AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1069600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069600 MtrunA17_Chr7g0264181 99.545 220 1 0 1 220 1 220 1.16e-165 455
Msa1069600 MtrunA17_Chr1g0181131 94.444 216 12 0 5 220 4 219 6.55e-156 430
Msa1069600 MtrunA17_Chr2g0326841 85.854 205 29 0 4 208 3 207 4.37e-132 370
Msa1069600 MtrunA17_Chr4g0028871 89.119 193 21 0 13 205 12 204 6.92e-128 359
Msa1069600 MtrunA17_Chr3g0142491 77.143 210 48 0 11 220 12 221 3.15e-122 345
Msa1069600 MtrunA17_Chr1g0177391 73.206 209 54 1 11 219 6 212 2.20e-113 323
Msa1069600 MtrunA17_Chr1g0151201 67.157 204 65 1 12 213 7 210 9.84e-102 293
Msa1069600 MtrunA17_Chr1g0156401 65.179 112 18 1 41 131 1 112 1.10e-43 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069600 AT2G37210.1 87.019 208 27 0 1 208 1 208 2.44e-136 381
Msa1069600 AT3G53450.1 86.058 208 29 0 1 208 1 208 3.10e-134 376
Msa1069600 AT2G28305.1 85.238 210 30 1 11 220 5 213 1.63e-130 366
Msa1069600 AT2G37210.2 77.586 232 28 1 1 208 1 232 2.40e-130 367
Msa1069600 AT2G28305.3 90.503 179 17 0 11 189 5 183 8.04e-120 338
Msa1069600 AT5G06300.1 79.208 202 42 0 11 212 6 207 2.48e-119 338
Msa1069600 AT5G03270.1 83.871 186 30 0 11 196 16 201 3.61e-113 322
Msa1069600 AT4G35190.1 71.921 203 57 0 7 209 2 204 7.53e-110 315
Msa1069600 AT5G03270.2 83.978 181 29 0 11 191 16 196 2.06e-109 312
Msa1069600 AT2G35990.1 72.165 194 54 0 11 204 6 199 2.52e-108 310
Msa1069600 AT4G35190.2 73.575 193 49 1 7 199 2 192 8.88e-104 298
Msa1069600 AT5G11950.1 66.010 203 69 0 11 213 7 209 1.13e-101 293
Msa1069600 AT5G11950.2 66.010 203 69 0 11 213 7 209 1.13e-101 293
Msa1069600 AT5G11950.3 66.010 203 69 0 11 213 7 209 1.13e-101 293
Msa1069600 AT2G28305.2 90.909 132 12 0 11 142 5 136 4.40e-86 252
Msa1069600 AT2G35990.3 71.429 147 42 0 58 204 1 147 1.89e-78 233
Msa1069600 AT2G35990.2 71.429 147 42 0 58 204 1 147 1.89e-78 233
Msa1069600 AT5G11950.4 66.026 156 53 0 58 213 1 156 7.39e-75 224
Msa1069600 AT5G26140.2 52.318 151 50 1 85 213 6 156 2.30e-47 154
Msa1069600 AT5G26140.1 51.095 137 45 1 99 213 1 137 5.06e-40 134
Msa1069600 AT5G26140.3 54.717 106 48 0 108 213 17 122 8.82e-36 123

Find 66 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAACATTGATCTTGTTTA+TGG 0.168735 7_2:-65295546 Msa1069600:CDS
GTCATCGCAACAACGGAAAT+TGG 0.246190 7_2:+65292383 None:intergenic
TAATTTACATAAGAAATTAA+AGG 0.265324 7_2:+65292648 None:intergenic
GACCATATGATATAGAATTT+TGG 0.265482 7_2:-65292728 Msa1069600:three_prime_UTR
TTAACTTATGCAGGTGGATA+TGG 0.277547 7_2:-65293639 Msa1069600:intron
ACTAATCAACATTAAATAAT+AGG 0.279626 7_2:+65292520 None:intergenic
ATTTGTTAGTTGGAATAAAA+AGG 0.292300 7_2:+65296336 None:intergenic
CAATTCATTGCCAAGGTTCA+TGG 0.335336 7_2:+65296215 None:intergenic
GCTTTGTTGCTACTACTCTT+TGG 0.335661 7_2:+65296462 None:intergenic
ATAAGTAATTTAACTTTCAT+AGG 0.351644 7_2:+65292609 None:intergenic
ACAATTATGTGACGAGCATT+TGG 0.366388 7_2:+65293373 None:intergenic
ACTCACGCAATGGTGAAATA+AGG 0.394030 7_2:-65296311 Msa1069600:CDS
GTTGGATTAGTAAATGTTGA+TGG 0.409542 7_2:-65293454 Msa1069600:CDS
CTCCAAAATTCTATATCATA+TGG 0.431525 7_2:+65292726 None:intergenic
CTCTCGAGGCATGAGTGTCT+TGG 0.437050 7_2:+65295244 None:intergenic
GATGGTGGTCGCCATGTCAT+TGG 0.439047 7_2:-65295477 Msa1069600:CDS
ATTGACAAAGCTGTGGAAGA+AGG 0.461566 7_2:-65293406 Msa1069600:CDS
GCGTGAGTCCATTTGTTAGT+TGG 0.464138 7_2:+65296326 None:intergenic
TCTCGAGGCATGAGTGTCTT+GGG 0.468747 7_2:+65295245 None:intergenic
CATGAACCTTGGCAATGAAT+TGG 0.469550 7_2:-65296214 Msa1069600:intron
TTCCATCTGCCAGCTCAACT+TGG 0.470523 7_2:+65292830 None:intergenic
TTGAGATGTCATAATCTTGA+GGG 0.471297 7_2:+65292793 None:intergenic
GTCATAACATGGGCTCAACT+TGG 0.475221 7_2:-65293594 Msa1069600:CDS
GTTTCTCAAGCTGTTCATGA+TGG 0.477189 7_2:-65295495 Msa1069600:CDS
ATTGATCTTGTTTATGGAGG+AGG 0.482065 7_2:-65295540 Msa1069600:CDS
CAAGGTTCATGGCAGCATCT+TGG 0.485744 7_2:+65296226 None:intergenic
AAAAGAGTTAGTTAAGAAGT+TGG 0.487121 7_2:-65293335 Msa1069600:CDS
AAAGATGAGGATGACTCTTA+AGG 0.487617 7_2:+65292478 None:intergenic
AGGAGGAAGCATTGGTCTCA+TGG 0.491447 7_2:-65295523 Msa1069600:CDS
GTTTATGGAGGAGGAAGCAT+TGG 0.504128 7_2:-65295531 Msa1069600:CDS
GTGTTGCTTCCAAGTTGAGC+TGG 0.509075 7_2:-65292839 Msa1069600:CDS
TGCTAAGTGCTAACCTGGTA+AGG 0.510169 7_2:+65294932 None:intergenic
ATGGTGGTCGCCATGTCATT+GGG 0.511363 7_2:-65295476 Msa1069600:intron
AGAGTTAGTTAAGAAGTTGG+AGG 0.516344 7_2:-65293332 Msa1069600:intron
TTGACAAAGCTGTGGAAGAA+GGG 0.531943 7_2:-65293405 Msa1069600:CDS
AACATTGATCTTGTTTATGG+AGG 0.533518 7_2:-65295543 Msa1069600:CDS
CAAGATGCTGCCATGAACCT+TGG 0.535202 7_2:-65296225 Msa1069600:CDS
CTCAAGATTATGACATCTCA+AGG 0.546895 7_2:-65292791 Msa1069600:CDS
GCATCAAAGGAAAGCTGAGA+TGG 0.549979 7_2:-65294979 Msa1069600:CDS
GGAGGAAGCATTGGTCTCAT+GGG 0.550392 7_2:-65295522 Msa1069600:CDS
TACATACCAATTCATTGCCA+AGG 0.561261 7_2:+65296208 None:intergenic
TTCCAAGTTGAGCTGGCAGA+TGG 0.564883 7_2:-65292832 Msa1069600:CDS
CAGCTAACTGGTGAAACAGT+AGG 0.567165 7_2:-65295026 Msa1069600:CDS
CTGTTGCTGATATGCATCAA+AGG 0.573128 7_2:-65294992 Msa1069600:CDS
CTTGAGATGTCATAATCTTG+AGG 0.576949 7_2:+65292792 None:intergenic
TAACAAATGGACTCACGCAA+TGG 0.580220 7_2:-65296321 Msa1069600:exon
TCTCAAGCTGTTCATGATGG+TGG 0.580895 7_2:-65295492 Msa1069600:CDS
ACAGTGAAAGACAAAGATGA+AGG 0.582119 7_2:+65296400 None:intergenic
TACTAGACAAATACCTCTCG+AGG 0.584424 7_2:+65295230 None:intergenic
CTATGTTTACTTCACTTGCA+AGG 0.592333 7_2:-65292758 Msa1069600:three_prime_UTR
GAAGCAACACCCTCATGACA+TGG 0.600653 7_2:+65292852 None:intergenic
AACTTCTTGAAGTCATAACA+TGG 0.604120 7_2:-65293605 Msa1069600:CDS
CTTGATCAACACAAAAGATG+AGG 0.611603 7_2:+65292465 None:intergenic
ACTTGGAATTCATGACAAGC+CGG 0.616968 7_2:-65293577 Msa1069600:intron
GGAGTATGTTCCATGTCATG+AGG 0.617100 7_2:-65292862 Msa1069600:CDS
GTTCATGGCAGCATCTTGGT+AGG 0.620771 7_2:+65296230 None:intergenic
TGAAACAGTAGGAGAAGTGA+AGG 0.624185 7_2:-65295015 Msa1069600:CDS
CAAGACACTCATGCCTCGAG+AGG 0.636692 7_2:-65295243 Msa1069600:intron
GTCATTCATTGACAAAGCTG+TGG 0.639783 7_2:-65293413 Msa1069600:CDS
GAGTATGTTCCATGTCATGA+GGG 0.646303 7_2:-65292861 Msa1069600:CDS
TGTATTTGTCATCGCAACAA+CGG 0.652612 7_2:+65292376 None:intergenic
TAAAATCAAAGTTTATAACA+AGG 0.654833 7_2:+65292581 None:intergenic
GTGTTATATACCCAATGACA+TGG 0.655296 7_2:+65295466 None:intergenic
AGGTGGATATGGAACTCTAG+AGG 0.671132 7_2:-65293628 Msa1069600:CDS
TTTGTCAATGAATGACAACA+AGG 0.686987 7_2:+65293420 None:intergenic
ACTTCTTGAAGTCATAACAT+GGG 0.690032 7_2:-65293604 Msa1069600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATATGAAAATGT+CGG + chr7_2:65294033-65294052 None:intergenic 10.0%
!! TTTAAAAATGAAAGATAAAA+AGG + chr7_2:65294174-65294193 None:intergenic 10.0%
!!! TCCAATATTTTATATTTTAA+GGG + chr7_2:65294529-65294548 None:intergenic 10.0%
!!! AATATTATTTTTTTTGACAA+TGG + chr7_2:65295623-65295642 None:intergenic 10.0%
!! TTAATTAATAAGTATACAAT+TGG + chr7_2:65295904-65295923 None:intergenic 10.0%
!! TAATTTACATAAGAAATTAA+AGG + chr7_2:65296197-65296216 None:intergenic 10.0%
!! AAAAATTAATATGAAAATGT+CGG + chr7_2:65294033-65294052 None:intergenic 10.0%
!! TTTAAAAATGAAAGATAAAA+AGG + chr7_2:65294174-65294193 None:intergenic 10.0%
!!! TCCAATATTTTATATTTTAA+GGG + chr7_2:65294529-65294548 None:intergenic 10.0%
!!! AATATTATTTTTTTTGACAA+TGG + chr7_2:65295623-65295642 None:intergenic 10.0%
!! TTAATTAATAAGTATACAAT+TGG + chr7_2:65295904-65295923 None:intergenic 10.0%
!! TAATTTACATAAGAAATTAA+AGG + chr7_2:65296197-65296216 None:intergenic 10.0%
!!! TTAATTTTTTGTTGTTTACT+TGG - chr7_2:65294044-65294063 Msa1069600:intron 15.0%
!!! TTTTAAAACAACATGATTTA+AGG + chr7_2:65294330-65294349 None:intergenic 15.0%
!!! ATTTTATATTTTAAGGGATA+AGG + chr7_2:65294523-65294542 None:intergenic 15.0%
!! TCCCTTAAAATATAAAATAT+TGG - chr7_2:65294525-65294544 Msa1069600:intron 15.0%
!!! GTCCAATATTTTATATTTTA+AGG + chr7_2:65294530-65294549 None:intergenic 15.0%
!! ATACTCAAAATAAATTACTT+AGG + chr7_2:65294803-65294822 None:intergenic 15.0%
!! TTATCATTTATGAATTAATC+TGG - chr7_2:65295344-65295363 Msa1069600:intron 15.0%
!!! AAGATTTGAAATTAATTTAC+AGG - chr7_2:65295959-65295978 Msa1069600:intron 15.0%
!!! ATAAGTAATTTAACTTTCAT+AGG + chr7_2:65296236-65296255 None:intergenic 15.0%
!! TAAAATCAAAGTTTATAACA+AGG + chr7_2:65296264-65296283 None:intergenic 15.0%
!! ACTAATCAACATTAAATAAT+AGG + chr7_2:65296325-65296344 None:intergenic 15.0%
!!! TAGTAGTTTTTATATTTAAC+TGG - chr7_2:65296341-65296360 Msa1069600:five_prime_UTR 15.0%
!!! AAGATTTTAAATTGTTATCA+TGG - chr7_2:65296397-65296416 Msa1069600:five_prime_UTR 15.0%
!!! TTAATTTTTTGTTGTTTACT+TGG - chr7_2:65294044-65294063 Msa1069600:intron 15.0%
!!! TTTTAAAACAACATGATTTA+AGG + chr7_2:65294330-65294349 None:intergenic 15.0%
!!! ATTTTATATTTTAAGGGATA+AGG + chr7_2:65294523-65294542 None:intergenic 15.0%
!! TCCCTTAAAATATAAAATAT+TGG - chr7_2:65294525-65294544 Msa1069600:intron 15.0%
!!! GTCCAATATTTTATATTTTA+AGG + chr7_2:65294530-65294549 None:intergenic 15.0%
!! ATACTCAAAATAAATTACTT+AGG + chr7_2:65294803-65294822 None:intergenic 15.0%
!! TTATCATTTATGAATTAATC+TGG - chr7_2:65295344-65295363 Msa1069600:intron 15.0%
!!! AAGATTTGAAATTAATTTAC+AGG - chr7_2:65295959-65295978 Msa1069600:intron 15.0%
!!! ATAAGTAATTTAACTTTCAT+AGG + chr7_2:65296236-65296255 None:intergenic 15.0%
!! TAAAATCAAAGTTTATAACA+AGG + chr7_2:65296264-65296283 None:intergenic 15.0%
!! ACTAATCAACATTAAATAAT+AGG + chr7_2:65296325-65296344 None:intergenic 15.0%
!!! TAGTAGTTTTTATATTTAAC+TGG - chr7_2:65296341-65296360 Msa1069600:five_prime_UTR 15.0%
!!! AAGATTTTAAATTGTTATCA+TGG - chr7_2:65296397-65296416 Msa1069600:five_prime_UTR 15.0%
!! TAATGAAGAAAAAGAAGAAA+AGG + chr7_2:65292421-65292440 None:intergenic 20.0%
!! AATAAAAAGGTAACTAACTA+GGG + chr7_2:65292496-65292515 None:intergenic 20.0%
!!! ATTTGTTAGTTGGAATAAAA+AGG + chr7_2:65292509-65292528 None:intergenic 20.0%
!!! TTTTTATTCCAACTAACAAA+TGG - chr7_2:65292508-65292527 Msa1069600:three_prime_UTR 20.0%
!!! ACACTTTGATTAATGTTTTT+GGG + chr7_2:65292927-65292946 None:intergenic 20.0%
!!! AACACTTTGATTAATGTTTT+TGG + chr7_2:65292928-65292947 None:intergenic 20.0%
!!! TCCATTTTTGTTTCATATTA+AGG - chr7_2:65292964-65292983 Msa1069600:intron 20.0%
!! ACCTTAATATGAAACAAAAA+TGG + chr7_2:65292968-65292987 None:intergenic 20.0%
!! TGTTAATTAATGAGTAAAAG+AGG + chr7_2:65293537-65293556 None:intergenic 20.0%
!! TTTAATAACAGAAGGTAAAA+GGG + chr7_2:65293648-65293667 None:intergenic 20.0%
!!! AAAAATGTTGTTTATGTCTT+TGG - chr7_2:65293778-65293797 Msa1069600:intron 20.0%
!!! GAAACAATTGTTTTTTTCAA+AGG + chr7_2:65294009-65294028 None:intergenic 20.0%
!!! TTGTTTTTGTTGATTTGATT+TGG - chr7_2:65294210-65294229 Msa1069600:intron 20.0%
!! TCCAATGTTTATGATTAATA+AGG - chr7_2:65294441-65294460 Msa1069600:intron 20.0%
!! TCCTTATTAATCATAAACAT+TGG + chr7_2:65294445-65294464 None:intergenic 20.0%
!! TTATATACAAATCATTCCTT+GGG + chr7_2:65294912-65294931 None:intergenic 20.0%
!! TTTATATACAAATCATTCCT+TGG + chr7_2:65294913-65294932 None:intergenic 20.0%
!! TACAATTCAGATTATAATCA+TGG - chr7_2:65295141-65295160 Msa1069600:intron 20.0%
!! TAATGAAGAAAAAGAAGAAA+AGG + chr7_2:65292421-65292440 None:intergenic 20.0%
!! AATAAAAAGGTAACTAACTA+GGG + chr7_2:65292496-65292515 None:intergenic 20.0%
!!! ATTTGTTAGTTGGAATAAAA+AGG + chr7_2:65292509-65292528 None:intergenic 20.0%
!!! TTTTTATTCCAACTAACAAA+TGG - chr7_2:65292508-65292527 Msa1069600:three_prime_UTR 20.0%
!!! ACACTTTGATTAATGTTTTT+GGG + chr7_2:65292927-65292946 None:intergenic 20.0%
!!! AACACTTTGATTAATGTTTT+TGG + chr7_2:65292928-65292947 None:intergenic 20.0%
!!! TCCATTTTTGTTTCATATTA+AGG - chr7_2:65292964-65292983 Msa1069600:intron 20.0%
!! ACCTTAATATGAAACAAAAA+TGG + chr7_2:65292968-65292987 None:intergenic 20.0%
!! TGTTAATTAATGAGTAAAAG+AGG + chr7_2:65293537-65293556 None:intergenic 20.0%
!! TTTAATAACAGAAGGTAAAA+GGG + chr7_2:65293648-65293667 None:intergenic 20.0%
!!! AAAAATGTTGTTTATGTCTT+TGG - chr7_2:65293778-65293797 Msa1069600:intron 20.0%
!!! GAAACAATTGTTTTTTTCAA+AGG + chr7_2:65294009-65294028 None:intergenic 20.0%
!!! TTGTTTTTGTTGATTTGATT+TGG - chr7_2:65294210-65294229 Msa1069600:intron 20.0%
!! TCCAATGTTTATGATTAATA+AGG - chr7_2:65294441-65294460 Msa1069600:intron 20.0%
!! TCCTTATTAATCATAAACAT+TGG + chr7_2:65294445-65294464 None:intergenic 20.0%
!! TTATATACAAATCATTCCTT+GGG + chr7_2:65294912-65294931 None:intergenic 20.0%
!! TTTATATACAAATCATTCCT+TGG + chr7_2:65294913-65294932 None:intergenic 20.0%
!! TACAATTCAGATTATAATCA+TGG - chr7_2:65295141-65295160 Msa1069600:intron 20.0%
! GAATAAAAAGGTAACTAACT+AGG + chr7_2:65292497-65292516 None:intergenic 25.0%
!! AAAAGAATTTGTGTTTTCTG+TGG - chr7_2:65292566-65292585 Msa1069600:three_prime_UTR 25.0%
! AACTCACTTATTGAAAAATG+TGG + chr7_2:65292728-65292747 None:intergenic 25.0%
!! TTTCAATAAGTGAGTTGAAA+TGG - chr7_2:65292732-65292751 Msa1069600:three_prime_UTR 25.0%
!! AGTGAATTTCAGTTTTTGTA+AGG - chr7_2:65292838-65292857 Msa1069600:CDS 25.0%
! AAGGTTATATACTCTGTATT+TGG - chr7_2:65292857-65292876 Msa1069600:CDS 25.0%
! TTTGGGCTTAATGTATATAA+TGG + chr7_2:65292910-65292929 None:intergenic 25.0%
!! TTTTCTTTTCTTTCATCACA+TGG - chr7_2:65293155-65293174 Msa1069600:intron 25.0%
!! TTTCTTTTCTTTCATCACAT+GGG - chr7_2:65293156-65293175 Msa1069600:intron 25.0%
! GAAACAAGAAAACCAAATAA+CGG + chr7_2:65293228-65293247 None:intergenic 25.0%
! AGAGAACAAAAATTAACACT+TGG - chr7_2:65293479-65293498 Msa1069600:intron 25.0%
! TTAATAACAGAAGGTAAAAG+GGG + chr7_2:65293647-65293666 None:intergenic 25.0%
! CTTTAATAACAGAAGGTAAA+AGG + chr7_2:65293649-65293668 None:intergenic 25.0%
! TAGTACACTTTAATAACAGA+AGG + chr7_2:65293656-65293675 None:intergenic 25.0%
! TCTAAACATAAGAGAAAATC+AGG + chr7_2:65293749-65293768 None:intergenic 25.0%
! TCAAAGTTATTCATTACTTG+TGG + chr7_2:65294245-65294264 None:intergenic 25.0%
! TAATTCGTAAACAACTTTCA+TGG - chr7_2:65294403-65294422 Msa1069600:intron 25.0%
!!! ATTATCAAGTAAGCTTTGAA+GGG + chr7_2:65294475-65294494 None:intergenic 25.0%
!!! ATATTTTAAGGGATAAGGTA+AGG + chr7_2:65294518-65294537 None:intergenic 25.0%
!! AACAAAAGTAGTGGAAAAAA+TGG + chr7_2:65294605-65294624 None:intergenic 25.0%
! ACTATACTAACTAAATACCA+TGG - chr7_2:65294996-65295015 Msa1069600:CDS 25.0%
! TATGATATTGTAGAGAATTG+CGG - chr7_2:65295049-65295068 Msa1069600:intron 25.0%
! TTGTAACATCAATGTTTGTT+AGG + chr7_2:65295126-65295145 None:intergenic 25.0%
! ATTCAGATTATAATCATGGA+TGG - chr7_2:65295145-65295164 Msa1069600:intron 25.0%
!! TTTTCTGAATTAACTTATGC+AGG - chr7_2:65295194-65295213 Msa1069600:intron 25.0%
! AGATATAGATTCCTCAAAAT+TGG + chr7_2:65295306-65295325 None:intergenic 25.0%
! GCTTATAATTACAAACTTGT+AGG - chr7_2:65295366-65295385 Msa1069600:intron 25.0%
! ATAATTACAAACTTGTAGGT+TGG - chr7_2:65295370-65295389 Msa1069600:intron 25.0%
! AAAAGAGTTAGTTAAGAAGT+TGG - chr7_2:65295507-65295526 Msa1069600:CDS 25.0%
!! TACCTATAGTTTTCTTAGTT+AGG + chr7_2:65295548-65295567 None:intergenic 25.0%
!! GACCATATGATATAGAATTT+TGG - chr7_2:65296114-65296133 Msa1069600:intron 25.0%
! CTCCAAAATTCTATATCATA+TGG + chr7_2:65296119-65296138 None:intergenic 25.0%
!! CATATGATATAGAATTTTGG+AGG - chr7_2:65296117-65296136 Msa1069600:intron 25.0%
! GAATAAAAAGGTAACTAACT+AGG + chr7_2:65292497-65292516 None:intergenic 25.0%
!! AAAAGAATTTGTGTTTTCTG+TGG - chr7_2:65292566-65292585 Msa1069600:three_prime_UTR 25.0%
! AACTCACTTATTGAAAAATG+TGG + chr7_2:65292728-65292747 None:intergenic 25.0%
!! TTTCAATAAGTGAGTTGAAA+TGG - chr7_2:65292732-65292751 Msa1069600:three_prime_UTR 25.0%
!! AGTGAATTTCAGTTTTTGTA+AGG - chr7_2:65292838-65292857 Msa1069600:CDS 25.0%
! AAGGTTATATACTCTGTATT+TGG - chr7_2:65292857-65292876 Msa1069600:CDS 25.0%
! TTTGGGCTTAATGTATATAA+TGG + chr7_2:65292910-65292929 None:intergenic 25.0%
!! TTTTCTTTTCTTTCATCACA+TGG - chr7_2:65293155-65293174 Msa1069600:intron 25.0%
!! TTTCTTTTCTTTCATCACAT+GGG - chr7_2:65293156-65293175 Msa1069600:intron 25.0%
! GAAACAAGAAAACCAAATAA+CGG + chr7_2:65293228-65293247 None:intergenic 25.0%
! AGAGAACAAAAATTAACACT+TGG - chr7_2:65293479-65293498 Msa1069600:intron 25.0%
! TTAATAACAGAAGGTAAAAG+GGG + chr7_2:65293647-65293666 None:intergenic 25.0%
! CTTTAATAACAGAAGGTAAA+AGG + chr7_2:65293649-65293668 None:intergenic 25.0%
! TAGTACACTTTAATAACAGA+AGG + chr7_2:65293656-65293675 None:intergenic 25.0%
! TCTAAACATAAGAGAAAATC+AGG + chr7_2:65293749-65293768 None:intergenic 25.0%
! TCAAAGTTATTCATTACTTG+TGG + chr7_2:65294245-65294264 None:intergenic 25.0%
! TAATTCGTAAACAACTTTCA+TGG - chr7_2:65294403-65294422 Msa1069600:intron 25.0%
!!! ATTATCAAGTAAGCTTTGAA+GGG + chr7_2:65294475-65294494 None:intergenic 25.0%
!!! ATATTTTAAGGGATAAGGTA+AGG + chr7_2:65294518-65294537 None:intergenic 25.0%
!! AACAAAAGTAGTGGAAAAAA+TGG + chr7_2:65294605-65294624 None:intergenic 25.0%
! ACTATACTAACTAAATACCA+TGG - chr7_2:65294996-65295015 Msa1069600:CDS 25.0%
! TATGATATTGTAGAGAATTG+CGG - chr7_2:65295049-65295068 Msa1069600:intron 25.0%
! TTGTAACATCAATGTTTGTT+AGG + chr7_2:65295126-65295145 None:intergenic 25.0%
! ATTCAGATTATAATCATGGA+TGG - chr7_2:65295145-65295164 Msa1069600:intron 25.0%
!! TTTTCTGAATTAACTTATGC+AGG - chr7_2:65295194-65295213 Msa1069600:intron 25.0%
! AGATATAGATTCCTCAAAAT+TGG + chr7_2:65295306-65295325 None:intergenic 25.0%
! GCTTATAATTACAAACTTGT+AGG - chr7_2:65295366-65295385 Msa1069600:intron 25.0%
! ATAATTACAAACTTGTAGGT+TGG - chr7_2:65295370-65295389 Msa1069600:intron 25.0%
! AAAAGAGTTAGTTAAGAAGT+TGG - chr7_2:65295507-65295526 Msa1069600:CDS 25.0%
!! TACCTATAGTTTTCTTAGTT+AGG + chr7_2:65295548-65295567 None:intergenic 25.0%
!! GACCATATGATATAGAATTT+TGG - chr7_2:65296114-65296133 Msa1069600:intron 25.0%
! CTCCAAAATTCTATATCATA+TGG + chr7_2:65296119-65296138 None:intergenic 25.0%
!! CATATGATATAGAATTTTGG+AGG - chr7_2:65296117-65296136 Msa1069600:intron 25.0%
! TTTTAGTCCGTACAAATGTT+TGG + chr7_2:65293014-65293033 None:intergenic 30.0%
!!! TGATGTTGTTTGTTTTGTGA+AGG - chr7_2:65293268-65293287 Msa1069600:intron 30.0%
!!! TTTGTTTTGTGAAGGTTTCA+AGG - chr7_2:65293276-65293295 Msa1069600:intron 30.0%
! AGGAACATTGATCTTGTTTA+TGG - chr7_2:65293296-65293315 Msa1069600:intron 30.0%
! AACATTGATCTTGTTTATGG+AGG - chr7_2:65293299-65293318 Msa1069600:intron 30.0%
TCTCTCAAAGTTGTACTATT+TGG - chr7_2:65293440-65293459 Msa1069600:CDS 30.0%
CTCTCAAAGTTGTACTATTT+GGG - chr7_2:65293441-65293460 Msa1069600:CDS 30.0%
AAAAGAGGTTAACAAAAGCT+TGG + chr7_2:65293522-65293541 None:intergenic 30.0%
AGGAATCAAACAATGAGATA+TGG + chr7_2:65293989-65294008 None:intergenic 30.0%
! CAACTATTGTTGTGTTTTGT+GGG - chr7_2:65294130-65294149 Msa1069600:intron 30.0%
! AACTATTGTTGTGTTTTGTG+GGG - chr7_2:65294131-65294150 Msa1069600:intron 30.0%
ATGAATAACTTTGACTAGTG+TGG - chr7_2:65294251-65294270 Msa1069600:intron 30.0%
! CATTATCAAGTAAGCTTTGA+AGG + chr7_2:65294476-65294495 None:intergenic 30.0%
!! ACTTGCTTCATTTGATAATG+AGG - chr7_2:65294649-65294668 Msa1069600:intron 30.0%
!! CTTGCTTCATTTGATAATGA+GGG - chr7_2:65294650-65294669 Msa1069600:intron 30.0%
AATGAGGGAAAGTAAAGAAA+AGG - chr7_2:65294665-65294684 Msa1069600:intron 30.0%
CAGTAGAAAGGTTATTGAAA+AGG + chr7_2:65294744-65294763 None:intergenic 30.0%
! AGTTTTCAATCACTCTTTCT+TGG - chr7_2:65294864-65294883 Msa1069600:intron 30.0%
! GTTTTCAATCACTCTTTCTT+GGG - chr7_2:65294865-65294884 Msa1069600:intron 30.0%
CCACGATTTAAATAAATCCA+TGG + chr7_2:65295016-65295035 None:intergenic 30.0%
CCATGGATTTATTTAAATCG+TGG - chr7_2:65295013-65295032 Msa1069600:CDS 30.0%
AACTTCTTGAAGTCATAACA+TGG - chr7_2:65295237-65295256 Msa1069600:intron 30.0%
ACTTCTTGAAGTCATAACAT+GGG - chr7_2:65295238-65295257 Msa1069600:intron 30.0%
TTGGACATGTCAATTATTAC+CGG + chr7_2:65295287-65295306 None:intergenic 30.0%
! AATTGACATGTCCAATTTTG+AGG - chr7_2:65295292-65295311 Msa1069600:intron 30.0%
!! GTTGGATTAGTAAATGTTGA+TGG - chr7_2:65295388-65295407 Msa1069600:intron 30.0%
TTTGTCAATGAATGACAACA+AGG + chr7_2:65295425-65295444 None:intergenic 30.0%
! TTAACTAACTCTTTTGCAGT+TGG + chr7_2:65295502-65295521 None:intergenic 30.0%
GTCCTAACTAAGAAAACTAT+AGG - chr7_2:65295543-65295562 Msa1069600:CDS 30.0%
TTGGATAAACTAGAGGATAT+TGG + chr7_2:65295653-65295672 None:intergenic 30.0%
TTGTGAGAATCAGATTGAAA+AGG + chr7_2:65295719-65295738 None:intergenic 30.0%
CAAAGAAAGTGATTTCACAT+GGG + chr7_2:65295756-65295775 None:intergenic 30.0%
TCAAAGAAAGTGATTTCACA+TGG + chr7_2:65295757-65295776 None:intergenic 30.0%
TTGAGATGTCATAATCTTGA+GGG + chr7_2:65296052-65296071 None:intergenic 30.0%
!! ATGATATAGAATTTTGGAGG+TGG - chr7_2:65296120-65296139 Msa1069600:intron 30.0%
! TTTTAGTCCGTACAAATGTT+TGG + chr7_2:65293014-65293033 None:intergenic 30.0%
!!! TGATGTTGTTTGTTTTGTGA+AGG - chr7_2:65293268-65293287 Msa1069600:intron 30.0%
!!! TTTGTTTTGTGAAGGTTTCA+AGG - chr7_2:65293276-65293295 Msa1069600:intron 30.0%
! AGGAACATTGATCTTGTTTA+TGG - chr7_2:65293296-65293315 Msa1069600:intron 30.0%
! AACATTGATCTTGTTTATGG+AGG - chr7_2:65293299-65293318 Msa1069600:intron 30.0%
TCTCTCAAAGTTGTACTATT+TGG - chr7_2:65293440-65293459 Msa1069600:CDS 30.0%
CTCTCAAAGTTGTACTATTT+GGG - chr7_2:65293441-65293460 Msa1069600:CDS 30.0%
AAAAGAGGTTAACAAAAGCT+TGG + chr7_2:65293522-65293541 None:intergenic 30.0%
AGGAATCAAACAATGAGATA+TGG + chr7_2:65293989-65294008 None:intergenic 30.0%
! CAACTATTGTTGTGTTTTGT+GGG - chr7_2:65294130-65294149 Msa1069600:intron 30.0%
! AACTATTGTTGTGTTTTGTG+GGG - chr7_2:65294131-65294150 Msa1069600:intron 30.0%
ATGAATAACTTTGACTAGTG+TGG - chr7_2:65294251-65294270 Msa1069600:intron 30.0%
! CATTATCAAGTAAGCTTTGA+AGG + chr7_2:65294476-65294495 None:intergenic 30.0%
!! ACTTGCTTCATTTGATAATG+AGG - chr7_2:65294649-65294668 Msa1069600:intron 30.0%
!! CTTGCTTCATTTGATAATGA+GGG - chr7_2:65294650-65294669 Msa1069600:intron 30.0%
AATGAGGGAAAGTAAAGAAA+AGG - chr7_2:65294665-65294684 Msa1069600:intron 30.0%
CAGTAGAAAGGTTATTGAAA+AGG + chr7_2:65294744-65294763 None:intergenic 30.0%
! AGTTTTCAATCACTCTTTCT+TGG - chr7_2:65294864-65294883 Msa1069600:intron 30.0%
! GTTTTCAATCACTCTTTCTT+GGG - chr7_2:65294865-65294884 Msa1069600:intron 30.0%
CCACGATTTAAATAAATCCA+TGG + chr7_2:65295016-65295035 None:intergenic 30.0%
CCATGGATTTATTTAAATCG+TGG - chr7_2:65295013-65295032 Msa1069600:CDS 30.0%
AACTTCTTGAAGTCATAACA+TGG - chr7_2:65295237-65295256 Msa1069600:intron 30.0%
ACTTCTTGAAGTCATAACAT+GGG - chr7_2:65295238-65295257 Msa1069600:intron 30.0%
TTGGACATGTCAATTATTAC+CGG + chr7_2:65295287-65295306 None:intergenic 30.0%
! AATTGACATGTCCAATTTTG+AGG - chr7_2:65295292-65295311 Msa1069600:intron 30.0%
!! GTTGGATTAGTAAATGTTGA+TGG - chr7_2:65295388-65295407 Msa1069600:intron 30.0%
TTTGTCAATGAATGACAACA+AGG + chr7_2:65295425-65295444 None:intergenic 30.0%
! TTAACTAACTCTTTTGCAGT+TGG + chr7_2:65295502-65295521 None:intergenic 30.0%
GTCCTAACTAAGAAAACTAT+AGG - chr7_2:65295543-65295562 Msa1069600:CDS 30.0%
TTGGATAAACTAGAGGATAT+TGG + chr7_2:65295653-65295672 None:intergenic 30.0%
TTGTGAGAATCAGATTGAAA+AGG + chr7_2:65295719-65295738 None:intergenic 30.0%
CAAAGAAAGTGATTTCACAT+GGG + chr7_2:65295756-65295775 None:intergenic 30.0%
TCAAAGAAAGTGATTTCACA+TGG + chr7_2:65295757-65295776 None:intergenic 30.0%
TTGAGATGTCATAATCTTGA+GGG + chr7_2:65296052-65296071 None:intergenic 30.0%
!! ATGATATAGAATTTTGGAGG+TGG - chr7_2:65296120-65296139 Msa1069600:intron 30.0%
ACAGTGAAAGACAAAGATGA+AGG + chr7_2:65292445-65292464 None:intergenic 35.0%
!!! TGGTAGGTAGTTTTTTTACC+AGG + chr7_2:65292599-65292618 None:intergenic 35.0%
TACATACCAATTCATTGCCA+AGG + chr7_2:65292637-65292656 None:intergenic 35.0%
! GTGAGTTGAAATGGTGTATA+TGG - chr7_2:65292741-65292760 Msa1069600:three_prime_UTR 35.0%
CTCTGAACCAAACATTTGTA+CGG - chr7_2:65293004-65293023 Msa1069600:intron 35.0%
GAAGGTAAAAAGTGAGAAGA+AGG + chr7_2:65293081-65293100 None:intergenic 35.0%
!! CTTTGAAATGCAAACAGTGA+AGG + chr7_2:65293099-65293118 None:intergenic 35.0%
ACAAGAAAACCAAATAACGG+TGG + chr7_2:65293225-65293244 None:intergenic 35.0%
! ATTGATCTTGTTTATGGAGG+AGG - chr7_2:65293302-65293321 Msa1069600:intron 35.0%
GTGTTATATACCCAATGACA+TGG + chr7_2:65293379-65293398 None:intergenic 35.0%
CGCTCAAAATTTGATGTATC+TGG - chr7_2:65293682-65293701 Msa1069600:intron 35.0%
!!! TGGTTGCTTTTTAGACAGAA+TGG - chr7_2:65294064-65294083 Msa1069600:intron 35.0%
CCACAAAACACAACAATAGT+TGG + chr7_2:65294132-65294151 None:intergenic 35.0%
! CCAACTATTGTTGTGTTTTG+TGG - chr7_2:65294129-65294148 Msa1069600:intron 35.0%
! GTTTGAAGCAATGAGAAAAG+AGG + chr7_2:65294374-65294393 None:intergenic 35.0%
TTAAGGGATAAGGTAAGGTA+AGG + chr7_2:65294513-65294532 None:intergenic 35.0%
TGTGTCTCTGATCAACTATA+TGG - chr7_2:65294566-65294585 Msa1069600:intron 35.0%
TCTGATCAACTATATGGTTC+AGG - chr7_2:65294572-65294591 Msa1069600:intron 35.0%
CACTGTTCAAACAAAAGTAG+TGG + chr7_2:65294614-65294633 None:intergenic 35.0%
!! CACTACTTTTGTTTGAACAG+TGG - chr7_2:65294612-65294631 Msa1069600:intron 35.0%
GAAAAGGATGAAACAATGTC+AGG + chr7_2:65294728-65294747 None:intergenic 35.0%
AACTAGTACTAGCAGTAGAA+AGG + chr7_2:65294756-65294775 None:intergenic 35.0%
AAAATTAGTGACAGAGAGAG+TGG - chr7_2:65294825-65294844 Msa1069600:intron 35.0%
! TGGGAATCAATTTTCTTAGG+AGG + chr7_2:65294893-65294912 None:intergenic 35.0%
! CCTTGGGAATCAATTTTCTT+AGG + chr7_2:65294896-65294915 None:intergenic 35.0%
! CCTAAGAAAATTGATTCCCA+AGG - chr7_2:65294893-65294912 Msa1069600:intron 35.0%
TCCAAATGTAGCTATGGATA+TGG + chr7_2:65294965-65294984 None:intergenic 35.0%
TTTGTGTCCAAATGTAGCTA+TGG + chr7_2:65294971-65294990 None:intergenic 35.0%
TTATTTAAATCGTGGTCGCA+TGG - chr7_2:65295021-65295040 Msa1069600:CDS 35.0%
GTTTGATGTAGCTTCAATTG+TGG - chr7_2:65295080-65295099 Msa1069600:intron 35.0%
TCTGAATTAACTTATGCAGG+TGG - chr7_2:65295197-65295216 Msa1069600:intron 35.0%
TTAACTTATGCAGGTGGATA+TGG - chr7_2:65295203-65295222 Msa1069600:intron 35.0%
ACAATTATGTGACGAGCATT+TGG + chr7_2:65295472-65295491 None:intergenic 35.0%
AGAGTTAGTTAAGAAGTTGG+AGG - chr7_2:65295510-65295529 Msa1069600:CDS 35.0%
GAACTTCTTGGATAAACTAG+AGG + chr7_2:65295660-65295679 None:intergenic 35.0%
CTTGAGATGTCATAATCTTG+AGG + chr7_2:65296053-65296072 None:intergenic 35.0%
CTCAAGATTATGACATCTCA+AGG - chr7_2:65296051-65296070 Msa1069600:intron 35.0%
CTATGTTTACTTCACTTGCA+AGG - chr7_2:65296084-65296103 Msa1069600:intron 35.0%
AAAGATGAGGATGACTCTTA+AGG + chr7_2:65296367-65296386 None:intergenic 35.0%
CTTGATCAACACAAAAGATG+AGG + chr7_2:65296380-65296399 None:intergenic 35.0%
ACAGTGAAAGACAAAGATGA+AGG + chr7_2:65292445-65292464 None:intergenic 35.0%
!!! TGGTAGGTAGTTTTTTTACC+AGG + chr7_2:65292599-65292618 None:intergenic 35.0%
TACATACCAATTCATTGCCA+AGG + chr7_2:65292637-65292656 None:intergenic 35.0%
! GTGAGTTGAAATGGTGTATA+TGG - chr7_2:65292741-65292760 Msa1069600:three_prime_UTR 35.0%
CTCTGAACCAAACATTTGTA+CGG - chr7_2:65293004-65293023 Msa1069600:intron 35.0%
GAAGGTAAAAAGTGAGAAGA+AGG + chr7_2:65293081-65293100 None:intergenic 35.0%
!! CTTTGAAATGCAAACAGTGA+AGG + chr7_2:65293099-65293118 None:intergenic 35.0%
ACAAGAAAACCAAATAACGG+TGG + chr7_2:65293225-65293244 None:intergenic 35.0%
! ATTGATCTTGTTTATGGAGG+AGG - chr7_2:65293302-65293321 Msa1069600:intron 35.0%
GTGTTATATACCCAATGACA+TGG + chr7_2:65293379-65293398 None:intergenic 35.0%
CGCTCAAAATTTGATGTATC+TGG - chr7_2:65293682-65293701 Msa1069600:intron 35.0%
!!! TGGTTGCTTTTTAGACAGAA+TGG - chr7_2:65294064-65294083 Msa1069600:intron 35.0%
CCACAAAACACAACAATAGT+TGG + chr7_2:65294132-65294151 None:intergenic 35.0%
! CCAACTATTGTTGTGTTTTG+TGG - chr7_2:65294129-65294148 Msa1069600:intron 35.0%
! GTTTGAAGCAATGAGAAAAG+AGG + chr7_2:65294374-65294393 None:intergenic 35.0%
TTAAGGGATAAGGTAAGGTA+AGG + chr7_2:65294513-65294532 None:intergenic 35.0%
TGTGTCTCTGATCAACTATA+TGG - chr7_2:65294566-65294585 Msa1069600:intron 35.0%
TCTGATCAACTATATGGTTC+AGG - chr7_2:65294572-65294591 Msa1069600:intron 35.0%
CACTGTTCAAACAAAAGTAG+TGG + chr7_2:65294614-65294633 None:intergenic 35.0%
!! CACTACTTTTGTTTGAACAG+TGG - chr7_2:65294612-65294631 Msa1069600:intron 35.0%
GAAAAGGATGAAACAATGTC+AGG + chr7_2:65294728-65294747 None:intergenic 35.0%
AACTAGTACTAGCAGTAGAA+AGG + chr7_2:65294756-65294775 None:intergenic 35.0%
AAAATTAGTGACAGAGAGAG+TGG - chr7_2:65294825-65294844 Msa1069600:intron 35.0%
! TGGGAATCAATTTTCTTAGG+AGG + chr7_2:65294893-65294912 None:intergenic 35.0%
! CCTTGGGAATCAATTTTCTT+AGG + chr7_2:65294896-65294915 None:intergenic 35.0%
! CCTAAGAAAATTGATTCCCA+AGG - chr7_2:65294893-65294912 Msa1069600:intron 35.0%
TCCAAATGTAGCTATGGATA+TGG + chr7_2:65294965-65294984 None:intergenic 35.0%
TTTGTGTCCAAATGTAGCTA+TGG + chr7_2:65294971-65294990 None:intergenic 35.0%
TTATTTAAATCGTGGTCGCA+TGG - chr7_2:65295021-65295040 Msa1069600:CDS 35.0%
GTTTGATGTAGCTTCAATTG+TGG - chr7_2:65295080-65295099 Msa1069600:intron 35.0%
TCTGAATTAACTTATGCAGG+TGG - chr7_2:65295197-65295216 Msa1069600:intron 35.0%
TTAACTTATGCAGGTGGATA+TGG - chr7_2:65295203-65295222 Msa1069600:intron 35.0%
ACAATTATGTGACGAGCATT+TGG + chr7_2:65295472-65295491 None:intergenic 35.0%
AGAGTTAGTTAAGAAGTTGG+AGG - chr7_2:65295510-65295529 Msa1069600:CDS 35.0%
GAACTTCTTGGATAAACTAG+AGG + chr7_2:65295660-65295679 None:intergenic 35.0%
CTTGAGATGTCATAATCTTG+AGG + chr7_2:65296053-65296072 None:intergenic 35.0%
CTCAAGATTATGACATCTCA+AGG - chr7_2:65296051-65296070 Msa1069600:intron 35.0%
CTATGTTTACTTCACTTGCA+AGG - chr7_2:65296084-65296103 Msa1069600:intron 35.0%
AAAGATGAGGATGACTCTTA+AGG + chr7_2:65296367-65296386 None:intergenic 35.0%
CTTGATCAACACAAAAGATG+AGG + chr7_2:65296380-65296399 None:intergenic 35.0%
! GCTTTGTTGCTACTACTCTT+TGG + chr7_2:65292383-65292402 None:intergenic 40.0%
! TAACAAATGGACTCACGCAA+TGG - chr7_2:65292521-65292540 Msa1069600:three_prime_UTR 40.0%
ACTCACGCAATGGTGAAATA+AGG - chr7_2:65292531-65292550 Msa1069600:three_prime_UTR 40.0%
CAATTCATTGCCAAGGTTCA+TGG + chr7_2:65292630-65292649 None:intergenic 40.0%
CATGAACCTTGGCAATGAAT+TGG - chr7_2:65292628-65292647 Msa1069600:three_prime_UTR 40.0%
TCATAGTCACCACCGTTATT+TGG - chr7_2:65293213-65293232 Msa1069600:intron 40.0%
GTTTCTCAAGCTGTTCATGA+TGG - chr7_2:65293347-65293366 Msa1069600:CDS 40.0%
TACTAGACAAATACCTCTCG+AGG + chr7_2:65293615-65293634 None:intergenic 40.0%
!!! GATGTCATTTTGCAGCTAAC+TGG - chr7_2:65293804-65293823 Msa1069600:intron 40.0%
TGAAACAGTAGGAGAAGTGA+AGG - chr7_2:65293827-65293846 Msa1069600:intron 40.0%
CTGTTGCTGATATGCATCAA+AGG - chr7_2:65293850-65293869 Msa1069600:intron 40.0%
! GATGCTTTTATTGCCTTACC+AGG - chr7_2:65293897-65293916 Msa1069600:intron 40.0%
CCTTTCTTGTCCTCAATGAA+TGG + chr7_2:65294278-65294297 None:intergenic 40.0%
CCATTCATTGAGGACAAGAA+AGG - chr7_2:65294275-65294294 Msa1069600:intron 40.0%
GCCATATCCATAGCTACATT+TGG - chr7_2:65294961-65294980 Msa1069600:CDS 40.0%
! TGTTTGTTAGGTCTATGCGA+CGG + chr7_2:65295114-65295133 None:intergenic 40.0%
ACTTGGAATTCATGACAAGC+CGG - chr7_2:65295265-65295284 Msa1069600:intron 40.0%
GTCATTCATTGACAAAGCTG+TGG - chr7_2:65295429-65295448 Msa1069600:intron 40.0%
ATTGACAAAGCTGTGGAAGA+AGG - chr7_2:65295436-65295455 Msa1069600:intron 40.0%
TTGACAAAGCTGTGGAAGAA+GGG - chr7_2:65295437-65295456 Msa1069600:intron 40.0%
AAACACTGGCAAGAACTTCT+TGG + chr7_2:65295672-65295691 None:intergenic 40.0%
AAGTTCTTGCCAGTGTTTGT+TGG - chr7_2:65295674-65295693 Msa1069600:intron 40.0%
GTAATAGTGCCAACAAACAC+TGG + chr7_2:65295686-65295705 None:intergenic 40.0%
GAGTATGTTCCATGTCATGA+GGG - chr7_2:65295981-65296000 Msa1069600:intron 40.0%
! GCTTTGTTGCTACTACTCTT+TGG + chr7_2:65292383-65292402 None:intergenic 40.0%
! TAACAAATGGACTCACGCAA+TGG - chr7_2:65292521-65292540 Msa1069600:three_prime_UTR 40.0%
ACTCACGCAATGGTGAAATA+AGG - chr7_2:65292531-65292550 Msa1069600:three_prime_UTR 40.0%
CAATTCATTGCCAAGGTTCA+TGG + chr7_2:65292630-65292649 None:intergenic 40.0%
CATGAACCTTGGCAATGAAT+TGG - chr7_2:65292628-65292647 Msa1069600:three_prime_UTR 40.0%
TCATAGTCACCACCGTTATT+TGG - chr7_2:65293213-65293232 Msa1069600:intron 40.0%
GTTTCTCAAGCTGTTCATGA+TGG - chr7_2:65293347-65293366 Msa1069600:CDS 40.0%
TACTAGACAAATACCTCTCG+AGG + chr7_2:65293615-65293634 None:intergenic 40.0%
!!! GATGTCATTTTGCAGCTAAC+TGG - chr7_2:65293804-65293823 Msa1069600:intron 40.0%
TGAAACAGTAGGAGAAGTGA+AGG - chr7_2:65293827-65293846 Msa1069600:intron 40.0%
CTGTTGCTGATATGCATCAA+AGG - chr7_2:65293850-65293869 Msa1069600:intron 40.0%
! GATGCTTTTATTGCCTTACC+AGG - chr7_2:65293897-65293916 Msa1069600:intron 40.0%
CCTTTCTTGTCCTCAATGAA+TGG + chr7_2:65294278-65294297 None:intergenic 40.0%
CCATTCATTGAGGACAAGAA+AGG - chr7_2:65294275-65294294 Msa1069600:intron 40.0%
GCCATATCCATAGCTACATT+TGG - chr7_2:65294961-65294980 Msa1069600:CDS 40.0%
! TGTTTGTTAGGTCTATGCGA+CGG + chr7_2:65295114-65295133 None:intergenic 40.0%
ACTTGGAATTCATGACAAGC+CGG - chr7_2:65295265-65295284 Msa1069600:intron 40.0%
GTCATTCATTGACAAAGCTG+TGG - chr7_2:65295429-65295448 Msa1069600:intron 40.0%
ATTGACAAAGCTGTGGAAGA+AGG - chr7_2:65295436-65295455 Msa1069600:intron 40.0%
TTGACAAAGCTGTGGAAGAA+GGG - chr7_2:65295437-65295456 Msa1069600:intron 40.0%
AAACACTGGCAAGAACTTCT+TGG + chr7_2:65295672-65295691 None:intergenic 40.0%
AAGTTCTTGCCAGTGTTTGT+TGG - chr7_2:65295674-65295693 Msa1069600:intron 40.0%
GTAATAGTGCCAACAAACAC+TGG + chr7_2:65295686-65295705 None:intergenic 40.0%
GAGTATGTTCCATGTCATGA+GGG - chr7_2:65295981-65296000 Msa1069600:intron 40.0%
! GCGTGAGTCCATTTGTTAGT+TGG + chr7_2:65292519-65292538 None:intergenic 45.0%
! GTTTTCTGTGGAAGTAGTCC+TGG - chr7_2:65292578-65292597 Msa1069600:three_prime_UTR 45.0%
! GTTTATGGAGGAGGAAGCAT+TGG - chr7_2:65293311-65293330 Msa1069600:intron 45.0%
TCTCAAGCTGTTCATGATGG+TGG - chr7_2:65293350-65293369 Msa1069600:CDS 45.0%
CAGCTAACTGGTGAAACAGT+AGG - chr7_2:65293816-65293835 Msa1069600:intron 45.0%
GCATCAAAGGAAAGCTGAGA+TGG - chr7_2:65293863-65293882 Msa1069600:intron 45.0%
TGCTAAGTGCTAACCTGGTA+AGG + chr7_2:65293913-65293932 None:intergenic 45.0%
TTGCATGCTAAGTGCTAACC+TGG + chr7_2:65293918-65293937 None:intergenic 45.0%
CTAGTGTGGTCCATTCATTG+AGG - chr7_2:65294265-65294284 Msa1069600:intron 45.0%
GATGAAACAATGTCAGGTGC+AGG + chr7_2:65294722-65294741 None:intergenic 45.0%
ATTAGTGACAGAGAGAGTGG+AGG - chr7_2:65294828-65294847 Msa1069600:intron 45.0%
TATGGATATGGCAGTGTCAG+GGG + chr7_2:65294953-65294972 None:intergenic 45.0%
CTATGGATATGGCAGTGTCA+GGG + chr7_2:65294954-65294973 None:intergenic 45.0%
TTTAAATCGTGGTCGCATGG+CGG - chr7_2:65295024-65295043 Msa1069600:CDS 45.0%
AGGTGGATATGGAACTCTAG+AGG - chr7_2:65295214-65295233 Msa1069600:intron 45.0%
GTCATAACATGGGCTCAACT+TGG - chr7_2:65295248-65295267 Msa1069600:CDS 45.0%
GGAGTATGTTCCATGTCATG+AGG - chr7_2:65295980-65295999 Msa1069600:intron 45.0%
GTCATCGCAACAACGGAAAT+TGG + chr7_2:65296462-65296481 None:intergenic 45.0%
! GCGTGAGTCCATTTGTTAGT+TGG + chr7_2:65292519-65292538 None:intergenic 45.0%
! GTTTTCTGTGGAAGTAGTCC+TGG - chr7_2:65292578-65292597 Msa1069600:three_prime_UTR 45.0%
! GTTTATGGAGGAGGAAGCAT+TGG - chr7_2:65293311-65293330 Msa1069600:intron 45.0%
TCTCAAGCTGTTCATGATGG+TGG - chr7_2:65293350-65293369 Msa1069600:CDS 45.0%
CAGCTAACTGGTGAAACAGT+AGG - chr7_2:65293816-65293835 Msa1069600:intron 45.0%
GCATCAAAGGAAAGCTGAGA+TGG - chr7_2:65293863-65293882 Msa1069600:intron 45.0%
TGCTAAGTGCTAACCTGGTA+AGG + chr7_2:65293913-65293932 None:intergenic 45.0%
TTGCATGCTAAGTGCTAACC+TGG + chr7_2:65293918-65293937 None:intergenic 45.0%
CTAGTGTGGTCCATTCATTG+AGG - chr7_2:65294265-65294284 Msa1069600:intron 45.0%
GATGAAACAATGTCAGGTGC+AGG + chr7_2:65294722-65294741 None:intergenic 45.0%
ATTAGTGACAGAGAGAGTGG+AGG - chr7_2:65294828-65294847 Msa1069600:intron 45.0%
TATGGATATGGCAGTGTCAG+GGG + chr7_2:65294953-65294972 None:intergenic 45.0%
CTATGGATATGGCAGTGTCA+GGG + chr7_2:65294954-65294973 None:intergenic 45.0%
TTTAAATCGTGGTCGCATGG+CGG - chr7_2:65295024-65295043 Msa1069600:CDS 45.0%
AGGTGGATATGGAACTCTAG+AGG - chr7_2:65295214-65295233 Msa1069600:intron 45.0%
GTCATAACATGGGCTCAACT+TGG - chr7_2:65295248-65295267 Msa1069600:CDS 45.0%
GGAGTATGTTCCATGTCATG+AGG - chr7_2:65295980-65295999 Msa1069600:intron 45.0%
GTCATCGCAACAACGGAAAT+TGG + chr7_2:65296462-65296481 None:intergenic 45.0%
GTTCATGGCAGCATCTTGGT+AGG + chr7_2:65292615-65292634 None:intergenic 50.0%
CAAGGTTCATGGCAGCATCT+TGG + chr7_2:65292619-65292638 None:intergenic 50.0%
CAAGATGCTGCCATGAACCT+TGG - chr7_2:65292617-65292636 Msa1069600:three_prime_UTR 50.0%
!! AGGAGGAAGCATTGGTCTCA+TGG - chr7_2:65293319-65293338 Msa1069600:intron 50.0%
!! GGAGGAAGCATTGGTCTCAT+GGG - chr7_2:65293320-65293339 Msa1069600:intron 50.0%
ATGGTGGTCGCCATGTCATT+GGG - chr7_2:65293366-65293385 Msa1069600:CDS 50.0%
TCTCGAGGCATGAGTGTCTT+GGG + chr7_2:65293600-65293619 None:intergenic 50.0%
TGTCAGGTGCAGGTGCTAAT+TGG + chr7_2:65294712-65294731 None:intergenic 50.0%
ATATGGCAGTGTCAGGGGAA+AGG + chr7_2:65294948-65294967 None:intergenic 50.0%
GCTATGGATATGGCAGTGTC+AGG + chr7_2:65294955-65294974 None:intergenic 50.0%
GAAGCAACACCCTCATGACA+TGG + chr7_2:65295993-65296012 None:intergenic 50.0%
!! GTGTTGCTTCCAAGTTGAGC+TGG - chr7_2:65296003-65296022 Msa1069600:intron 50.0%
! TTCCAAGTTGAGCTGGCAGA+TGG - chr7_2:65296010-65296029 Msa1069600:intron 50.0%
TTCCATCTGCCAGCTCAACT+TGG + chr7_2:65296015-65296034 None:intergenic 50.0%
GTTCATGGCAGCATCTTGGT+AGG + chr7_2:65292615-65292634 None:intergenic 50.0%
CAAGGTTCATGGCAGCATCT+TGG + chr7_2:65292619-65292638 None:intergenic 50.0%
CAAGATGCTGCCATGAACCT+TGG - chr7_2:65292617-65292636 Msa1069600:three_prime_UTR 50.0%
!! AGGAGGAAGCATTGGTCTCA+TGG - chr7_2:65293319-65293338 Msa1069600:intron 50.0%
!! GGAGGAAGCATTGGTCTCAT+GGG - chr7_2:65293320-65293339 Msa1069600:intron 50.0%
ATGGTGGTCGCCATGTCATT+GGG - chr7_2:65293366-65293385 Msa1069600:CDS 50.0%
TCTCGAGGCATGAGTGTCTT+GGG + chr7_2:65293600-65293619 None:intergenic 50.0%
TGTCAGGTGCAGGTGCTAAT+TGG + chr7_2:65294712-65294731 None:intergenic 50.0%
ATATGGCAGTGTCAGGGGAA+AGG + chr7_2:65294948-65294967 None:intergenic 50.0%
GCTATGGATATGGCAGTGTC+AGG + chr7_2:65294955-65294974 None:intergenic 50.0%
GAAGCAACACCCTCATGACA+TGG + chr7_2:65295993-65296012 None:intergenic 50.0%
!! GTGTTGCTTCCAAGTTGAGC+TGG - chr7_2:65296003-65296022 Msa1069600:intron 50.0%
! TTCCAAGTTGAGCTGGCAGA+TGG - chr7_2:65296010-65296029 Msa1069600:intron 50.0%
TTCCATCTGCCAGCTCAACT+TGG + chr7_2:65296015-65296034 None:intergenic 50.0%
! GATGGTGGTCGCCATGTCAT+TGG - chr7_2:65293365-65293384 Msa1069600:CDS 55.0%
CTCTCGAGGCATGAGTGTCT+TGG + chr7_2:65293601-65293620 None:intergenic 55.0%
CAAGACACTCATGCCTCGAG+AGG - chr7_2:65293599-65293618 Msa1069600:CDS 55.0%
! GATGGTGGTCGCCATGTCAT+TGG - chr7_2:65293365-65293384 Msa1069600:CDS 55.0%
CTCTCGAGGCATGAGTGTCT+TGG + chr7_2:65293601-65293620 None:intergenic 55.0%
CAAGACACTCATGCCTCGAG+AGG - chr7_2:65293599-65293618 Msa1069600:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 65292379 65296485 65292379 ID=Msa1069600;Name=Msa1069600
chr7_2 mRNA 65292379 65296485 65292379 ID=Msa1069600-mRNA-1;Parent=Msa1069600;Name=Msa1069600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|1|1|1|1|1|7|409|220
chr7_2 exon 65292379 65292883 65292379 ID=Msa1069600-mRNA-1:exon:13758;Parent=Msa1069600-mRNA-1
chr7_2 exon 65293333 65293476 65293333 ID=Msa1069600-mRNA-1:exon:13757;Parent=Msa1069600-mRNA-1
chr7_2 exon 65293578 65293648 65293578 ID=Msa1069600-mRNA-1:exon:13756;Parent=Msa1069600-mRNA-1
chr7_2 exon 65294946 65295045 65294946 ID=Msa1069600-mRNA-1:exon:13755;Parent=Msa1069600-mRNA-1
chr7_2 exon 65295244 65295274 65295244 ID=Msa1069600-mRNA-1:exon:13754;Parent=Msa1069600-mRNA-1
chr7_2 exon 65295477 65295574 65295477 ID=Msa1069600-mRNA-1:exon:13753;Parent=Msa1069600-mRNA-1
chr7_2 exon 65296215 65296485 65296215 ID=Msa1069600-mRNA-1:exon:13752;Parent=Msa1069600-mRNA-1
chr7_2 five_prime_UTR 65296338 65296485 65296338 ID=Msa1069600-mRNA-1:five_prime_utr;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65296215 65296337 65296215 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65295477 65295574 65295477 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65295244 65295274 65295244 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65294946 65295045 65294946 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65293578 65293648 65293578 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65293333 65293476 65293333 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 CDS 65292788 65292883 65292788 ID=Msa1069600-mRNA-1:cds;Parent=Msa1069600-mRNA-1
chr7_2 three_prime_UTR 65292379 65292787 65292379 ID=Msa1069600-mRNA-1:three_prime_utr;Parent=Msa1069600-mRNA-1
Gene Sequence

>Msa1069600

ATGGACTCACGCAATGGTGAAATAAGGCTTTCAAAGTTCAAAAGAATTTGTGTTTTCTGTGGAAGTAGTCCTGGTAAAAAAACTACCTACCAAGATGCTGCCATGAACCTTGGCAATGAATTGGTTTCAAGGAACATTGATCTTGTTTATGGAGGAGGAAGCATTGGTCTCATGGGTTTAGTTTCTCAAGCTGTTCATGATGGTGGTCGCCATGTCATTGGAGTTATTCCCAAGACACTCATGCCTCGAGAGCTAACTGGTGAAACAGTAGGAGAAGTGAAGGCTGTTGCTGATATGCATCAAAGGAAAGCTGAGATGGCTAAGCATTCAGATGCTTTTATTGCCTTACCAGGTGGATATGGAACTCTAGAGGAACTTCTTGAAGTCATAACATGGGCTCAACTTGGAATTCATGACAAGCCGGTTGGATTAGTAAATGTTGATGGATACTTTAACTCCTTGTTGTCATTCATTGACAAAGCTGTGGAAGAAGGGTTTATTAGTCCAAATGCTCGTCACATAATTGTATCAGCACCAACTGCAAAAGAGTTAGTTAAGAAGTTGGAGGAGTATGTTCCATGTCATGAGGGTGTTGCTTCCAAGTTGAGCTGGCAGATGGAACAGCAGCTAGCATACCCTCAAGATTATGACATCTCAAGGTAG

Protein sequence

>Msa1069600

MDSRNGEIRLSKFKRICVFCGSSPGKKTTYQDAAMNLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEEYVPCHEGVASKLSWQMEQQLAYPQDYDISR*