTAAAAAAATAATTTTTT+TGG + tig0016715:20788-20807 Msa1359390:intron 10.0%
!!! AAATCTAAATCAAAAAATTT+TGG - tig0016715:21728-21747 None:intergenic 10.0%
!!! GAGTAAAAAAATAATTTTTT+TGG + tig0016715:20788-20807 Msa1359390:intron 10.0%
!!! AAATCTAAATCAAAAAATTT+TGG - tig0016715:21728-21747 None:intergenic 10.0%
!!! TTTTGATCAATTTTGTTATT+AGG + tig0016715:20677-20696 Msa1359390:intron 15.0%
!!! TTTGATCAATTTTGTTATTA+GGG + tig0016715:20678-20697 Msa1359390:intron 15.0%
!!! AAAAATAATTTTTTTGGAAG+TGG + tig0016715:20794-20813 Msa1359390:intron 15.0%
!!! AAAATAATTTTTTTGGAAGT+GGG + tig0016715:20795-20814 Msa1359390:intron 15.0%
!!! TTTTGATCAATTTTGTTATT+AGG + tig0016715:20677-20696 Msa1359390:intron 15.0%
!!! TTTGATCAATTTTGTTATTA+GGG + tig0016715:20678-20697 Msa1359390:intron 15.0%
!!! AAAAATAATTTTTTTGGAAG+TGG + tig0016715:20794-20813 Msa1359390:intron 15.0%
!!! AAAATAATTTTTTTGGAAGT+GGG + tig0016715:20795-20814 Msa1359390:intron 15.0%
!!! TTTTTTTCATGTAGAATAGT+GGG - tig0016715:20650-20669 None:intergenic 20.0%
!!! ATTTTTTTCATGTAGAATAG+TGG - tig0016715:20651-20670 None:intergenic 20.0%
!!! TTTAAAACTTTGATAGCTTA+AGG + tig0016715:21463-21482 Msa1359390:intron 20.0%
!! TGAATAAAGTTGAAATGTTT+AGG - tig0016715:21701-21720 None:intergenic 20.0%
!! AACATTTCAACTTTATTCAT+TGG + tig0016715:21702-21721 Msa1359390:intron 20.0%
!!! TTTTCATCTGTTTAAATTGT+TGG + tig0016715:21841-21860 Msa1359390:intron 20.0%
!!! AGGAAATTGTTGAATATTTT+TGG + tig0016715:22250-22269 Msa1359390:three_prime_UTR 20.0%
!!! AAATTGTTGAATATTTTTGG+TGG + tig0016715:22253-22272 Msa1359390:three_prime_UTR 20.0%
!!! TTTTTTTCATGTAGAATAGT+GGG - tig0016715:20650-20669 None:intergenic 20.0%
!!! ATTTTTTTCATGTAGAATAG+TGG - tig0016715:20651-20670 None:intergenic 20.0%
!!! TTTAAAACTTTGATAGCTTA+AGG + tig0016715:21463-21482 Msa1359390:intron 20.0%
!! TGAATAAAGTTGAAATGTTT+AGG - tig0016715:21701-21720 None:intergenic 20.0%
!! AACATTTCAACTTTATTCAT+TGG + tig0016715:21702-21721 Msa1359390:intron 20.0%
!!! TTTTCATCTGTTTAAATTGT+TGG + tig0016715:21841-21860 Msa1359390:intron 20.0%
!!! AGGAAATTGTTGAATATTTT+TGG + tig0016715:22250-22269 Msa1359390:three_prime_UTR 20.0%
!!! AAATTGTTGAATATTTTTGG+TGG + tig0016715:22253-22272 Msa1359390:three_prime_UTR 20.0%
! TTAAACGACATCATATGAAT+TGG - tig0016715:20320-20339 None:intergenic 25.0%
! ATATCACAATGTGATTGTTA+TGG - tig0016715:21283-21302 None:intergenic 25.0%
! AACAATCACATTGTGATATT+TGG + tig0016715:21284-21303 Msa1359390:intron 25.0%
!! CAATTTTACTTACAAAAGCA+CGG - tig0016715:21651-21670 None:intergenic 25.0%
! CGATGAATGAATGATAAAAA+AGG + tig0016715:22230-22249 Msa1359390:three_prime_UTR 25.0%
! TTAAACGACATCATATGAAT+TGG - tig0016715:20320-20339 None:intergenic 25.0%
! ATATCACAATGTGATTGTTA+TGG - tig0016715:21283-21302 None:intergenic 25.0%
! AACAATCACATTGTGATATT+TGG + tig0016715:21284-21303 Msa1359390:intron 25.0%
!! CAATTTTACTTACAAAAGCA+CGG - tig0016715:21651-21670 None:intergenic 25.0%
! CGATGAATGAATGATAAAAA+AGG + tig0016715:22230-22249 Msa1359390:three_prime_UTR 25.0%
ATCACATAACTACTATGTAG+GGG - tig0016715:20343-20362 None:intergenic 30.0%
CATCACATAACTACTATGTA+GGG - tig0016715:20344-20363 None:intergenic 30.0%
ACATCACATAACTACTATGT+AGG - tig0016715:20345-20364 None:intergenic 30.0%
!! TTTTTGGAAGTGGGTAATTT+CGG + tig0016715:20804-20823 Msa1359390:intron 30.0%
ATTGAAGCTACAATGTTTGA+TGG + tig0016715:20976-20995 Msa1359390:CDS 30.0%
TTGAAGCTACAATGTTTGAT+GGG + tig0016715:20977-20996 Msa1359390:CDS 30.0%
TTGATTGTGGATATATCGAA+AGG + tig0016715:21063-21082 Msa1359390:CDS 30.0%
TGATTGTGGATATATCGAAA+GGG + tig0016715:21064-21083 Msa1359390:CDS 30.0%
! AAAGTTTTCATGTTAAAGCG+AGG + tig0016715:21147-21166 Msa1359390:CDS 30.0%
! AAGTTTTCATGTTAAAGCGA+GGG + tig0016715:21148-21167 Msa1359390:CDS 30.0%
CATAATTCAAACCTGAAATC+AGG - tig0016715:21201-21220 None:intergenic 30.0%
CCAAACAACAAATGTACAAT+AGG - tig0016715:21238-21257 None:intergenic 30.0%
!! CCTATTGTACATTTGTTGTT+TGG + tig0016715:21235-21254 Msa1359390:intron 30.0%
!! ATTGTACATTTGTTGTTTGG+TGG + tig0016715:21238-21257 Msa1359390:intron 30.0%
CATTGTGATATTTGGTATAG+TGG + tig0016715:21292-21311 Msa1359390:intron 30.0%
! TGAAATGTTTAGGATCTGTT+AGG - tig0016715:21691-21710 None:intergenic 30.0%
! CATTGCAAAACTTTTATCGA+AGG + tig0016715:21772-21791 Msa1359390:intron 30.0%
AGGATAGAATTGAACTTCTA+AGG + tig0016715:21971-21990 Msa1359390:CDS 30.0%
! ATAGAATTGAACTTCTAAGG+TGG + tig0016715:21974-21993 Msa1359390:CDS 30.0%
! CAAGTCTTTTGTGGAAAAAT+AGG + tig0016715:22008-22027 Msa1359390:CDS 30.0%
ATTCCTACAATGGTAAAACT+TGG - tig0016715:22069-22088 None:intergenic 30.0%
GAAGAAACTAATTCCTACAA+TGG - tig0016715:22079-22098 None:intergenic 30.0%
GCTAACACTACAAATCAAAT+GGG - tig0016715:22110-22129 None:intergenic 30.0%
TGCTAACACTACAAATCAAA+TGG - tig0016715:22111-22130 None:intergenic 30.0%
CCTAATGCTTAACATTCTTA+CGG - tig0016715:22162-22181 None:intergenic 30.0%
TAAGAATGTTAAGCATTAGG+AGG + tig0016715:22162-22181 Msa1359390:three_prime_UTR 30.0%
!!! TGTTGAATATTTTTGGTGGA+TGG + tig0016715:22257-22276 Msa1359390:three_prime_UTR 30.0%
! CAAGACTTTGATAATTAGTC+AGG + tig0016715:22287-22306 Msa1359390:three_prime_UTR 30.0%
ATCACATAACTACTATGTAG+GGG - tig0016715:20343-20362 None:intergenic 30.0%
CATCACATAACTACTATGTA+GGG - tig0016715:20344-20363 None:intergenic 30.0%
ACATCACATAACTACTATGT+AGG - tig0016715:20345-20364 None:intergenic 30.0%
!! TTTTTGGAAGTGGGTAATTT+CGG + tig0016715:20804-20823 Msa1359390:intron 30.0%
ATTGAAGCTACAATGTTTGA+TGG + tig0016715:20976-20995 Msa1359390:CDS 30.0%
TTGAAGCTACAATGTTTGAT+GGG + tig0016715:20977-20996 Msa1359390:CDS 30.0%
TTGATTGTGGATATATCGAA+AGG + tig0016715:21063-21082 Msa1359390:CDS 30.0%
TGATTGTGGATATATCGAAA+GGG + tig0016715:21064-21083 Msa1359390:CDS 30.0%
! AAAGTTTTCATGTTAAAGCG+AGG + tig0016715:21147-21166 Msa1359390:CDS 30.0%
! AAGTTTTCATGTTAAAGCGA+GGG + tig0016715:21148-21167 Msa1359390:CDS 30.0%
CATAATTCAAACCTGAAATC+AGG - tig0016715:21201-21220 None:intergenic 30.0%
CCAAACAACAAATGTACAAT+AGG - tig0016715:21238-21257 None:intergenic 30.0%
!! CCTATTGTACATTTGTTGTT+TGG + tig0016715:21235-21254 Msa1359390:intron 30.0%
!! ATTGTACATTTGTTGTTTGG+TGG + tig0016715:21238-21257 Msa1359390:intron 30.0%
CATTGTGATATTTGGTATAG+TGG + tig0016715:21292-21311 Msa1359390:intron 30.0%
! TGAAATGTTTAGGATCTGTT+AGG - tig0016715:21691-21710 None:intergenic 30.0%
! CATTGCAAAACTTTTATCGA+AGG + tig0016715:21772-21791 Msa1359390:intron 30.0%
AGGATAGAATTGAACTTCTA+AGG + tig0016715:21971-21990 Msa1359390:CDS 30.0%
! ATAGAATTGAACTTCTAAGG+TGG + tig0016715:21974-21993 Msa1359390:CDS 30.0%
! CAAGTCTTTTGTGGAAAAAT+AGG + tig0016715:22008-22027 Msa1359390:CDS 30.0%
ATTCCTACAATGGTAAAACT+TGG - tig0016715:22069-22088 None:intergenic 30.0%
GAAGAAACTAATTCCTACAA+TGG - tig0016715:22079-22098 None:intergenic 30.0%
GCTAACACTACAAATCAAAT+GGG - tig0016715:22110-22129 None:intergenic 30.0%
TGCTAACACTACAAATCAAA+TGG - tig0016715:22111-22130 None:intergenic 30.0%
CCTAATGCTTAACATTCTTA+CGG - tig0016715:22162-22181 None:intergenic 30.0%
TAAGAATGTTAAGCATTAGG+AGG + tig0016715:22162-22181 Msa1359390:three_prime_UTR 30.0%
!!! TGTTGAATATTTTTGGTGGA+TGG + tig0016715:22257-22276 Msa1359390:three_prime_UTR 30.0%
! CAAGACTTTGATAATTAGTC+AGG + tig0016715:22287-22306 Msa1359390:three_prime_UTR 30.0%
TGCAGTTGAACGATGAAAAA+TGG - tig0016715:20374-20393 None:intergenic 35.0%
!! GAGAGAACATTACTGATTCT+AGG - tig0016715:20494-20513 None:intergenic 35.0%
GTTGGATTCAAATGGAGATT+TGG - tig0016715:20564-20583 None:intergenic 35.0%
CGCAAAATGTTGGATTCAAA+TGG - tig0016715:20572-20591 None:intergenic 35.0%
CTTGATACTCGATTTCGTTA+CGG - tig0016715:20601-20620 None:intergenic 35.0%
!! TTTTGGAAGTGGGTAATTTC+GGG + tig0016715:20805-20824 Msa1359390:intron 35.0%
!! GTAATTTCGGGTTAGTGATT+TGG + tig0016715:20817-20836 Msa1359390:intron 35.0%
AACGATTTGAATTCTGTCAC+AGG - tig0016715:20883-20902 None:intergenic 35.0%
TTTATTGTTGAAGAGAGACC+TGG + tig0016715:20901-20920 Msa1359390:CDS 35.0%
TTACGATGAAGGGGAAATTT+GGG + tig0016715:20935-20954 Msa1359390:CDS 35.0%
TTTGAACATGTTCCTGCATA+TGG + tig0016715:21000-21019 Msa1359390:CDS 35.0%
CATATGGAGATGATAGTTCA+GGG + tig0016715:21016-21035 Msa1359390:CDS 35.0%
ATATGGAGATGATAGTTCAG+GGG + tig0016715:21017-21036 Msa1359390:CDS 35.0%
TCTTCATCTCAGTTTGATTG+TGG + tig0016715:21050-21069 Msa1359390:CDS 35.0%
GATTGTGGATATATCGAAAG+GGG + tig0016715:21065-21084 Msa1359390:CDS 35.0%
TTCTGAACATCCAAACTATC+AGG - tig0016715:21129-21148 None:intergenic 35.0%
AACAAATGTACAATAGGCAC+AGG - tig0016715:21232-21251 None:intergenic 35.0%
!! TTGTTGTTTGGTGGAAATGA+AGG + tig0016715:21247-21266 Msa1359390:intron 35.0%
ATTTGATGCGTTAAGAGTTG+TGG + tig0016715:21359-21378 Msa1359390:intron 35.0%
! TGATAGCTTAAGGATTTGCT+TGG + tig0016715:21473-21492 Msa1359390:intron 35.0%
CAGTAACCAAAGTGAAAACA+AGG - tig0016715:21555-21574 None:intergenic 35.0%
AACTACGCAAAGACTGAATT+TGG + tig0016715:21749-21768 Msa1359390:intron 35.0%
! CTGTTTAAATTGTTGGTTGC+AGG + tig0016715:21848-21867 Msa1359390:intron 35.0%
CAAAACTTCTCCTGAATCTT+AGG - tig0016715:21883-21902 None:intergenic 35.0%
ACACGAGTATATGATGAACA+AGG + tig0016715:21951-21970 Msa1359390:CDS 35.0%
!! AATTGAACTTCTAAGGTGGA+TGG + tig0016715:21978-21997 Msa1359390:CDS 35.0%
! TCTTTTGTGGAAAAATAGGC+TGG + tig0016715:22012-22031 Msa1359390:exon 35.0%
GAAAAATAGGCTGGTAAGTT+TGG + tig0016715:22021-22040 Msa1359390:exon 35.0%
! ACACCAAGTTTTACCATTGT+AGG + tig0016715:22063-22082 Msa1359390:three_prime_UTR 35.0%
CCGTAAGAATGTTAAGCATT+AGG + tig0016715:22159-22178 Msa1359390:three_prime_UTR 35.0%
! AACTCTCTGTTTTCGTACAT+GGG + tig0016715:22203-22222 Msa1359390:three_prime_UTR 35.0%
TGCAGTTGAACGATGAAAAA+TGG - tig0016715:20374-20393 None:intergenic 35.0%
!! GAGAGAACATTACTGATTCT+AGG - tig0016715:20494-20513 None:intergenic 35.0%
GTTGGATTCAAATGGAGATT+TGG - tig0016715:20564-20583 None:intergenic 35.0%
CGCAAAATGTTGGATTCAAA+TGG - tig0016715:20572-20591 None:intergenic 35.0%
CTTGATACTCGATTTCGTTA+CGG - tig0016715:20601-20620 None:intergenic 35.0%
!! TTTTGGAAGTGGGTAATTTC+GGG + tig0016715:20805-20824 Msa1359390:intron 35.0%
!! GTAATTTCGGGTTAGTGATT+TGG + tig0016715:20817-20836 Msa1359390:intron 35.0%
AACGATTTGAATTCTGTCAC+AGG - tig0016715:20883-20902 None:intergenic 35.0%
TTTATTGTTGAAGAGAGACC+TGG + tig0016715:20901-20920 Msa1359390:CDS 35.0%
TTACGATGAAGGGGAAATTT+GGG + tig0016715:20935-20954 Msa1359390:CDS 35.0%
TTTGAACATGTTCCTGCATA+TGG + tig0016715:21000-21019 Msa1359390:CDS 35.0%
CATATGGAGATGATAGTTCA+GGG + tig0016715:21016-21035 Msa1359390:CDS 35.0%
ATATGGAGATGATAGTTCAG+GGG + tig0016715:21017-21036 Msa1359390:CDS 35.0%
TCTTCATCTCAGTTTGATTG+TGG + tig0016715:21050-21069 Msa1359390:CDS 35.0%
GATTGTGGATATATCGAAAG+GGG + tig0016715:21065-21084 Msa1359390:CDS 35.0%
TTCTGAACATCCAAACTATC+AGG - tig0016715:21129-21148 None:intergenic 35.0%
AACAAATGTACAATAGGCAC+AGG - tig0016715:21232-21251 None:intergenic 35.0%
!! TTGTTGTTTGGTGGAAATGA+AGG + tig0016715:21247-21266 Msa1359390:intron 35.0%
ATTTGATGCGTTAAGAGTTG+TGG + tig0016715:21359-21378 Msa1359390:intron 35.0%
! TGATAGCTTAAGGATTTGCT+TGG + tig0016715:21473-21492 Msa1359390:intron 35.0%
CAGTAACCAAAGTGAAAACA+AGG - tig0016715:21555-21574 None:intergenic 35.0%
AACTACGCAAAGACTGAATT+TGG + tig0016715:21749-21768 Msa1359390:intron 35.0%
! CTGTTTAAATTGTTGGTTGC+AGG + tig0016715:21848-21867 Msa1359390:intron 35.0%
CAAAACTTCTCCTGAATCTT+AGG - tig0016715:21883-21902 None:intergenic 35.0%
ACACGAGTATATGATGAACA+AGG + tig0016715:21951-21970 Msa1359390:CDS 35.0%
!! AATTGAACTTCTAAGGTGGA+TGG + tig0016715:21978-21997 Msa1359390:CDS 35.0%
! TCTTTTGTGGAAAAATAGGC+TGG + tig0016715:22012-22031 Msa1359390:exon 35.0%
GAAAAATAGGCTGGTAAGTT+TGG + tig0016715:22021-22040 Msa1359390:exon 35.0%
! ACACCAAGTTTTACCATTGT+AGG + tig0016715:22063-22082 Msa1359390:three_prime_UTR 35.0%
CCGTAAGAATGTTAAGCATT+AGG + tig0016715:22159-22178 Msa1359390:three_prime_UTR 35.0%
! AACTCTCTGTTTTCGTACAT+GGG + tig0016715:22203-22222 Msa1359390:three_prime_UTR 35.0%
CGAATAAGAACAGACATGTC+TGG - tig0016715:20428-20447 None:intergenic 40.0%
AATGTTCTCTCTCAAACCTC+AGG + tig0016715:20503-20522 Msa1359390:CDS 40.0%
ACGGAGAATTCGCAAAATGT+TGG - tig0016715:20582-20601 None:intergenic 40.0%
GTTACGATGAAGGGGAAATT+TGG + tig0016715:20934-20953 Msa1359390:CDS 40.0%
TACGATGAAGGGGAAATTTG+GGG + tig0016715:20936-20955 Msa1359390:CDS 40.0%
GAACTATCATCTCCATATGC+AGG - tig0016715:21015-21034 None:intergenic 40.0%
GCATATGGAGATGATAGTTC+AGG + tig0016715:21015-21034 Msa1359390:CDS 40.0%
CACAATTGCAGCTACATCAA+TGG - tig0016715:21392-21411 None:intergenic 40.0%
CATTGATGTAGCTGCAATTG+TGG + tig0016715:21390-21409 Msa1359390:intron 40.0%
!!! ACGACACCTTGTTTTCACTT+TGG + tig0016715:21546-21565 Msa1359390:intron 40.0%
TGAATGCCTTCAAAACGACT+AGG - tig0016715:21798-21817 None:intergenic 40.0%
!!! TCGTTTTGAAGGCATTCAGT+TGG + tig0016715:21800-21819 Msa1359390:intron 40.0%
! GAATCTGAAGCCTAAGATTC+AGG + tig0016715:21870-21889 Msa1359390:CDS 40.0%
! GGATAGTCTCAAGTCTTTTG+TGG + tig0016715:21999-22018 Msa1359390:CDS 40.0%
ATGTTAAGCATTAGGAGGCA+AGG + tig0016715:22167-22186 Msa1359390:three_prime_UTR 40.0%
TGTTAAGCATTAGGAGGCAA+GGG + tig0016715:22168-22187 Msa1359390:three_prime_UTR 40.0%
! GAACTCTCTGTTTTCGTACA+TGG + tig0016715:22202-22221 Msa1359390:three_prime_UTR 40.0%
CGAATAAGAACAGACATGTC+TGG - tig0016715:20428-20447 None:intergenic 40.0%
AATGTTCTCTCTCAAACCTC+AGG + tig0016715:20503-20522 Msa1359390:CDS 40.0%
ACGGAGAATTCGCAAAATGT+TGG - tig0016715:20582-20601 None:intergenic 40.0%
GTTACGATGAAGGGGAAATT+TGG + tig0016715:20934-20953 Msa1359390:CDS 40.0%
TACGATGAAGGGGAAATTTG+GGG + tig0016715:20936-20955 Msa1359390:CDS 40.0%
GAACTATCATCTCCATATGC+AGG - tig0016715:21015-21034 None:intergenic 40.0%
GCATATGGAGATGATAGTTC+AGG + tig0016715:21015-21034 Msa1359390:CDS 40.0%
CACAATTGCAGCTACATCAA+TGG - tig0016715:21392-21411 None:intergenic 40.0%
CATTGATGTAGCTGCAATTG+TGG + tig0016715:21390-21409 Msa1359390:intron 40.0%
!!! ACGACACCTTGTTTTCACTT+TGG + tig0016715:21546-21565 Msa1359390:intron 40.0%
TGAATGCCTTCAAAACGACT+AGG - tig0016715:21798-21817 None:intergenic 40.0%
!!! TCGTTTTGAAGGCATTCAGT+TGG + tig0016715:21800-21819 Msa1359390:intron 40.0%
! GAATCTGAAGCCTAAGATTC+AGG + tig0016715:21870-21889 Msa1359390:CDS 40.0%
! GGATAGTCTCAAGTCTTTTG+TGG + tig0016715:21999-22018 Msa1359390:CDS 40.0%
ATGTTAAGCATTAGGAGGCA+AGG + tig0016715:22167-22186 Msa1359390:three_prime_UTR 40.0%
TGTTAAGCATTAGGAGGCAA+GGG + tig0016715:22168-22187 Msa1359390:three_prime_UTR 40.0%
! GAACTCTCTGTTTTCGTACA+TGG + tig0016715:22202-22221 Msa1359390:three_prime_UTR 40.0%
AGCTCTGTTACTGAAACCTG+AGG - tig0016715:20522-20541 None:intergenic 45.0%
! AGAATAGTGGGAACCTGATG+AGG - tig0016715:20638-20657 None:intergenic 45.0%
TGAGCAAGTGGTTACGATGA+AGG + tig0016715:20924-20943 Msa1359390:CDS 45.0%
GAGCAAGTGGTTACGATGAA+GGG + tig0016715:20925-20944 Msa1359390:CDS 45.0%
AGCAAGTGGTTACGATGAAG+GGG + tig0016715:20926-20945 Msa1359390:CDS 45.0%
GTGGATATATCGAAAGGGGA+AGG + tig0016715:21069-21088 Msa1359390:CDS 45.0%
GATATATCGAAAGGGGAAGG+TGG + tig0016715:21072-21091 Msa1359390:CDS 45.0%
CTGAAATCAGGTCCAAGGTA+AGG - tig0016715:21189-21208 None:intergenic 45.0%
CTTACCTTGGACCTGATTTC+AGG + tig0016715:21187-21206 Msa1359390:CDS 45.0%
CAAACCTGAAATCAGGTCCA+AGG - tig0016715:21194-21213 None:intergenic 45.0%
CGACTTTGCAGTCATAGTCA+AGG + tig0016715:21434-21453 Msa1359390:intron 45.0%
! GGAGAAGTTTTGCGAGTACT+TGG + tig0016715:21891-21910 Msa1359390:CDS 45.0%
AGCTCTGTTACTGAAACCTG+AGG - tig0016715:20522-20541 None:intergenic 45.0%
! AGAATAGTGGGAACCTGATG+AGG - tig0016715:20638-20657 None:intergenic 45.0%
TGAGCAAGTGGTTACGATGA+AGG + tig0016715:20924-20943 Msa1359390:CDS 45.0%
GAGCAAGTGGTTACGATGAA+GGG + tig0016715:20925-20944 Msa1359390:CDS 45.0%
AGCAAGTGGTTACGATGAAG+GGG + tig0016715:20926-20945 Msa1359390:CDS 45.0%
GTGGATATATCGAAAGGGGA+AGG + tig0016715:21069-21088 Msa1359390:CDS 45.0%
GATATATCGAAAGGGGAAGG+TGG + tig0016715:21072-21091 Msa1359390:CDS 45.0%
CTGAAATCAGGTCCAAGGTA+AGG - tig0016715:21189-21208 None:intergenic 45.0%
CTTACCTTGGACCTGATTTC+AGG + tig0016715:21187-21206 Msa1359390:CDS 45.0%
CAAACCTGAAATCAGGTCCA+AGG - tig0016715:21194-21213 None:intergenic 45.0%
CGACTTTGCAGTCATAGTCA+AGG + tig0016715:21434-21453 Msa1359390:intron 45.0%
! GGAGAAGTTTTGCGAGTACT+TGG + tig0016715:21891-21910 Msa1359390:CDS 45.0%
TGAATACGCTCCTCCTCATC+AGG + tig0016715:20622-20641 Msa1359390:CDS 50.0%
! ATAGTGGGAACCTGATGAGG+AGG - tig0016715:20635-20654 None:intergenic 50.0%
ATCGTAACCACTTGCTCACC+AGG - tig0016715:20922-20941 None:intergenic 50.0%
TAGAATTCGTCTGCTCAGCG+TGG + tig0016715:21103-21122 Msa1359390:CDS 50.0%
! ATGTCGACTAGGCCTTACCT+TGG + tig0016715:21174-21193 Msa1359390:CDS 50.0%
!! CGAAGGCCTAGTCGTTTTGA+AGG + tig0016715:21789-21808 Msa1359390:intron 50.0%
TTTGCGAGTACTTGGACGCA+AGG + tig0016715:21899-21918 Msa1359390:CDS 50.0%
TTGCGAGTACTTGGACGCAA+GGG + tig0016715:21900-21919 Msa1359390:CDS 50.0%
TGAATACGCTCCTCCTCATC+AGG + tig0016715:20622-20641 Msa1359390:CDS 50.0%
! ATAGTGGGAACCTGATGAGG+AGG - tig0016715:20635-20654 None:intergenic 50.0%
ATCGTAACCACTTGCTCACC+AGG - tig0016715:20922-20941 None:intergenic 50.0%
TAGAATTCGTCTGCTCAGCG+TGG + tig0016715:21103-21122 Msa1359390:CDS 50.0%
! ATGTCGACTAGGCCTTACCT+TGG + tig0016715:21174-21193 Msa1359390:CDS 50.0%
!! CGAAGGCCTAGTCGTTTTGA+AGG + tig0016715:21789-21808 Msa1359390:intron 50.0%
TTTGCGAGTACTTGGACGCA+AGG + tig0016715:21899-21918 Msa1359390:CDS 50.0%
TTGCGAGTACTTGGACGCAA+GGG + tig0016715:21900-21919 Msa1359390:CDS 50.0%
AGAGAGACCTGGTGAGCAAG+TGG + tig0016715:20912-20931 Msa1359390:CDS 55.0%
CTCAGCGTGGCCTGATAGTT+TGG + tig0016715:21116-21135 Msa1359390:CDS 55.0%
! AGCGAGGGAAGATGTCGACT+AGG + tig0016715:21163-21182 Msa1359390:CDS 55.0%
GTAGCTGCAATTGTGGTCGC+AGG + tig0016715:21397-21416 Msa1359390:intron 55.0%
TGCGAGTACTTGGACGCAAG+GGG + tig0016715:21901-21920 Msa1359390:CDS 55.0%
AGAGAGACCTGGTGAGCAAG+TGG + tig0016715:20912-20931 Msa1359390:CDS 55.0%
CTCAGCGTGGCCTGATAGTT+TGG + tig0016715:21116-21135 Msa1359390:CDS 55.0%
! AGCGAGGGAAGATGTCGACT+AGG + tig0016715:21163-21182 Msa1359390:CDS 55.0%
GTAGCTGCAATTGTGGTCGC+AGG + tig0016715:21397-21416 Msa1359390:intron 55.0%
TGCGAGTACTTGGACGCAAG+GGG + tig0016715:21901-21920 Msa1359390:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0016715 gene 20310 22359 20310 ID=Msa1359390;Name=Msa1359390
tig0016715 mRNA 20310 22359 20310 ID=Msa1359390-mRNA-1;Parent=Msa1359390;Name=Msa1359390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|3|330|233
tig0016715 exon 20310 20643 20310 ID=Msa1359390-mRNA-1:exon:11323;Parent=Msa1359390-mRNA-1
tig0016715 exon 20880 21208 20880 ID=Msa1359390-mRNA-1:exon:11324;Parent=Msa1359390-mRNA-1
tig0016715 exon 21870 22359 21870 ID=Msa1359390-mRNA-1:exon:11325;Parent=Msa1359390-mRNA-1
tig0016715 five_prime_UTR 20310 20430 20310 ID=Msa1359390-mRNA-1:five_prime_utr;Parent=Msa1359390-mRNA-1
tig0016715 CDS 20431 20643 20431 ID=Msa1359390-mRNA-1:cds;Parent=Msa1359390-mRNA-1
tig0016715 CDS 20880 21208 20880 ID=Msa1359390-mRNA-1:cds;Parent=Msa1359390-mRNA-1
tig0016715 CDS 21870 22029 21870 ID=Msa1359390-mRNA-1:cds;Parent=Msa1359390-mRNA-1
tig0016715 three_prime_UTR 22030 22359 22030 ID=Msa1359390-mRNA-1:three_prime_utr;Parent=Msa1359390-mRNA-1
Gene Sequence

>Msa1359390

ATGTCTGTTCTTATTCGAACAATTCAAATAGCTCATAGATTCAAACAAACATTTTCTTCACCTAGAATCAGTAATGTTCTCTCTCAAACCTCAGGTTTCAGTAACAGAGCTCACGTTGCAGAATCAGTTACCAAATCTCCATTTGAATCCAACATTTTGCGAATTCTCCGTAACGAAATCGAGTATCAAGCTGAATACGCTCCTCCTCATCAGCCTGTGACAGAATTCAAATCGTTTATTGTTGAAGAGAGACCTGGTGAGCAAGTGGTTACGATGAAGGGGAAATTTGGGGACAATGAAGATATCAAAATTGAAGCTACAATGTTTGATGGGTTTGAACATGTTCCTGCATATGGAGATGATAGTTCAGGGGTGAATGTGCGTCTTCATCTCAGTTTGATTGTGGATATATCGAAAGGGGAAGGTGGTAATGAATTAGAATTCGTCTGCTCAGCGTGGCCTGATAGTTTGGATGTTCAGAAAGTTTTCATGTTAAAGCGAGGGAAGATGTCGACTAGGCCTTACCTTGGACCTGATTTCAGGAATCTGAAGCCTAAGATTCAGGAGAAGTTTTGCGAGTACTTGGACGCAAGGGGAGTAAATAATGAGCTCTCTGCTTTCTTACACGAGTATATGATGAACAAGGATAGAATTGAACTTCTAAGGTGGATGGATAGTCTCAAGTCTTTTGTGGAAAAATAG

Protein sequence

>Msa1359390

MSVLIRTIQIAHRFKQTFSSPRISNVLSQTSGFSNRAHVAESVTKSPFESNILRILRNEIEYQAEYAPPHQPVTEFKSFIVEERPGEQVVTMKGKFGDNEDIKIEATMFDGFEHVPAYGDDSSGVNVRLHLSLIVDISKGEGGNELEFVCSAWPDSLDVQKVFMLKRGKMSTRPYLGPDFRNLKPKIQEKFCEYLDARGVNNELSAFLHEYMMNKDRIELLRWMDSLKSFVEK*