AlfalfaGEDB | Msa1085920

M. sativa cultivar zhongmu-4 / Msa1085920

KEGG: K10843
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896
PFAM: PF13625.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085920	XP_013447071.1	99.087	767	7	0	1	767	1	767	0.0	1591

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085920	sp\|Q38861\|XPB1_ARATH	85.547	768	105	5	1	764	1	766	0.0	1308

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085920	A0A072TW37	99.087	767	7	0	1	767	1	767	0.0	1591

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1085920	-0.803292	3.737902e-49	-8.615850e-47
Msa0011720	Msa1085920	0.803517	3.356781e-49	-8.615850e-47
Msa0012040	Msa1085920	0.825614	4.257615e-54	-8.615850e-47
Msa0014710	Msa1085920	0.802012	6.866056e-49	-8.615850e-47
Msa0037880	Msa1085920	0.800597	1.337377e-48	-8.615850e-47
Msa0039420	Msa1085920	-0.805120	1.555807e-49	-8.615850e-47
Msa0069260	Msa1085920	0.811658	6.270167e-51	-8.615850e-47
Msa0069310	Msa1085920	0.814140	1.792409e-51	-8.615850e-47
Msa0087000	Msa1085920	0.812177	4.833449e-51	-8.615850e-47
Msa0092990	Msa1085920	0.819609	1.061489e-52	-8.615850e-47

Showing 1 to 10 of 260 entries

Previous1 2 3 4 5…26Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085920	MtrunA17_Chr8g0387201	99.087	767	7	0	1	767	1	767	0.0	1591

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1085920	AT5G41370.1	85.547	768	105	5	1	764	1	766	1308
Msa1085920	AT5G41360.1	84.252	762	116	3	6	764	5	765	1295
Msa1085920	AT5G41360.2	83.574	761	118	4	6	763	5	761	1275

Showing 1 to 3 of 3 entries

Previous1Next

Find 178 sgRNAs with CRISPR-Local

Find 583 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGCTCGTCGTTCTCA+AGG	0.533168	7_2:+86934100	Msa1085920:CDS
AAACCCTCGTGTGATTAAAA+AGG	0.329957	7_2:+86934428	Msa1085920:exon
AAAGCACTAGGTGAGATTGA+AGG	0.606763	7_2:+86927691	Msa1085920:CDS
AACACCAACTAGGGACTTTC+CGG	0.270811	7_2:-86930237	None:intergenic
AACAGTATTTACGTCTTTGC+TGG	0.343453	7_2:-86931567	None:intergenic
AACATCAACCCTGTGTGGTG+AGG	0.619584	7_2:-86934607	None:intergenic
AACGACATATTTGTTCATCT+CGG	0.550470	7_2:-86930358	None:intergenic
AAGAAATAAGAAACAGAGAA+TGG	0.440448	7_2:+86930492	Msa1085920:CDS
AAGAGCCTTAGTAAAATGTT+TGG	0.369614	7_2:+86929801	Msa1085920:CDS
AAGCGGGATCCTTCATCAGA+TGG	0.620834	7_2:-86933895	None:intergenic

Showing 1 to 10 of 178 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTCTTATACATCGAAATCAT+GGG	+	chr7_2:86926121-86926140	Msa1085920:exon	30.0%
TAGCAAATTAGAGTTGAAAC+CGG	+	chr7_2:86926535-86926554	Msa1085920:CDS	30.0%
CATGATTCTACTGCAAATTA+TGG	+	chr7_2:86926900-86926919	Msa1085920:CDS	30.0%
TAAGAAGAATCGTTACTATG+TGG	+	chr7_2:86926941-86926960	Msa1085920:CDS	30.0%
AATAATTACCCCACAAACAA+TGG	-	chr7_2:86927147-86927166	None:intergenic	30.0%
AAACCCACCAAGAATAAATA+AGG	-	chr7_2:86927242-86927261	None:intergenic	30.0%
AATACAACATGGAATCTCTT+AGG	-	chr7_2:86927466-86927485	None:intergenic	30.0%
ACTAAAAAAGTTAGCGGTAA+AGG	-	chr7_2:86927513-86927532	None:intergenic	30.0%
AACCACACTAAAAAAGTTAG+CGG	-	chr7_2:86927519-86927538	None:intergenic	30.0%
ACTACCATGAATATTGTAGT+CGG	+	chr7_2:86927558-86927577	Msa1085920:intron	30.0%

Showing 1 to 10 of 583 entries

Previous1 2 3 4 5…59Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	86926045	86934814	86926045	ID=Msa1085920;Name=Msa1085920
chr7_2	mRNA	86926045	86934814	86926045	ID=Msa1085920-mRNA-1;Parent=Msa1085920;Name=Msa1085920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=94\|1\|1\|1\|1\|1\|20\|385\|767
chr7_2	exon	86926045	86926148	86926045	ID=Msa1085920-mRNA-1:exon:23638;Parent=Msa1085920-mRNA-1
chr7_2	exon	86926235	86926284	86926235	ID=Msa1085920-mRNA-1:exon:23639;Parent=Msa1085920-mRNA-1
chr7_2	exon	86926364	86926436	86926364	ID=Msa1085920-mRNA-1:exon:23640;Parent=Msa1085920-mRNA-1
chr7_2	exon	86926516	86926675	86926516	ID=Msa1085920-mRNA-1:exon:23641;Parent=Msa1085920-mRNA-1
chr7_2	exon	86926758	86926980	86926758	ID=Msa1085920-mRNA-1:exon:23642;Parent=Msa1085920-mRNA-1
chr7_2	exon	86927073	86927129	86927073	ID=Msa1085920-mRNA-1:exon:23643;Parent=Msa1085920-mRNA-1
chr7_2	exon	86927661	86927801	86927661	ID=Msa1085920-mRNA-1:exon:23644;Parent=Msa1085920-mRNA-1
chr7_2	exon	86928976	86929056	86928976	ID=Msa1085920-mRNA-1:exon:23645;Parent=Msa1085920-mRNA-1
chr7_2	exon	86929741	86929828	86929741	ID=Msa1085920-mRNA-1:exon:23646;Parent=Msa1085920-mRNA-1
chr7_2	exon	86930198	86930535	86930198	ID=Msa1085920-mRNA-1:exon:23647;Parent=Msa1085920-mRNA-1
chr7_2	exon	86930627	86930702	86930627	ID=Msa1085920-mRNA-1:exon:23648;Parent=Msa1085920-mRNA-1
chr7_2	exon	86930787	86930980	86930787	ID=Msa1085920-mRNA-1:exon:23649;Parent=Msa1085920-mRNA-1
chr7_2	exon	86931278	86931441	86931278	ID=Msa1085920-mRNA-1:exon:23650;Parent=Msa1085920-mRNA-1
chr7_2	exon	86931529	86931601	86931529	ID=Msa1085920-mRNA-1:exon:23651;Parent=Msa1085920-mRNA-1
chr7_2	exon	86931921	86932034	86931921	ID=Msa1085920-mRNA-1:exon:23652;Parent=Msa1085920-mRNA-1
chr7_2	exon	86932295	86932375	86932295	ID=Msa1085920-mRNA-1:exon:23653;Parent=Msa1085920-mRNA-1
chr7_2	exon	86932503	86932562	86932503	ID=Msa1085920-mRNA-1:exon:23654;Parent=Msa1085920-mRNA-1
chr7_2	exon	86933877	86933960	86933877	ID=Msa1085920-mRNA-1:exon:23655;Parent=Msa1085920-mRNA-1
chr7_2	exon	86934031	86934173	86934031	ID=Msa1085920-mRNA-1:exon:23656;Parent=Msa1085920-mRNA-1
chr7_2	exon	86934336	86934814	86934336	ID=Msa1085920-mRNA-1:exon:23657;Parent=Msa1085920-mRNA-1
chr7_2	five_prime_UTR	86926045	86926138	86926045	ID=Msa1085920-mRNA-1:five_prime_utr;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86926139	86926148	86926139	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86926235	86926284	86926235	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86926364	86926436	86926364	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86926516	86926675	86926516	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86926758	86926980	86926758	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86927073	86927129	86927073	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86927661	86927801	86927661	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86928976	86929056	86928976	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86929741	86929828	86929741	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86930198	86930535	86930198	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86930627	86930702	86930627	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86930787	86930980	86930787	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86931278	86931441	86931278	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86931529	86931601	86931529	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86931921	86932034	86931921	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86932295	86932375	86932295	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86932503	86932562	86932503	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86933877	86933960	86933877	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86934031	86934173	86934031	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	CDS	86934336	86934429	86934336	ID=Msa1085920-mRNA-1:cds;Parent=Msa1085920-mRNA-1
chr7_2	three_prime_UTR	86934430	86934814	86934430	ID=Msa1085920-mRNA-1:three_prime_utr;Parent=Msa1085920-mRNA-1

Gene Sequence

>Msa1085920

ATGGGACACGGTGCTGAAAAAGGAAGACCCTTCAAAAAGCTCAAAGCCGCTGCTAAATTCGAAGATTCCAAAAAAGGATTCGCCGATGATGATGATGATACTTATGGTGCCGATGATGCTTACGATGACGACGAAGGAAAAACAAAGGATTTTAGCAAATTAGAGTTGAAACCGGATCACACAAATCGTCCTCTTTGGGCTTGTGACAATGGCCGCATTTTCCTTGAGACTTTCTCACCTTTGTACAAACAAGCTTATGATTTTCTCATTGCCATCGCCGAGCCCGTTTGCAGGCCAGAGTCGATGCACGAATACAATCTTACACCGCATTCGCTGTATGCTGCGGTTTCGGTTGGTCTAGAAACTGAAACAATTATAGCAGTTTTGAATAAGTTGTCTAAGACCAAGCTTCCTAAAGAGATGATTAGGTTTATCCATGATTCTACTGCAAATTATGGGAAAGTCAAACTCGTTCTTAAGAAGAATCGTTACTATGTGGAATCTCCGTTTCCAGAGGTATTGAAGACATTGCTCAGGGATGATGCTATATCGCGAGCAAGGATCACTTCTGAGGGTACTCATGGAGATGGATTTACAATCAGCAAAGCACTAGGTGAGATTGAAGGCACTCATGACGAGTTGCTAAATCAAGCAGAAGTAGCGGCTGCTGCAGAAGAGAAAGAAGCTCATGCATTCGAAATTGATCCTGCTCAGGTTGAAAATGTAAAGCAACGTTGTTTGCCAAATGCCTTAAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCAGACCTCGAGATGGAACTAAAGCCCCAAGCACAACCACGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCCGGTATCATAGTTCTACCTTGTGGTGCCGGAAAGTCCCTAGTTGGTGTTTCAGCAGCTTCCCGGATAAAAAAGAGCTGTCTTTGTTTGGCAACAAATGCCGTCTCTGTGGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGAGATGAACAAATATGTCGTTTCACATCTGACAGCAAAGAGAGATTCCGTGGTAACGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGGGGTAAACGGTCTGAAGAATCTGAGAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTGCTTATGGACGAGGTGCACGTGGTTCCTGCCCATATGTTTCGAAAAGTCATTAGCATCACTAAATCTCACTGCAAACTTGGGCTCACAGCTACACTTGTGAGAGAGGATGAACGTATTACAGATCTGAACTTCCTAATTGGTCCCAAACTGTATGAGGCAAATTGGTTGGATCTTGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAATTTTTCGCTGAGTATCTAAAGAAAGAGAACTCCAAGAAGAGACAGGCCCTTTATGTGATGAATCCAAATAAATTCCGAGCATGTGAGTTTCTCATAAATTACCACGAAAGGGCACGTGGTGATAAAATTATAGTGTTTGCTGATAATCTTTTTGCTCTCACCGAGTATGCCATGAAACTTCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAGGCATTCAAAACCAGCAAAGACGTAAATACTGTTTTTCTTTCCAAGGTTGGTGACAACTCAATCGATATTCCTGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCACAGCGTCTGGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGATAGGATGGCTGGTGGCAAAGAGGAGTACAATGCATTTTTTTATTCCCTTGTGTCGACCGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTACAGCTTTAAGGTAATTACAAGCTTGCCTCCATCTGATGAAGGATCCCGCTTGCACTATCATCATCTCGATGATCAACTGGCACTACTCGGAAAGGTATTGAATGCTGGTGATGATGCAGTTGGATTAGAGCAACTAGAAGATGATGCAGATGAAATAGCTCTTAAAAGTGCTCGTCGTTCTCAAGGATCGATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTATGTGGAGTACAGTACTGGGCGTAACAAAGGCCAACAGATCAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACCACTTATTTAGAAAACGATTTGGCTCAACATAA

Protein sequence

>Msa1085920

MGHGAEKGRPFKKLKAAAKFEDSKKGFADDDDDTYGADDAYDDDEGKTKDFSKLELKPDHTNRPLWACDNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIRFIHDSTANYGKVKLVLKKNRYYVESPFPEVLKTLLRDDAISRARITSEGTHGDGFTISKALGEIEGTHDELLNQAEVAAAAEEKEAHAFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLEMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLHYHHLDDQLALLGKVLNAGDDAVGLEQLEDDADEIALKSARRSQGSMSAMSGAKGMVYVEYSTGRNKGQQIKSKPKDPAKRHHLFRKRFGST*