Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0941730 | XP_039682754.1 | 89.796 | 196 | 7 | 1 | 1 | 196 | 473 | 655 | 5.12e-120 | 365 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0941730 | sp|B0JUK5|TRMB_MICAN | 34.946 | 186 | 104 | 4 | 7 | 191 | 25 | 194 | 5.85e-28 | 107 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0941730 | A0A072U6K3 | 89.796 | 196 | 7 | 1 | 1 | 196 | 473 | 655 | 2.45e-120 | 365 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa0941730 | 0.818744 | 1.670958e-52 | -8.615850e-47 |
Msa0024680 | Msa0941730 | 0.801084 | 1.063623e-48 | -8.615850e-47 |
Msa0030380 | Msa0941730 | 0.809142 | 2.189969e-50 | -8.615850e-47 |
Msa0032840 | Msa0941730 | -0.800262 | 1.565051e-48 | -8.615850e-47 |
Msa0046750 | Msa0941730 | 0.815539 | 8.780380e-52 | -8.615850e-47 |
Msa0084650 | Msa0941730 | 0.823492 | 1.345720e-53 | -8.615850e-47 |
Msa0091770 | Msa0941730 | 0.805714 | 1.168304e-49 | -8.615850e-47 |
Msa0094100 | Msa0941730 | 0.813436 | 2.561961e-51 | -8.615850e-47 |
Msa0095380 | Msa0941730 | 0.811566 | 6.565765e-51 | -8.615850e-47 |
Msa0105420 | Msa0941730 | 0.805504 | 1.292952e-49 | -8.615850e-47 |
Msa0107250 | Msa0941730 | 0.805748 | 1.149313e-49 | -8.615850e-47 |
Msa0110970 | Msa0941730 | 0.809890 | 1.512895e-50 | -8.615850e-47 |
Msa0118400 | Msa0941730 | 0.816698 | 4.837022e-52 | -8.615850e-47 |
Msa0607200 | Msa0941730 | 0.816183 | 6.304501e-52 | -8.615850e-47 |
Msa0629370 | Msa0941730 | 0.813493 | 2.489104e-51 | -8.615850e-47 |
Msa0638070 | Msa0941730 | 0.813728 | 2.209574e-51 | -8.615850e-47 |
Msa0638280 | Msa0941730 | 0.815891 | 7.327457e-52 | -8.615850e-47 |
Msa0638320 | Msa0941730 | 0.808841 | 2.540632e-50 | -8.615850e-47 |
Msa0647380 | Msa0941730 | 0.804371 | 2.230304e-49 | -8.615850e-47 |
Msa0669850 | Msa0941730 | 0.805753 | 1.146173e-49 | -8.615850e-47 |
Msa0677270 | Msa0941730 | 0.808366 | 3.208704e-50 | -8.615850e-47 |
Msa0734660 | Msa0941730 | 0.816667 | 4.913886e-52 | -8.615850e-47 |
Msa0743260 | Msa0941730 | 0.807276 | 5.470934e-50 | -8.615850e-47 |
Msa0743720 | Msa0941730 | 0.818730 | 1.682645e-52 | -8.615850e-47 |
Msa0756630 | Msa0941730 | -0.814999 | 1.157075e-51 | -8.615850e-47 |
Msa0766810 | Msa0941730 | 0.807559 | 4.765291e-50 | -8.615850e-47 |
Msa0776220 | Msa0941730 | 0.815340 | 9.719766e-52 | -8.615850e-47 |
Msa0787470 | Msa0941730 | 0.808486 | 3.025620e-50 | -8.615850e-47 |
Msa0789570 | Msa0941730 | 0.809568 | 1.774606e-50 | -8.615850e-47 |
Msa0813670 | Msa0941730 | 0.810228 | 1.279436e-50 | -8.615850e-47 |
Msa0813720 | Msa0941730 | 0.802614 | 5.159426e-49 | -8.615850e-47 |
Msa0130570 | Msa0941730 | 0.818313 | 2.091731e-52 | -8.615850e-47 |
Msa0143430 | Msa0941730 | 0.806697 | 7.251912e-50 | -8.615850e-47 |
Msa0156650 | Msa0941730 | -0.800275 | 1.555698e-48 | -8.615850e-47 |
Msa0157290 | Msa0941730 | 0.818411 | 1.987510e-52 | -8.615850e-47 |
Msa0170580 | Msa0941730 | 0.805248 | 1.463201e-49 | -8.615850e-47 |
Msa0173740 | Msa0941730 | 0.807083 | 6.009981e-50 | -8.615850e-47 |
Msa0173820 | Msa0941730 | 0.806298 | 8.803746e-50 | -8.615850e-47 |
Msa0173830 | Msa0941730 | 0.801497 | 8.756659e-49 | -8.615850e-47 |
Msa0173990 | Msa0941730 | 0.808235 | 3.422325e-50 | -8.615850e-47 |
Msa0183620 | Msa0941730 | 0.808764 | 2.638239e-50 | -8.615850e-47 |
Msa0184020 | Msa0941730 | 0.807265 | 5.500445e-50 | -8.615850e-47 |
Msa0194970 | Msa0941730 | 0.803900 | 2.795239e-49 | -8.615850e-47 |
Msa0203030 | Msa0941730 | 0.807576 | 4.724632e-50 | -8.615850e-47 |
Msa0208630 | Msa0941730 | 0.811344 | 7.337362e-51 | -8.615850e-47 |
Msa0219190 | Msa0941730 | 0.815269 | 1.007973e-51 | -8.615850e-47 |
Msa0224730 | Msa0941730 | 0.806639 | 7.462256e-50 | -8.615850e-47 |
Msa0226890 | Msa0941730 | 0.800414 | 1.457312e-48 | -8.615850e-47 |
Msa0235890 | Msa0941730 | 0.808294 | 3.324630e-50 | -8.615850e-47 |
Msa0369570 | Msa0941730 | 0.812067 | 5.107178e-51 | -8.615850e-47 |
Msa0374850 | Msa0941730 | 0.801843 | 7.435632e-49 | -8.615850e-47 |
Msa0378080 | Msa0941730 | 0.804161 | 2.467414e-49 | -8.615850e-47 |
Msa0393950 | Msa0941730 | 0.811900 | 5.555687e-51 | -8.615850e-47 |
Msa0398640 | Msa0941730 | 0.807117 | 5.910775e-50 | -8.615850e-47 |
Msa0405370 | Msa0941730 | 0.804639 | 1.960960e-49 | -8.615850e-47 |
Msa0414950 | Msa0941730 | -0.812805 | 3.523483e-51 | -8.615850e-47 |
Msa0419820 | Msa0941730 | 0.854981 | 8.569008e-62 | -8.615850e-47 |
Msa0422830 | Msa0941730 | 0.803880 | 2.822757e-49 | -8.615850e-47 |
Msa0422910 | Msa0941730 | 0.809008 | 2.339648e-50 | -8.615850e-47 |
Msa0425010 | Msa0941730 | 0.811597 | 6.465834e-51 | -8.615850e-47 |
Msa0425940 | Msa0941730 | 0.805205 | 1.493801e-49 | -8.615850e-47 |
Msa0426160 | Msa0941730 | 0.804622 | 1.977639e-49 | -8.615850e-47 |
Msa0426330 | Msa0941730 | 0.816073 | 6.674053e-52 | -8.615850e-47 |
Msa0436050 | Msa0941730 | 0.814062 | 1.865122e-51 | -8.615850e-47 |
Msa0436280 | Msa0941730 | -0.806755 | 7.050553e-50 | -8.615850e-47 |
Msa0436500 | Msa0941730 | 0.817978 | 2.491602e-52 | -8.615850e-47 |
Msa0441800 | Msa0941730 | 0.813025 | 3.153917e-51 | -8.615850e-47 |
Msa0442850 | Msa0941730 | 0.806308 | 8.762318e-50 | -8.615850e-47 |
Msa0443500 | Msa0941730 | 0.800277 | 1.553983e-48 | -8.615850e-47 |
Msa0480320 | Msa0941730 | 0.827420 | 1.580295e-54 | -8.615850e-47 |
Msa0480980 | Msa0941730 | 0.812812 | 3.511878e-51 | -8.615850e-47 |
Msa0241640 | Msa0941730 | 0.825282 | 5.102331e-54 | -8.615850e-47 |
Msa0242270 | Msa0941730 | 0.814093 | 1.836143e-51 | -8.615850e-47 |
Msa0259370 | Msa0941730 | 0.801037 | 1.087781e-48 | -8.615850e-47 |
Msa0265820 | Msa0941730 | 0.812170 | 4.849997e-51 | -8.615850e-47 |
Msa0279790 | Msa0941730 | 0.835586 | 1.539377e-56 | -8.615850e-47 |
Msa0280490 | Msa0941730 | 0.807234 | 5.584217e-50 | -8.615850e-47 |
Msa0280900 | Msa0941730 | 0.804044 | 2.609821e-49 | -8.615850e-47 |
Msa0296760 | Msa0941730 | 0.822837 | 1.912537e-53 | -8.615850e-47 |
Msa0307830 | Msa0941730 | -0.802371 | 5.790395e-49 | -8.615850e-47 |
Msa0320100 | Msa0941730 | 0.817042 | 4.048741e-52 | -8.615850e-47 |
Msa0323610 | Msa0941730 | 0.819008 | 1.454907e-52 | -8.615850e-47 |
Msa0324550 | Msa0941730 | 0.818520 | 1.877872e-52 | -8.615850e-47 |
Msa0350990 | Msa0941730 | 0.814423 | 1.552369e-51 | -8.615850e-47 |
Msa0351030 | Msa0941730 | 0.813132 | 2.987662e-51 | -8.615850e-47 |
Msa0358170 | Msa0941730 | 0.804645 | 1.956008e-49 | -8.615850e-47 |
Msa0362780 | Msa0941730 | 0.806051 | 9.925650e-50 | -8.615850e-47 |
Msa0516320 | Msa0941730 | 0.809078 | 2.260419e-50 | -8.615850e-47 |
Msa0517110 | Msa0941730 | 0.800384 | 1.478516e-48 | -8.615850e-47 |
Msa0521880 | Msa0941730 | 0.817342 | 3.465588e-52 | -8.615850e-47 |
Msa0532300 | Msa0941730 | 0.819811 | 9.546201e-53 | -8.615850e-47 |
Msa0532330 | Msa0941730 | 0.828954 | 6.744049e-55 | -8.615850e-47 |
Msa0535030 | Msa0941730 | 0.816630 | 5.009703e-52 | -8.615850e-47 |
Msa0535060 | Msa0941730 | 0.816184 | 6.301240e-52 | -8.615850e-47 |
Msa0546380 | Msa0941730 | 0.802066 | 6.691673e-49 | -8.615850e-47 |
Msa0581760 | Msa0941730 | 0.808630 | 2.818177e-50 | -8.615850e-47 |
Msa0591060 | Msa0941730 | 0.812697 | 3.721244e-51 | -8.615850e-47 |
Msa0591770 | Msa0941730 | 0.823946 | 1.053029e-53 | -8.615850e-47 |
Msa0598460 | Msa0941730 | 0.808547 | 2.935943e-50 | -8.615850e-47 |
Msa0843640 | Msa0941730 | 0.803918 | 2.772114e-49 | -8.615850e-47 |
Msa0844560 | Msa0941730 | 0.810428 | 1.158240e-50 | -8.615850e-47 |
Msa0850960 | Msa0941730 | 0.800427 | 1.448461e-48 | -8.615850e-47 |
Msa0862100 | Msa0941730 | 0.800596 | 1.338290e-48 | -8.615850e-47 |
Msa0871400 | Msa0941730 | 0.806693 | 7.266719e-50 | -8.615850e-47 |
Msa0872310 | Msa0941730 | 0.804161 | 2.467423e-49 | -8.615850e-47 |
Msa0880140 | Msa0941730 | 0.818345 | 2.057612e-52 | -8.615850e-47 |
Msa0936270 | Msa0941730 | 0.823882 | 1.090313e-53 | -8.615850e-47 |
Msa0937670 | Msa0941730 | 0.817861 | 2.647078e-52 | -8.615850e-47 |
Msa0941710 | Msa0941730 | 0.877860 | 4.475791e-69 | -8.615850e-47 |
Msa0941730 | Msa0941750 | 0.877113 | 8.153973e-69 | -8.615850e-47 |
Msa0941730 | Msa0946320 | 0.836805 | 7.544079e-57 | -8.615850e-47 |
Msa0941730 | Msa0969570 | 0.809764 | 1.610006e-50 | -8.615850e-47 |
Msa0941730 | Msa1012370 | 0.801412 | 9.115073e-49 | -8.615850e-47 |
Msa0941730 | Msa1012810 | 0.800271 | 1.558589e-48 | -8.615850e-47 |
Msa0941730 | Msa1018790 | 0.815525 | 8.843678e-52 | -8.615850e-47 |
Msa0941730 | Msa1026760 | 0.819764 | 9.787567e-53 | -8.615850e-47 |
Msa0941730 | Msa1026790 | 0.820541 | 6.495284e-53 | -8.615850e-47 |
Msa0941730 | Msa1037920 | 0.811913 | 5.519955e-51 | -8.615850e-47 |
Msa0941730 | Msa1038050 | 0.803046 | 4.202748e-49 | -8.615850e-47 |
Msa0941730 | Msa1040830 | 0.818380 | 2.020222e-52 | -8.615850e-47 |
Msa0941730 | Msa1044340 | 0.805964 | 1.034903e-49 | -8.615850e-47 |
Msa0941730 | Msa1046300 | 0.801631 | 8.219811e-49 | -8.615850e-47 |
Msa0941730 | Msa1055260 | 0.802462 | 5.545882e-49 | -8.615850e-47 |
Msa0941730 | Msa1055280 | 0.802520 | 5.396854e-49 | -8.615850e-47 |
Msa0941730 | Msa1082700 | 0.817835 | 2.683582e-52 | -8.615850e-47 |
Msa0941730 | Msa1139810 | 0.807547 | 4.792720e-50 | -8.615850e-47 |
Msa0941730 | Msa1154160 | 0.801278 | 9.709400e-49 | -8.615850e-47 |
Msa0941730 | Msa1171690 | 0.803179 | 3.943864e-49 | -8.615850e-47 |
Msa0941730 | Msa1188940 | 0.803377 | 3.588352e-49 | -8.615850e-47 |
Msa0941730 | Msa1199220 | 0.807113 | 5.924333e-50 | -8.615850e-47 |
Msa0941730 | Msa1221560 | 0.810362 | 1.197250e-50 | -8.615850e-47 |
Msa0941730 | Msa1233890 | 0.817909 | 2.582011e-52 | -8.615850e-47 |
Msa0941730 | Msa1249870 | 0.806080 | 9.786151e-50 | -8.615850e-47 |
Msa0941730 | Msa1264020 | 0.822851 | 1.898779e-53 | -8.615850e-47 |
Msa0941730 | Msa1265960 | 0.803340 | 3.652138e-49 | -8.615850e-47 |
Msa0941730 | Msa1269580 | -0.802263 | 6.095732e-49 | -8.615850e-47 |
Msa0941730 | Msa1280130 | 0.813275 | 2.779141e-51 | -8.615850e-47 |
Msa0941730 | Msa1284520 | 0.812735 | 3.650827e-51 | -8.615850e-47 |
Msa0941730 | Msa1323000 | 0.813310 | 2.731128e-51 | -8.615850e-47 |
Msa0941730 | Msa1323190 | 0.811530 | 6.687143e-51 | -8.615850e-47 |
Msa0941730 | Msa1335860 | 0.801840 | 7.446400e-49 | -8.615850e-47 |
Msa0941730 | Msa1362510 | 0.802413 | 5.678017e-49 | -8.615850e-47 |
Msa0941730 | Msa1367080 | 0.802760 | 4.813858e-49 | -8.615850e-47 |
Msa0941730 | Msa1385620 | 0.806719 | 7.176518e-50 | -8.615850e-47 |
Msa0941730 | Msa1420060 | 0.811787 | 5.877799e-51 | -8.615850e-47 |
Msa0941730 | Msa1427760 | 0.804538 | 2.059215e-49 | -8.615850e-47 |
Msa0941730 | Msa1429250 | 0.821584 | 3.735495e-53 | -8.615850e-47 |
Msa0941730 | Msa1429360 | -0.806746 | 7.082952e-50 | -8.615850e-47 |
Msa0941730 | Msa1443290 | -0.804021 | 2.638582e-49 | -8.615850e-47 |
Msa0941730 | Msa1461250 | -0.801192 | 1.011175e-48 | -8.615850e-47 |
Msa0941730 | Msa1464830 | 0.804211 | 2.408179e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0941730 | MtrunA17_Chr6g0457691 | 89.796 | 196 | 7 | 1 | 1 | 196 | 532 | 714 | 1.78e-123 | 365 |
Msa0941730 | MtrunA17_Chr8g0337231 | 38.776 | 196 | 96 | 4 | 7 | 193 | 120 | 300 | 1.22e-38 | 134 |
Msa0941730 | MtrunA17_Chr8g0337241 | 36.735 | 196 | 100 | 4 | 7 | 193 | 83 | 263 | 1.30e-35 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0941730 | AT5G17660.1 | 38.624 | 189 | 100 | 3 | 8 | 193 | 116 | 291 | 2.94e-36 | 129 |
Find 36 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATCTCTTGTGGTTGATAT+TGG | 0.219246 | 6_3:-15673984 | Msa0941730:CDS |
AGGAAAGATTTGAACTTTCT+TGG | 0.253177 | 6_3:-15673786 | Msa0941730:CDS |
CGGAGAATGGCCAAAGTAAT+TGG | 0.279690 | 6_3:-15672490 | Msa0941730:CDS |
ATGAAAACCCATTTGGAGTT+AGG | 0.283264 | 6_3:-15672463 | Msa0941730:CDS |
AGATTTGAACTTTCTTGGTT+TGG | 0.339411 | 6_3:-15673781 | Msa0941730:CDS |
TGGCTTGATGAAAACCCATT+TGG | 0.372419 | 6_3:-15672470 | Msa0941730:CDS |
GGTAAGCTTGTTTCGGAGAA+TGG | 0.382011 | 6_3:-15672503 | Msa0941730:CDS |
CAATCTGACCTAACTCCAAA+TGG | 0.392554 | 6_3:+15672455 | None:intergenic |
CAACAGTTTGACATAAAGAA+TGG | 0.396181 | 6_3:-15673617 | Msa0941730:CDS |
TTGCAAGGGTAAGCTTGTTT+CGG | 0.396704 | 6_3:-15672510 | Msa0941730:CDS |
TCAATAAACCTGAAAATAGA+TGG | 0.404433 | 6_3:-15673104 | Msa0941730:CDS |
GTTGGTTCTTGTATCAATAC+AGG | 0.411516 | 6_3:-15673387 | Msa0941730:intron |
TTATTCCAGTTGATTTCAAA+AGG | 0.421314 | 6_3:+15674026 | None:intergenic |
GGTTTATTGAAATCAGGGTT+TGG | 0.423467 | 6_3:+15673117 | None:intergenic |
TTTCATCAAGCCAATTACTT+TGG | 0.437930 | 6_3:+15672480 | None:intergenic |
CATTTGGAGTTAGGTCAGAT+TGG | 0.439570 | 6_3:-15672454 | Msa0941730:CDS |
ATTTGGAGTTAGGTCAGATT+GGG | 0.448877 | 6_3:-15672453 | Msa0941730:CDS |
GTGGTGGATCTTCTAGCATC+TGG | 0.456954 | 6_3:-15673051 | Msa0941730:CDS |
TTCTTCTTGAAATGGCGAAA+AGG | 0.475726 | 6_3:-15673809 | Msa0941730:CDS |
TTTCAGGTTTATTGAAATCA+GGG | 0.480490 | 6_3:+15673112 | None:intergenic |
AACAGTTTGACATAAAGAAT+GGG | 0.487062 | 6_3:-15673616 | Msa0941730:intron |
TTCTTCTTACCCTGGAGAGT+TGG | 0.490193 | 6_3:-15673405 | Msa0941730:CDS |
TGGTTTGGAGATGAATGAAA+AGG | 0.513271 | 6_3:-15673766 | Msa0941730:intron |
GATACAAGAACCAACTCTCC+AGG | 0.523598 | 6_3:+15673395 | None:intergenic |
ATCTTTAATTGAAGCAGTGG+TGG | 0.525354 | 6_3:-15673067 | Msa0941730:CDS |
TATTCCAGTTGATTTCAAAA+GGG | 0.552524 | 6_3:+15674027 | None:intergenic |
CTTGTGGTTGATATTGGAAG+TGG | 0.560186 | 6_3:-15673978 | Msa0941730:intron |
AATCTGACCTAACTCCAAAT+GGG | 0.561481 | 6_3:+15672456 | None:intergenic |
TCAATCGTTTCTTCTTACCC+TGG | 0.565462 | 6_3:-15673413 | Msa0941730:CDS |
GAGATCTTTAATTGAAGCAG+TGG | 0.570067 | 6_3:-15673070 | Msa0941730:CDS |
TCTTCTAGCATCTGGTGGAA+AGG | 0.588936 | 6_3:-15673043 | Msa0941730:intron |
TTCTTGAAATGGCGAAAAGG+AGG | 0.590119 | 6_3:-15673806 | Msa0941730:CDS |
GTGGATCTTCTAGCATCTGG+TGG | 0.592765 | 6_3:-15673048 | Msa0941730:CDS |
TGAAAAGCTCAAATGTCAAG+AGG | 0.593352 | 6_3:+15673850 | None:intergenic |
TGACGCAACTCAATCTCTTG+TGG | 0.604729 | 6_3:-15673994 | Msa0941730:CDS |
ATACAAGAACCAACTCTCCA+GGG | 0.618263 | 6_3:+15673396 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAAAATGTAATAAATTTT+GGG | + | chr6_3:15673109-15673128 | None:intergenic | 10.0% |
!!! | AATCAAAATGTAATAAATTT+TGG | + | chr6_3:15673110-15673129 | None:intergenic | 10.0% |
!!! | ATCAAAATGTAATAAATTTT+GGG | + | chr6_3:15673109-15673128 | None:intergenic | 10.0% |
!!! | AATCAAAATGTAATAAATTT+TGG | + | chr6_3:15673110-15673129 | None:intergenic | 10.0% |
!!! | TTTCTTGATTTATCTATTTT+AGG | - | chr6_3:15672993-15673012 | Msa0941730:intron | 15.0% |
!! | AATGATTTATAAGATTAATC+GGG | + | chr6_3:15673515-15673534 | None:intergenic | 15.0% |
!! | CAATGATTTATAAGATTAAT+CGG | + | chr6_3:15673516-15673535 | None:intergenic | 15.0% |
!!! | TTTCTTGATTTATCTATTTT+AGG | - | chr6_3:15672993-15673012 | Msa0941730:intron | 15.0% |
!! | AATGATTTATAAGATTAATC+GGG | + | chr6_3:15673515-15673534 | None:intergenic | 15.0% |
!! | CAATGATTTATAAGATTAAT+CGG | + | chr6_3:15673516-15673535 | None:intergenic | 15.0% |
!! | AAAATATAGATAAGTGAAGA+GGG | + | chr6_3:15672772-15672791 | None:intergenic | 20.0% |
!! | AAAAATATAGATAAGTGAAG+AGG | + | chr6_3:15672773-15672792 | None:intergenic | 20.0% |
!! | GTTTATCACAATTAATAAGT+AGG | + | chr6_3:15673221-15673240 | None:intergenic | 20.0% |
!! | AAAATATAGATAAGTGAAGA+GGG | + | chr6_3:15672772-15672791 | None:intergenic | 20.0% |
!! | AAAAATATAGATAAGTGAAG+AGG | + | chr6_3:15672773-15672792 | None:intergenic | 20.0% |
!! | GTTTATCACAATTAATAAGT+AGG | + | chr6_3:15673221-15673240 | None:intergenic | 20.0% |
!! | TATTCCAGTTGATTTCAAAA+GGG | + | chr6_3:15672441-15672460 | None:intergenic | 25.0% |
!! | TTATTCCAGTTGATTTCAAA+AGG | + | chr6_3:15672442-15672461 | None:intergenic | 25.0% |
!!! | TTTCTTTTAAAACAGTCCTT+AGG | - | chr6_3:15672583-15672602 | Msa0941730:intron | 25.0% |
! | ACAAGCTAAAAATAAACCAA+CGG | + | chr6_3:15672806-15672825 | None:intergenic | 25.0% |
! | AACAGTTTGACATAAAGAAT+GGG | - | chr6_3:15672849-15672868 | Msa0941730:intron | 25.0% |
!!! | TAATGTTGTTGCTTTCATAT+AGG | - | chr6_3:15672872-15672891 | Msa0941730:intron | 25.0% |
! | GATTAGACTTTAGTAATTGA+TGG | + | chr6_3:15673300-15673319 | None:intergenic | 25.0% |
!!! | TTTCAGGTTTATTGAAATCA+GGG | + | chr6_3:15673356-15673375 | None:intergenic | 25.0% |
!!! | TTTTCAGGTTTATTGAAATC+AGG | + | chr6_3:15673357-15673376 | None:intergenic | 25.0% |
! | TCAATAAACCTGAAAATAGA+TGG | - | chr6_3:15673361-15673380 | Msa0941730:intron | 25.0% |
!! | TTATTTTCTACGATCTCAAT+TGG | - | chr6_3:15673715-15673734 | Msa0941730:intron | 25.0% |
!!! | ACAATTTTTGAGATATTGCA+AGG | - | chr6_3:15673940-15673959 | Msa0941730:intron | 25.0% |
!!! | CAATTTTTGAGATATTGCAA+GGG | - | chr6_3:15673941-15673960 | Msa0941730:intron | 25.0% |
!! | TATTCCAGTTGATTTCAAAA+GGG | + | chr6_3:15672441-15672460 | None:intergenic | 25.0% |
!! | TTATTCCAGTTGATTTCAAA+AGG | + | chr6_3:15672442-15672461 | None:intergenic | 25.0% |
!!! | TTTCTTTTAAAACAGTCCTT+AGG | - | chr6_3:15672583-15672602 | Msa0941730:intron | 25.0% |
! | ACAAGCTAAAAATAAACCAA+CGG | + | chr6_3:15672806-15672825 | None:intergenic | 25.0% |
! | AACAGTTTGACATAAAGAAT+GGG | - | chr6_3:15672849-15672868 | Msa0941730:intron | 25.0% |
!!! | TAATGTTGTTGCTTTCATAT+AGG | - | chr6_3:15672872-15672891 | Msa0941730:intron | 25.0% |
! | GATTAGACTTTAGTAATTGA+TGG | + | chr6_3:15673300-15673319 | None:intergenic | 25.0% |
!!! | TTTCAGGTTTATTGAAATCA+GGG | + | chr6_3:15673356-15673375 | None:intergenic | 25.0% |
!!! | TTTTCAGGTTTATTGAAATC+AGG | + | chr6_3:15673357-15673376 | None:intergenic | 25.0% |
! | TCAATAAACCTGAAAATAGA+TGG | - | chr6_3:15673361-15673380 | Msa0941730:intron | 25.0% |
!! | TTATTTTCTACGATCTCAAT+TGG | - | chr6_3:15673715-15673734 | Msa0941730:intron | 25.0% |
!!! | ACAATTTTTGAGATATTGCA+AGG | - | chr6_3:15673940-15673959 | Msa0941730:intron | 25.0% |
!!! | CAATTTTTGAGATATTGCAA+GGG | - | chr6_3:15673941-15673960 | Msa0941730:intron | 25.0% |
!! | TGGACTTTTTCTTCTTGAAA+TGG | - | chr6_3:15672648-15672667 | Msa0941730:intron | 30.0% |
AGGAAAGATTTGAACTTTCT+TGG | - | chr6_3:15672679-15672698 | Msa0941730:intron | 30.0% | |
AGATTTGAACTTTCTTGGTT+TGG | - | chr6_3:15672684-15672703 | Msa0941730:intron | 30.0% | |
! | ATTTTTCTTACGTTAACCGT+TGG | - | chr6_3:15672787-15672806 | Msa0941730:intron | 30.0% |
CAACAGTTTGACATAAAGAA+TGG | - | chr6_3:15672848-15672867 | Msa0941730:intron | 30.0% | |
AGTAGGTTTGAATAAGTGAT+TGG | + | chr6_3:15673204-15673223 | None:intergenic | 30.0% | |
CTTTAGTAATTGATGGAGAA+AGG | + | chr6_3:15673293-15673312 | None:intergenic | 30.0% | |
!! | CTATGTTTTCAAGATGAGTA+AGG | + | chr6_3:15673483-15673502 | None:intergenic | 30.0% |
TTGTACTAAACAACGTATCA+TGG | + | chr6_3:15673629-15673648 | None:intergenic | 30.0% | |
GTTATAGCACTATAATGTAG+AGG | - | chr6_3:15673677-15673696 | Msa0941730:intron | 30.0% | |
TTTCATCAAGCCAATTACTT+TGG | + | chr6_3:15673988-15674007 | None:intergenic | 30.0% | |
!! | TGGACTTTTTCTTCTTGAAA+TGG | - | chr6_3:15672648-15672667 | Msa0941730:intron | 30.0% |
AGGAAAGATTTGAACTTTCT+TGG | - | chr6_3:15672679-15672698 | Msa0941730:intron | 30.0% | |
AGATTTGAACTTTCTTGGTT+TGG | - | chr6_3:15672684-15672703 | Msa0941730:intron | 30.0% | |
! | ATTTTTCTTACGTTAACCGT+TGG | - | chr6_3:15672787-15672806 | Msa0941730:intron | 30.0% |
CAACAGTTTGACATAAAGAA+TGG | - | chr6_3:15672848-15672867 | Msa0941730:intron | 30.0% | |
AGTAGGTTTGAATAAGTGAT+TGG | + | chr6_3:15673204-15673223 | None:intergenic | 30.0% | |
CTTTAGTAATTGATGGAGAA+AGG | + | chr6_3:15673293-15673312 | None:intergenic | 30.0% | |
!! | CTATGTTTTCAAGATGAGTA+AGG | + | chr6_3:15673483-15673502 | None:intergenic | 30.0% |
TTGTACTAAACAACGTATCA+TGG | + | chr6_3:15673629-15673648 | None:intergenic | 30.0% | |
GTTATAGCACTATAATGTAG+AGG | - | chr6_3:15673677-15673696 | Msa0941730:intron | 30.0% | |
TTTCATCAAGCCAATTACTT+TGG | + | chr6_3:15673988-15674007 | None:intergenic | 30.0% | |
!!! | CATACCCTTTTGAAATCAAC+TGG | - | chr6_3:15672434-15672453 | Msa0941730:CDS | 35.0% |
! | CAATCTCTTGTGGTTGATAT+TGG | - | chr6_3:15672481-15672500 | Msa0941730:CDS | 35.0% |
TGAAAAGCTCAAATGTCAAG+AGG | + | chr6_3:15672618-15672637 | None:intergenic | 35.0% | |
! | ACATTTGAGCTTTTCATGAC+AGG | - | chr6_3:15672622-15672641 | Msa0941730:intron | 35.0% |
TTCTTCTTGAAATGGCGAAA+AGG | - | chr6_3:15672656-15672675 | Msa0941730:intron | 35.0% | |
! | TGGTTTGGAGATGAATGAAA+AGG | - | chr6_3:15672699-15672718 | Msa0941730:intron | 35.0% |
! | GTTGGTTCTTGTATCAATAC+AGG | - | chr6_3:15673078-15673097 | Msa0941730:CDS | 35.0% |
TGAATAAGTGATTGGTGCAA+TGG | + | chr6_3:15673196-15673215 | None:intergenic | 35.0% | |
GGTTTATTGAAATCAGGGTT+TGG | + | chr6_3:15673351-15673370 | None:intergenic | 35.0% | |
! | AGCATTCTCCATCTATTTTC+AGG | + | chr6_3:15673372-15673391 | None:intergenic | 35.0% |
GAGATCTTTAATTGAAGCAG+TGG | - | chr6_3:15673395-15673414 | Msa0941730:CDS | 35.0% | |
ATCTTTAATTGAAGCAGTGG+TGG | - | chr6_3:15673398-15673417 | Msa0941730:CDS | 35.0% | |
AAATCATTGCTCGTAGCATT+TGG | - | chr6_3:15673527-15673546 | Msa0941730:intron | 35.0% | |
AATCATTGCTCGTAGCATTT+GGG | - | chr6_3:15673528-15673547 | Msa0941730:intron | 35.0% | |
TTGTCAAATAGCAGCTATAG+TGG | - | chr6_3:15673578-15673597 | Msa0941730:intron | 35.0% | |
!!! | CAATTGGCAATACTGGTTTT+CGG | - | chr6_3:15673731-15673750 | Msa0941730:intron | 35.0% |
TGAGATTCTCAACATTGATC+AGG | - | chr6_3:15673871-15673890 | Msa0941730:intron | 35.0% | |
! | ATGAAAACCCATTTGGAGTT+AGG | - | chr6_3:15674002-15674021 | Msa0941730:CDS | 35.0% |
AATCTGACCTAACTCCAAAT+GGG | + | chr6_3:15674012-15674031 | None:intergenic | 35.0% | |
! | ATTTGGAGTTAGGTCAGATT+GGG | - | chr6_3:15674012-15674031 | Msa0941730:CDS | 35.0% |
!!! | CATACCCTTTTGAAATCAAC+TGG | - | chr6_3:15672434-15672453 | Msa0941730:CDS | 35.0% |
! | CAATCTCTTGTGGTTGATAT+TGG | - | chr6_3:15672481-15672500 | Msa0941730:CDS | 35.0% |
TGAAAAGCTCAAATGTCAAG+AGG | + | chr6_3:15672618-15672637 | None:intergenic | 35.0% | |
! | ACATTTGAGCTTTTCATGAC+AGG | - | chr6_3:15672622-15672641 | Msa0941730:intron | 35.0% |
TTCTTCTTGAAATGGCGAAA+AGG | - | chr6_3:15672656-15672675 | Msa0941730:intron | 35.0% | |
! | TGGTTTGGAGATGAATGAAA+AGG | - | chr6_3:15672699-15672718 | Msa0941730:intron | 35.0% |
! | GTTGGTTCTTGTATCAATAC+AGG | - | chr6_3:15673078-15673097 | Msa0941730:CDS | 35.0% |
TGAATAAGTGATTGGTGCAA+TGG | + | chr6_3:15673196-15673215 | None:intergenic | 35.0% | |
GGTTTATTGAAATCAGGGTT+TGG | + | chr6_3:15673351-15673370 | None:intergenic | 35.0% | |
! | AGCATTCTCCATCTATTTTC+AGG | + | chr6_3:15673372-15673391 | None:intergenic | 35.0% |
GAGATCTTTAATTGAAGCAG+TGG | - | chr6_3:15673395-15673414 | Msa0941730:CDS | 35.0% | |
ATCTTTAATTGAAGCAGTGG+TGG | - | chr6_3:15673398-15673417 | Msa0941730:CDS | 35.0% | |
AAATCATTGCTCGTAGCATT+TGG | - | chr6_3:15673527-15673546 | Msa0941730:intron | 35.0% | |
AATCATTGCTCGTAGCATTT+GGG | - | chr6_3:15673528-15673547 | Msa0941730:intron | 35.0% | |
TTGTCAAATAGCAGCTATAG+TGG | - | chr6_3:15673578-15673597 | Msa0941730:intron | 35.0% | |
!!! | CAATTGGCAATACTGGTTTT+CGG | - | chr6_3:15673731-15673750 | Msa0941730:intron | 35.0% |
TGAGATTCTCAACATTGATC+AGG | - | chr6_3:15673871-15673890 | Msa0941730:intron | 35.0% | |
! | ATGAAAACCCATTTGGAGTT+AGG | - | chr6_3:15674002-15674021 | Msa0941730:CDS | 35.0% |
AATCTGACCTAACTCCAAAT+GGG | + | chr6_3:15674012-15674031 | None:intergenic | 35.0% | |
! | ATTTGGAGTTAGGTCAGATT+GGG | - | chr6_3:15674012-15674031 | Msa0941730:CDS | 35.0% |
! | CTTGTGGTTGATATTGGAAG+TGG | - | chr6_3:15672487-15672506 | Msa0941730:CDS | 40.0% |
CAAGAGGAACATGTAACCTA+AGG | + | chr6_3:15672602-15672621 | None:intergenic | 40.0% | |
TTCTTGAAATGGCGAAAAGG+AGG | - | chr6_3:15672659-15672678 | Msa0941730:intron | 40.0% | |
AGCAAAAAAGGCTAGGAACA+AGG | + | chr6_3:15672748-15672767 | None:intergenic | 40.0% | |
TCAATCGTTTCTTCTTACCC+TGG | - | chr6_3:15673052-15673071 | Msa0941730:CDS | 40.0% | |
ATACAAGAACCAACTCTCCA+GGG | + | chr6_3:15673072-15673091 | None:intergenic | 40.0% | |
ATAAGTGATTGGTGCAATGG+TGG | + | chr6_3:15673193-15673212 | None:intergenic | 40.0% | |
ATCATTGCTCGTAGCATTTG+GGG | - | chr6_3:15673529-15673548 | Msa0941730:intron | 40.0% | |
ACGATCTCAATTGGCAATAC+TGG | - | chr6_3:15673724-15673743 | Msa0941730:intron | 40.0% | |
! | GGTCTTTTTGCAATCTGATG+TGG | - | chr6_3:15673892-15673911 | Msa0941730:intron | 40.0% |
! | TTGCAAGGGTAAGCTTGTTT+CGG | - | chr6_3:15673955-15673974 | Msa0941730:intron | 40.0% |
TGGCTTGATGAAAACCCATT+TGG | - | chr6_3:15673995-15674014 | Msa0941730:CDS | 40.0% | |
CAATCTGACCTAACTCCAAA+TGG | + | chr6_3:15674013-15674032 | None:intergenic | 40.0% | |
! | CATTTGGAGTTAGGTCAGAT+TGG | - | chr6_3:15674011-15674030 | Msa0941730:CDS | 40.0% |
! | CTTGTGGTTGATATTGGAAG+TGG | - | chr6_3:15672487-15672506 | Msa0941730:CDS | 40.0% |
CAAGAGGAACATGTAACCTA+AGG | + | chr6_3:15672602-15672621 | None:intergenic | 40.0% | |
TTCTTGAAATGGCGAAAAGG+AGG | - | chr6_3:15672659-15672678 | Msa0941730:intron | 40.0% | |
AGCAAAAAAGGCTAGGAACA+AGG | + | chr6_3:15672748-15672767 | None:intergenic | 40.0% | |
TCAATCGTTTCTTCTTACCC+TGG | - | chr6_3:15673052-15673071 | Msa0941730:CDS | 40.0% | |
ATACAAGAACCAACTCTCCA+GGG | + | chr6_3:15673072-15673091 | None:intergenic | 40.0% | |
ATAAGTGATTGGTGCAATGG+TGG | + | chr6_3:15673193-15673212 | None:intergenic | 40.0% | |
ATCATTGCTCGTAGCATTTG+GGG | - | chr6_3:15673529-15673548 | Msa0941730:intron | 40.0% | |
ACGATCTCAATTGGCAATAC+TGG | - | chr6_3:15673724-15673743 | Msa0941730:intron | 40.0% | |
! | GGTCTTTTTGCAATCTGATG+TGG | - | chr6_3:15673892-15673911 | Msa0941730:intron | 40.0% |
! | TTGCAAGGGTAAGCTTGTTT+CGG | - | chr6_3:15673955-15673974 | Msa0941730:intron | 40.0% |
TGGCTTGATGAAAACCCATT+TGG | - | chr6_3:15673995-15674014 | Msa0941730:CDS | 40.0% | |
CAATCTGACCTAACTCCAAA+TGG | + | chr6_3:15674013-15674032 | None:intergenic | 40.0% | |
! | CATTTGGAGTTAGGTCAGAT+TGG | - | chr6_3:15674011-15674030 | Msa0941730:CDS | 40.0% |
TGACGCAACTCAATCTCTTG+TGG | - | chr6_3:15672471-15672490 | Msa0941730:CDS | 45.0% | |
! | GAGCTTTTCATGACAGGCAA+TGG | - | chr6_3:15672628-15672647 | Msa0941730:intron | 45.0% |
GGCAGGTGATGTAACAAGTA+TGG | + | chr6_3:15672727-15672746 | None:intergenic | 45.0% | |
AAAAAGGCTAGGAACAAGGC+AGG | + | chr6_3:15672744-15672763 | None:intergenic | 45.0% | |
AGTGAAGAGGGCAGCAAAAA+AGG | + | chr6_3:15672760-15672779 | None:intergenic | 45.0% | |
!!! | TTAGCTTGTTTTGCGCTGTC+TGG | - | chr6_3:15672817-15672836 | Msa0941730:intron | 45.0% |
TTCTTCTTACCCTGGAGAGT+TGG | - | chr6_3:15673060-15673079 | Msa0941730:CDS | 45.0% | |
GATACAAGAACCAACTCTCC+AGG | + | chr6_3:15673073-15673092 | None:intergenic | 45.0% | |
CGTATACATGGCAGCACTAA+TGG | + | chr6_3:15673152-15673171 | None:intergenic | 45.0% | |
CATCAACGGAGACGTATACA+TGG | + | chr6_3:15673164-15673183 | None:intergenic | 45.0% | |
AATGGTGGCAGTGACATCAA+CGG | + | chr6_3:15673178-15673197 | None:intergenic | 45.0% | |
TCTTCTAGCATCTGGTGGAA+AGG | - | chr6_3:15673422-15673441 | Msa0941730:CDS | 45.0% | |
! | GGTAAGCTTGTTTCGGAGAA+TGG | - | chr6_3:15673962-15673981 | Msa0941730:intron | 45.0% |
CGGAGAATGGCCAAAGTAAT+TGG | - | chr6_3:15673975-15673994 | Msa0941730:intron | 45.0% | |
TGACGCAACTCAATCTCTTG+TGG | - | chr6_3:15672471-15672490 | Msa0941730:CDS | 45.0% | |
! | GAGCTTTTCATGACAGGCAA+TGG | - | chr6_3:15672628-15672647 | Msa0941730:intron | 45.0% |
GGCAGGTGATGTAACAAGTA+TGG | + | chr6_3:15672727-15672746 | None:intergenic | 45.0% | |
AAAAAGGCTAGGAACAAGGC+AGG | + | chr6_3:15672744-15672763 | None:intergenic | 45.0% | |
AGTGAAGAGGGCAGCAAAAA+AGG | + | chr6_3:15672760-15672779 | None:intergenic | 45.0% | |
!!! | TTAGCTTGTTTTGCGCTGTC+TGG | - | chr6_3:15672817-15672836 | Msa0941730:intron | 45.0% |
TTCTTCTTACCCTGGAGAGT+TGG | - | chr6_3:15673060-15673079 | Msa0941730:CDS | 45.0% | |
GATACAAGAACCAACTCTCC+AGG | + | chr6_3:15673073-15673092 | None:intergenic | 45.0% | |
CGTATACATGGCAGCACTAA+TGG | + | chr6_3:15673152-15673171 | None:intergenic | 45.0% | |
CATCAACGGAGACGTATACA+TGG | + | chr6_3:15673164-15673183 | None:intergenic | 45.0% | |
AATGGTGGCAGTGACATCAA+CGG | + | chr6_3:15673178-15673197 | None:intergenic | 45.0% | |
TCTTCTAGCATCTGGTGGAA+AGG | - | chr6_3:15673422-15673441 | Msa0941730:CDS | 45.0% | |
! | GGTAAGCTTGTTTCGGAGAA+TGG | - | chr6_3:15673962-15673981 | Msa0941730:intron | 45.0% |
CGGAGAATGGCCAAAGTAAT+TGG | - | chr6_3:15673975-15673994 | Msa0941730:intron | 45.0% | |
AGAGGGCAGCAAAAAAGGCT+AGG | + | chr6_3:15672755-15672774 | None:intergenic | 50.0% | |
!! | GTGGTGGATCTTCTAGCATC+TGG | - | chr6_3:15673414-15673433 | Msa0941730:CDS | 50.0% |
GTGGATCTTCTAGCATCTGG+TGG | - | chr6_3:15673417-15673436 | Msa0941730:CDS | 50.0% | |
AGAGGGCAGCAAAAAAGGCT+AGG | + | chr6_3:15672755-15672774 | None:intergenic | 50.0% | |
!! | GTGGTGGATCTTCTAGCATC+TGG | - | chr6_3:15673414-15673433 | Msa0941730:CDS | 50.0% |
GTGGATCTTCTAGCATCTGG+TGG | - | chr6_3:15673417-15673436 | Msa0941730:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 15672433 | 15674054 | 15672433 | ID=Msa0941730;Name=Msa0941730 |
chr6_3 | mRNA | 15672433 | 15674054 | 15672433 | ID=Msa0941730-mRNA-1;Parent=Msa0941730;Name=Msa0941730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.8|0.66|0.83|0.8|0.83|6|0|196 |
chr6_3 | exon | 15672433 | 15672594 | 15672433 | ID=Msa0941730-mRNA-1:exon:4783;Parent=Msa0941730-mRNA-1 |
chr6_3 | exon | 15673044 | 15673142 | 15673044 | ID=Msa0941730-mRNA-1:exon:4782;Parent=Msa0941730-mRNA-1 |
chr6_3 | exon | 15673388 | 15673472 | 15673388 | ID=Msa0941730-mRNA-1:exon:4781;Parent=Msa0941730-mRNA-1 |
chr6_3 | exon | 15673617 | 15673666 | 15673617 | ID=Msa0941730-mRNA-1:exon:4780;Parent=Msa0941730-mRNA-1 |
chr6_3 | exon | 15673767 | 15673882 | 15673767 | ID=Msa0941730-mRNA-1:exon:4779;Parent=Msa0941730-mRNA-1 |
chr6_3 | exon | 15673979 | 15674054 | 15673979 | ID=Msa0941730-mRNA-1:exon:4778;Parent=Msa0941730-mRNA-1 |
chr6_3 | CDS | 15673979 | 15674054 | 15673979 | ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1 |
chr6_3 | CDS | 15673767 | 15673882 | 15673767 | ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1 |
chr6_3 | CDS | 15673617 | 15673666 | 15673617 | ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1 |
chr6_3 | CDS | 15673388 | 15673472 | 15673388 | ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1 |
chr6_3 | CDS | 15673044 | 15673142 | 15673044 | ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1 |
chr6_3 | CDS | 15672433 | 15672594 | 15672433 | ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1 |
Gene Sequence |
Protein sequence |