AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1159840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159840 MtrunA17_Chr7g0257031 91.346 312 23 2 1 310 1 310 0.0 502
Msa1159840 MtrunA17_Chr7g0256981 76.582 316 66 5 1 310 1 314 2.08e-152 429
Msa1159840 MtrunA17_Chr7g0257011 62.581 310 92 7 1 310 1 286 2.07e-120 347
Msa1159840 MtrunA17_Chr7g0256971 71.600 250 64 3 33 280 3 247 8.70e-118 340
Msa1159840 MtrunA17_Chr1g0172581 44.311 167 82 5 63 229 1 156 1.65e-34 124
Msa1159840 MtrunA17_Chr3g0085991 31.356 236 127 6 24 245 24 238 3.05e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159840 AT5G03990.1 40.314 191 89 3 1 169 1 188 1.37e-39 141
Msa1159840 AT3G51940.1 38.393 112 68 1 24 134 20 131 5.04e-23 99.0
Msa1159840 AT3G51940.2 41.414 99 57 1 37 134 37 135 1.33e-22 97.8
Msa1159840 AT5G03990.2 48.352 91 44 1 63 153 1 88 5.34e-20 87.4

Find 184 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTTGGAAGGTGATTT+TGG 0.160540 7_4:+49552532 Msa1159840:three_prime_UTR
TGTTGATTCTGAACTTTATT+TGG 0.166699 7_4:+49547134 Msa1159840:CDS
TTACACTGCAGTCTTGTAAT+TGG 0.206384 7_4:-49552953 None:intergenic
CATCCCAGAGCAGCATAATT+TGG 0.225014 7_4:-49547321 None:intergenic
AGAGCGTTAAAATTTAATAT+TGG 0.230109 7_4:-49551768 None:intergenic
CTTTCAGGTTGAGGGTATTA+TGG 0.237414 7_4:+49552438 Msa1159840:intron
GAAATAGTGGGAGAGGAAAT+TGG 0.249350 7_4:+49547511 Msa1159840:CDS
TCCTCTTCTGGTCTTGGATT+GGG 0.249489 7_4:+49547246 Msa1159840:CDS
GAGGGGAAAATTTGCTTATA+AGG 0.264683 7_4:+49547674 Msa1159840:CDS
AATCAGTCCTCTTCTGGTCT+TGG 0.266278 7_4:+49547240 Msa1159840:CDS
TGATTCTGGAAATGGATAAT+TGG 0.273700 7_4:+49545888 Msa1159840:exon
AAACCTGCTTATCTATTTGT+AGG 0.277089 7_4:+49552894 Msa1159840:three_prime_UTR
GAGCGTTAAAATTTAATATT+GGG 0.281130 7_4:-49551767 None:intergenic
TGCATCCCAAAGTGGTAAAC+TGG 0.283430 7_4:+49546980 Msa1159840:CDS
CTCTTGAATCAGTCCTCTTC+TGG 0.284774 7_4:+49547234 Msa1159840:CDS
GGAGGAAGAGGAGGAGGTGG+GGG 0.291481 7_4:+49547648 Msa1159840:CDS
AATGGAGGAAGAGGAGGAGG+TGG 0.306932 7_4:+49547645 Msa1159840:CDS
AGATTTAGTCCAAAAGCATT+TGG 0.322232 7_4:+49552111 Msa1159840:three_prime_UTR
ACATATACTAAGAGAAAATA+AGG 0.322979 7_4:-49552987 None:intergenic
GATTTAGTCCAAAAGCATTT+GGG 0.325462 7_4:+49552112 Msa1159840:three_prime_UTR
TCGTCCCAGTTTACCACTTT+GGG 0.328360 7_4:-49546985 None:intergenic
AAAGAATATGGATGGCAAAA+TGG 0.329913 7_4:+49547417 Msa1159840:CDS
AAATAGTGGGAGAGGAAATT+GGG 0.332117 7_4:+49547512 Msa1159840:CDS
TGACCCTCTAGCAGCTTCAT+AGG 0.340644 7_4:-49547756 None:intergenic
GAGAAAACATGATGATGATT+TGG 0.343004 7_4:-49545729 None:intergenic
GAACATGCTGCAAAAGAATA+TGG 0.344072 7_4:+49547405 Msa1159840:CDS
GGCCAAATCGGTATCAAGTT+TGG 0.345618 7_4:+49552519 Msa1159840:three_prime_UTR
TTGAATGTTATAGGAACTAT+TGG 0.346954 7_4:+49549941 Msa1159840:intron
CGCCCCAACATAGAAGAAAA+AGG 0.348181 7_4:+49547180 Msa1159840:CDS
GTCCTCTTCTGGTCTTGGAT+TGG 0.351125 7_4:+49547245 Msa1159840:CDS
TTCCAAACTTGATACCGATT+TGG 0.351407 7_4:-49552521 None:intergenic
GCAAACTGCATTGAAGTTAC+TGG 0.358277 7_4:+49552830 Msa1159840:three_prime_UTR
TGGAGGAAGAGGAGGAGGTG+GGG 0.358688 7_4:+49547647 Msa1159840:CDS
AAGGAGCTTAACTAGTGGTT+TGG 0.361559 7_4:+49549970 Msa1159840:three_prime_UTR
GAATTGATCAAGTTCACAAT+TGG 0.372339 7_4:-49551886 None:intergenic
AGAACCGGAGGTCGTTGATT+TGG 0.373138 7_4:+49552557 Msa1159840:three_prime_UTR
GGATTGGGACCTACTGGATG+GGG 0.378858 7_4:+49547261 Msa1159840:CDS
CCTTTCACTTGTGGAGTCAA+TGG 0.382583 7_4:+49548574 Msa1159840:three_prime_UTR
AATAGAGGAGGAAGAAGAAA+TGG 0.384129 7_4:+49547627 Msa1159840:CDS
TATAACGGAAAACCACCTTT+AGG 0.390153 7_4:+49545968 Msa1159840:CDS
TGAACCAAATTATGCTGCTC+TGG 0.390673 7_4:+49547317 Msa1159840:CDS
ACATCATCTATGTAAATGTT+AGG 0.394819 7_4:-49547096 None:intergenic
TATTGATTATGATGCTTCAT+TGG 0.398217 7_4:+49551516 Msa1159840:three_prime_UTR
GATTGGGACCTACTGGATGG+GGG 0.403956 7_4:+49547262 Msa1159840:CDS
TGCTGAACATTTGGTGATCA+TGG 0.405689 7_4:+49548637 Msa1159840:three_prime_UTR
AAAATTCTAGACACTTTAAG+AGG 0.406500 7_4:+49551793 Msa1159840:three_prime_UTR
GGAGAGGAAATTGGGGAACA+TGG 0.411161 7_4:+49547520 Msa1159840:CDS
ATGGAGGAAGAGGAGGAGGT+GGG 0.413896 7_4:+49547646 Msa1159840:CDS
TCATGATTGTGCTGAACATT+TGG 0.414310 7_4:+49548628 Msa1159840:three_prime_UTR
GGAAGAAGAAATGGAGGAAG+AGG 0.415987 7_4:+49547636 Msa1159840:CDS
GTATTGAATGATAAATATAA+TGG 0.415992 7_4:-49552069 None:intergenic
GAGGAAACTAACTTTATTGA+AGG 0.419178 7_4:+49552609 Msa1159840:three_prime_UTR
GGTCTTGGATTGGGACCTAC+TGG 0.427547 7_4:+49547255 Msa1159840:CDS
AAATGATGACTCAATCAGTA+TGG 0.427788 7_4:+49551940 Msa1159840:three_prime_UTR
TTCGGAGTTGCTATGAATCA+AGG 0.428178 7_4:+49551906 Msa1159840:three_prime_UTR
AAATGGTCAGAATGATTCTC+AGG 0.431182 7_4:+49547434 Msa1159840:CDS
ATCTGGTGCTTTCAGGTTGA+GGG 0.431735 7_4:+49552430 Msa1159840:intron
GTCGTCCCAGTTTACCACTT+TGG 0.436251 7_4:-49546986 None:intergenic
TGGAATCAGAGGGAGCGATA+TGG 0.436926 7_4:+49547459 Msa1159840:CDS
AATTGTGAACTTGATCAATT+CGG 0.436980 7_4:+49551888 Msa1159840:three_prime_UTR
TGTGTTCATTAGTCAAAGAA+AGG 0.438311 7_4:+49552928 Msa1159840:three_prime_UTR
AAAATAATGAAACAAACTCT+TGG 0.438543 7_4:+49547361 Msa1159840:CDS
GGTTTCCAACAGTGCCTTTG+TGG 0.441064 7_4:+49546884 Msa1159840:CDS
TTGGATTGGGACCTACTGGA+TGG 0.441158 7_4:+49547259 Msa1159840:CDS
AAGTATCAAGGAAGAAATAG+TGG 0.441466 7_4:+49547498 Msa1159840:CDS
TGGATTGGGACCTACTGGAT+GGG 0.442806 7_4:+49547260 Msa1159840:CDS
TTGAGAATATGATTGCAGTT+AGG 0.449399 7_4:-49552784 None:intergenic
ATAGATAAGCAGGTTTCAAA+TGG 0.457100 7_4:-49552887 None:intergenic
TTTCCTACAAATAGATAAGC+AGG 0.457340 7_4:-49552897 None:intergenic
ATCAGGCAATGGTGTGTCCC+AGG 0.459194 7_4:-49547073 None:intergenic
TCTAATGCACTCTCTACATC+AGG 0.462195 7_4:-49548551 None:intergenic
GGATATAAGTTATGTTATCT+AGG 0.463348 7_4:+49547797 Msa1159840:three_prime_UTR
CTTTCACTTGTGGAGTCAAT+GGG 0.464147 7_4:+49548575 Msa1159840:three_prime_UTR
AGAAATGGAGGAAGAGGAGG+AGG 0.467887 7_4:+49547642 Msa1159840:CDS
CTGAGATCAACAACATTCCC+TGG 0.470295 7_4:+49547055 Msa1159840:CDS
AAATAATGAAACAAACTCTT+GGG 0.477297 7_4:+49547362 Msa1159840:CDS
AAAGACTGAACTGGCCAAAT+CGG 0.478619 7_4:+49552507 Msa1159840:three_prime_UTR
TCTATGTAAATGTTAGGATC+AGG 0.480083 7_4:-49547090 None:intergenic
TTCTGAACTTTATTTGGATG+TGG 0.480333 7_4:+49547140 Msa1159840:CDS
GGAAATTGGGGAACATGGGA+TGG 0.480974 7_4:+49547525 Msa1159840:CDS
AGATCCTCCATGGACATTTG+TGG 0.481453 7_4:-49552758 None:intergenic
AATTGATCAAGTTCACAATT+GGG 0.483254 7_4:-49551885 None:intergenic
ATAATTTCCATAAACTGATA+AGG 0.486430 7_4:-49551591 None:intergenic
TGCATTAGACCTTTCACTTG+TGG 0.489679 7_4:+49548565 Msa1159840:three_prime_UTR
CAAATTATGCTGCTCTGGGA+TGG 0.490209 7_4:+49547322 Msa1159840:CDS
GTTGATTTGGCTTGTGAACA+TGG 0.491255 7_4:+49552570 Msa1159840:three_prime_UTR
GGTGATCAAAACTGAAGATA+AGG 0.491687 7_4:+49552218 Msa1159840:three_prime_UTR
CTTCGGTGGGCACAGTTCCA+TGG 0.492493 7_4:+49546923 Msa1159840:CDS
AGAAAGAAAACAACATGTCT+TGG 0.492809 7_4:+49547559 Msa1159840:CDS
TATACTAGCACTGGCAGCAA+TGG 0.495722 7_4:+49552483 Msa1159840:three_prime_UTR
GGTTGATACATTAACAAAAG+TGG 0.495995 7_4:+49548658 Msa1159840:three_prime_UTR
AGAGGAGGAAGAAGAAATGG+AGG 0.503196 7_4:+49547630 Msa1159840:CDS
GTTTCCAACAGTGCCTTTGT+GGG 0.503784 7_4:+49546885 Msa1159840:CDS
CAAGGAAGAAATAGTGGGAG+AGG 0.507156 7_4:+49547504 Msa1159840:CDS
CTCCATGGACATTTGTGGAC+GGG 0.508645 7_4:-49552753 None:intergenic
AGCAATGGAAAAGACTGAAC+TGG 0.509467 7_4:+49552498 Msa1159840:three_prime_UTR
TATATGTGGAAATATGTCTC+AGG 0.509832 7_4:+49551546 Msa1159840:three_prime_UTR
CAGTTTGCTCATCTACAGAA+TGG 0.510267 7_4:-49552815 None:intergenic
ATTGGGACCTACTGGATGGG+GGG 0.510955 7_4:+49547263 Msa1159840:CDS
AGAAGAAATGGAGGAAGAGG+AGG 0.513878 7_4:+49547639 Msa1159840:CDS
GCAGCATAATTTGGTTCAGA+AGG 0.514407 7_4:-49547312 None:intergenic
AATGAGTATCAGATGAATAG+AGG 0.514889 7_4:+49547612 Msa1159840:CDS
TCCTCCTTCTCATCCTATAA+CGG 0.515407 7_4:+49545953 Msa1159840:CDS
CCATCATCAAGTGGGTCAGT+GGG 0.517302 7_4:+49545928 Msa1159840:CDS
CCCACTGACCCACTTGATGA+TGG 0.517715 7_4:-49545928 None:intergenic
AGGAAACTAACTTTATTGAA+GGG 0.519973 7_4:+49552610 Msa1159840:three_prime_UTR
AATCATGATTTGAGATGAGC+GGG 0.521687 7_4:-49548613 None:intergenic
GGAGAGGCGGCTGTGACTCT+AGG 0.522716 7_4:+49547201 Msa1159840:CDS
AAATTATGCTGCTCTGGGAT+GGG 0.527002 7_4:+49547323 Msa1159840:CDS
GAGAGGAAATTGGGGAACAT+GGG 0.531170 7_4:+49547521 Msa1159840:CDS
CAAGAGGAAAGATTAAGAAA+AGG 0.533714 7_4:+49551488 Msa1159840:three_prime_UTR
TCTTTCCTCTTGGATGACTG+TGG 0.539172 7_4:-49551477 None:intergenic
GTCAGAATGATTCTCAGGGA+TGG 0.540162 7_4:+49547439 Msa1159840:CDS
GGTTCCTCTAGAACACTTTG+TGG 0.551877 7_4:-49550007 None:intergenic
GAACCAAATTATGCTGCTCT+GGG 0.563912 7_4:+49547318 Msa1159840:CDS
CAAGCCAAATCAACGACCTC+CGG 0.564412 7_4:-49552561 None:intergenic
ATTAATGTACATATGTCTCT+AGG 0.564681 7_4:-49551705 None:intergenic
GACTTGTATAACAAGTATCA+AGG 0.564906 7_4:+49547486 Msa1159840:CDS
TAAAGGAACTCACAATCTTG+TGG 0.566067 7_4:-49550031 None:intergenic
ACCATCATCAAGTGGGTCAG+TGG 0.567874 7_4:+49545927 Msa1159840:CDS
GGAAACTAACTTTATTGAAG+GGG 0.567917 7_4:+49552611 Msa1159840:three_prime_UTR
TTCCCGTCCACAAATGTCCA+TGG 0.570370 7_4:+49552751 Msa1159840:three_prime_UTR
ATCTTCATTTACCATGCACT+AGG 0.571296 7_4:-49547705 None:intergenic
TGGATCTGTAGACGTGGTTG+TGG 0.571892 7_4:+49548678 Msa1159840:three_prime_UTR
TCTTCTATTAGCTTTCGCCA+TGG 0.571899 7_4:-49546940 None:intergenic
TCCCAATCCAAGACCAGAAG+AGG 0.573717 7_4:-49547247 None:intergenic
AATGCTGTGGAGTGCAAGCA+AGG 0.582656 7_4:+49547730 Msa1159840:three_prime_UTR
ATTTAGTCCAAAAGCATTTG+GGG 0.585174 7_4:+49552113 Msa1159840:three_prime_UTR
TGTACATTAATAGTCTTCAC+AGG 0.586909 7_4:+49551717 Msa1159840:three_prime_UTR
AAGAACCATGGATATCATCA+TGG 0.588202 7_4:+49547585 Msa1159840:CDS
AATAGTGGGAGAGGAAATTG+GGG 0.595211 7_4:+49547513 Msa1159840:CDS
TAGGAACTATTGGAAGGAGA+AGG 0.595461 7_4:+49549951 Msa1159840:intron
ATGCTGCAAAAGAATATGGA+TGG 0.597894 7_4:+49547409 Msa1159840:CDS
TCAGGCAATGGTGTGTCCCA+GGG 0.599621 7_4:-49547072 None:intergenic
TAGTGCCATGATGATATCCA+TGG 0.599866 7_4:-49547590 None:intergenic
ATGTTATAGGAACTATTGGA+AGG 0.600671 7_4:+49549945 Msa1159840:intron
ATTCTCAGGGATGGAATCAG+AGG 0.601746 7_4:+49547448 Msa1159840:CDS
AAGTTACTAGATAATCAGAC+AGG 0.603823 7_4:+49551679 Msa1159840:three_prime_UTR
CAATCATGATTTGAGATGAG+CGG 0.605123 7_4:-49548614 None:intergenic
GAGTATCAGATGAATAGAGG+AGG 0.605987 7_4:+49547615 Msa1159840:CDS
CCATTGACTCCACAAGTGAA+AGG 0.606787 7_4:-49548574 None:intergenic
TAACTGCAATCATATTCTCA+AGG 0.609724 7_4:+49552786 Msa1159840:three_prime_UTR
GCATCCCAAAGTGGTAAACT+GGG 0.611168 7_4:+49546981 Msa1159840:CDS
CCTCCATGGACATTTGTGGA+CGG 0.616617 7_4:-49552754 None:intergenic
AGTTAGGCTTAGATCCTCCA+TGG 0.617357 7_4:-49552768 None:intergenic
CAAAAGTGGATCTGTAGACG+TGG 0.617423 7_4:+49548672 Msa1159840:three_prime_UTR
CAATACTGTCTCACGTACAC+AGG 0.620069 7_4:+49552086 Msa1159840:three_prime_UTR
AAACCTATGAAGCTGCTAGA+GGG 0.620303 7_4:+49547753 Msa1159840:three_prime_UTR
TGGACTCGTTATTAAAGATG+AGG 0.620939 7_4:+49552590 Msa1159840:three_prime_UTR
GAAAGCTAATAGAAGACAAG+AGG 0.621891 7_4:+49546947 Msa1159840:CDS
AGTATCAAGGAAGAAATAGT+GGG 0.622344 7_4:+49547499 Msa1159840:CDS
GGACGACTCTGCTGTCAAAG+AGG 0.623703 7_4:+49547002 Msa1159840:CDS
AAATTCTAGACACTTTAAGA+GGG 0.624707 7_4:+49551794 Msa1159840:three_prime_UTR
GGATGTGGAAATAGAAGCAG+AGG 0.625331 7_4:+49547155 Msa1159840:CDS
TGAGATCAACAACATTCCCT+GGG 0.626226 7_4:+49547056 Msa1159840:CDS
AAATCGGTATCAAGTTTGGA+AGG 0.627405 7_4:+49552523 Msa1159840:three_prime_UTR
GAAACCTATGAAGCTGCTAG+AGG 0.627786 7_4:+49547752 Msa1159840:three_prime_UTR
TCCGTTATAGGATGAGAAGG+AGG 0.628511 7_4:-49545954 None:intergenic
TCATTGGTGATGTCTATATG+TGG 0.628680 7_4:+49551532 Msa1159840:three_prime_UTR
AATGGTCAGAATGATTCTCA+GGG 0.628914 7_4:+49547435 Msa1159840:CDS
TGTGCCACAAAGTGTTCTAG+AGG 0.631627 7_4:+49550003 Msa1159840:three_prime_UTR
CCTCAGTAACCATCATCAAG+TGG 0.635467 7_4:+49545919 Msa1159840:CDS
ATGTCTTGGTCTAAGAACCA+TGG 0.637891 7_4:+49547573 Msa1159840:CDS
CAGAAGAGGACTGATTCAAG+AGG 0.638374 7_4:-49547233 None:intergenic
AATCAGAGGGAGCGATATGG+TGG 0.639116 7_4:+49547462 Msa1159840:CDS
TTCTCAGGGATGGAATCAGA+GGG 0.642433 7_4:+49547449 Msa1159840:CDS
CATGTATATGCATCCCAAAG+TGG 0.643906 7_4:+49546972 Msa1159840:CDS
CCACTTGATGATGGTTACTG+AGG 0.646881 7_4:-49545919 None:intergenic
CTCAGTAACCATCATCAAGT+GGG 0.647444 7_4:+49545920 Msa1159840:CDS
AGGTTGCTACTCCTAGTGCA+TGG 0.652070 7_4:+49547694 Msa1159840:CDS
ATGGAAGAAGTCACACGTGG+TGG 0.654788 7_4:+49552147 Msa1159840:three_prime_UTR
AGGAACTCACAATCTTGTGG+AGG 0.655548 7_4:-49550028 None:intergenic
TTTAGTCCAAAAGCATTTGG+GGG 0.660428 7_4:+49552114 Msa1159840:three_prime_UTR
TATTATGGTCTGTGTGCAAG+TGG 0.667807 7_4:+49552453 Msa1159840:three_prime_UTR
GGGCGTTACACTAACTAACA+TGG 0.671858 7_4:+49551814 Msa1159840:three_prime_UTR
CATCATCAAGTGGGTCAGTG+GGG 0.675320 7_4:+49545929 Msa1159840:CDS
TCAAAACTGAAGATAAGGCG+AGG 0.683853 7_4:+49552223 Msa1159840:three_prime_UTR
CAGGTCCACAGTCATCCAAG+AGG 0.685142 7_4:+49551472 Msa1159840:intron
TAAATGTTAGGATCAGGCAA+TGG 0.686387 7_4:-49547084 None:intergenic
AGAATGAACGAACCTAAAGG+TGG 0.691864 7_4:-49545980 None:intergenic
AGGAGAAGGAGCTTAACTAG+TGG 0.693930 7_4:+49549965 Msa1159840:three_prime_UTR
CCGTCCACAAATGTCCATGG+AGG 0.723653 7_4:+49552754 Msa1159840:three_prime_UTR
TAAATGAAGATCGAATGCTG+TGG 0.769907 7_4:+49547717 Msa1159840:exon
TTTATGGAAGAAGTCACACG+TGG 0.776921 7_4:+49552144 Msa1159840:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAAATTTTGGAAAAA+GGG - chr7_4:49545795-49545814 None:intergenic 10.0%
!!! AATTAATAAATTTTGGAAAA+AGG - chr7_4:49545796-49545815 None:intergenic 10.0%
!!! AAGCAAAAATTAATAAATTT+TGG - chr7_4:49545803-49545822 None:intergenic 10.0%
!!! TTACTATATAGATTTTTTTT+CGG - chr7_4:49548061-49548080 None:intergenic 10.0%
!!! TTTCTTTTGATTTTTAATAT+AGG + chr7_4:49548351-49548370 Msa1159840:intron 10.0%
!!! CTATCATTTTTTAAAATTTT+AGG - chr7_4:49549159-49549178 None:intergenic 10.0%
!!! AAAATTTTAAAAAATGATAG+AGG + chr7_4:49549159-49549178 Msa1159840:intron 10.0%
!!! TTTTTTTAAAAAAATGTGTA+TGG + chr7_4:49550258-49550277 Msa1159840:intron 10.0%
!! TATAACTAAATAATTTATTG+AGG + chr7_4:49552278-49552297 Msa1159840:intron 10.0%
!!! TGAAAAAGTTTTATTGAAAA+CGG - chr7_4:49545842-49545861 None:intergenic 15.0%
!!! GTTTTTTGGTTTTAAAAATT+GGG + chr7_4:49546233-49546252 Msa1159840:intron 15.0%
!!! TTTTTTGGTTTTAAAAATTG+GGG + chr7_4:49546234-49546253 Msa1159840:intron 15.0%
!!! ATTGATTCTATTTATTCTTT+TGG + chr7_4:49546848-49546867 Msa1159840:intron 15.0%
!! TGATGTTATATAAGAATAAT+GGG + chr7_4:49547831-49547850 Msa1159840:intron 15.0%
!!! TACTATATAGATTTTTTTTC+GGG - chr7_4:49548060-49548079 None:intergenic 15.0%
!! TAAAATAATTACTGATATGT+TGG - chr7_4:49548117-49548136 None:intergenic 15.0%
!!! ATAAATTATGTTCATTTTGT+TGG + chr7_4:49548511-49548530 Msa1159840:intron 15.0%
!! AAGAAATATATCTTGAAATA+TGG + chr7_4:49548919-49548938 Msa1159840:intron 15.0%
!! ATATATTCTCATAGATAATT+CGG - chr7_4:49549384-49549403 None:intergenic 15.0%
!!! TTGGAAATTTGTTAAATATT+TGG + chr7_4:49550301-49550320 Msa1159840:intron 15.0%
!! TAGAATAATAGATTATGATT+TGG + chr7_4:49550512-49550531 Msa1159840:intron 15.0%
!! ATGAATAAATATGCAAATAT+CGG + chr7_4:49550678-49550697 Msa1159840:intron 15.0%
!!! TAATGTAAATTACACTTTTA+AGG + chr7_4:49550758-49550777 Msa1159840:intron 15.0%
!!! TTAATTGATTTATTGAATTG+TGG + chr7_4:49551034-49551053 Msa1159840:intron 15.0%
!! TGAAAAATAATAAATGGAAT+GGG - chr7_4:49551454-49551473 None:intergenic 15.0%
!! GTATTGAATGATAAATATAA+TGG - chr7_4:49552072-49552091 None:intergenic 15.0%
!! TGCAACAAAACAAATTTAAA+AGG - chr7_4:49546060-49546079 None:intergenic 20.0%
!!! GGTTTTTTGGTTTTAAAAAT+TGG + chr7_4:49546232-49546251 Msa1159840:intron 20.0%
!! ATAAGCAATTTAATGACATA+GGG - chr7_4:49546431-49546450 None:intergenic 20.0%
!! AATAAGCAATTTAATGACAT+AGG - chr7_4:49546432-49546451 None:intergenic 20.0%
!!! AGAATCAATTGATAGTTTAA+GGG - chr7_4:49546837-49546856 None:intergenic 20.0%
!!! TAGAATCAATTGATAGTTTA+AGG - chr7_4:49546838-49546857 None:intergenic 20.0%
!!! TTGTTTCATTATTTTCATGT+TGG - chr7_4:49547356-49547375 None:intergenic 20.0%
!! AAAATAATGAAACAAACTCT+TGG + chr7_4:49547361-49547380 Msa1159840:CDS 20.0%
!! AAATAATGAAACAAACTCTT+GGG + chr7_4:49547362-49547381 Msa1159840:CDS 20.0%
!! GTGATGTTATATAAGAATAA+TGG + chr7_4:49547830-49547849 Msa1159840:intron 20.0%
!! TATATCAATAAGAACTCATT+AGG - chr7_4:49548086-49548105 None:intergenic 20.0%
!!! ACATAATTTATTAGTTTGAC+AGG - chr7_4:49548502-49548521 None:intergenic 20.0%
!! TACGATTAAGAAACAAATAT+TGG - chr7_4:49548891-49548910 None:intergenic 20.0%
!!! AGTATCTTAGATGATATTTT+AGG - chr7_4:49548953-49548972 None:intergenic 20.0%
!! TATTAACTGTTAATATACCT+TGG - chr7_4:49549013-49549032 None:intergenic 20.0%
!!! TCTTCCTTTAAAAAAATCTT+TGG - chr7_4:49549437-49549456 None:intergenic 20.0%
!!! TTAACTTGTTTGAATGTTAT+AGG + chr7_4:49549932-49549951 Msa1159840:intron 20.0%
!! TATCAATCTAATAGCATAAT+TGG - chr7_4:49550084-49550103 None:intergenic 20.0%
!!! ATTCTAGAATATATTAGCAA+GGG - chr7_4:49550163-49550182 None:intergenic 20.0%
!!! AATTCTAGAATATATTAGCA+AGG - chr7_4:49550164-49550183 None:intergenic 20.0%
!! TAAAAAAATGTGTATGGTTT+CGG + chr7_4:49550264-49550283 Msa1159840:intron 20.0%
!! TTTAACAAATTTCCAATTTC+CGG - chr7_4:49550297-49550316 None:intergenic 20.0%
!! TATTAATACACATAGCAATA+TGG - chr7_4:49550462-49550481 None:intergenic 20.0%
!!! TATGTTGATAAATATGCTTA+TGG + chr7_4:49550608-49550627 Msa1159840:intron 20.0%
!!! ACACTTTTAAGGTAATATAA+TGG + chr7_4:49550769-49550788 Msa1159840:intron 20.0%
!! CTACCATAATGTATATATAT+TGG + chr7_4:49550863-49550882 Msa1159840:intron 20.0%
!! ACACCAATATATATACATTA+TGG - chr7_4:49550869-49550888 None:intergenic 20.0%
!!! AAATATTCACTTCTCTAAAA+TGG - chr7_4:49550959-49550978 None:intergenic 20.0%
!!! TTAATTTTACGAATAAACTC+AGG - chr7_4:49551232-49551251 None:intergenic 20.0%
!! TTAAGTTATGATATGATTAC+AGG + chr7_4:49551317-49551336 Msa1159840:intron 20.0%
!! CTGAAAAATAATAAATGGAA+TGG - chr7_4:49551455-49551474 None:intergenic 20.0%
!!! CATTCCATTTATTATTTTTC+AGG + chr7_4:49551453-49551472 Msa1159840:intron 20.0%
!! ATAATTTCCATAAACTGATA+AGG - chr7_4:49551594-49551613 None:intergenic 20.0%
!! GAGCGTTAAAATTTAATATT+GGG - chr7_4:49551770-49551789 None:intergenic 20.0%
!!! AGAGCGTTAAAATTTAATAT+TGG - chr7_4:49551771-49551790 None:intergenic 20.0%
!! ATAACAAAAACTAAGAGTTT+GGG - chr7_4:49551983-49552002 None:intergenic 20.0%
!!! TATATATTTGAAATACCATC+AGG + chr7_4:49552246-49552265 Msa1159840:intron 20.0%
!! GAAAAGAATTAAAACAAGAT+TGG - chr7_4:49552398-49552417 None:intergenic 20.0%
!!! AAGACGTTATCTTTAAAAAT+TGG + chr7_4:49552713-49552732 Msa1159840:three_prime_UTR 20.0%
!!! AGACGTTATCTTTAAAAATT+GGG + chr7_4:49552714-49552733 Msa1159840:three_prime_UTR 20.0%
!! ACATATACTAAGAGAAAATA+AGG - chr7_4:49552990-49553009 None:intergenic 20.0%
!!! TTTGATTTTTGTTTGACTAA+GGG - chr7_4:49553014-49553033 None:intergenic 20.0%
!!! ACTTTTTCAATTATCTCTTC+TGG + chr7_4:49545853-49545872 Msa1159840:five_prime_UTR 25.0%
!!! CTTTTTCAATTATCTCTTCT+GGG + chr7_4:49545854-49545873 Msa1159840:five_prime_UTR 25.0%
!!! TTATCTTTTGATTCTGGAAA+TGG + chr7_4:49545880-49545899 Msa1159840:exon 25.0%
!!! TGATCACTTTACTTTTGAAT+TGG + chr7_4:49546200-49546219 Msa1159840:intron 25.0%
! AATATCTAGAAATCATCTCT+TGG + chr7_4:49546386-49546405 Msa1159840:intron 25.0%
!!! ACATGAATCTGTTTTGATTA+TGG + chr7_4:49546484-49546503 Msa1159840:intron 25.0%
!! ATCTGAAAATGTCTTGATTT+TGG + chr7_4:49546516-49546535 Msa1159840:intron 25.0%
! ACATTCTTCTTTATACTAAC+TGG + chr7_4:49546660-49546679 Msa1159840:intron 25.0%
! ACATCATCTATGTAAATGTT+AGG - chr7_4:49547099-49547118 None:intergenic 25.0%
!!! TGTTGATTCTGAACTTTATT+TGG + chr7_4:49547134-49547153 Msa1159840:CDS 25.0%
! GGATATAAGTTATGTTATCT+AGG + chr7_4:49547797-49547816 Msa1159840:three_prime_UTR 25.0%
! TAATATCAGTACTAATGCAT+TGG - chr7_4:49547943-49547962 None:intergenic 25.0%
! ATCAAATCAATAACAGTTTC+AGG - chr7_4:49548832-49548851 None:intergenic 25.0%
!!! GAAACTGTTATTGATTTGAT+AGG + chr7_4:49548832-49548851 Msa1159840:intron 25.0%
!! TAGATAAGTAACTAACTTGT+TGG - chr7_4:49549267-49549286 None:intergenic 25.0%
! AAATAGCTGACATAGATAAA+TGG - chr7_4:49549359-49549378 None:intergenic 25.0%
! TATGAGAATATATTGAACCA+AGG + chr7_4:49549391-49549410 Msa1159840:intron 25.0%
! ATGAGAATATATTGAACCAA+GGG + chr7_4:49549392-49549411 Msa1159840:intron 25.0%
!! CCTTTAAAAAAATCTTTGGA+TGG - chr7_4:49549433-49549452 None:intergenic 25.0%
!!! CCATCCAAAGATTTTTTTAA+AGG + chr7_4:49549430-49549449 Msa1159840:intron 25.0%
! TTGAATGTTATAGGAACTAT+TGG + chr7_4:49549941-49549960 Msa1159840:intron 25.0%
!! AAATCATGATTTTGAGCTTT+AGG + chr7_4:49550103-49550122 Msa1159840:intron 25.0%
!!! AATATATTAGCAAGGGTATT+AGG - chr7_4:49550156-49550175 None:intergenic 25.0%
!!! GATTGAACTTTTCATTTTTC+CGG + chr7_4:49550392-49550411 Msa1159840:intron 25.0%
!! GAGGTTCTTATAACAATTTT+CGG - chr7_4:49550426-49550445 None:intergenic 25.0%
!!! AGATTATGATTTGGTACATT+AGG + chr7_4:49550521-49550540 Msa1159840:intron 25.0%
!! TATGGTAATGTAGAAATTAG+AGG + chr7_4:49550626-49550645 Msa1159840:intron 25.0%
! AGGATTTACATAACACATTT+CGG - chr7_4:49550832-49550851 None:intergenic 25.0%
! TGGACCTGAAAAATAATAAA+TGG - chr7_4:49551460-49551479 None:intergenic 25.0%
!! TATTGATTATGATGCTTCAT+TGG + chr7_4:49551516-49551535 Msa1159840:three_prime_UTR 25.0%
!! TTTTAGTCCTTATCAGTTTA+TGG + chr7_4:49551584-49551603 Msa1159840:three_prime_UTR 25.0%
! ATTAATGTACATATGTCTCT+AGG - chr7_4:49551708-49551727 None:intergenic 25.0%
! AAAATTCTAGACACTTTAAG+AGG + chr7_4:49551793-49551812 Msa1159840:three_prime_UTR 25.0%
!! AAATTCTAGACACTTTAAGA+GGG + chr7_4:49551794-49551813 Msa1159840:three_prime_UTR 25.0%
!! TTCAACAATTTTATCATTCG+AGG + chr7_4:49551848-49551867 Msa1159840:three_prime_UTR 25.0%
! AATTGATCAAGTTCACAATT+GGG - chr7_4:49551888-49551907 None:intergenic 25.0%
! AATTGTGAACTTGATCAATT+CGG + chr7_4:49551888-49551907 Msa1159840:three_prime_UTR 25.0%
! GATAACAAAAACTAAGAGTT+TGG - chr7_4:49551984-49552003 None:intergenic 25.0%
!!! TTAAAACAAGATTGGTCTTT+GGG - chr7_4:49552390-49552409 None:intergenic 25.0%
!!! ATTAAAACAAGATTGGTCTT+TGG - chr7_4:49552391-49552410 None:intergenic 25.0%
! AGGAAACTAACTTTATTGAA+GGG + chr7_4:49552610-49552629 Msa1159840:three_prime_UTR 25.0%
!!! CTTTGATTTTTGTTTGACTA+AGG - chr7_4:49553015-49553034 None:intergenic 25.0%
! GAGAAAACATGATGATGATT+TGG - chr7_4:49545732-49545751 None:intergenic 30.0%
!! GGGATTTTATCTTTTGATTC+TGG + chr7_4:49545874-49545893 Msa1159840:five_prime_UTR 30.0%
! TGATTCTGGAAATGGATAAT+TGG + chr7_4:49545888-49545907 Msa1159840:exon 30.0%
! TTCATTCTTCAGTTTTTGCA+TGG + chr7_4:49545995-49546014 Msa1159840:intron 30.0%
TTGTTGCATAGTTGAAAAAG+TGG + chr7_4:49546072-49546091 Msa1159840:intron 30.0%
TGTTGCATAGTTGAAAAAGT+GGG + chr7_4:49546073-49546092 Msa1159840:intron 30.0%
AAGTAAAGTGATCACAATCA+AGG - chr7_4:49546194-49546213 None:intergenic 30.0%
!! TACTTTTGAATTGGTTCAGT+TGG + chr7_4:49546209-49546228 Msa1159840:intron 30.0%
!! ACTTTTGAATTGGTTCAGTT+GGG + chr7_4:49546210-49546229 Msa1159840:intron 30.0%
! AAAATTGGGGTTTTTCCATA+AGG + chr7_4:49546247-49546266 Msa1159840:intron 30.0%
! AAATTGGGGTTTTTCCATAA+GGG + chr7_4:49546248-49546267 Msa1159840:intron 30.0%
TAGTTATCTATCAACCCTTA+TGG - chr7_4:49546265-49546284 None:intergenic 30.0%
TATTACAGAACATAATCAGC+AGG - chr7_4:49546310-49546329 None:intergenic 30.0%
AATAAACATCTCCTTGAACA+TGG - chr7_4:49546542-49546561 None:intergenic 30.0%
ATGTTCAAGGAGATGTTTAT+TGG + chr7_4:49546541-49546560 Msa1159840:intron 30.0%
TTCATTGAATAGCCAAATCT+AGG - chr7_4:49546711-49546730 None:intergenic 30.0%
CATGTGATTATAACATAACG+TGG - chr7_4:49546778-49546797 None:intergenic 30.0%
!!! TCTTTTGGTTCACAGATAAT+AGG + chr7_4:49546863-49546882 Msa1159840:intron 30.0%
ACAATGCAAAAAACAGGTAT+TGG + chr7_4:49547031-49547050 Msa1159840:CDS 30.0%
CAATGCAAAAAACAGGTATT+GGG + chr7_4:49547032-49547051 Msa1159840:CDS 30.0%
TCTATGTAAATGTTAGGATC+AGG - chr7_4:49547093-49547112 None:intergenic 30.0%
! TTCTGAACTTTATTTGGATG+TGG + chr7_4:49547140-49547159 Msa1159840:CDS 30.0%
! TCTCCTTTTTCTTCTATGTT+GGG - chr7_4:49547186-49547205 None:intergenic 30.0%
AAAGAATATGGATGGCAAAA+TGG + chr7_4:49547417-49547436 Msa1159840:CDS 30.0%
GACTTGTATAACAAGTATCA+AGG + chr7_4:49547486-49547505 Msa1159840:CDS 30.0%
AAGTATCAAGGAAGAAATAG+TGG + chr7_4:49547498-49547517 Msa1159840:CDS 30.0%
AGTATCAAGGAAGAAATAGT+GGG + chr7_4:49547499-49547518 Msa1159840:CDS 30.0%
AGAAAGAAAACAACATGTCT+TGG + chr7_4:49547559-49547578 Msa1159840:CDS 30.0%
AATGAGTATCAGATGAATAG+AGG + chr7_4:49547612-49547631 Msa1159840:CDS 30.0%
TAGTTTAAGAAATACCTGTG+TGG + chr7_4:49547906-49547925 Msa1159840:intron 30.0%
TTGAAGTTGTCATCATTTCA+TGG + chr7_4:49548138-49548157 Msa1159840:intron 30.0%
GTCATCATTTCATGGTTAAT+TGG + chr7_4:49548146-49548165 Msa1159840:intron 30.0%
TTACTCAAAAGTGAAGCTTT+GGG + chr7_4:49548169-49548188 Msa1159840:intron 30.0%
! AAAAACTTTTCAGTTGACAC+AGG + chr7_4:49548400-49548419 Msa1159840:intron 30.0%
! ATTATGTTCATTTTGTTGGC+AGG + chr7_4:49548515-49548534 Msa1159840:intron 30.0%
! GGTTGATACATTAACAAAAG+TGG + chr7_4:49548658-49548677 Msa1159840:three_prime_UTR 30.0%
GCACAGAAATTTAACAATGT+TGG - chr7_4:49548758-49548777 None:intergenic 30.0%
TTGTCGTAAGTTTCAAAAGT+AGG + chr7_4:49548779-49548798 Msa1159840:intron 30.0%
TGTCGTAAGTTTCAAAAGTA+GGG + chr7_4:49548780-49548799 Msa1159840:intron 30.0%
ATATTGGTACAATTAGACGT+CGG - chr7_4:49548875-49548894 None:intergenic 30.0%
!!! GATTTTTTGTTAGTGCTAAG+TGG + chr7_4:49549071-49549090 Msa1159840:intron 30.0%
ATAAGAAAGAGAGAAAAGAG+AGG + chr7_4:49549105-49549124 Msa1159840:intron 30.0%
! AATATGACAGTGTTGTTAAG+CGG - chr7_4:49549334-49549353 None:intergenic 30.0%
TGTGTTTGAGAAAATGTGAA+TGG - chr7_4:49549483-49549502 None:intergenic 30.0%
TAAGCTTGAATCATGACATT+TGG - chr7_4:49549594-49549613 None:intergenic 30.0%
TCATGATTCAAGCTTAGTAA+TGG + chr7_4:49549598-49549617 Msa1159840:intron 30.0%
ATTGAAGGATTGGAAATATG+AGG - chr7_4:49549700-49549719 None:intergenic 30.0%
! AATTTTGTCTCCAAATCCAT+GGG + chr7_4:49549717-49549736 Msa1159840:intron 30.0%
!! TGCTAGGAATCATGTTTTAA+TGG + chr7_4:49549744-49549763 Msa1159840:intron 30.0%
! GCAATTTTTCCCAAAAATGA+GGG - chr7_4:49549848-49549867 None:intergenic 30.0%
! AGCAATTTTTCCCAAAAATG+AGG - chr7_4:49549849-49549868 None:intergenic 30.0%
!!! GATTTTGAAACATTCTCACA+AGG - chr7_4:49549872-49549891 None:intergenic 30.0%
TCTAGTGAGTATATGTGTTA+TGG + chr7_4:49549897-49549916 Msa1159840:intron 30.0%
CTAGTGAGTATATGTGTTAT+GGG + chr7_4:49549898-49549917 Msa1159840:intron 30.0%
ATGTTATAGGAACTATTGGA+AGG + chr7_4:49549945-49549964 Msa1159840:intron 30.0%
AGGAAAGGTTTACTAACTAA+AGG - chr7_4:49550051-49550070 None:intergenic 30.0%
! AGTTAGTAAACCTTTCCTTT+TGG + chr7_4:49550053-49550072 Msa1159840:intron 30.0%
! GTTAGTAAACCTTTCCTTTT+GGG + chr7_4:49550054-49550073 Msa1159840:intron 30.0%
! GGTTAGTGCTAATATGTTTT+AGG + chr7_4:49550130-49550149 Msa1159840:intron 30.0%
CTTCTATACTAACATAAGCA+TGG - chr7_4:49550204-49550223 None:intergenic 30.0%
GCTTATGTTAGTATAGAAGT+TGG + chr7_4:49550205-49550224 Msa1159840:intron 30.0%
TATGTTAGTATAGAAGTTGG+AGG + chr7_4:49550208-49550227 Msa1159840:intron 30.0%
GAAGTTGGAGGAAAATTATT+AGG + chr7_4:49550220-49550239 Msa1159840:intron 30.0%
ATTTGGTATGTTCCTATCTT+TGG + chr7_4:49550318-49550337 Msa1159840:intron 30.0%
TTAAATGAATACACGACCAA+TGG + chr7_4:49550361-49550380 Msa1159840:intron 30.0%
CATAGCAATATGGTAGTATT+TGG - chr7_4:49550452-49550471 None:intergenic 30.0%
!!! ATTTTAGAGTACACTAGCAA+GGG - chr7_4:49550582-49550601 None:intergenic 30.0%
!!! TATTTTAGAGTACACTAGCA+AGG - chr7_4:49550583-49550602 None:intergenic 30.0%
TGGAAATATTACCGGTAATT+AGG + chr7_4:49551182-49551201 Msa1159840:intron 30.0%
GGAAATATTACCGGTAATTA+GGG + chr7_4:49551183-49551202 Msa1159840:intron 30.0%
GAAATATTACCGGTAATTAG+GGG + chr7_4:49551184-49551203 Msa1159840:intron 30.0%
GAATTTATTCCCCTAATTAC+CGG - chr7_4:49551196-49551215 None:intergenic 30.0%
GTAATTAGGGGAATAAATTC+CGG + chr7_4:49551196-49551215 Msa1159840:intron 30.0%
TAATTAGGGGAATAAATTCC+GGG + chr7_4:49551197-49551216 Msa1159840:intron 30.0%
! ATTTTACGAATAAACTCAGG+TGG - chr7_4:49551229-49551248 None:intergenic 30.0%
! CTTTTCTTAATCTTTCCTCT+TGG - chr7_4:49551490-49551509 None:intergenic 30.0%
CAAGAGGAAAGATTAAGAAA+AGG + chr7_4:49551488-49551507 Msa1159840:three_prime_UTR 30.0%
TATATGTGGAAATATGTCTC+AGG + chr7_4:49551546-49551565 Msa1159840:three_prime_UTR 30.0%
AAGTTACTAGATAATCAGAC+AGG + chr7_4:49551679-49551698 Msa1159840:three_prime_UTR 30.0%
TGTACATTAATAGTCTTCAC+AGG + chr7_4:49551717-49551736 Msa1159840:three_prime_UTR 30.0%
GAATTGATCAAGTTCACAAT+TGG - chr7_4:49551889-49551908 None:intergenic 30.0%
AAATGATGACTCAATCAGTA+TGG + chr7_4:49551940-49551959 Msa1159840:three_prime_UTR 30.0%
!! AGATTTAGTCCAAAAGCATT+TGG + chr7_4:49552111-49552130 Msa1159840:three_prime_UTR 30.0%
!! GATTTAGTCCAAAAGCATTT+GGG + chr7_4:49552112-49552131 Msa1159840:three_prime_UTR 30.0%
!! ATTTAGTCCAAAAGCATTTG+GGG + chr7_4:49552113-49552132 Msa1159840:three_prime_UTR 30.0%
TCGTTTGTGACTTTCAAAAA+TGG + chr7_4:49552197-49552216 Msa1159840:three_prime_UTR 30.0%
GGTAAAAAATATACTAGCAC+TGG + chr7_4:49552474-49552493 Msa1159840:three_prime_UTR 30.0%
GAGGAAACTAACTTTATTGA+AGG + chr7_4:49552609-49552628 Msa1159840:three_prime_UTR 30.0%
GGAAACTAACTTTATTGAAG+GGG + chr7_4:49552611-49552630 Msa1159840:three_prime_UTR 30.0%
!! AGAGATTTTGTGACTAGTTA+TGG + chr7_4:49552683-49552702 Msa1159840:three_prime_UTR 30.0%
TTGAGAATATGATTGCAGTT+AGG - chr7_4:49552787-49552806 None:intergenic 30.0%
TAACTGCAATCATATTCTCA+AGG + chr7_4:49552786-49552805 Msa1159840:three_prime_UTR 30.0%
ATAGATAAGCAGGTTTCAAA+TGG - chr7_4:49552890-49552909 None:intergenic 30.0%
AAACCTGCTTATCTATTTGT+AGG + chr7_4:49552894-49552913 Msa1159840:three_prime_UTR 30.0%
TTTCCTACAAATAGATAAGC+AGG - chr7_4:49552900-49552919 None:intergenic 30.0%
TGTGTTCATTAGTCAAAGAA+AGG + chr7_4:49552928-49552947 Msa1159840:three_prime_UTR 30.0%
!!! CGGATTTTAGAACAAGGTTA+TGG - chr7_4:49545760-49545779 None:intergenic 35.0%
AAAAAGGGATAACACAGACA+CGG - chr7_4:49545780-49545799 None:intergenic 35.0%
! TTTTCCGTTATAGGATGAGA+AGG - chr7_4:49545960-49545979 None:intergenic 35.0%
! TAAAGGTGGTTTTCCGTTAT+AGG - chr7_4:49545969-49545988 None:intergenic 35.0%
! TATAACGGAAAACCACCTTT+AGG + chr7_4:49545968-49545987 Msa1159840:CDS 35.0%
TGAAGAATGAACGAACCTAA+AGG - chr7_4:49545986-49546005 None:intergenic 35.0%
AAGTGGGTGAATGTTAGAAT+TGG + chr7_4:49546089-49546108 Msa1159840:intron 35.0%
!! CTTTTGAATTGGTTCAGTTG+GGG + chr7_4:49546211-49546230 Msa1159840:intron 35.0%
AACTATGTTTCAGTTTGCGT+TGG + chr7_4:49546280-49546299 Msa1159840:intron 35.0%
AGAATGTAGTTGAAGTAAGC+AGG - chr7_4:49546647-49546666 None:intergenic 35.0%
TGATTATAACATAACGTGGC+TGG - chr7_4:49546774-49546793 None:intergenic 35.0%
GAAAGCTAATAGAAGACAAG+AGG + chr7_4:49546947-49546966 Msa1159840:CDS 35.0%
CATTCGACAATGCAAAAAAC+AGG + chr7_4:49547025-49547044 Msa1159840:CDS 35.0%
TAAATGTTAGGATCAGGCAA+TGG - chr7_4:49547087-49547106 None:intergenic 35.0%
! CTCCTTTTTCTTCTATGTTG+GGG - chr7_4:49547185-49547204 None:intergenic 35.0%
! CTCTCCTTTTTCTTCTATGT+TGG - chr7_4:49547187-49547206 None:intergenic 35.0%
CAACATAGAAGAAAAAGGAG+AGG + chr7_4:49547185-49547204 Msa1159840:CDS 35.0%
! TTCTTTTGCAGCATGTTCAA+CGG - chr7_4:49547403-49547422 None:intergenic 35.0%
GAACATGCTGCAAAAGAATA+TGG + chr7_4:49547405-49547424 Msa1159840:CDS 35.0%
ATGCTGCAAAAGAATATGGA+TGG + chr7_4:49547409-49547428 Msa1159840:CDS 35.0%
AAATGGTCAGAATGATTCTC+AGG + chr7_4:49547434-49547453 Msa1159840:CDS 35.0%
AATGGTCAGAATGATTCTCA+GGG + chr7_4:49547435-49547454 Msa1159840:CDS 35.0%
! AAATAGTGGGAGAGGAAATT+GGG + chr7_4:49547512-49547531 Msa1159840:CDS 35.0%
AAGAACCATGGATATCATCA+TGG + chr7_4:49547585-49547604 Msa1159840:CDS 35.0%
AATAGAGGAGGAAGAAGAAA+TGG + chr7_4:49547627-49547646 Msa1159840:CDS 35.0%
! GAGGGGAAAATTTGCTTATA+AGG + chr7_4:49547674-49547693 Msa1159840:CDS 35.0%
ATCTTCATTTACCATGCACT+AGG - chr7_4:49547708-49547727 None:intergenic 35.0%
TAAATGAAGATCGAATGCTG+TGG + chr7_4:49547717-49547736 Msa1159840:exon 35.0%
ATATTGTTGCATTCACCTGA+AGG + chr7_4:49547861-49547880 Msa1159840:intron 35.0%
GTACTAATGCATTGGATCAT+CGG - chr7_4:49547935-49547954 None:intergenic 35.0%
GGGTATAAATGTATGCACAA+AGG - chr7_4:49548040-49548059 None:intergenic 35.0%
GTTACTCAAAAGTGAAGCTT+TGG + chr7_4:49548168-49548187 Msa1159840:intron 35.0%
CAAGAAATACTTGCGAAGTA+TGG + chr7_4:49548234-49548253 Msa1159840:intron 35.0%
GCGAAGTATGGAAAATGAAA+CGG + chr7_4:49548246-49548265 Msa1159840:intron 35.0%
AAGTATGGAAAATGAAACGG+AGG + chr7_4:49548249-49548268 Msa1159840:intron 35.0%
! GTTGTAAGCTTTTCCTCATT+TGG + chr7_4:49548274-49548293 Msa1159840:intron 35.0%
AAAGCAGCTAAATGCAGTTT+GGG - chr7_4:49548318-49548337 None:intergenic 35.0%
AAAAGCAGCTAAATGCAGTT+TGG - chr7_4:49548319-49548338 None:intergenic 35.0%
ACACATTCTCCAACAGAAAT+GGG - chr7_4:49548462-49548481 None:intergenic 35.0%
AACACATTCTCCAACAGAAA+TGG - chr7_4:49548463-49548482 None:intergenic 35.0%
! AATCATGATTTGAGATGAGC+GGG - chr7_4:49548616-49548635 None:intergenic 35.0%
! CAATCATGATTTGAGATGAG+CGG - chr7_4:49548617-49548636 None:intergenic 35.0%
TCATGATTGTGCTGAACATT+TGG + chr7_4:49548628-49548647 Msa1159840:three_prime_UTR 35.0%
TATTGAGGATGTAAACGACT+AGG - chr7_4:49548725-49548744 None:intergenic 35.0%
!!! GTTGGTTTTGCTAACTATTG+AGG - chr7_4:49548740-49548759 None:intergenic 35.0%
GATGTGATGACATATTTCCA+AGG + chr7_4:49548993-49549012 Msa1159840:intron 35.0%
GTTAGAGTTTGGTTAGTAGT+TGG - chr7_4:49549302-49549321 None:intergenic 35.0%
GGGATATTACAGTTAGAGTT+TGG - chr7_4:49549313-49549332 None:intergenic 35.0%
! ATATGACAGTGTTGTTAAGC+GGG - chr7_4:49549333-49549352 None:intergenic 35.0%
ATATTGAACCAAGGGCAAAA+AGG + chr7_4:49549400-49549419 Msa1159840:intron 35.0%
AGAAAATGTGAATGGAAGTG+TGG - chr7_4:49549475-49549494 None:intergenic 35.0%
TCCTTCTCTAAACTAACCAT+CGG + chr7_4:49549510-49549529 Msa1159840:intron 35.0%
!! TTGGAGTGATTTTGAGAGAT+TGG - chr7_4:49549575-49549594 None:intergenic 35.0%
ATTGGAAATATGAGGAAAGG+GGG - chr7_4:49549692-49549711 None:intergenic 35.0%
GATTGGAAATATGAGGAAAG+GGG - chr7_4:49549693-49549712 None:intergenic 35.0%
GGATTGGAAATATGAGGAAA+GGG - chr7_4:49549694-49549713 None:intergenic 35.0%
AGGATTGGAAATATGAGGAA+AGG - chr7_4:49549695-49549714 None:intergenic 35.0%
TGGAGACAAAATTGAAGGAT+TGG - chr7_4:49549710-49549729 None:intergenic 35.0%
GGATTTGGAGACAAAATTGA+AGG - chr7_4:49549715-49549734 None:intergenic 35.0%
! CAATTTTGTCTCCAAATCCA+TGG + chr7_4:49549716-49549735 Msa1159840:intron 35.0%
!!! CATGTTTTAATGGATACCCA+TGG + chr7_4:49549754-49549773 Msa1159840:intron 35.0%
TTCCCAAAAATGAGGGTTTA+GGG - chr7_4:49549841-49549860 None:intergenic 35.0%
TTTCCCAAAAATGAGGGTTT+AGG - chr7_4:49549842-49549861 None:intergenic 35.0%
TAAAGGAACTCACAATCTTG+TGG - chr7_4:49550034-49550053 None:intergenic 35.0%
!!! TGATTTTGAGCTTTAGGACA+TGG + chr7_4:49550109-49550128 Msa1159840:intron 35.0%
TGGAGGAAAATTATTAGGCA+AGG + chr7_4:49550225-49550244 Msa1159840:intron 35.0%
ATGTTCCTATCTTTGGCTAA+CGG + chr7_4:49550325-49550344 Msa1159840:intron 35.0%
! ACAATTTTCGGCTACATATC+CGG - chr7_4:49550414-49550433 None:intergenic 35.0%
ATATGGTAGTATTTGGTTGG+AGG - chr7_4:49550445-49550464 None:intergenic 35.0%
GCAATATGGTAGTATTTGGT+TGG - chr7_4:49550448-49550467 None:intergenic 35.0%
! GCAAATATCGGCTAAAATTC+CGG + chr7_4:49550690-49550709 Msa1159840:intron 35.0%
! TTATGGTAGTTTGCGATTAG+AGG - chr7_4:49550852-49550871 None:intergenic 35.0%
TTAGCCAAGAATATCAGTCA+TGG + chr7_4:49550908-49550927 Msa1159840:intron 35.0%
TAGCCAAGAATATCAGTCAT+GGG + chr7_4:49550909-49550928 Msa1159840:intron 35.0%
! TCTAAAATGGTAGTTTACCC+GGG - chr7_4:49550946-49550965 None:intergenic 35.0%
!! CTCTAAAATGGTAGTTTACC+CGG - chr7_4:49550947-49550966 None:intergenic 35.0%
TTACCGGTAATATTTCCAAC+TGG - chr7_4:49551180-49551199 None:intergenic 35.0%
AATTAGGGGAATAAATTCCG+GGG + chr7_4:49551198-49551217 Msa1159840:intron 35.0%
ACGATGTATAAACCTCAAAG+AGG + chr7_4:49551343-49551362 Msa1159840:intron 35.0%
GTCTAAATTCAACCTCTTTG+AGG - chr7_4:49551358-49551377 None:intergenic 35.0%
AAGAGGTTGAATTTAGACAG+AGG + chr7_4:49551360-49551379 Msa1159840:intron 35.0%
AGAGGTTGAATTTAGACAGA+GGG + chr7_4:49551361-49551380 Msa1159840:intron 35.0%
!! TCATTGGTGATGTCTATATG+TGG + chr7_4:49551532-49551551 Msa1159840:three_prime_UTR 35.0%
!! TTTAGTCCAAAAGCATTTGG+GGG + chr7_4:49552114-49552133 Msa1159840:three_prime_UTR 35.0%
GGTGATCAAAACTGAAGATA+AGG + chr7_4:49552218-49552237 Msa1159840:three_prime_UTR 35.0%
TTGAAATACCATCAGGTTTC+AGG + chr7_4:49552253-49552272 Msa1159840:intron 35.0%
TGAAATACCATCAGGTTTCA+GGG + chr7_4:49552254-49552273 Msa1159840:intron 35.0%
GGGAAAGAAAAGGAGAAATT+GGG - chr7_4:49552370-49552389 None:intergenic 35.0%
TGGGAAAGAAAAGGAGAAAT+TGG - chr7_4:49552371-49552390 None:intergenic 35.0%
!! ATTGGTCTTTGGGAAAGAAA+AGG - chr7_4:49552380-49552399 None:intergenic 35.0%
! TTTTCTTCTCTCTTGACATC+TGG + chr7_4:49552413-49552432 Msa1159840:intron 35.0%
! TTCCAAACTTGATACCGATT+TGG - chr7_4:49552524-49552543 None:intergenic 35.0%
AAATCGGTATCAAGTTTGGA+AGG + chr7_4:49552523-49552542 Msa1159840:three_prime_UTR 35.0%
! TCAAGTTTGGAAGGTGATTT+TGG + chr7_4:49552532-49552551 Msa1159840:three_prime_UTR 35.0%
! CAAGTTTGGAAGGTGATTTT+GGG + chr7_4:49552533-49552552 Msa1159840:three_prime_UTR 35.0%
TGGACTCGTTATTAAAGATG+AGG + chr7_4:49552590-49552609 Msa1159840:three_prime_UTR 35.0%
! AGAAGCAGCTGAACTATTTT+TGG + chr7_4:49552650-49552669 Msa1159840:three_prime_UTR 35.0%
! TTACACTGCAGTCTTGTAAT+TGG - chr7_4:49552956-49552975 None:intergenic 35.0%
!!! CAGACACGGATTTTAGAACA+AGG - chr7_4:49545766-49545785 None:intergenic 40.0%
CTCAGTAACCATCATCAAGT+GGG + chr7_4:49545920-49545939 Msa1159840:CDS 40.0%
TCCTCCTTCTCATCCTATAA+CGG + chr7_4:49545953-49545972 Msa1159840:CDS 40.0%
AGAATGAACGAACCTAAAGG+TGG - chr7_4:49545983-49546002 None:intergenic 40.0%
GAATAATTGCTGTCACATGC+AGG + chr7_4:49546132-49546151 Msa1159840:intron 40.0%
!!! TTGGTTCAGTTGGGGTTTTT+TGG + chr7_4:49546219-49546238 Msa1159840:intron 40.0%
! TGTCGTGCTTTGAATTCATG+CGG + chr7_4:49546341-49546360 Msa1159840:intron 40.0%
!! CTTGATTTTGGCCATGTTCA+AGG + chr7_4:49546528-49546547 Msa1159840:intron 40.0%
CGACAAACATCATCATCATC+AGG - chr7_4:49546583-49546602 None:intergenic 40.0%
AAACTGAAGCTGCCTAGATT+TGG + chr7_4:49546696-49546715 Msa1159840:intron 40.0%
!! CAAAACTGCTTTTCCCACAA+AGG - chr7_4:49546901-49546920 None:intergenic 40.0%
!! GGAAAAGCAGTTTTGTGCTT+CGG + chr7_4:49546906-49546925 Msa1159840:CDS 40.0%
!! TCTTCTATTAGCTTTCGCCA+TGG - chr7_4:49546943-49546962 None:intergenic 40.0%
CATGTATATGCATCCCAAAG+TGG + chr7_4:49546972-49546991 Msa1159840:CDS 40.0%
TGAGATCAACAACATTCCCT+GGG + chr7_4:49547056-49547075 Msa1159840:CDS 40.0%
! TTTTTCTTCTATGTTGGGGC+GGG - chr7_4:49547181-49547200 None:intergenic 40.0%
! CTTTTTCTTCTATGTTGGGG+CGG - chr7_4:49547182-49547201 None:intergenic 40.0%
CATAGAAGAAAAAGGAGAGG+CGG + chr7_4:49547188-49547207 Msa1159840:CDS 40.0%
! GCAGCATAATTTGGTTCAGA+AGG - chr7_4:49547315-49547334 None:intergenic 40.0%
TGAACCAAATTATGCTGCTC+TGG + chr7_4:49547317-49547336 Msa1159840:CDS 40.0%
GAACCAAATTATGCTGCTCT+GGG + chr7_4:49547318-49547337 Msa1159840:CDS 40.0%
!! AAATTATGCTGCTCTGGGAT+GGG + chr7_4:49547323-49547342 Msa1159840:CDS 40.0%
! TCTTTTGCAGCATGTTCAAC+GGG - chr7_4:49547402-49547421 None:intergenic 40.0%
! GAAATAGTGGGAGAGGAAAT+TGG + chr7_4:49547511-49547530 Msa1159840:CDS 40.0%
! AATAGTGGGAGAGGAAATTG+GGG + chr7_4:49547513-49547532 Msa1159840:CDS 40.0%
ATGTCTTGGTCTAAGAACCA+TGG + chr7_4:49547573-49547592 Msa1159840:CDS 40.0%
TAGTGCCATGATGATATCCA+TGG - chr7_4:49547593-49547612 None:intergenic 40.0%
GAGTATCAGATGAATAGAGG+AGG + chr7_4:49547615-49547634 Msa1159840:CDS 40.0%
AAACCTATGAAGCTGCTAGA+GGG + chr7_4:49547753-49547772 Msa1159840:three_prime_UTR 40.0%
!! AGGGTCAGTTTTGTGAAAGT+TGG + chr7_4:49547772-49547791 Msa1159840:three_prime_UTR 40.0%
!! TCAGTTTTGTGAAAGTTGGC+AGG + chr7_4:49547776-49547795 Msa1159840:three_prime_UTR 40.0%
CAAAAGACCATATAGCCTTC+AGG - chr7_4:49547879-49547898 None:intergenic 40.0%
! CTGAAGGCTATATGGTCTTT+TGG + chr7_4:49547877-49547896 Msa1159840:intron 40.0%
!! TGAAGCTTTGGGAAAGAACT+AGG + chr7_4:49548180-49548199 Msa1159840:intron 40.0%
GGAAAGAACTAGGCATTAAG+AGG + chr7_4:49548190-49548209 Msa1159840:intron 40.0%
! TCACACTCTAGTTCCAAATG+AGG - chr7_4:49548290-49548309 None:intergenic 40.0%
AACCTTTACCCCATTTCTGT+TGG + chr7_4:49548450-49548469 Msa1159840:intron 40.0%
CACATTCTCCAACAGAAATG+GGG - chr7_4:49548461-49548480 None:intergenic 40.0%
TCTAATGCACTCTCTACATC+AGG - chr7_4:49548554-49548573 None:intergenic 40.0%
TGCATTAGACCTTTCACTTG+TGG + chr7_4:49548565-49548584 Msa1159840:three_prime_UTR 40.0%
CTTTCACTTGTGGAGTCAAT+GGG + chr7_4:49548575-49548594 Msa1159840:three_prime_UTR 40.0%
!! ATTTGAGATGAGCGGGTTTT+TGG - chr7_4:49548609-49548628 None:intergenic 40.0%
! TGCTGAACATTTGGTGATCA+TGG + chr7_4:49548637-49548656 Msa1159840:three_prime_UTR 40.0%
GAGAAAAGAGAGGAATTGTG+AGG + chr7_4:49549115-49549134 Msa1159840:intron 40.0%
GAGAGGAATTGTGAGGTTAA+AGG + chr7_4:49549122-49549141 Msa1159840:intron 40.0%
! GTTAGTAGTTGGACTTGGTT+TGG - chr7_4:49549291-49549310 None:intergenic 40.0%
GTTTGGTTAGTAGTTGGACT+TGG - chr7_4:49549296-49549315 None:intergenic 40.0%
CTAGCAATTTCCCATGGATT+TGG - chr7_4:49549730-49549749 None:intergenic 40.0%
CAAATCCATGGGAAATTGCT+AGG + chr7_4:49549728-49549747 Msa1159840:intron 40.0%
TGATTCCTAGCAATTTCCCA+TGG - chr7_4:49549736-49549755 None:intergenic 40.0%
!! GTTTTAATGGATACCCATGG+TGG + chr7_4:49549757-49549776 Msa1159840:intron 40.0%
TCCCAAAAATGAGGGTTTAG+GGG - chr7_4:49549840-49549859 None:intergenic 40.0%
TAGGAACTATTGGAAGGAGA+AGG + chr7_4:49549951-49549970 Msa1159840:intron 40.0%
AAGGAGCTTAACTAGTGGTT+TGG + chr7_4:49549970-49549989 Msa1159840:three_prime_UTR 40.0%
ATTGGACTACCCAAAAGGAA+AGG - chr7_4:49550066-49550085 None:intergenic 40.0%
GCATAATTGGACTACCCAAA+AGG - chr7_4:49550071-49550090 None:intergenic 40.0%
TGTTCCTATCTTTGGCTAAC+GGG + chr7_4:49550326-49550345 Msa1159840:intron 40.0%
AATGAATACACGACCAATGG+CGG + chr7_4:49550364-49550383 Msa1159840:intron 40.0%
ACACATTTCGGCTACACATT+CGG - chr7_4:49550820-49550839 None:intergenic 40.0%
CTACCCATGACTGATATTCT+TGG - chr7_4:49550915-49550934 None:intergenic 40.0%
CAAGAATATCAGTCATGGGT+AGG + chr7_4:49550913-49550932 Msa1159840:intron 40.0%
! GGAACCTTTTGTATCCTAAC+TGG - chr7_4:49551075-49551094 None:intergenic 40.0%
TTTAGACAGAGGGCAATCAT+AGG + chr7_4:49551371-49551390 Msa1159840:intron 40.0%
TTCGGAGTTGCTATGAATCA+AGG + chr7_4:49551906-49551925 Msa1159840:three_prime_UTR 40.0%
TTTATGGAAGAAGTCACACG+TGG + chr7_4:49552144-49552163 Msa1159840:three_prime_UTR 40.0%
TCAAAACTGAAGATAAGGCG+AGG + chr7_4:49552223-49552242 Msa1159840:three_prime_UTR 40.0%
!! CTTTCAGGTTGAGGGTATTA+TGG + chr7_4:49552438-49552457 Msa1159840:intron 40.0%
TATTATGGTCTGTGTGCAAG+TGG + chr7_4:49552453-49552472 Msa1159840:three_prime_UTR 40.0%
AGCAATGGAAAAGACTGAAC+TGG + chr7_4:49552498-49552517 Msa1159840:three_prime_UTR 40.0%
AAAGACTGAACTGGCCAAAT+CGG + chr7_4:49552507-49552526 Msa1159840:three_prime_UTR 40.0%
!! AAGGTGATTTTGGGTAGAAC+CGG + chr7_4:49552542-49552561 Msa1159840:three_prime_UTR 40.0%
!! GTTGATTTGGCTTGTGAACA+TGG + chr7_4:49552570-49552589 Msa1159840:three_prime_UTR 40.0%
! TTGTGGACGGGAATGTTTTA+AGG - chr7_4:49552744-49552763 None:intergenic 40.0%
! CAGTTTGCTCATCTACAGAA+TGG - chr7_4:49552818-49552837 None:intergenic 40.0%
GCAAACTGCATTGAAGTTAC+TGG + chr7_4:49552830-49552849 Msa1159840:three_prime_UTR 40.0%
!! CCACTTGATGATGGTTACTG+AGG - chr7_4:49545922-49545941 None:intergenic 45.0%
CCTCAGTAACCATCATCAAG+TGG + chr7_4:49545919-49545938 Msa1159840:CDS 45.0%
TCCGTTATAGGATGAGAAGG+AGG - chr7_4:49545957-49545976 None:intergenic 45.0%
! TGCTTTGAATTCATGCGGTG+CGG + chr7_4:49546346-49546365 Msa1159840:intron 45.0%
GTTTCCAACAGTGCCTTTGT+GGG + chr7_4:49546885-49546904 Msa1159840:CDS 45.0%
!!! TTTTCCCACAAAGGCACTGT+TGG - chr7_4:49546892-49546911 None:intergenic 45.0%
!! AAAGCAGTTTTGTGCTTCGG+TGG + chr7_4:49546909-49546928 Msa1159840:CDS 45.0%
!! AAGCAGTTTTGTGCTTCGGT+GGG + chr7_4:49546910-49546929 Msa1159840:CDS 45.0%
TGCATCCCAAAGTGGTAAAC+TGG + chr7_4:49546980-49546999 Msa1159840:CDS 45.0%
GCATCCCAAAGTGGTAAACT+GGG + chr7_4:49546981-49547000 Msa1159840:CDS 45.0%
TCGTCCCAGTTTACCACTTT+GGG - chr7_4:49546988-49547007 None:intergenic 45.0%
CTGAGATCAACAACATTCCC+TGG + chr7_4:49547055-49547074 Msa1159840:CDS 45.0%
GGATGTGGAAATAGAAGCAG+AGG + chr7_4:49547155-49547174 Msa1159840:CDS 45.0%
CGCCCCAACATAGAAGAAAA+AGG + chr7_4:49547180-49547199 Msa1159840:CDS 45.0%
! CAGAAGAGGACTGATTCAAG+AGG - chr7_4:49547236-49547255 None:intergenic 45.0%
CTCTTGAATCAGTCCTCTTC+TGG + chr7_4:49547234-49547253 Msa1159840:CDS 45.0%
AATCAGTCCTCTTCTGGTCT+TGG + chr7_4:49547240-49547259 Msa1159840:CDS 45.0%
!! TCCTCTTCTGGTCTTGGATT+GGG + chr7_4:49547246-49547265 Msa1159840:CDS 45.0%
CATCCCAGAGCAGCATAATT+TGG - chr7_4:49547324-49547343 None:intergenic 45.0%
!! CAAATTATGCTGCTCTGGGA+TGG + chr7_4:49547322-49547341 Msa1159840:CDS 45.0%
GTCAGAATGATTCTCAGGGA+TGG + chr7_4:49547439-49547458 Msa1159840:CDS 45.0%
ATTCTCAGGGATGGAATCAG+AGG + chr7_4:49547448-49547467 Msa1159840:CDS 45.0%
TTCTCAGGGATGGAATCAGA+GGG + chr7_4:49547449-49547468 Msa1159840:CDS 45.0%
! CAAGGAAGAAATAGTGGGAG+AGG + chr7_4:49547504-49547523 Msa1159840:CDS 45.0%
GAGAGGAAATTGGGGAACAT+GGG + chr7_4:49547521-49547540 Msa1159840:CDS 45.0%
AGAGGAGGAAGAAGAAATGG+AGG + chr7_4:49547630-49547649 Msa1159840:CDS 45.0%
GGAAGAAGAAATGGAGGAAG+AGG + chr7_4:49547636-49547655 Msa1159840:CDS 45.0%
AGAAGAAATGGAGGAAGAGG+AGG + chr7_4:49547639-49547658 Msa1159840:CDS 45.0%
GAAACCTATGAAGCTGCTAG+AGG + chr7_4:49547752-49547771 Msa1159840:three_prime_UTR 45.0%
GCATTCACCTGAAGGCTATA+TGG + chr7_4:49547869-49547888 Msa1159840:intron 45.0%
CTCCAACAGAAATGGGGTAA+AGG - chr7_4:49548455-49548474 None:intergenic 45.0%
!! CCATTGACTCCACAAGTGAA+AGG - chr7_4:49548577-49548596 None:intergenic 45.0%
CCTTTCACTTGTGGAGTCAA+TGG + chr7_4:49548574-49548593 Msa1159840:three_prime_UTR 45.0%
CAAAAGTGGATCTGTAGACG+TGG + chr7_4:49548672-49548691 Msa1159840:three_prime_UTR 45.0%
! GCAATTGTCCTTTTTGCCCT+TGG - chr7_4:49549411-49549430 None:intergenic 45.0%
!! GCCGATGGTTAGTTTAGAGA+AGG - chr7_4:49549514-49549533 None:intergenic 45.0%
TAGTAGAAAGAGAGAGCCGA+TGG - chr7_4:49549529-49549548 None:intergenic 45.0%
CTAGCTTCAAATGAGAGGGA+AGG - chr7_4:49549666-49549685 None:intergenic 45.0%
CCACTTGCTTATTCCACCAT+GGG - chr7_4:49549773-49549792 None:intergenic 45.0%
ACCACTTGCTTATTCCACCA+TGG - chr7_4:49549774-49549793 None:intergenic 45.0%
CTTCCCTTTCCTACTCCTTA+TGG + chr7_4:49549808-49549827 Msa1159840:intron 45.0%
CCTCCATAAGGAGTAGGAAA+GGG - chr7_4:49549814-49549833 None:intergenic 45.0%
! TGCCCCTAAACCCTCATTTT+TGG + chr7_4:49549835-49549854 Msa1159840:intron 45.0%
!! GCCCCTAAACCCTCATTTTT+GGG + chr7_4:49549836-49549855 Msa1159840:intron 45.0%
AGGAGAAGGAGCTTAACTAG+TGG + chr7_4:49549965-49549984 Msa1159840:three_prime_UTR 45.0%
! TGTGCCACAAAGTGTTCTAG+AGG + chr7_4:49550003-49550022 Msa1159840:three_prime_UTR 45.0%
!! GGTTCCTCTAGAACACTTTG+TGG - chr7_4:49550010-49550029 None:intergenic 45.0%
AGGAACTCACAATCTTGTGG+AGG - chr7_4:49550031-49550050 None:intergenic 45.0%
GTATGGTTTCGGCTAGATTC+CGG + chr7_4:49550275-49550294 Msa1159840:intron 45.0%
TTCGGCTAGATTCCGGAAAT+TGG + chr7_4:49550282-49550301 Msa1159840:intron 45.0%
CATTCCCGTTAGCCAAAGAT+AGG - chr7_4:49550333-49550352 None:intergenic 45.0%
CACATTTCGGCTACACATTC+GGG - chr7_4:49550819-49550838 None:intergenic 45.0%
!! TTTTGCTATCCTCGCCAGTT+AGG + chr7_4:49551058-49551077 Msa1159840:intron 45.0%
! CTTTTGTATCCTAACTGGCG+AGG - chr7_4:49551070-49551089 None:intergenic 45.0%
CTCGCCAGTTAGGATACAAA+AGG + chr7_4:49551068-49551087 Msa1159840:intron 45.0%
TACAAAAGGTTCCCGTCAGT+TGG + chr7_4:49551082-49551101 Msa1159840:intron 45.0%
TTATTGTGGGGTCATCCTCA+CGG - chr7_4:49551120-49551139 None:intergenic 45.0%
GATGACCCCACAATAATCAG+AGG + chr7_4:49551124-49551143 Msa1159840:intron 45.0%
GGACTCCTCTGATTATTGTG+GGG - chr7_4:49551132-49551151 None:intergenic 45.0%
CGGACTCCTCTGATTATTGT+GGG - chr7_4:49551133-49551152 None:intergenic 45.0%
CCACAATAATCAGAGGAGTC+CGG + chr7_4:49551131-49551150 Msa1159840:intron 45.0%
CGGTAATATTTCCAACTGGC+GGG - chr7_4:49551176-49551195 None:intergenic 45.0%
CCGGTAATATTTCCAACTGG+CGG - chr7_4:49551177-49551196 None:intergenic 45.0%
CCGCCAGTTGGAAATATTAC+CGG + chr7_4:49551174-49551193 Msa1159840:intron 45.0%
TATCCCTGCAGGAAATCCTT+GGG - chr7_4:49551401-49551420 None:intergenic 45.0%
TCTTTCCTCTTGGATGACTG+TGG - chr7_4:49551480-49551499 None:intergenic 45.0%
GGGCGTTACACTAACTAACA+TGG + chr7_4:49551814-49551833 Msa1159840:three_prime_UTR 45.0%
CAATACTGTCTCACGTACAC+AGG + chr7_4:49552086-49552105 Msa1159840:three_prime_UTR 45.0%
ATTTGGGGGACGTGGATTTA+TGG + chr7_4:49552128-49552147 Msa1159840:three_prime_UTR 45.0%
GTTATAGCCCTGAAACCTGA+TGG - chr7_4:49552264-49552283 None:intergenic 45.0%
TCTTGACATCTGGTGCTTTC+AGG + chr7_4:49552423-49552442 Msa1159840:intron 45.0%
!! ATCTGGTGCTTTCAGGTTGA+GGG + chr7_4:49552430-49552449 Msa1159840:intron 45.0%
!! TATACTAGCACTGGCAGCAA+TGG + chr7_4:49552483-49552502 Msa1159840:three_prime_UTR 45.0%
GGCCAAATCGGTATCAAGTT+TGG + chr7_4:49552519-49552538 Msa1159840:three_prime_UTR 45.0%
AGATCCTCCATGGACATTTG+TGG - chr7_4:49552761-49552780 None:intergenic 45.0%
AGTTAGGCTTAGATCCTCCA+TGG - chr7_4:49552771-49552790 None:intergenic 45.0%
ACCATCATCAAGTGGGTCAG+TGG + chr7_4:49545927-49545946 Msa1159840:CDS 50.0%
CCATCATCAAGTGGGTCAGT+GGG + chr7_4:49545928-49545947 Msa1159840:CDS 50.0%
CATCATCAAGTGGGTCAGTG+GGG + chr7_4:49545929-49545948 Msa1159840:CDS 50.0%
! TGCTGTCACATGCAGGTTGA+CGG + chr7_4:49546139-49546158 Msa1159840:intron 50.0%
GGTTTCCAACAGTGCCTTTG+TGG + chr7_4:49546884-49546903 Msa1159840:CDS 50.0%
GTCGTCCCAGTTTACCACTT+TGG - chr7_4:49546989-49547008 None:intergenic 50.0%
!! GTCCTCTTCTGGTCTTGGAT+TGG + chr7_4:49547245-49547264 Msa1159840:CDS 50.0%
TCCCAATCCAAGACCAGAAG+AGG - chr7_4:49547250-49547269 None:intergenic 50.0%
! TTGGATTGGGACCTACTGGA+TGG + chr7_4:49547259-49547278 Msa1159840:CDS 50.0%
! TGGATTGGGACCTACTGGAT+GGG + chr7_4:49547260-49547279 Msa1159840:CDS 50.0%
TGGAATCAGAGGGAGCGATA+TGG + chr7_4:49547459-49547478 Msa1159840:CDS 50.0%
AATCAGAGGGAGCGATATGG+TGG + chr7_4:49547462-49547481 Msa1159840:CDS 50.0%
GGAGAGGAAATTGGGGAACA+TGG + chr7_4:49547520-49547539 Msa1159840:CDS 50.0%
GGAAATTGGGGAACATGGGA+TGG + chr7_4:49547525-49547544 Msa1159840:CDS 50.0%
AGAAATGGAGGAAGAGGAGG+AGG + chr7_4:49547642-49547661 Msa1159840:CDS 50.0%
AGGTTGCTACTCCTAGTGCA+TGG + chr7_4:49547694-49547713 Msa1159840:CDS 50.0%
AATGCTGTGGAGTGCAAGCA+AGG + chr7_4:49547730-49547749 Msa1159840:three_prime_UTR 50.0%
TGACCCTCTAGCAGCTTCAT+AGG - chr7_4:49547759-49547778 None:intergenic 50.0%
TGGATCTGTAGACGTGGTTG+TGG + chr7_4:49548678-49548697 Msa1159840:three_prime_UTR 50.0%
!! GCGGCTAGCTTCAAATGAGA+GGG - chr7_4:49549670-49549689 None:intergenic 50.0%
GGAAATATGAGGAAAGGGGG+CGG - chr7_4:49549689-49549708 None:intergenic 50.0%
! CCCATGGTGGAATAAGCAAG+TGG + chr7_4:49549770-49549789 Msa1159840:intron 50.0%
CCCTTTCCTACTCCTTATGG+AGG + chr7_4:49549811-49549830 Msa1159840:intron 50.0%
GCCTCCATAAGGAGTAGGAA+AGG - chr7_4:49549815-49549834 None:intergenic 50.0%
TACACGACCAATGGCGGTTA+CGG + chr7_4:49550370-49550389 Msa1159840:intron 50.0%
GTTCAATCCGTAACCGCCAT+TGG - chr7_4:49550380-49550399 None:intergenic 50.0%
TCATGGGTAGGTCACTAACC+CGG + chr7_4:49550925-49550944 Msa1159840:intron 50.0%
AAGGTTCCCGTCAGTTGGAA+CGG + chr7_4:49551087-49551106 Msa1159840:intron 50.0%
ATAGTGCCCGTTCCAACTGA+CGG - chr7_4:49551097-49551116 None:intergenic 50.0%
CCGGACTCCTCTGATTATTG+TGG - chr7_4:49551134-49551153 None:intergenic 50.0%
AAACTCAGGTGGTGTAACCC+CGG - chr7_4:49551218-49551237 None:intergenic 50.0%
GGCAATCATAGGTATCCCCA+AGG + chr7_4:49551382-49551401 Msa1159840:intron 50.0%
TATCCCCAAGGATTTCCTGC+AGG + chr7_4:49551394-49551413 Msa1159840:intron 50.0%
ATCCCCAAGGATTTCCTGCA+GGG + chr7_4:49551395-49551414 Msa1159840:intron 50.0%
ATCCCTGCAGGAAATCCTTG+GGG - chr7_4:49551400-49551419 None:intergenic 50.0%
CTATCCCTGCAGGAAATCCT+TGG - chr7_4:49551402-49551421 None:intergenic 50.0%
CAAGGATTTCCTGCAGGGAT+AGG + chr7_4:49551400-49551419 Msa1159840:intron 50.0%
ATGGAAGAAGTCACACGTGG+TGG + chr7_4:49552147-49552166 Msa1159840:three_prime_UTR 50.0%
!! CATCTGGTGCTTTCAGGTTG+AGG + chr7_4:49552429-49552448 Msa1159840:intron 50.0%
!! GTGATTTTGGGTAGAACCGG+AGG + chr7_4:49552545-49552564 Msa1159840:three_prime_UTR 50.0%
! AGAACCGGAGGTCGTTGATT+TGG + chr7_4:49552557-49552576 Msa1159840:three_prime_UTR 50.0%
CAAGCCAAATCAACGACCTC+CGG - chr7_4:49552564-49552583 None:intergenic 50.0%
TTCCCGTCCACAAATGTCCA+TGG + chr7_4:49552751-49552770 Msa1159840:three_prime_UTR 50.0%
CTCCATGGACATTTGTGGAC+GGG - chr7_4:49552756-49552775 None:intergenic 50.0%
CCTCCATGGACATTTGTGGA+CGG - chr7_4:49552757-49552776 None:intergenic 50.0%
CCCACTGACCCACTTGATGA+TGG - chr7_4:49545931-49545950 None:intergenic 55.0%
GGACGACTCTGCTGTCAAAG+AGG + chr7_4:49547002-49547021 Msa1159840:CDS 55.0%
TCAGGCAATGGTGTGTCCCA+GGG - chr7_4:49547075-49547094 None:intergenic 55.0%
ATCAGGCAATGGTGTGTCCC+AGG - chr7_4:49547076-49547095 None:intergenic 55.0%
! GGTCTTGGATTGGGACCTAC+TGG + chr7_4:49547255-49547274 Msa1159840:CDS 55.0%
GGATTGGGACCTACTGGATG+GGG + chr7_4:49547261-49547280 Msa1159840:CDS 55.0%
GATTGGGACCTACTGGATGG+GGG + chr7_4:49547262-49547281 Msa1159840:CDS 55.0%
ATTGGGACCTACTGGATGGG+GGG + chr7_4:49547263-49547282 Msa1159840:CDS 55.0%
AATGGAGGAAGAGGAGGAGG+TGG + chr7_4:49547645-49547664 Msa1159840:CDS 55.0%
ATGGAGGAAGAGGAGGAGGT+GGG + chr7_4:49547646-49547665 Msa1159840:CDS 55.0%
TGGATCATCGGTCACCACAC+AGG - chr7_4:49547923-49547942 None:intergenic 55.0%
!! GGCGGCTAGCTTCAAATGAG+AGG - chr7_4:49549671-49549690 None:intergenic 55.0%
GTTTAGGGGCAGCCTCCATA+AGG - chr7_4:49549826-49549845 None:intergenic 55.0%
CATGGGTAGGTCACTAACCC+GGG + chr7_4:49550926-49550945 Msa1159840:intron 55.0%
AGGTTCCCGTCAGTTGGAAC+GGG + chr7_4:49551088-49551107 Msa1159840:intron 55.0%
TAGTGCCCGTTCCAACTGAC+GGG - chr7_4:49551096-49551115 None:intergenic 55.0%
AACCCAACTGACGGGGATAC+CGG - chr7_4:49551153-49551172 None:intergenic 55.0%
GGATTTCCTGCAGGGATAGG+TGG + chr7_4:49551403-49551422 Msa1159840:intron 55.0%
CAGGTCCACAGTCATCCAAG+AGG + chr7_4:49551472-49551491 Msa1159840:intron 55.0%
! CCACGTCCCCCAAATGCTTT+TGG - chr7_4:49552123-49552142 None:intergenic 55.0%
!! CCAAAAGCATTTGGGGGACG+TGG + chr7_4:49552120-49552139 Msa1159840:three_prime_UTR 55.0%
CCGTCCACAAATGTCCATGG+AGG + chr7_4:49552754-49552773 Msa1159840:three_prime_UTR 55.0%
GACGGAGCACAGTTGTGCTG+TGG + chr7_4:49546157-49546176 Msa1159840:intron 60.0%
CTTCGGTGGGCACAGTTCCA+TGG + chr7_4:49546923-49546942 Msa1159840:CDS 60.0%
TCTTCGTCCCCCCATCCAGT+AGG - chr7_4:49547273-49547292 None:intergenic 60.0%
TGGAGGAAGAGGAGGAGGTG+GGG + chr7_4:49547647-49547666 Msa1159840:CDS 60.0%
GGGCAGCCTCCATAAGGAGT+AGG - chr7_4:49549820-49549839 None:intergenic 60.0%
TGGAACGGGCACTATCCGTG+AGG + chr7_4:49551102-49551121 Msa1159840:intron 60.0%
AGTCCGGTATCCCCGTCAGT+TGG + chr7_4:49551147-49551166 Msa1159840:intron 60.0%
GTCCGGTATCCCCGTCAGTT+GGG + chr7_4:49551148-49551167 Msa1159840:intron 60.0%
ACTGGCGGGAACCCAACTGA+CGG - chr7_4:49551162-49551181 None:intergenic 60.0%
TCAGTTGGGTTCCCGCCAGT+TGG + chr7_4:49551162-49551181 Msa1159840:intron 60.0%
TGAGCTCCACCTATCCCTGC+AGG - chr7_4:49551412-49551431 None:intergenic 60.0%
GGAGAGGCGGCTGTGACTCT+AGG + chr7_4:49547201-49547220 Msa1159840:CDS 65.0%
GGAGGAAGAGGAGGAGGTGG+GGG + chr7_4:49547648-49547667 Msa1159840:CDS 65.0%
GAAGAGGAGGAGGTGGGGGA+AGG + chr7_4:49547652-49547671 Msa1159840:CDS 65.0%
AGGAGGAGGTGGGGGAAGGA+GGG + chr7_4:49547656-49547675 Msa1159840:CDS 65.0%
TGGCGGGAACCCAACTGACG+GGG - chr7_4:49551160-49551179 None:intergenic 65.0%
CTGGCGGGAACCCAACTGAC+GGG - chr7_4:49551161-49551180 None:intergenic 65.0%
GAGGAGGAGGTGGGGGAAGG+AGG + chr7_4:49547655-49547674 Msa1159840:CDS 70.0%
GGAGGAGGTGGGGGAAGGAG+GGG + chr7_4:49547657-49547676 Msa1159840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 49545728 49553094 49545728 ID=Msa1159840;Name=Msa1159840
chr7_4 mRNA 49545728 49553094 49545728 ID=Msa1159840-mRNA-1;Parent=Msa1159840;Name=Msa1159840-mRNA-1;_AED=0.31;_eAED=0.31;_QI=171|1|1|1|0.2|0.33|6|1778|310
chr7_4 exon 49545728 49545989 49545728 ID=Msa1159840-mRNA-1:exon:13662;Parent=Msa1159840-mRNA-1
chr7_4 exon 49546878 49547818 49546878 ID=Msa1159840-mRNA-1:exon:13663;Parent=Msa1159840-mRNA-1
chr7_4 exon 49548537 49548708 49548537 ID=Msa1159840-mRNA-1:exon:13664;Parent=Msa1159840-mRNA-1
chr7_4 exon 49549954 49550040 49549954 ID=Msa1159840-mRNA-1:exon:13665;Parent=Msa1159840-mRNA-1
chr7_4 exon 49551475 49552244 49551475 ID=Msa1159840-mRNA-1:exon:13666;Parent=Msa1159840-mRNA-1
chr7_4 exon 49552445 49553094 49552445 ID=Msa1159840-mRNA-1:exon:13667;Parent=Msa1159840-mRNA-1
chr7_4 five_prime_UTR 49545728 49545898 49545728 ID=Msa1159840-mRNA-1:five_prime_utr;Parent=Msa1159840-mRNA-1
chr7_4 CDS 49545899 49545989 49545899 ID=Msa1159840-mRNA-1:cds;Parent=Msa1159840-mRNA-1
chr7_4 CDS 49546878 49547719 49546878 ID=Msa1159840-mRNA-1:cds;Parent=Msa1159840-mRNA-1
chr7_4 three_prime_UTR 49547720 49547818 49547720 ID=Msa1159840-mRNA-1:three_prime_utr;Parent=Msa1159840-mRNA-1
chr7_4 three_prime_UTR 49548537 49548708 49548537 ID=Msa1159840-mRNA-1:three_prime_utr;Parent=Msa1159840-mRNA-1
chr7_4 three_prime_UTR 49549954 49550040 49549954 ID=Msa1159840-mRNA-1:three_prime_utr;Parent=Msa1159840-mRNA-1
chr7_4 three_prime_UTR 49551475 49552244 49551475 ID=Msa1159840-mRNA-1:three_prime_utr;Parent=Msa1159840-mRNA-1
chr7_4 three_prime_UTR 49552445 49553094 49552445 ID=Msa1159840-mRNA-1:three_prime_utr;Parent=Msa1159840-mRNA-1
Gene Sequence

>Msa1159840

ATGGATAATTGGAGAAGAAACCTCAGTAACCATCATCAAGTGGGTCAGTGGGGATCCTCCTTCTCATCCTATAACGGAAAACCACCTTTAGATAATAGGTTTCCAACAGTGCCTTTGTGGGAAAAGCAGTTTTGTGCTTCGGTGGGCACAGTTCCATGGCGAAAGCTAATAGAAGACAAGAGGTACATGTATATGCATCCCAAAGTGGTAAACTGGGACGACTCTGCTGTCAAAGAGGCATTCGACAATGCAAAAAACAGGTATTGGGCTGAGATCAACAACATTCCCTGGGACACACCATTGCCTGATCCTAACATTTACATAGATGATGTAGATTCGAATGCAAGTGTTGATTCTGAACTTTATTTGGATGTGGAAATAGAAGCAGAGGCCCGCCCCAACATAGAAGAAAAAGGAGAGGCGGCTGTGACTCTAGGAAGTTCTCTCCTCTTGAATCAGTCCTCTTCTGGTCTTGGATTGGGACCTACTGGATGGGGGGACGAAGAAGACGAAAAGTTAACAAAGCCTTCTGAACCAAATTATGCTGCTCTGGGATGGGAATCAAACCAACATGAAAATAATGAAACAAACTCTTGGGAACAGTATCATGCTCCCGTTGAACATGCTGCAAAAGAATATGGATGGCAAAATGGTCAGAATGATTCTCAGGGATGGAATCAGAGGGAGCGATATGGTGGTGACTTGTATAACAAGTATCAAGGAAGAAATAGTGGGAGAGGAAATTGGGGAACATGGGATGGATTTAACAGAAAGAAAGAAAACAACATGTCTTGGTCTAAGAACCATGGATATCATCATGGCACTAATGAGTATCAGATGAATAGAGGAGGAAGAAGAAATGGAGGAAGAGGAGGAGGTGGGGGAAGGAGGGGAAAATTTGCTTATAAGGTTGCTACTCCTAGTGCATGGTAA
Protein sequence

>Msa1159840

MDNWRRNLSNHHQVGQWGSSFSSYNGKPPLDNRFPTVPLWEKQFCASVGTVPWRKLIEDKRYMYMHPKVVNWDDSAVKEAFDNAKNRYWAEINNIPWDTPLPDPNIYIDDVDSNASVDSELYLDVEIEAEARPNIEEKGEAAVTLGSSLLLNQSSSGLGLGPTGWGDEEDEKLTKPSEPNYAALGWESNQHENNETNSWEQYHAPVEHAAKEYGWQNGQNDSQGWNQRERYGGDLYNKYQGRNSGRGNWGTWDGFNRKKENNMSWSKNHGYHHGTNEYQMNRGGRRNGGRGGGGGRRGKFAYKVATPSAW*