AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1168840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168840 MtrunA17_Chr7g0264181 95.455 220 9 1 1 219 1 220 3.73e-155 428
Msa1168840 MtrunA17_Chr1g0181131 90.278 216 20 1 5 219 4 219 2.10e-145 404
Msa1168840 MtrunA17_Chr2g0326841 81.463 205 37 1 4 207 3 207 1.86e-121 343
Msa1168840 MtrunA17_Chr4g0028871 84.974 193 28 1 13 204 12 204 8.78e-118 333
Msa1168840 MtrunA17_Chr3g0142491 73.333 210 55 1 11 219 12 221 8.75e-114 324
Msa1168840 MtrunA17_Chr1g0177391 69.856 209 60 2 11 218 6 212 5.99e-104 299
Msa1168840 MtrunA17_Chr1g0151201 63.725 204 71 2 12 212 7 210 6.63e-93 271
Msa1168840 MtrunA17_Chr1g0156401 56.897 116 28 2 41 134 1 116 2.10e-33 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168840 AT2G37210.1 83.173 208 34 1 1 207 1 208 6.92e-126 355
Msa1168840 AT3G53450.1 81.731 208 37 1 1 207 1 208 2.55e-123 348
Msa1168840 AT2G37210.2 74.138 232 35 2 1 207 1 232 5.76e-120 340
Msa1168840 AT2G28305.1 80.952 210 38 2 11 219 5 213 7.74e-120 339
Msa1168840 AT5G06300.1 74.752 202 50 1 11 211 6 207 1.17e-108 311
Msa1168840 AT2G28305.3 85.475 179 25 1 11 188 5 183 1.72e-108 310
Msa1168840 AT5G03270.1 81.183 186 34 1 11 195 16 201 1.10e-106 305
Msa1168840 AT5G03270.2 81.215 181 33 1 11 190 16 196 8.77e-103 295
Msa1168840 AT4G35190.1 69.458 203 61 1 7 208 2 204 2.30e-101 293
Msa1168840 AT2G35990.1 69.072 194 59 1 11 203 6 199 2.45e-98 285
Msa1168840 AT4G35190.2 70.984 193 53 2 7 198 2 192 5.78e-95 276
Msa1168840 AT5G11950.1 63.547 203 73 1 11 212 7 209 3.83e-94 274
Msa1168840 AT5G11950.2 63.547 203 73 1 11 212 7 209 3.83e-94 274
Msa1168840 AT5G11950.3 63.547 203 73 1 11 212 7 209 3.83e-94 274
Msa1168840 AT2G28305.2 84.091 132 20 1 11 141 5 136 6.16e-75 223
Msa1168840 AT2G35990.3 67.347 147 47 1 58 203 1 147 1.20e-68 207
Msa1168840 AT2G35990.2 67.347 147 47 1 58 203 1 147 1.20e-68 207
Msa1168840 AT5G11950.4 62.821 156 57 1 58 212 1 156 1.42e-67 205
Msa1168840 AT5G26140.2 52.318 151 50 1 84 212 6 156 2.95e-47 153
Msa1168840 AT5G26140.1 51.095 137 45 1 98 212 1 137 5.77e-40 134
Msa1168840 AT5G26140.3 54.717 106 48 0 107 212 17 122 8.46e-36 123

Find 62 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAACATTGATCTTGTTTA+TGG 0.168735 7_4:+61721257 Msa1168840:CDS
GTCATCGCAACAACGGAAAT+TGG 0.246190 7_4:-61724564 None:intergenic
TAATTTACATAAGAAATTAA+AGG 0.265324 7_4:-61724299 None:intergenic
GACCATATGATATAGAATTT+TGG 0.265482 7_4:+61724219 Msa1168840:three_prime_UTR
TTAACTTATGCAGGTGGATA+TGG 0.277547 7_4:+61723308 Msa1168840:intron
ACTAATCAACATTAAATAAT+AGG 0.279626 7_4:-61724427 None:intergenic
ATTTGTTAGTTGGAATAAAA+AGG 0.292300 7_4:-61720467 None:intergenic
CAATTCATTGCCAAGGTTCA+TGG 0.335336 7_4:-61720588 None:intergenic
GCTTTGTTGCTACTACTCTT+TGG 0.335661 7_4:-61720341 None:intergenic
ATAAGTAATTTAACTTTCAT+AGG 0.351644 7_4:-61724338 None:intergenic
ACAATTATGTGACGAGCATT+TGG 0.366388 7_4:-61723574 None:intergenic
ACTCACGCAATGGTGAAATA+AGG 0.394030 7_4:+61720492 Msa1168840:CDS
GATGGCGGTCGCCATGTCAT+TGG 0.405743 7_4:+61721326 Msa1168840:CDS
GTTGGATTAGTAAATGTTGA+TGG 0.409542 7_4:+61723493 Msa1168840:CDS
CTCCAAAATTCTATATCATA+TGG 0.431525 7_4:-61724221 None:intergenic
ATGGCGGTCGCCATGTCATT+GGG 0.438706 7_4:+61721327 Msa1168840:CDS
ATTGACAAAGCTGTGGAAGA+AGG 0.461566 7_4:+61723541 Msa1168840:CDS
GCGTGAGTCCATTTGTTAGT+TGG 0.464138 7_4:-61720477 None:intergenic
CATGAACCTTGGCAATGAAT+TGG 0.469550 7_4:+61720589 Msa1168840:CDS
TTCCATCTGCCAGCTCAACT+TGG 0.470523 7_4:-61724117 None:intergenic
TTGAGATGTCATAATCTTGA+GGG 0.471297 7_4:-61724154 None:intergenic
GTCATAACATGGGCTCAACT+TGG 0.475221 7_4:+61723353 Msa1168840:CDS
ATTGATCTTGTTTATGGAGG+AGG 0.482065 7_4:+61721263 Msa1168840:CDS
CAAGGTTCATGGCAGCATCT+TGG 0.485744 7_4:-61720577 None:intergenic
AAAAGAGTTAGTTAAGAAGT+TGG 0.487121 7_4:+61723612 Msa1168840:CDS
AAAGATGAGGATGACTCTTA+AGG 0.487617 7_4:-61724469 None:intergenic
AGGAGGAAGCATTGGTCTCA+TGG 0.491447 7_4:+61721280 Msa1168840:CDS
GTTTATGGAGGAGGAAGCAT+TGG 0.504128 7_4:+61721272 Msa1168840:CDS
GTTTCTCAAGCTGTTCATGA+TGG 0.505960 7_4:+61721308 Msa1168840:CDS
GTGTTGCTTCCAAGTTGAGC+TGG 0.509075 7_4:+61724108 Msa1168840:CDS
TGCTAAGTGCTAACCTGGTA+AGG 0.510169 7_4:-61722015 None:intergenic
AGAGTTAGTTAAGAAGTTGG+AGG 0.516344 7_4:+61723615 Msa1168840:CDS
TTGACAAAGCTGTGGAAGAA+GGG 0.531943 7_4:+61723542 Msa1168840:CDS
AACATTGATCTTGTTTATGG+AGG 0.533518 7_4:+61721260 Msa1168840:CDS
CAAGATGCTGCCATGAACCT+TGG 0.535202 7_4:+61720578 Msa1168840:CDS
CTCAAGATTATGACATCTCA+AGG 0.546895 7_4:+61724156 Msa1168840:CDS
GCATCAAAGGAAAGCTGAGA+TGG 0.549979 7_4:+61721968 Msa1168840:CDS
GGAGGAAGCATTGGTCTCAT+GGG 0.550392 7_4:+61721281 Msa1168840:CDS
TACATACCAATTCATTGCCA+AGG 0.561261 7_4:-61720595 None:intergenic
TTCCAAGTTGAGCTGGCAGA+TGG 0.564883 7_4:+61724115 Msa1168840:CDS
CAGCTAACTGGTGAAACAGT+AGG 0.567165 7_4:+61721921 Msa1168840:intron
CTGTTGCTGATATGCATCAA+AGG 0.573128 7_4:+61721955 Msa1168840:CDS
CTTGAGATGTCATAATCTTG+AGG 0.576949 7_4:-61724155 None:intergenic
TAACAAATGGACTCACGCAA+TGG 0.580220 7_4:+61720482 Msa1168840:exon
ACAGTGAAAGACAAAGATGA+AGG 0.582119 7_4:-61720403 None:intergenic
CTATGTTTACTTCACTTGCA+AGG 0.592333 7_4:+61724189 Msa1168840:three_prime_UTR
GAAGCAACACCCTCATGACA+TGG 0.600653 7_4:-61724095 None:intergenic
AACTTCTTGAAGTCATAACA+TGG 0.604120 7_4:+61723342 Msa1168840:CDS
CTTGATCAACACAAAAGATG+AGG 0.611603 7_4:-61724482 None:intergenic
ACTTGGAATTCATGACAAGC+CGG 0.616968 7_4:+61723370 Msa1168840:CDS
GGAGTATGTTCCATGTCATG+AGG 0.617100 7_4:+61724085 Msa1168840:intron
GTTCATGGCAGCATCTTGGT+AGG 0.620771 7_4:-61720573 None:intergenic
TCTCAAGCTGTTCATGATGG+CGG 0.622957 7_4:+61721311 Msa1168840:CDS
TGAAACAGTAGGAGAAGTGA+AGG 0.624185 7_4:+61721932 Msa1168840:CDS
GTCATTCATTGACAAAGCTG+TGG 0.639783 7_4:+61723534 Msa1168840:CDS
GAGTATGTTCCATGTCATGA+GGG 0.646303 7_4:+61724086 Msa1168840:CDS
TGTATTTGTCATCGCAACAA+CGG 0.652612 7_4:-61724571 None:intergenic
TAAAATCAAAGTTTATAACA+AGG 0.654833 7_4:-61724366 None:intergenic
GTGTTATATACCCAATGACA+TGG 0.655296 7_4:-61721337 None:intergenic
AGGTGGATATGGAACTCTAG+AGG 0.671132 7_4:+61723319 Msa1168840:intron
TTTGTCAATGAATGACAACA+AGG 0.686987 7_4:-61723527 None:intergenic
ACTTCTTGAAGTCATAACAT+GGG 0.690032 7_4:+61723343 Msa1168840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATATGAAAATGT+CGG - chr7_4:61722138-61722157 None:intergenic 10.0%
!! TTTAAAAATGAAAGATAAAA+AGG - chr7_4:61722279-61722298 None:intergenic 10.0%
!!! TCCAATATTTTATATTTTAA+GGG - chr7_4:61722634-61722653 None:intergenic 10.0%
!!! AATATTATTTTTTTTGACAA+TGG - chr7_4:61723728-61723747 None:intergenic 10.0%
!! TTAATTAATAAGTATACAAT+TGG - chr7_4:61724009-61724028 None:intergenic 10.0%
!! TAATTTACATAAGAAATTAA+AGG - chr7_4:61724302-61724321 None:intergenic 10.0%
!!! TTAATTTTTTGTTGTTTACT+TGG + chr7_4:61722149-61722168 Msa1168840:intron 15.0%
!!! TTTTAAAACAACATGATTTA+AGG - chr7_4:61722435-61722454 None:intergenic 15.0%
!!! ATTTTATATTTTAAGGGATA+AGG - chr7_4:61722628-61722647 None:intergenic 15.0%
!! TCCCTTAAAATATAAAATAT+TGG + chr7_4:61722630-61722649 Msa1168840:intron 15.0%
!!! GTCCAATATTTTATATTTTA+AGG - chr7_4:61722635-61722654 None:intergenic 15.0%
!! ATACTCAAAATAAATTACTT+AGG - chr7_4:61722908-61722927 None:intergenic 15.0%
!! TTATCATTTATGAATTAATC+TGG + chr7_4:61723449-61723468 Msa1168840:intron 15.0%
!!! AAGATTTGAAATTAATTTAC+AGG + chr7_4:61724064-61724083 Msa1168840:intron 15.0%
!!! ATAAGTAATTTAACTTTCAT+AGG - chr7_4:61724341-61724360 None:intergenic 15.0%
!! TAAAATCAAAGTTTATAACA+AGG - chr7_4:61724369-61724388 None:intergenic 15.0%
!! ACTAATCAACATTAAATAAT+AGG - chr7_4:61724430-61724449 None:intergenic 15.0%
!!! TAGTAGTTTTTATATTTAAC+TGG + chr7_4:61724446-61724465 Msa1168840:three_prime_UTR 15.0%
!!! AAGATTTTAAATTGTTATCA+TGG + chr7_4:61724502-61724521 Msa1168840:three_prime_UTR 15.0%
!! TAATGAAGAAAAAGAAGAAA+AGG - chr7_4:61720382-61720401 None:intergenic 20.0%
!! AATAAAAAGGTAACTAACTA+GGG - chr7_4:61720457-61720476 None:intergenic 20.0%
!!! ATTTGTTAGTTGGAATAAAA+AGG - chr7_4:61720470-61720489 None:intergenic 20.0%
!!! TTTTTATTCCAACTAACAAA+TGG + chr7_4:61720469-61720488 Msa1168840:exon 20.0%
!!! ACACTTTGATTAATGTTTTT+GGG - chr7_4:61720888-61720907 None:intergenic 20.0%
!!! AACACTTTGATTAATGTTTT+TGG - chr7_4:61720889-61720908 None:intergenic 20.0%
!!! TCCATTTTTGTTTCATATTA+AGG + chr7_4:61720925-61720944 Msa1168840:intron 20.0%
!! ACCTTAATATGAAACAAAAA+TGG - chr7_4:61720929-61720948 None:intergenic 20.0%
!! TGTTAATTAATGAGTAAAAG+AGG - chr7_4:61721496-61721515 None:intergenic 20.0%
!!! GTCAACTTTTTCTTATAATA+AGG - chr7_4:61721608-61721627 None:intergenic 20.0%
!!! TAAGAAAAAGTTGACTTTTT+AGG + chr7_4:61721613-61721632 Msa1168840:intron 20.0%
!!! TAAGAAACAATTGACTTTTT+TGG - chr7_4:61721700-61721719 None:intergenic 20.0%
!!! GTCAATTGTTTCTTATAATA+AGG + chr7_4:61721705-61721724 Msa1168840:intron 20.0%
!! TTTAATAACAGAAGGTAAAA+GGG - chr7_4:61721754-61721773 None:intergenic 20.0%
!!! AAAAATGTTGTTTATGTCTT+TGG + chr7_4:61721883-61721902 Msa1168840:intron 20.0%
!!! GAAACAATTGTTTTTTTCAA+AGG - chr7_4:61722114-61722133 None:intergenic 20.0%
!!! TTGTTTTTGTTGATTTGATT+TGG + chr7_4:61722315-61722334 Msa1168840:intron 20.0%
!! TCCAATGTTTATGATTAATA+AGG + chr7_4:61722546-61722565 Msa1168840:intron 20.0%
!! TCCTTATTAATCATAAACAT+TGG - chr7_4:61722550-61722569 None:intergenic 20.0%
!! TTATATACAAATCATTCCTT+GGG - chr7_4:61723017-61723036 None:intergenic 20.0%
!! TTTATATACAAATCATTCCT+TGG - chr7_4:61723018-61723037 None:intergenic 20.0%
!! TACAATTCAGATTATAATCA+TGG + chr7_4:61723246-61723265 Msa1168840:intron 20.0%
! GAATAAAAAGGTAACTAACT+AGG - chr7_4:61720458-61720477 None:intergenic 25.0%
!! AAAAGAATTTGTGTTTTCTG+TGG + chr7_4:61720527-61720546 Msa1168840:CDS 25.0%
! AACTCACTTATTGAAAAATG+TGG - chr7_4:61720689-61720708 None:intergenic 25.0%
!! TTTCAATAAGTGAGTTGAAA+TGG + chr7_4:61720693-61720712 Msa1168840:intron 25.0%
!! AGTGAATTTCAGTTTTTGTA+AGG + chr7_4:61720799-61720818 Msa1168840:intron 25.0%
! AAGGTTATATACTCTGTATT+TGG + chr7_4:61720818-61720837 Msa1168840:intron 25.0%
! TTTGGGCTTAATGTATATAA+TGG - chr7_4:61720871-61720890 None:intergenic 25.0%
!! TTTTCTTTTCTTTCATCACA+TGG + chr7_4:61721116-61721135 Msa1168840:intron 25.0%
!! TTTCTTTTCTTTCATCACAT+GGG + chr7_4:61721117-61721136 Msa1168840:intron 25.0%
! GAAACAAGAAAACCAAATAA+CGG - chr7_4:61721189-61721208 None:intergenic 25.0%
! AGAGAACAAAAATTAACACT+TGG + chr7_4:61721438-61721457 Msa1168840:intron 25.0%
!! CTTTTTCTTATAATAAGGAC+CGG - chr7_4:61721603-61721622 None:intergenic 25.0%
!! TTGTTTCTTATAATAAGGAC+CGG + chr7_4:61721710-61721729 Msa1168840:intron 25.0%
! TTAATAACAGAAGGTAAAAG+GGG - chr7_4:61721753-61721772 None:intergenic 25.0%
! CTTTAATAACAGAAGGTAAA+AGG - chr7_4:61721755-61721774 None:intergenic 25.0%
! TAGTACACTTTAATAACAGA+AGG - chr7_4:61721762-61721781 None:intergenic 25.0%
! TCTAAACATAAGAGAAAATC+AGG - chr7_4:61721854-61721873 None:intergenic 25.0%
! TCAAAGTTATTCATTACTTG+TGG - chr7_4:61722350-61722369 None:intergenic 25.0%
! TAATTCGTAAACAACTTTCA+TGG + chr7_4:61722508-61722527 Msa1168840:intron 25.0%
!!! ATTATCAAGTAAGCTTTGAA+GGG - chr7_4:61722580-61722599 None:intergenic 25.0%
!!! ATATTTTAAGGGATAAGGTA+AGG - chr7_4:61722623-61722642 None:intergenic 25.0%
!! AACAAAAGTAGTGGAAAAAA+TGG - chr7_4:61722710-61722729 None:intergenic 25.0%
! ACTATACTAACTAAATACCA+TGG + chr7_4:61723101-61723120 Msa1168840:intron 25.0%
! TATGATATTGTAGAGAATTG+CGG + chr7_4:61723154-61723173 Msa1168840:intron 25.0%
! TTGTAACATCAATGTTTGTT+AGG - chr7_4:61723231-61723250 None:intergenic 25.0%
! ATTCAGATTATAATCATGGA+TGG + chr7_4:61723250-61723269 Msa1168840:intron 25.0%
!! TTTTCTGAATTAACTTATGC+AGG + chr7_4:61723299-61723318 Msa1168840:intron 25.0%
! AGATATAGATTCCTCAAAAT+TGG - chr7_4:61723411-61723430 None:intergenic 25.0%
! GCTTATAATTACAAACTTGT+AGG + chr7_4:61723471-61723490 Msa1168840:intron 25.0%
! ATAATTACAAACTTGTAGGT+TGG + chr7_4:61723475-61723494 Msa1168840:intron 25.0%
! AAAAGAGTTAGTTAAGAAGT+TGG + chr7_4:61723612-61723631 Msa1168840:CDS 25.0%
!! TACCTATAGTTTTCTTAGTT+AGG - chr7_4:61723653-61723672 None:intergenic 25.0%
!! GACCATATGATATAGAATTT+TGG + chr7_4:61724219-61724238 Msa1168840:three_prime_UTR 25.0%
! CTCCAAAATTCTATATCATA+TGG - chr7_4:61724224-61724243 None:intergenic 25.0%
!! CATATGATATAGAATTTTGG+AGG + chr7_4:61724222-61724241 Msa1168840:three_prime_UTR 25.0%
! TTTTAGTCCGTACAAATGTT+TGG - chr7_4:61720975-61720994 None:intergenic 30.0%
!!! TGATGTTGTTTGTTTTGTGA+AGG + chr7_4:61721229-61721248 Msa1168840:intron 30.0%
!!! TTTGTTTTGTGAAGGTTTCA+AGG + chr7_4:61721237-61721256 Msa1168840:intron 30.0%
! AGGAACATTGATCTTGTTTA+TGG + chr7_4:61721257-61721276 Msa1168840:CDS 30.0%
! AACATTGATCTTGTTTATGG+AGG + chr7_4:61721260-61721279 Msa1168840:CDS 30.0%
TCTCTCAAAGTTGTACTATT+TGG + chr7_4:61721401-61721420 Msa1168840:intron 30.0%
CTCTCAAAGTTGTACTATTT+GGG + chr7_4:61721402-61721421 Msa1168840:intron 30.0%
AAAAGAGGTTAACAAAAGCT+TGG - chr7_4:61721481-61721500 None:intergenic 30.0%
AGGAATCAAACAATGAGATA+TGG - chr7_4:61722094-61722113 None:intergenic 30.0%
ATGAATAACTTTGACTAGTG+TGG + chr7_4:61722356-61722375 Msa1168840:intron 30.0%
! CATTATCAAGTAAGCTTTGA+AGG - chr7_4:61722581-61722600 None:intergenic 30.0%
!! ACTTGCTTCATTTGATAATG+AGG + chr7_4:61722754-61722773 Msa1168840:intron 30.0%
!! CTTGCTTCATTTGATAATGA+GGG + chr7_4:61722755-61722774 Msa1168840:intron 30.0%
AATGAGGGAAAGTAAAGAAA+AGG + chr7_4:61722770-61722789 Msa1168840:intron 30.0%
CAGTAGAAAGGTTATTGAAA+AGG - chr7_4:61722849-61722868 None:intergenic 30.0%
! AGTTTTCAATCACTCTTTCT+TGG + chr7_4:61722969-61722988 Msa1168840:intron 30.0%
! GTTTTCAATCACTCTTTCTT+GGG + chr7_4:61722970-61722989 Msa1168840:intron 30.0%
CCACGATTTAAATAAATCCA+TGG - chr7_4:61723121-61723140 None:intergenic 30.0%
CCATGGATTTATTTAAATCG+TGG + chr7_4:61723118-61723137 Msa1168840:intron 30.0%
AACTTCTTGAAGTCATAACA+TGG + chr7_4:61723342-61723361 Msa1168840:CDS 30.0%
ACTTCTTGAAGTCATAACAT+GGG + chr7_4:61723343-61723362 Msa1168840:CDS 30.0%
TTGGACATGTCAATTATTAC+CGG - chr7_4:61723392-61723411 None:intergenic 30.0%
! AATTGACATGTCCAATTTTG+AGG + chr7_4:61723397-61723416 Msa1168840:intron 30.0%
!! GTTGGATTAGTAAATGTTGA+TGG + chr7_4:61723493-61723512 Msa1168840:CDS 30.0%
TTTGTCAATGAATGACAACA+AGG - chr7_4:61723530-61723549 None:intergenic 30.0%
! TTAACTAACTCTTTTGCAGT+TGG - chr7_4:61723607-61723626 None:intergenic 30.0%
GTCCTAACTAAGAAAACTAT+AGG + chr7_4:61723648-61723667 Msa1168840:intron 30.0%
TTGGATAAACTAGAGGATAT+TGG - chr7_4:61723758-61723777 None:intergenic 30.0%
TTGTGAGAATCAGATTGAAA+AGG - chr7_4:61723824-61723843 None:intergenic 30.0%
CAAAGAAAGTGATTTCACAT+GGG - chr7_4:61723861-61723880 None:intergenic 30.0%
TCAAAGAAAGTGATTTCACA+TGG - chr7_4:61723862-61723881 None:intergenic 30.0%
TTGAGATGTCATAATCTTGA+GGG - chr7_4:61724157-61724176 None:intergenic 30.0%
!! ATGATATAGAATTTTGGAGG+TGG + chr7_4:61724225-61724244 Msa1168840:three_prime_UTR 30.0%
ACAGTGAAAGACAAAGATGA+AGG - chr7_4:61720406-61720425 None:intergenic 35.0%
!!! TGGTAGGTAGTTTTTTTACC+AGG - chr7_4:61720560-61720579 None:intergenic 35.0%
TACATACCAATTCATTGCCA+AGG - chr7_4:61720598-61720617 None:intergenic 35.0%
! GTGAGTTGAAATGGTGTATA+TGG + chr7_4:61720702-61720721 Msa1168840:intron 35.0%
CTCTGAACCAAACATTTGTA+CGG + chr7_4:61720965-61720984 Msa1168840:intron 35.0%
GAAGGTAAAAAGTGAGAAGA+AGG - chr7_4:61721042-61721061 None:intergenic 35.0%
!! CTTTGAAATGCAAACAGTGA+AGG - chr7_4:61721060-61721079 None:intergenic 35.0%
ACAAGAAAACCAAATAACGG+TGG - chr7_4:61721186-61721205 None:intergenic 35.0%
! ATTGATCTTGTTTATGGAGG+AGG + chr7_4:61721263-61721282 Msa1168840:CDS 35.0%
GTGTTATATACCCAATGACA+TGG - chr7_4:61721340-61721359 None:intergenic 35.0%
TTCTTATAATAAGGACCGGA+GGG - chr7_4:61721714-61721733 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG - chr7_4:61721713-61721732 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG + chr7_4:61721713-61721732 Msa1168840:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG + chr7_4:61721714-61721733 Msa1168840:intron 35.0%
CGCTCAAAATTTGATGTATC+TGG + chr7_4:61721788-61721807 Msa1168840:intron 35.0%
!!! TGGTTGCTTTTTAGACAGAA+TGG + chr7_4:61722169-61722188 Msa1168840:intron 35.0%
! CAACTGTTGTTGTGTTTTGT+GGG + chr7_4:61722235-61722254 Msa1168840:intron 35.0%
! AACTGTTGTTGTGTTTTGTG+GGG + chr7_4:61722236-61722255 Msa1168840:intron 35.0%
! GTTTGAAGCAATGAGAAAAG+AGG - chr7_4:61722479-61722498 None:intergenic 35.0%
TTAAGGGATAAGGTAAGGTA+AGG - chr7_4:61722618-61722637 None:intergenic 35.0%
TGTGTCTCTGATCAACTATA+TGG + chr7_4:61722671-61722690 Msa1168840:intron 35.0%
TCTGATCAACTATATGGTTC+AGG + chr7_4:61722677-61722696 Msa1168840:intron 35.0%
CACTGTTCAAACAAAAGTAG+TGG - chr7_4:61722719-61722738 None:intergenic 35.0%
!! CACTACTTTTGTTTGAACAG+TGG + chr7_4:61722717-61722736 Msa1168840:intron 35.0%
GAAAAGGATGAAACAATGTC+AGG - chr7_4:61722833-61722852 None:intergenic 35.0%
AACTAGTACTAGCAGTAGAA+AGG - chr7_4:61722861-61722880 None:intergenic 35.0%
AAAATTAGTGACAGAGAGAG+TGG + chr7_4:61722930-61722949 Msa1168840:intron 35.0%
! TGGGAATCAATTTTCTTAGG+AGG - chr7_4:61722998-61723017 None:intergenic 35.0%
! CCTTGGGAATCAATTTTCTT+AGG - chr7_4:61723001-61723020 None:intergenic 35.0%
! CCTAAGAAAATTGATTCCCA+AGG + chr7_4:61722998-61723017 Msa1168840:intron 35.0%
TCCAAATGTAGCTATGGATA+TGG - chr7_4:61723070-61723089 None:intergenic 35.0%
TTTGTGTCCAAATGTAGCTA+TGG - chr7_4:61723076-61723095 None:intergenic 35.0%
TTATTTAAATCGTGGTCGCA+TGG + chr7_4:61723126-61723145 Msa1168840:intron 35.0%
GTTTGATGTAGCTTCAATTG+TGG + chr7_4:61723185-61723204 Msa1168840:intron 35.0%
TCTGAATTAACTTATGCAGG+TGG + chr7_4:61723302-61723321 Msa1168840:intron 35.0%
TTAACTTATGCAGGTGGATA+TGG + chr7_4:61723308-61723327 Msa1168840:intron 35.0%
ACAATTATGTGACGAGCATT+TGG - chr7_4:61723577-61723596 None:intergenic 35.0%
AGAGTTAGTTAAGAAGTTGG+AGG + chr7_4:61723615-61723634 Msa1168840:CDS 35.0%
GAACTTCTTGGATAAACTAG+AGG - chr7_4:61723765-61723784 None:intergenic 35.0%
CTTGAGATGTCATAATCTTG+AGG - chr7_4:61724158-61724177 None:intergenic 35.0%
CTCAAGATTATGACATCTCA+AGG + chr7_4:61724156-61724175 Msa1168840:CDS 35.0%
CTATGTTTACTTCACTTGCA+AGG + chr7_4:61724189-61724208 Msa1168840:three_prime_UTR 35.0%
AAAGATGAGGATGACTCTTA+AGG - chr7_4:61724472-61724491 None:intergenic 35.0%
CTTGATCAACACAAAAGATG+AGG - chr7_4:61724485-61724504 None:intergenic 35.0%
! GCTTTGTTGCTACTACTCTT+TGG - chr7_4:61720344-61720363 None:intergenic 40.0%
! TAACAAATGGACTCACGCAA+TGG + chr7_4:61720482-61720501 Msa1168840:exon 40.0%
ACTCACGCAATGGTGAAATA+AGG + chr7_4:61720492-61720511 Msa1168840:CDS 40.0%
CAATTCATTGCCAAGGTTCA+TGG - chr7_4:61720591-61720610 None:intergenic 40.0%
CATGAACCTTGGCAATGAAT+TGG + chr7_4:61720589-61720608 Msa1168840:CDS 40.0%
TCATAGTCACCACCGTTATT+TGG + chr7_4:61721174-61721193 Msa1168840:intron 40.0%
GTTTCTCAAGCTGTTCATGA+TGG + chr7_4:61721308-61721327 Msa1168840:CDS 40.0%
TACTAGACAAATACCTCTCG+AGG - chr7_4:61721574-61721593 None:intergenic 40.0%
TATTTGTCTAGTACTCCCTC+CGG + chr7_4:61721581-61721600 Msa1168840:intron 40.0%
! GGTTAAACTTTTACTCCCTC+CGG - chr7_4:61721732-61721751 None:intergenic 40.0%
!!! GATGTCATTTTGCAGCTAAC+TGG + chr7_4:61721909-61721928 Msa1168840:intron 40.0%
TGAAACAGTAGGAGAAGTGA+AGG + chr7_4:61721932-61721951 Msa1168840:CDS 40.0%
CTGTTGCTGATATGCATCAA+AGG + chr7_4:61721955-61721974 Msa1168840:CDS 40.0%
! GATGCTTTTATTGCCTTACC+AGG + chr7_4:61722002-61722021 Msa1168840:CDS 40.0%
CCACAAAACACAACAACAGT+TGG - chr7_4:61722237-61722256 None:intergenic 40.0%
! CCAACTGTTGTTGTGTTTTG+TGG + chr7_4:61722234-61722253 Msa1168840:intron 40.0%
CCTTTCTTGTCCTCAATGAA+TGG - chr7_4:61722383-61722402 None:intergenic 40.0%
CCATTCATTGAGGACAAGAA+AGG + chr7_4:61722380-61722399 Msa1168840:intron 40.0%
GCCATATCCATAGCTACATT+TGG + chr7_4:61723066-61723085 Msa1168840:intron 40.0%
! TGTTTGTTAGGTCTATGCGA+CGG - chr7_4:61723219-61723238 None:intergenic 40.0%
ACTTGGAATTCATGACAAGC+CGG + chr7_4:61723370-61723389 Msa1168840:CDS 40.0%
GTCATTCATTGACAAAGCTG+TGG + chr7_4:61723534-61723553 Msa1168840:CDS 40.0%
ATTGACAAAGCTGTGGAAGA+AGG + chr7_4:61723541-61723560 Msa1168840:CDS 40.0%
TTGACAAAGCTGTGGAAGAA+GGG + chr7_4:61723542-61723561 Msa1168840:CDS 40.0%
AAACACTGGCAAGAACTTCT+TGG - chr7_4:61723777-61723796 None:intergenic 40.0%
AAGTTCTTGCCAGTGTTTGT+TGG + chr7_4:61723779-61723798 Msa1168840:intron 40.0%
GTAATAGTGCCAACAAACAC+TGG - chr7_4:61723791-61723810 None:intergenic 40.0%
GAGTATGTTCCATGTCATGA+GGG + chr7_4:61724086-61724105 Msa1168840:CDS 40.0%
! GCGTGAGTCCATTTGTTAGT+TGG - chr7_4:61720480-61720499 None:intergenic 45.0%
! GTTTTCTGTGGAAGTAGTCC+TGG + chr7_4:61720539-61720558 Msa1168840:CDS 45.0%
! GTTTATGGAGGAGGAAGCAT+TGG + chr7_4:61721272-61721291 Msa1168840:CDS 45.0%
TCTCAAGCTGTTCATGATGG+CGG + chr7_4:61721311-61721330 Msa1168840:CDS 45.0%
CAGCTAACTGGTGAAACAGT+AGG + chr7_4:61721921-61721940 Msa1168840:intron 45.0%
GCATCAAAGGAAAGCTGAGA+TGG + chr7_4:61721968-61721987 Msa1168840:CDS 45.0%
TGCTAAGTGCTAACCTGGTA+AGG - chr7_4:61722018-61722037 None:intergenic 45.0%
TTGCATGCTAAGTGCTAACC+TGG - chr7_4:61722023-61722042 None:intergenic 45.0%
CTAGTGTGGTCCATTCATTG+AGG + chr7_4:61722370-61722389 Msa1168840:intron 45.0%
GATGAAACAATGTCAGGTGC+AGG - chr7_4:61722827-61722846 None:intergenic 45.0%
ATTAGTGACAGAGAGAGTGG+AGG + chr7_4:61722933-61722952 Msa1168840:intron 45.0%
TATGGATATGGCAGTGTCAG+GGG - chr7_4:61723058-61723077 None:intergenic 45.0%
CTATGGATATGGCAGTGTCA+GGG - chr7_4:61723059-61723078 None:intergenic 45.0%
TTTAAATCGTGGTCGCATGG+CGG + chr7_4:61723129-61723148 Msa1168840:intron 45.0%
AGGTGGATATGGAACTCTAG+AGG + chr7_4:61723319-61723338 Msa1168840:intron 45.0%
GTCATAACATGGGCTCAACT+TGG + chr7_4:61723353-61723372 Msa1168840:CDS 45.0%
GGAGTATGTTCCATGTCATG+AGG + chr7_4:61724085-61724104 Msa1168840:intron 45.0%
GTCATCGCAACAACGGAAAT+TGG - chr7_4:61724567-61724586 None:intergenic 45.0%
GTTCATGGCAGCATCTTGGT+AGG - chr7_4:61720576-61720595 None:intergenic 50.0%
CAAGGTTCATGGCAGCATCT+TGG - chr7_4:61720580-61720599 None:intergenic 50.0%
CAAGATGCTGCCATGAACCT+TGG + chr7_4:61720578-61720597 Msa1168840:CDS 50.0%
!! AGGAGGAAGCATTGGTCTCA+TGG + chr7_4:61721280-61721299 Msa1168840:CDS 50.0%
!! GGAGGAAGCATTGGTCTCAT+GGG + chr7_4:61721281-61721300 Msa1168840:CDS 50.0%
TCTCGAGGCATGAGTGTCTT+GGG - chr7_4:61721559-61721578 None:intergenic 50.0%
TGTCAGGTGCAGGTGCTAAT+TGG - chr7_4:61722817-61722836 None:intergenic 50.0%
ATATGGCAGTGTCAGGGGAA+AGG - chr7_4:61723053-61723072 None:intergenic 50.0%
GCTATGGATATGGCAGTGTC+AGG - chr7_4:61723060-61723079 None:intergenic 50.0%
GAAGCAACACCCTCATGACA+TGG - chr7_4:61724098-61724117 None:intergenic 50.0%
!! GTGTTGCTTCCAAGTTGAGC+TGG + chr7_4:61724108-61724127 Msa1168840:CDS 50.0%
! TTCCAAGTTGAGCTGGCAGA+TGG + chr7_4:61724115-61724134 Msa1168840:CDS 50.0%
TTCCATCTGCCAGCTCAACT+TGG - chr7_4:61724120-61724139 None:intergenic 50.0%
ATGGCGGTCGCCATGTCATT+GGG + chr7_4:61721327-61721346 Msa1168840:CDS 55.0%
CTCTCGAGGCATGAGTGTCT+TGG - chr7_4:61721560-61721579 None:intergenic 55.0%
CAAGACACTCATGCCTCGAG+AGG + chr7_4:61721558-61721577 Msa1168840:intron 55.0%
! GATGGCGGTCGCCATGTCAT+TGG + chr7_4:61721326-61721345 Msa1168840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 61720340 61724590 61720340 ID=Msa1168840;Name=Msa1168840
chr7_4 mRNA 61720340 61724590 61720340 ID=Msa1168840-mRNA-1;Parent=Msa1168840;Name=Msa1168840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=148|0.8|0.83|1|1|1|6|409|219
chr7_4 exon 61720340 61720610 61720340 ID=Msa1168840-mRNA-1:exon:19491;Parent=Msa1168840-mRNA-1
chr7_4 exon 61721251 61721376 61721251 ID=Msa1168840-mRNA-1:exon:19492;Parent=Msa1168840-mRNA-1
chr7_4 exon 61721924 61722023 61721924 ID=Msa1168840-mRNA-1:exon:19493;Parent=Msa1168840-mRNA-1
chr7_4 exon 61723321 61723391 61723321 ID=Msa1168840-mRNA-1:exon:19494;Parent=Msa1168840-mRNA-1
chr7_4 exon 61723493 61723636 61723493 ID=Msa1168840-mRNA-1:exon:19495;Parent=Msa1168840-mRNA-1
chr7_4 exon 61724086 61724590 61724086 ID=Msa1168840-mRNA-1:exon:19496;Parent=Msa1168840-mRNA-1
chr7_4 five_prime_UTR 61720340 61720487 61720340 ID=Msa1168840-mRNA-1:five_prime_utr;Parent=Msa1168840-mRNA-1
chr7_4 CDS 61720488 61720610 61720488 ID=Msa1168840-mRNA-1:cds;Parent=Msa1168840-mRNA-1
chr7_4 CDS 61721251 61721376 61721251 ID=Msa1168840-mRNA-1:cds;Parent=Msa1168840-mRNA-1
chr7_4 CDS 61721924 61722023 61721924 ID=Msa1168840-mRNA-1:cds;Parent=Msa1168840-mRNA-1
chr7_4 CDS 61723321 61723391 61723321 ID=Msa1168840-mRNA-1:cds;Parent=Msa1168840-mRNA-1
chr7_4 CDS 61723493 61723636 61723493 ID=Msa1168840-mRNA-1:cds;Parent=Msa1168840-mRNA-1
chr7_4 CDS 61724086 61724181 61724086 ID=Msa1168840-mRNA-1:cds;Parent=Msa1168840-mRNA-1
chr7_4 three_prime_UTR 61724182 61724590 61724182 ID=Msa1168840-mRNA-1:three_prime_utr;Parent=Msa1168840-mRNA-1
Gene Sequence

>Msa1168840

ATGGACTCACGCAATGGTGAAATAAGGCTTTCAAAGTTCAAAAGAATTTGTGTTTTCTGTGGAAGTAGTCCTGGTAAAAAAACTACCTACCAAGATGCTGCCATGAACCTTGGCAATGAATTGGTTTCAAGGAACATTGATCTTGTTTATGGAGGAGGAAGCATTGGTCTCATGGGTTTAGTTTCTCAAGCTGTTCATGATGGCGGTCGCCATGTCATTGGGTATATAACACTTTTCATCATCATTTTTCTAACTGGTGAAACAGTAGGAGAAGTGAAGGCTGTTGCTGATATGCATCAAAGGAAAGCTGAGATGGCTAAGCATTCAGATGCTTTTATTGCCTTACCAGGTGGATATGGAACTCTAGAGGAACTTCTTGAAGTCATAACATGGGCTCAACTTGGAATTCATGACAAGCCGGTTGGATTAGTAAATGTTGATGGATACTTTAACTCCTTGTTGTCATTCATTGACAAAGCTGTGGAAGAAGGGTTTATTAGTCCAAATGCTCGTCACATAATTGTATCAGCACCAACTGCAAAAGAGTTAGTTAAGAAGTTGGAGGAGTATGTTCCATGTCATGAGGGTGTTGCTTCCAAGTTGAGCTGGCAGATGGAACAGCAGCTAGCATACCCTCAAGATTATGACATCTCAAGGTAG

Protein sequence

>Msa1168840

MDSRNGEIRLSKFKRICVFCGSSPGKKTTYQDAAMNLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGYITLFIIIFLTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEEYVPCHEGVASKLSWQMEQQLAYPQDYDISR*