AlfalfaGEDB | Msa0301060

M. sativa cultivar zhongmu-4 / Msa0301060

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
PFAM: PF01301.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301060	XP_003597217.1	97.359	833	22	0	1	833	1	833	0.0	1687

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301060	sp\|Q9SCV4\|BGAL8_ARATH	73.123	826	205	7	21	833	31	852	0.0	1255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035090	Msa0301060	0.804981	1.664176e-49	-8.615850e-47
Msa0046860	Msa0301060	0.822038	2.932929e-53	-8.615850e-47
Msa0089410	Msa0301060	0.858491	7.945097e-63	-8.615850e-47
Msa0094060	Msa0301060	0.802594	5.210458e-49	-8.615850e-47
Msa0119630	Msa0301060	0.804170	2.456073e-49	-8.615850e-47
Msa0130120	Msa0301060	0.802272	6.070850e-49	-8.615850e-47
Msa0136520	Msa0301060	0.851531	8.353325e-61	-8.615850e-47
Msa0143360	Msa0301060	0.859960	2.881041e-63	-8.615850e-47
Msa0187560	Msa0301060	0.819845	9.375766e-53	-8.615850e-47
Msa0187820	Msa0301060	0.824226	9.051138e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0301060	MtrunA17_Chr2g0326481	97.359	833	22	0	1	833	1	833	1687
Msa0301060	MtrunA17_Chr4g0029301	79.405	840	163	4	1	832	1	838	1383
Msa0301060	MtrunA17_Chr2g0326451	88.889	522	54	1	316	833	23	544	951
Msa0301060	MtrunA17_Chr8g0342001	55.359	849	347	12	3	832	2	837	947
Msa0301060	MtrunA17_Chr8g0372421	55.900	839	340	14	10	832	16	840	942
Msa0301060	MtrunA17_Chr5g0404841	54.971	855	346	15	1	833	1	838	932
Msa0301060	MtrunA17_Chr2g0330291	55.971	829	333	12	21	832	27	840	927
Msa0301060	MtrunA17_Chr2g0326491	84.556	518	35	2	1	473	1	518	904
Msa0301060	MtrunA17_Chr8g0378221	52.656	866	352	15	12	832	44	896	889
Msa0301060	MtrunA17_Chr1g0152571	59.803	709	266	7	21	719	30	729	868

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0301060	AT2G28470.1	73.123	826	205	7	21	833	31	852	1255
Msa0301060	AT2G28470.3	73.123	826	205	7	21	833	31	852	1255
Msa0301060	AT2G28470.2	73.123	826	205	7	21	833	25	846	1254
Msa0301060	AT2G28470.4	73.123	826	205	7	21	833	25	846	1254
Msa0301060	AT2G28470.5	75.074	678	155	5	19	686	29	702	1065
Msa0301060	AT3G13750.1	55.701	842	345	11	7	833	19	847	931
Msa0301060	AT4G36360.1	54.479	826	350	12	22	833	33	846	926
Msa0301060	AT2G32810.1	52.571	875	362	13	2	833	13	877	923
Msa0301060	AT4G36360.2	54.479	826	349	13	22	833	33	845	922
Msa0301060	AT2G32810.2	52.619	840	346	12	2	799	13	842	892

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Find 245 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGAGATAAAATTAT+AGG	0.339759	2_3:-56768005	None:intergenic
AAAACCTGTGGAGTACTACG+AGG	0.750349	2_3:-56766926	None:intergenic
AAACCAATGGTTGGTTCTTA+GGG	0.337651	2_3:-56771388	None:intergenic
AAACCTGTGGAGTACTACGA+GGG	0.726385	2_3:-56766925	None:intergenic
AAACGTAGGGTCTTGATTTC+TGG	0.241223	2_3:+56766890	Msa0301060:CDS
AAAGGTGAGGCTTGGGTAAA+TGG	0.261772	2_3:+56771607	Msa0301060:CDS
AAATTGTATGCATCACAAGG+AGG	0.727012	2_3:+56767981	Msa0301060:CDS
AAATTGTGTTGGTTCTGCTT+TGG	0.393207	2_3:+56766804	Msa0301060:CDS
AACACCTGTATCAAGAGATG+TGG	0.640543	2_3:-56768217	None:intergenic
AACACTTACAATGTCTGTGA+TGG	0.608501	2_3:-56771745	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACAAAACAAAAAAGGTTGT+CGG	-	chr2_3:56766523-56766542	None:intergenic	30.0%
TTGTAAGAAGAACAAGAGTA+AGG	-	chr2_3:56766621-56766640	None:intergenic	30.0%
AGAATGAATGAACTTTGGTT+TGG	-	chr2_3:56766709-56766728	None:intergenic	30.0%
AGGAAAGAATGAATGAACTT+TGG	-	chr2_3:56766714-56766733	None:intergenic	30.0%
AAAAAGAAACTCACAAGTGA+AGG	-	chr2_3:56766734-56766753	None:intergenic	30.0%
TCTATGATCATAATCCACAT+TGG	-	chr2_3:56766852-56766871	None:intergenic	30.0%
TTAGATTTCTGAATAAGGTC+TGG	-	chr2_3:56767044-56767063	None:intergenic	30.0%
ATTCAGAAATCTAAAGATGG+AGG	+	chr2_3:56767050-56767069	Msa0301060:CDS	30.0%
ATGTAAGTTCCAGAAAACAT+AGG	-	chr2_3:56767093-56767112	None:intergenic	30.0%
AACTTACATGAACCTGTTAA+AGG	+	chr2_3:56767104-56767123	Msa0301060:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	56766371	56773160	56766371	ID=Msa0301060;Name=Msa0301060
chr2_3	mRNA	56766371	56773160	56766371	ID=Msa0301060-mRNA-1;Parent=Msa0301060;Name=Msa0301060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=399\|1\|1\|1\|0.9\|0.80\|21\|358\|833
chr2_3	exon	56766371	56766398	56766371	ID=Msa0301060-mRNA-1:exon:18220;Parent=Msa0301060-mRNA-1
chr2_3	exon	56766420	56766943	56766420	ID=Msa0301060-mRNA-1:exon:18221;Parent=Msa0301060-mRNA-1
chr2_3	exon	56767035	56767130	56767035	ID=Msa0301060-mRNA-1:exon:18222;Parent=Msa0301060-mRNA-1
chr2_3	exon	56767597	56767709	56767597	ID=Msa0301060-mRNA-1:exon:18223;Parent=Msa0301060-mRNA-1
chr2_3	exon	56767785	56767851	56767785	ID=Msa0301060-mRNA-1:exon:18224;Parent=Msa0301060-mRNA-1
chr2_3	exon	56767930	56768022	56767930	ID=Msa0301060-mRNA-1:exon:18225;Parent=Msa0301060-mRNA-1
chr2_3	exon	56768138	56768281	56768138	ID=Msa0301060-mRNA-1:exon:18226;Parent=Msa0301060-mRNA-1
chr2_3	exon	56768385	56768473	56768385	ID=Msa0301060-mRNA-1:exon:18227;Parent=Msa0301060-mRNA-1
chr2_3	exon	56768619	56768724	56768619	ID=Msa0301060-mRNA-1:exon:18228;Parent=Msa0301060-mRNA-1
chr2_3	exon	56768847	56768934	56768847	ID=Msa0301060-mRNA-1:exon:18229;Parent=Msa0301060-mRNA-1
chr2_3	exon	56769291	56769409	56769291	ID=Msa0301060-mRNA-1:exon:18230;Parent=Msa0301060-mRNA-1
chr2_3	exon	56769626	56769787	56769626	ID=Msa0301060-mRNA-1:exon:18231;Parent=Msa0301060-mRNA-1
chr2_3	exon	56770057	56770247	56770057	ID=Msa0301060-mRNA-1:exon:18232;Parent=Msa0301060-mRNA-1
chr2_3	exon	56770336	56770430	56770336	ID=Msa0301060-mRNA-1:exon:18233;Parent=Msa0301060-mRNA-1
chr2_3	exon	56770872	56770981	56770872	ID=Msa0301060-mRNA-1:exon:18234;Parent=Msa0301060-mRNA-1
chr2_3	exon	56771110	56771226	56771110	ID=Msa0301060-mRNA-1:exon:18235;Parent=Msa0301060-mRNA-1
chr2_3	exon	56771317	56771418	56771317	ID=Msa0301060-mRNA-1:exon:18236;Parent=Msa0301060-mRNA-1
chr2_3	exon	56771547	56771758	56771547	ID=Msa0301060-mRNA-1:exon:18237;Parent=Msa0301060-mRNA-1
chr2_3	exon	56771850	56772186	56771850	ID=Msa0301060-mRNA-1:exon:18238;Parent=Msa0301060-mRNA-1
chr2_3	exon	56772671	56772877	56772671	ID=Msa0301060-mRNA-1:exon:18239;Parent=Msa0301060-mRNA-1
chr2_3	exon	56772902	56773160	56772902	ID=Msa0301060-mRNA-1:exon:18240;Parent=Msa0301060-mRNA-1
chr2_3	five_prime_UTR	56766371	56766398	56766371	ID=Msa0301060-mRNA-1:five_prime_utr;Parent=Msa0301060-mRNA-1
chr2_3	five_prime_UTR	56766420	56766790	56766420	ID=Msa0301060-mRNA-1:five_prime_utr;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56766791	56766943	56766791	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56767035	56767130	56767035	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56767597	56767709	56767597	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56767785	56767851	56767785	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56767930	56768022	56767930	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56768138	56768281	56768138	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56768385	56768473	56768385	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56768619	56768724	56768619	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56768847	56768934	56768847	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56769291	56769409	56769291	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56769626	56769787	56769626	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56770057	56770247	56770057	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56770336	56770430	56770336	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56770872	56770981	56770872	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56771110	56771226	56771110	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56771317	56771418	56771317	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56771547	56771758	56771547	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56771850	56772186	56771850	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	CDS	56772671	56772778	56772671	ID=Msa0301060-mRNA-1:cds;Parent=Msa0301060-mRNA-1
chr2_3	three_prime_UTR	56772779	56772877	56772779	ID=Msa0301060-mRNA-1:three_prime_utr;Parent=Msa0301060-mRNA-1
chr2_3	three_prime_UTR	56772902	56773160	56772902	ID=Msa0301060-mRNA-1:three_prime_utr;Parent=Msa0301060-mRNA-1

Gene Sequence

>Msa0301060

ATGAGAGCCACTGAAATTGTGTTGGTTCTGCTTTGGTTCCTACCAACAATGTTTTGCACCAATGTGGATTATGATCATAGAGCATTGGTCATTGATGGCAAACGTAGGGTCTTGATTTCTGGTTCTATTCACTACCCTCGTAGTACTCCACAGATGTGGCCAGACCTTATTCAGAAATCTAAAGATGGAGGACTTGATGTCATTGAAACCTATGTTTTCTGGAACTTACATGAACCTGTTAAAGGCCAGTATGATTTTGATGGGAGGAAGGATTTAGTGAAATTTGTAAAGGCAGTGGCTGAGGCAGGACTATATGTGCATCTCCGGATCGGTCCATATGCGTGTGCTGAATGGAACTATGGTGGTTTCCCTCTTTGGCTTCACTTCATTCCAGGGATTAAGTTCCGAACTGACAATGAACCATTTAAGGCCGAAATGAAGCGATTCACTGCTAAGATTGTCGATCTCATGAAGCAAGAGAAATTGTATGCATCACAAGGAGGACCTATAATTTTATCTCAGATTGAAAATGAGTATGGAAACGTTGAAAGTCACTATGGTTCTGCTGGTAAATCATACGTCAACTGGGCTGCAAAAATGGCCACATCTCTTGATACAGGTGTTCCTTGGGTCATGTGTCAGCAAGGAGATGCTCCTGATCCAATCATTAATACATGCAATGGATTTTACTGTGATCAATTCACACCAAACTCTAATACAAAGCCGAAAATGTGGACTGAGAATTGGAGTGGATGGTTTCTTTCATTTGGTGGTGCTGTTCCTTTTAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAACGTGGTGGAACATTTCAAAATTACTATATGTACCATGGAGGAACCAACTTTGACCGAAGTACCGGCGGACCTTTTATAGCTACAAGTTATGATTATGATGCACCGATTGATGAGTATGGAATTATTAGGCAGCGAAAGTGGGGTCATCTTAAAGATGTACACAAGGCCATAAAGCTTTGTGAAGAAGCACTAATAGCTACAGATCCCAAGATTTCATCTCTTGGTCAAAACCTAGAGGCGGCAGTTTATAAGACAGGATCTGTATGTGCTGCCTTTCTCGCCAACGTGGACACTAAAAATGATAAAACTGTAAATTTCAGTGGCAATTCATATGACTTGCCTGCATGGTCTGTGAGCATCTTACCAGATTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGTATCTGCAATTTCAAACTTCGTAACTGAAGATATCGGTTCTTTAGAAACTTCTAGTTCAAAATGGAGTTGGATAAACGAACCTGTGGGTATCTCGAAGGATGATATATTGTCTAAAACTGGATTACTTGAGCAAATAAATACCACAGCTGATAGAAGTGACTATTTGTGGTACTCATTAAGCCTTGATCTTGCGGATGATCCTGGTTCTCAAACTGTCCTGCACATTGAATCACTTGGCCATGCCCTTCATGCATTCATAAACGGCAAGCTTGCAGGGAGTCAAGCAGGAAACAGTGACAAAGCTAAGCTTAATGTGGACATCCCGATCGCACTAGTTTCTGGAAAGAACAAAATTGATCTACTGAGTATAACAGTTGGACTTCAGAACTATGGAGCCTTTTTTGACACAGTGGGAGCAGGGATCACCGGTCCCGTGATATTGAAAGGTTTGAAGAATGGCAACAACACTCTTGATCTCTCCTCTCAGAAGTGGACATACCAGATTGGCCTAAAAGGTGAAGATTTAGGTCTGTCTAGTGGAAGTTCCGGAGGGTGGAATTCACAGTCTACTTTCCCTAAGAACCAACCATTGGTTTGGTACAAGACAAACTTTGATGCTCCATCCGGCAGTAATCCAGTTGCGATTGACTTCACGGGAATGGGAAAAGGTGAGGCTTGGGTAAATGGACAAAGCATTGGGCGGTACTGGCCTACATATGTCGCTTCAAATGCCGGTTGCACAGACTCATGCAACTATAGAGGACCTTATACTTCCTCCAAATGTCGCAAGAATTGTGGAAAACCATCACAGACATTATACCATGTACCACGATCGTTTTTGAAACCAAACGGCAACACTCTTGTATTGTTTGAGGAAAATGGAGGCGATCCAACACAAATATCTTTTGCTACAAAACAGCTAGAAAGTGTGTGTTCACATGTATCTGATTCTCACCCACCTCAAATAGACTTGTGGAACCATGATACAGCATCAGGGGGAAAAGTAGGGCCTGCACTGTTACTCAACTGTCCTAATCATAATCAGGTAATCTCTTCCATCAAATTTGCAAGCTATGGAACACCACTAGGGACGTGTGGAAACTTCTACCACGGACGCTGCAGCAGCAATAAGGCGCTGTCAATTGTAAAGAAGGCCTGCATTGGATCAAGAAGTTGTAGTATTGGAGTATCAACTAATACATTTGGAGACCCTTGTAGAGGAGTGCCAAAGAGTTTAGCTGTTGAAGCTACTTGTGCATAG

Protein sequence

>Msa0301060

MRATEIVLVLLWFLPTMFCTNVDYDHRALVIDGKRRVLISGSIHYPRSTPQMWPDLIQKSKDGGLDVIETYVFWNLHEPVKGQYDFDGRKDLVKFVKAVAEAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDLMKQEKLYASQGGPIILSQIENEYGNVESHYGSAGKSYVNWAAKMATSLDTGVPWVMCQQGDAPDPIINTCNGFYCDQFTPNSNTKPKMWTENWSGWFLSFGGAVPFRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRSTGGPFIATSYDYDAPIDEYGIIRQRKWGHLKDVHKAIKLCEEALIATDPKISSLGQNLEAAVYKTGSVCAAFLANVDTKNDKTVNFSGNSYDLPAWSVSILPDCKNVVLNTAKINSVSAISNFVTEDIGSLETSSSKWSWINEPVGISKDDILSKTGLLEQINTTADRSDYLWYSLSLDLADDPGSQTVLHIESLGHALHAFINGKLAGSQAGNSDKAKLNVDIPIALVSGKNKIDLLSITVGLQNYGAFFDTVGAGITGPVILKGLKNGNNTLDLSSQKWTYQIGLKGEDLGLSSGSSGGWNSQSTFPKNQPLVWYKTNFDAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYVASNAGCTDSCNYRGPYTSSKCRKNCGKPSQTLYHVPRSFLKPNGNTLVLFEENGGDPTQISFATKQLESVCSHVSDSHPPQIDLWNHDTASGGKVGPALLLNCPNHNQVISSIKFASYGTPLGTCGNFYHGRCSSNKALSIVKKACIGSRSCSIGVSTNTFGDPCRGVPKSLAVEATCA*