AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0941730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941730 MtrunA17_Chr6g0457691 89.796 196 7 1 1 196 532 714 1.78e-123 365
Msa0941730 MtrunA17_Chr8g0337231 38.776 196 96 4 7 193 120 300 1.22e-38 134
Msa0941730 MtrunA17_Chr8g0337241 36.735 196 100 4 7 193 83 263 1.30e-35 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941730 AT5G17660.1 38.624 189 100 3 8 193 116 291 2.94e-36 129

Find 36 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTCTTGTGGTTGATAT+TGG 0.219246 6_3:-15673984 Msa0941730:CDS
AGGAAAGATTTGAACTTTCT+TGG 0.253177 6_3:-15673786 Msa0941730:CDS
CGGAGAATGGCCAAAGTAAT+TGG 0.279690 6_3:-15672490 Msa0941730:CDS
ATGAAAACCCATTTGGAGTT+AGG 0.283264 6_3:-15672463 Msa0941730:CDS
AGATTTGAACTTTCTTGGTT+TGG 0.339411 6_3:-15673781 Msa0941730:CDS
TGGCTTGATGAAAACCCATT+TGG 0.372419 6_3:-15672470 Msa0941730:CDS
GGTAAGCTTGTTTCGGAGAA+TGG 0.382011 6_3:-15672503 Msa0941730:CDS
CAATCTGACCTAACTCCAAA+TGG 0.392554 6_3:+15672455 None:intergenic
CAACAGTTTGACATAAAGAA+TGG 0.396181 6_3:-15673617 Msa0941730:CDS
TTGCAAGGGTAAGCTTGTTT+CGG 0.396704 6_3:-15672510 Msa0941730:CDS
TCAATAAACCTGAAAATAGA+TGG 0.404433 6_3:-15673104 Msa0941730:CDS
GTTGGTTCTTGTATCAATAC+AGG 0.411516 6_3:-15673387 Msa0941730:intron
TTATTCCAGTTGATTTCAAA+AGG 0.421314 6_3:+15674026 None:intergenic
GGTTTATTGAAATCAGGGTT+TGG 0.423467 6_3:+15673117 None:intergenic
TTTCATCAAGCCAATTACTT+TGG 0.437930 6_3:+15672480 None:intergenic
CATTTGGAGTTAGGTCAGAT+TGG 0.439570 6_3:-15672454 Msa0941730:CDS
ATTTGGAGTTAGGTCAGATT+GGG 0.448877 6_3:-15672453 Msa0941730:CDS
GTGGTGGATCTTCTAGCATC+TGG 0.456954 6_3:-15673051 Msa0941730:CDS
TTCTTCTTGAAATGGCGAAA+AGG 0.475726 6_3:-15673809 Msa0941730:CDS
TTTCAGGTTTATTGAAATCA+GGG 0.480490 6_3:+15673112 None:intergenic
AACAGTTTGACATAAAGAAT+GGG 0.487062 6_3:-15673616 Msa0941730:intron
TTCTTCTTACCCTGGAGAGT+TGG 0.490193 6_3:-15673405 Msa0941730:CDS
TGGTTTGGAGATGAATGAAA+AGG 0.513271 6_3:-15673766 Msa0941730:intron
GATACAAGAACCAACTCTCC+AGG 0.523598 6_3:+15673395 None:intergenic
ATCTTTAATTGAAGCAGTGG+TGG 0.525354 6_3:-15673067 Msa0941730:CDS
TATTCCAGTTGATTTCAAAA+GGG 0.552524 6_3:+15674027 None:intergenic
CTTGTGGTTGATATTGGAAG+TGG 0.560186 6_3:-15673978 Msa0941730:intron
AATCTGACCTAACTCCAAAT+GGG 0.561481 6_3:+15672456 None:intergenic
TCAATCGTTTCTTCTTACCC+TGG 0.565462 6_3:-15673413 Msa0941730:CDS
GAGATCTTTAATTGAAGCAG+TGG 0.570067 6_3:-15673070 Msa0941730:CDS
TCTTCTAGCATCTGGTGGAA+AGG 0.588936 6_3:-15673043 Msa0941730:intron
TTCTTGAAATGGCGAAAAGG+AGG 0.590119 6_3:-15673806 Msa0941730:CDS
GTGGATCTTCTAGCATCTGG+TGG 0.592765 6_3:-15673048 Msa0941730:CDS
TGAAAAGCTCAAATGTCAAG+AGG 0.593352 6_3:+15673850 None:intergenic
TGACGCAACTCAATCTCTTG+TGG 0.604729 6_3:-15673994 Msa0941730:CDS
ATACAAGAACCAACTCTCCA+GGG 0.618263 6_3:+15673396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAAATGTAATAAATTTT+GGG + chr6_3:15673109-15673128 None:intergenic 10.0%
!!! AATCAAAATGTAATAAATTT+TGG + chr6_3:15673110-15673129 None:intergenic 10.0%
!!! ATCAAAATGTAATAAATTTT+GGG + chr6_3:15673109-15673128 None:intergenic 10.0%
!!! AATCAAAATGTAATAAATTT+TGG + chr6_3:15673110-15673129 None:intergenic 10.0%
!!! TTTCTTGATTTATCTATTTT+AGG - chr6_3:15672993-15673012 Msa0941730:intron 15.0%
!! AATGATTTATAAGATTAATC+GGG + chr6_3:15673515-15673534 None:intergenic 15.0%
!! CAATGATTTATAAGATTAAT+CGG + chr6_3:15673516-15673535 None:intergenic 15.0%
!!! TTTCTTGATTTATCTATTTT+AGG - chr6_3:15672993-15673012 Msa0941730:intron 15.0%
!! AATGATTTATAAGATTAATC+GGG + chr6_3:15673515-15673534 None:intergenic 15.0%
!! CAATGATTTATAAGATTAAT+CGG + chr6_3:15673516-15673535 None:intergenic 15.0%
!! AAAATATAGATAAGTGAAGA+GGG + chr6_3:15672772-15672791 None:intergenic 20.0%
!! AAAAATATAGATAAGTGAAG+AGG + chr6_3:15672773-15672792 None:intergenic 20.0%
!! GTTTATCACAATTAATAAGT+AGG + chr6_3:15673221-15673240 None:intergenic 20.0%
!! AAAATATAGATAAGTGAAGA+GGG + chr6_3:15672772-15672791 None:intergenic 20.0%
!! AAAAATATAGATAAGTGAAG+AGG + chr6_3:15672773-15672792 None:intergenic 20.0%
!! GTTTATCACAATTAATAAGT+AGG + chr6_3:15673221-15673240 None:intergenic 20.0%
!! TATTCCAGTTGATTTCAAAA+GGG + chr6_3:15672441-15672460 None:intergenic 25.0%
!! TTATTCCAGTTGATTTCAAA+AGG + chr6_3:15672442-15672461 None:intergenic 25.0%
!!! TTTCTTTTAAAACAGTCCTT+AGG - chr6_3:15672583-15672602 Msa0941730:intron 25.0%
! ACAAGCTAAAAATAAACCAA+CGG + chr6_3:15672806-15672825 None:intergenic 25.0%
! AACAGTTTGACATAAAGAAT+GGG - chr6_3:15672849-15672868 Msa0941730:intron 25.0%
!!! TAATGTTGTTGCTTTCATAT+AGG - chr6_3:15672872-15672891 Msa0941730:intron 25.0%
! GATTAGACTTTAGTAATTGA+TGG + chr6_3:15673300-15673319 None:intergenic 25.0%
!!! TTTCAGGTTTATTGAAATCA+GGG + chr6_3:15673356-15673375 None:intergenic 25.0%
!!! TTTTCAGGTTTATTGAAATC+AGG + chr6_3:15673357-15673376 None:intergenic 25.0%
! TCAATAAACCTGAAAATAGA+TGG - chr6_3:15673361-15673380 Msa0941730:intron 25.0%
!! TTATTTTCTACGATCTCAAT+TGG - chr6_3:15673715-15673734 Msa0941730:intron 25.0%
!!! ACAATTTTTGAGATATTGCA+AGG - chr6_3:15673940-15673959 Msa0941730:intron 25.0%
!!! CAATTTTTGAGATATTGCAA+GGG - chr6_3:15673941-15673960 Msa0941730:intron 25.0%
!! TATTCCAGTTGATTTCAAAA+GGG + chr6_3:15672441-15672460 None:intergenic 25.0%
!! TTATTCCAGTTGATTTCAAA+AGG + chr6_3:15672442-15672461 None:intergenic 25.0%
!!! TTTCTTTTAAAACAGTCCTT+AGG - chr6_3:15672583-15672602 Msa0941730:intron 25.0%
! ACAAGCTAAAAATAAACCAA+CGG + chr6_3:15672806-15672825 None:intergenic 25.0%
! AACAGTTTGACATAAAGAAT+GGG - chr6_3:15672849-15672868 Msa0941730:intron 25.0%
!!! TAATGTTGTTGCTTTCATAT+AGG - chr6_3:15672872-15672891 Msa0941730:intron 25.0%
! GATTAGACTTTAGTAATTGA+TGG + chr6_3:15673300-15673319 None:intergenic 25.0%
!!! TTTCAGGTTTATTGAAATCA+GGG + chr6_3:15673356-15673375 None:intergenic 25.0%
!!! TTTTCAGGTTTATTGAAATC+AGG + chr6_3:15673357-15673376 None:intergenic 25.0%
! TCAATAAACCTGAAAATAGA+TGG - chr6_3:15673361-15673380 Msa0941730:intron 25.0%
!! TTATTTTCTACGATCTCAAT+TGG - chr6_3:15673715-15673734 Msa0941730:intron 25.0%
!!! ACAATTTTTGAGATATTGCA+AGG - chr6_3:15673940-15673959 Msa0941730:intron 25.0%
!!! CAATTTTTGAGATATTGCAA+GGG - chr6_3:15673941-15673960 Msa0941730:intron 25.0%
!! TGGACTTTTTCTTCTTGAAA+TGG - chr6_3:15672648-15672667 Msa0941730:intron 30.0%
AGGAAAGATTTGAACTTTCT+TGG - chr6_3:15672679-15672698 Msa0941730:intron 30.0%
AGATTTGAACTTTCTTGGTT+TGG - chr6_3:15672684-15672703 Msa0941730:intron 30.0%
! ATTTTTCTTACGTTAACCGT+TGG - chr6_3:15672787-15672806 Msa0941730:intron 30.0%
CAACAGTTTGACATAAAGAA+TGG - chr6_3:15672848-15672867 Msa0941730:intron 30.0%
AGTAGGTTTGAATAAGTGAT+TGG + chr6_3:15673204-15673223 None:intergenic 30.0%
CTTTAGTAATTGATGGAGAA+AGG + chr6_3:15673293-15673312 None:intergenic 30.0%
!! CTATGTTTTCAAGATGAGTA+AGG + chr6_3:15673483-15673502 None:intergenic 30.0%
TTGTACTAAACAACGTATCA+TGG + chr6_3:15673629-15673648 None:intergenic 30.0%
GTTATAGCACTATAATGTAG+AGG - chr6_3:15673677-15673696 Msa0941730:intron 30.0%
TTTCATCAAGCCAATTACTT+TGG + chr6_3:15673988-15674007 None:intergenic 30.0%
!! TGGACTTTTTCTTCTTGAAA+TGG - chr6_3:15672648-15672667 Msa0941730:intron 30.0%
AGGAAAGATTTGAACTTTCT+TGG - chr6_3:15672679-15672698 Msa0941730:intron 30.0%
AGATTTGAACTTTCTTGGTT+TGG - chr6_3:15672684-15672703 Msa0941730:intron 30.0%
! ATTTTTCTTACGTTAACCGT+TGG - chr6_3:15672787-15672806 Msa0941730:intron 30.0%
CAACAGTTTGACATAAAGAA+TGG - chr6_3:15672848-15672867 Msa0941730:intron 30.0%
AGTAGGTTTGAATAAGTGAT+TGG + chr6_3:15673204-15673223 None:intergenic 30.0%
CTTTAGTAATTGATGGAGAA+AGG + chr6_3:15673293-15673312 None:intergenic 30.0%
!! CTATGTTTTCAAGATGAGTA+AGG + chr6_3:15673483-15673502 None:intergenic 30.0%
TTGTACTAAACAACGTATCA+TGG + chr6_3:15673629-15673648 None:intergenic 30.0%
GTTATAGCACTATAATGTAG+AGG - chr6_3:15673677-15673696 Msa0941730:intron 30.0%
TTTCATCAAGCCAATTACTT+TGG + chr6_3:15673988-15674007 None:intergenic 30.0%
!!! CATACCCTTTTGAAATCAAC+TGG - chr6_3:15672434-15672453 Msa0941730:CDS 35.0%
! CAATCTCTTGTGGTTGATAT+TGG - chr6_3:15672481-15672500 Msa0941730:CDS 35.0%
TGAAAAGCTCAAATGTCAAG+AGG + chr6_3:15672618-15672637 None:intergenic 35.0%
! ACATTTGAGCTTTTCATGAC+AGG - chr6_3:15672622-15672641 Msa0941730:intron 35.0%
TTCTTCTTGAAATGGCGAAA+AGG - chr6_3:15672656-15672675 Msa0941730:intron 35.0%
! TGGTTTGGAGATGAATGAAA+AGG - chr6_3:15672699-15672718 Msa0941730:intron 35.0%
! GTTGGTTCTTGTATCAATAC+AGG - chr6_3:15673078-15673097 Msa0941730:CDS 35.0%
TGAATAAGTGATTGGTGCAA+TGG + chr6_3:15673196-15673215 None:intergenic 35.0%
GGTTTATTGAAATCAGGGTT+TGG + chr6_3:15673351-15673370 None:intergenic 35.0%
! AGCATTCTCCATCTATTTTC+AGG + chr6_3:15673372-15673391 None:intergenic 35.0%
GAGATCTTTAATTGAAGCAG+TGG - chr6_3:15673395-15673414 Msa0941730:CDS 35.0%
ATCTTTAATTGAAGCAGTGG+TGG - chr6_3:15673398-15673417 Msa0941730:CDS 35.0%
AAATCATTGCTCGTAGCATT+TGG - chr6_3:15673527-15673546 Msa0941730:intron 35.0%
AATCATTGCTCGTAGCATTT+GGG - chr6_3:15673528-15673547 Msa0941730:intron 35.0%
TTGTCAAATAGCAGCTATAG+TGG - chr6_3:15673578-15673597 Msa0941730:intron 35.0%
!!! CAATTGGCAATACTGGTTTT+CGG - chr6_3:15673731-15673750 Msa0941730:intron 35.0%
TGAGATTCTCAACATTGATC+AGG - chr6_3:15673871-15673890 Msa0941730:intron 35.0%
! ATGAAAACCCATTTGGAGTT+AGG - chr6_3:15674002-15674021 Msa0941730:CDS 35.0%
AATCTGACCTAACTCCAAAT+GGG + chr6_3:15674012-15674031 None:intergenic 35.0%
! ATTTGGAGTTAGGTCAGATT+GGG - chr6_3:15674012-15674031 Msa0941730:CDS 35.0%
!!! CATACCCTTTTGAAATCAAC+TGG - chr6_3:15672434-15672453 Msa0941730:CDS 35.0%
! CAATCTCTTGTGGTTGATAT+TGG - chr6_3:15672481-15672500 Msa0941730:CDS 35.0%
TGAAAAGCTCAAATGTCAAG+AGG + chr6_3:15672618-15672637 None:intergenic 35.0%
! ACATTTGAGCTTTTCATGAC+AGG - chr6_3:15672622-15672641 Msa0941730:intron 35.0%
TTCTTCTTGAAATGGCGAAA+AGG - chr6_3:15672656-15672675 Msa0941730:intron 35.0%
! TGGTTTGGAGATGAATGAAA+AGG - chr6_3:15672699-15672718 Msa0941730:intron 35.0%
! GTTGGTTCTTGTATCAATAC+AGG - chr6_3:15673078-15673097 Msa0941730:CDS 35.0%
TGAATAAGTGATTGGTGCAA+TGG + chr6_3:15673196-15673215 None:intergenic 35.0%
GGTTTATTGAAATCAGGGTT+TGG + chr6_3:15673351-15673370 None:intergenic 35.0%
! AGCATTCTCCATCTATTTTC+AGG + chr6_3:15673372-15673391 None:intergenic 35.0%
GAGATCTTTAATTGAAGCAG+TGG - chr6_3:15673395-15673414 Msa0941730:CDS 35.0%
ATCTTTAATTGAAGCAGTGG+TGG - chr6_3:15673398-15673417 Msa0941730:CDS 35.0%
AAATCATTGCTCGTAGCATT+TGG - chr6_3:15673527-15673546 Msa0941730:intron 35.0%
AATCATTGCTCGTAGCATTT+GGG - chr6_3:15673528-15673547 Msa0941730:intron 35.0%
TTGTCAAATAGCAGCTATAG+TGG - chr6_3:15673578-15673597 Msa0941730:intron 35.0%
!!! CAATTGGCAATACTGGTTTT+CGG - chr6_3:15673731-15673750 Msa0941730:intron 35.0%
TGAGATTCTCAACATTGATC+AGG - chr6_3:15673871-15673890 Msa0941730:intron 35.0%
! ATGAAAACCCATTTGGAGTT+AGG - chr6_3:15674002-15674021 Msa0941730:CDS 35.0%
AATCTGACCTAACTCCAAAT+GGG + chr6_3:15674012-15674031 None:intergenic 35.0%
! ATTTGGAGTTAGGTCAGATT+GGG - chr6_3:15674012-15674031 Msa0941730:CDS 35.0%
! CTTGTGGTTGATATTGGAAG+TGG - chr6_3:15672487-15672506 Msa0941730:CDS 40.0%
CAAGAGGAACATGTAACCTA+AGG + chr6_3:15672602-15672621 None:intergenic 40.0%
TTCTTGAAATGGCGAAAAGG+AGG - chr6_3:15672659-15672678 Msa0941730:intron 40.0%
AGCAAAAAAGGCTAGGAACA+AGG + chr6_3:15672748-15672767 None:intergenic 40.0%
TCAATCGTTTCTTCTTACCC+TGG - chr6_3:15673052-15673071 Msa0941730:CDS 40.0%
ATACAAGAACCAACTCTCCA+GGG + chr6_3:15673072-15673091 None:intergenic 40.0%
ATAAGTGATTGGTGCAATGG+TGG + chr6_3:15673193-15673212 None:intergenic 40.0%
ATCATTGCTCGTAGCATTTG+GGG - chr6_3:15673529-15673548 Msa0941730:intron 40.0%
ACGATCTCAATTGGCAATAC+TGG - chr6_3:15673724-15673743 Msa0941730:intron 40.0%
! GGTCTTTTTGCAATCTGATG+TGG - chr6_3:15673892-15673911 Msa0941730:intron 40.0%
! TTGCAAGGGTAAGCTTGTTT+CGG - chr6_3:15673955-15673974 Msa0941730:intron 40.0%
TGGCTTGATGAAAACCCATT+TGG - chr6_3:15673995-15674014 Msa0941730:CDS 40.0%
CAATCTGACCTAACTCCAAA+TGG + chr6_3:15674013-15674032 None:intergenic 40.0%
! CATTTGGAGTTAGGTCAGAT+TGG - chr6_3:15674011-15674030 Msa0941730:CDS 40.0%
! CTTGTGGTTGATATTGGAAG+TGG - chr6_3:15672487-15672506 Msa0941730:CDS 40.0%
CAAGAGGAACATGTAACCTA+AGG + chr6_3:15672602-15672621 None:intergenic 40.0%
TTCTTGAAATGGCGAAAAGG+AGG - chr6_3:15672659-15672678 Msa0941730:intron 40.0%
AGCAAAAAAGGCTAGGAACA+AGG + chr6_3:15672748-15672767 None:intergenic 40.0%
TCAATCGTTTCTTCTTACCC+TGG - chr6_3:15673052-15673071 Msa0941730:CDS 40.0%
ATACAAGAACCAACTCTCCA+GGG + chr6_3:15673072-15673091 None:intergenic 40.0%
ATAAGTGATTGGTGCAATGG+TGG + chr6_3:15673193-15673212 None:intergenic 40.0%
ATCATTGCTCGTAGCATTTG+GGG - chr6_3:15673529-15673548 Msa0941730:intron 40.0%
ACGATCTCAATTGGCAATAC+TGG - chr6_3:15673724-15673743 Msa0941730:intron 40.0%
! GGTCTTTTTGCAATCTGATG+TGG - chr6_3:15673892-15673911 Msa0941730:intron 40.0%
! TTGCAAGGGTAAGCTTGTTT+CGG - chr6_3:15673955-15673974 Msa0941730:intron 40.0%
TGGCTTGATGAAAACCCATT+TGG - chr6_3:15673995-15674014 Msa0941730:CDS 40.0%
CAATCTGACCTAACTCCAAA+TGG + chr6_3:15674013-15674032 None:intergenic 40.0%
! CATTTGGAGTTAGGTCAGAT+TGG - chr6_3:15674011-15674030 Msa0941730:CDS 40.0%
TGACGCAACTCAATCTCTTG+TGG - chr6_3:15672471-15672490 Msa0941730:CDS 45.0%
! GAGCTTTTCATGACAGGCAA+TGG - chr6_3:15672628-15672647 Msa0941730:intron 45.0%
GGCAGGTGATGTAACAAGTA+TGG + chr6_3:15672727-15672746 None:intergenic 45.0%
AAAAAGGCTAGGAACAAGGC+AGG + chr6_3:15672744-15672763 None:intergenic 45.0%
AGTGAAGAGGGCAGCAAAAA+AGG + chr6_3:15672760-15672779 None:intergenic 45.0%
!!! TTAGCTTGTTTTGCGCTGTC+TGG - chr6_3:15672817-15672836 Msa0941730:intron 45.0%
TTCTTCTTACCCTGGAGAGT+TGG - chr6_3:15673060-15673079 Msa0941730:CDS 45.0%
GATACAAGAACCAACTCTCC+AGG + chr6_3:15673073-15673092 None:intergenic 45.0%
CGTATACATGGCAGCACTAA+TGG + chr6_3:15673152-15673171 None:intergenic 45.0%
CATCAACGGAGACGTATACA+TGG + chr6_3:15673164-15673183 None:intergenic 45.0%
AATGGTGGCAGTGACATCAA+CGG + chr6_3:15673178-15673197 None:intergenic 45.0%
TCTTCTAGCATCTGGTGGAA+AGG - chr6_3:15673422-15673441 Msa0941730:CDS 45.0%
! GGTAAGCTTGTTTCGGAGAA+TGG - chr6_3:15673962-15673981 Msa0941730:intron 45.0%
CGGAGAATGGCCAAAGTAAT+TGG - chr6_3:15673975-15673994 Msa0941730:intron 45.0%
TGACGCAACTCAATCTCTTG+TGG - chr6_3:15672471-15672490 Msa0941730:CDS 45.0%
! GAGCTTTTCATGACAGGCAA+TGG - chr6_3:15672628-15672647 Msa0941730:intron 45.0%
GGCAGGTGATGTAACAAGTA+TGG + chr6_3:15672727-15672746 None:intergenic 45.0%
AAAAAGGCTAGGAACAAGGC+AGG + chr6_3:15672744-15672763 None:intergenic 45.0%
AGTGAAGAGGGCAGCAAAAA+AGG + chr6_3:15672760-15672779 None:intergenic 45.0%
!!! TTAGCTTGTTTTGCGCTGTC+TGG - chr6_3:15672817-15672836 Msa0941730:intron 45.0%
TTCTTCTTACCCTGGAGAGT+TGG - chr6_3:15673060-15673079 Msa0941730:CDS 45.0%
GATACAAGAACCAACTCTCC+AGG + chr6_3:15673073-15673092 None:intergenic 45.0%
CGTATACATGGCAGCACTAA+TGG + chr6_3:15673152-15673171 None:intergenic 45.0%
CATCAACGGAGACGTATACA+TGG + chr6_3:15673164-15673183 None:intergenic 45.0%
AATGGTGGCAGTGACATCAA+CGG + chr6_3:15673178-15673197 None:intergenic 45.0%
TCTTCTAGCATCTGGTGGAA+AGG - chr6_3:15673422-15673441 Msa0941730:CDS 45.0%
! GGTAAGCTTGTTTCGGAGAA+TGG - chr6_3:15673962-15673981 Msa0941730:intron 45.0%
CGGAGAATGGCCAAAGTAAT+TGG - chr6_3:15673975-15673994 Msa0941730:intron 45.0%
AGAGGGCAGCAAAAAAGGCT+AGG + chr6_3:15672755-15672774 None:intergenic 50.0%
!! GTGGTGGATCTTCTAGCATC+TGG - chr6_3:15673414-15673433 Msa0941730:CDS 50.0%
GTGGATCTTCTAGCATCTGG+TGG - chr6_3:15673417-15673436 Msa0941730:CDS 50.0%
AGAGGGCAGCAAAAAAGGCT+AGG + chr6_3:15672755-15672774 None:intergenic 50.0%
!! GTGGTGGATCTTCTAGCATC+TGG - chr6_3:15673414-15673433 Msa0941730:CDS 50.0%
GTGGATCTTCTAGCATCTGG+TGG - chr6_3:15673417-15673436 Msa0941730:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 15672433 15674054 15672433 ID=Msa0941730;Name=Msa0941730
chr6_3 mRNA 15672433 15674054 15672433 ID=Msa0941730-mRNA-1;Parent=Msa0941730;Name=Msa0941730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.8|0.66|0.83|0.8|0.83|6|0|196
chr6_3 exon 15672433 15672594 15672433 ID=Msa0941730-mRNA-1:exon:4783;Parent=Msa0941730-mRNA-1
chr6_3 exon 15673044 15673142 15673044 ID=Msa0941730-mRNA-1:exon:4782;Parent=Msa0941730-mRNA-1
chr6_3 exon 15673388 15673472 15673388 ID=Msa0941730-mRNA-1:exon:4781;Parent=Msa0941730-mRNA-1
chr6_3 exon 15673617 15673666 15673617 ID=Msa0941730-mRNA-1:exon:4780;Parent=Msa0941730-mRNA-1
chr6_3 exon 15673767 15673882 15673767 ID=Msa0941730-mRNA-1:exon:4779;Parent=Msa0941730-mRNA-1
chr6_3 exon 15673979 15674054 15673979 ID=Msa0941730-mRNA-1:exon:4778;Parent=Msa0941730-mRNA-1
chr6_3 CDS 15673979 15674054 15673979 ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1
chr6_3 CDS 15673767 15673882 15673767 ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1
chr6_3 CDS 15673617 15673666 15673617 ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1
chr6_3 CDS 15673388 15673472 15673388 ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1
chr6_3 CDS 15673044 15673142 15673044 ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1
chr6_3 CDS 15672433 15672594 15672433 ID=Msa0941730-mRNA-1:cds;Parent=Msa0941730-mRNA-1
Gene Sequence

>Msa0941730

GCATACCCTTTTGAAATCAACTGGAATAATGTTTACTCTGACGCAACTCAATCTCTTGTGGTTGATATTGGAAGTGGTTACATGTTCCTCTTGACATTTGAGCTTTTCATGACAGGCAATGGACTTTTTCTTCTTGAAATGGCGAAAAGGAGGAAAGATTTGAACTTTCTTGGTTTGGAGATGAATGAAAAGCTTGTTTTGCGCTGTCTGGATTCTGTTCAACAGTTTGACATAAAGAATGGGCACTTCATTGCTACTAATGCAACATCAACATTTCGTTCAATCGTTTCTTCTTACCCTGGAGAGTTGGTTCTTGTATCAATACAGTGTCCAAACCCTGATTTCAATAAACCTGAAAATAGATGGAGAATGCTGCAGAGATCTTTAATTGAAGCAGTGGTGGATCTTCTAGCATCTGGTGGAAAGGTCTTTTTGCAATCTGATGTGGAAGAAGTAGCAATAAGAATGAAAGAACAATTTTTGAGATATTGCAAGGGTAAGCTTGTTTCGGAGAATGGCCAAAGTAATTGGCTTGATGAAAACCCATTTGGAGTTAGGTCAGATTGGGAAAAACATGTTTTAGAGCGC

Protein sequence

>Msa0941730

AYPFEINWNNVYSDATQSLVVDIGSGYMFLLTFELFMTGNGLFLLEMAKRRKDLNFLGLEMNEKLVLRCLDSVQQFDIKNGHFIATNATSTFRSIVSSYPGELVLVSIQCPNPDFNKPENRWRMLQRSLIEAVVDLLASGGKVFLQSDVEEVAIRMKEQFLRYCKGKLVSENGQSNWLDENPFGVRSDWEKHVLER