AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119630 MtrunA17_Chr1g0177591 93.554 574 33 2 1 570 1 574 0.0 1098
Msa0119630 MtrunA17_Chr1g0177611 94.831 445 23 0 126 570 1 445 0.0 873
Msa0119630 MtrunA17_Chr2g0331511 73.205 571 130 6 22 569 1 571 0.0 847
Msa0119630 MtrunA17_Chr1g0177631 93.933 445 27 0 126 570 1 445 0.0 836
Msa0119630 MtrunA17_Chr2g0331471 70.017 577 147 6 18 568 61 637 0.0 815
Msa0119630 MtrunA17_Chr2g0331481 70.609 558 143 5 32 568 17 574 0.0 800
Msa0119630 MtrunA17_Chr4g0003761 67.748 555 161 5 33 569 24 578 0.0 751
Msa0119630 MtrunA17_Chr2g0331461 67.442 559 161 4 32 569 17 575 0.0 748
Msa0119630 MtrunA17_Chr2g0331521 57.790 552 214 4 38 570 22 573 0.0 642
Msa0119630 MtrunA17_Chr1g0147631 48.193 581 275 8 9 570 1 574 5.80e-172 500
Msa0119630 MtrunA17_Chr8g0390331 47.232 542 266 8 38 561 15 554 1.50e-171 498
Msa0119630 MtrunA17_Chr1g0157601 45.018 542 276 6 41 563 18 556 1.48e-168 490
Msa0119630 MtrunA17_Chr1g0157611 46.972 545 267 7 41 566 19 560 1.77e-163 477
Msa0119630 MtrunA17_Chr1g0157621 45.057 526 266 7 60 566 2 523 1.26e-150 444
Msa0119630 MtrunA17_Chr5g0415791 34.542 579 339 11 14 560 4 574 3.51e-115 355
Msa0119630 MtrunA17_Chr4g0059971 35.875 577 341 10 11 560 7 581 1.35e-114 353
Msa0119630 MtrunA17_Chr4g0059991 34.722 576 332 13 21 560 3 570 3.05e-112 347
Msa0119630 MtrunA17_Chr5g0422881 35.766 548 321 10 38 560 20 561 2.33e-111 344
Msa0119630 MtrunA17_Chr4g0059981 35.753 551 325 10 37 560 30 578 2.41e-109 340
Msa0119630 MtrunA17_Chr7g0255601 31.952 579 357 13 9 560 1 569 1.54e-105 330
Msa0119630 MtrunA17_Chr7g0255621 32.224 571 348 15 31 570 11 573 8.15e-103 323
Msa0119630 MtrunA17_Chr3g0104011 35.507 552 328 11 32 560 14 560 1.36e-101 318
Msa0119630 MtrunA17_Chr8g0375311 34.615 572 339 15 14 560 18 579 1.43e-100 316
Msa0119630 MtrunA17_Chr8g0375321 34.247 584 340 15 10 562 8 578 8.86e-98 309
Msa0119630 MtrunA17_Chr7g0255611 30.969 578 361 13 23 569 11 581 3.04e-97 308
Msa0119630 MtrunA17_Chr4g0005901 35.359 543 325 11 38 560 32 568 7.98e-97 306
Msa0119630 MtrunA17_Chr8g0375331 33.565 575 343 12 16 562 2 565 8.14e-97 306
Msa0119630 MtrunA17_Chr8g0375341 33.849 582 341 14 9 560 12 579 1.89e-96 305
Msa0119630 MtrunA17_Chr8g0362781 32.668 551 341 11 38 560 30 578 1.08e-95 303
Msa0119630 MtrunA17_Chr8g0375351 33.046 581 347 14 9 560 12 579 1.44e-95 303
Msa0119630 MtrunA17_Chr8g0375291 34.206 573 330 18 14 555 18 574 1.33e-94 300
Msa0119630 MtrunA17_Chr7g0241741 35.130 538 321 11 38 554 22 552 3.88e-94 299
Msa0119630 MtrunA17_Chr8g0362801 35.831 427 257 7 148 560 35 458 7.78e-90 285
Msa0119630 MtrunA17_Chr8g0375361 32.929 577 347 15 9 560 17 578 1.62e-88 285
Msa0119630 MtrunA17_Chr3g0142101 31.349 571 350 15 9 557 10 560 1.98e-87 282
Msa0119630 MtrunA17_Chr4g0060001 30.866 554 355 12 39 569 30 578 1.21e-86 280
Msa0119630 MtrunA17_Chr5g0399061 31.071 560 332 15 38 560 27 569 5.65e-81 265
Msa0119630 MtrunA17_Chr4g0008651 31.185 574 356 15 10 560 9 566 7.17e-81 265
Msa0119630 MtrunA17_Chr3g0142091 30.769 585 362 16 9 570 1 565 2.50e-80 263
Msa0119630 MtrunA17_Chr4g0014871 29.928 558 348 10 22 560 17 550 3.59e-80 262
Msa0119630 MtrunA17_Chr3g0077151 29.964 554 349 11 20 560 13 540 6.43e-80 261
Msa0119630 MtrunA17_Chr7g0240281 29.725 545 356 11 35 554 21 563 2.09e-79 261
Msa0119630 MtrunA17_Chr4g0014781 32.008 528 326 13 49 560 40 550 2.16e-79 260
Msa0119630 MtrunA17_Chr7g0240271 28.877 561 374 11 17 554 3 561 3.85e-79 260
Msa0119630 MtrunA17_Chr3g0112671 29.381 565 375 9 11 560 2 557 1.82e-78 258
Msa0119630 MtrunA17_Chr2g0325951 32.657 542 326 13 40 560 21 544 2.20e-78 257
Msa0119630 MtrunA17_Chr4g0014791 31.499 527 328 9 49 560 40 548 2.26e-78 257
Msa0119630 MtrunA17_Chr7g0240381 30.319 564 360 13 14 560 8 555 2.28e-78 258
Msa0119630 MtrunA17_Chr4g0014801 30.935 556 344 14 22 560 16 548 6.85e-77 253
Msa0119630 MtrunA17_Chr7g0214731 31.664 559 332 15 40 560 63 609 1.92e-76 254
Msa0119630 MtrunA17_Chr4g0014841 30.435 552 350 10 22 560 16 546 2.45e-76 252
Msa0119630 MtrunA17_Chr5g0415841 30.140 428 284 6 145 560 32 456 2.75e-76 249
Msa0119630 MtrunA17_Chr2g0284701 28.595 598 385 13 13 570 2 597 1.08e-75 251
Msa0119630 MtrunA17_Chr2g0325961 33.210 542 324 12 40 560 21 545 1.35e-74 247
Msa0119630 MtrunA17_Chr7g0214461 30.571 543 346 12 39 560 79 611 1.44e-73 246
Msa0119630 MtrunA17_Chr3g0112611 30.329 577 362 13 12 560 2 566 3.79e-73 244
Msa0119630 MtrunA17_Chr2g0326211 32.965 543 323 14 40 560 21 544 5.33e-73 243
Msa0119630 MtrunA17_Chr4g0063591 31.423 541 351 9 38 562 22 558 7.16e-73 243
Msa0119630 MtrunA17_Chr1g0213711 29.705 542 354 10 38 560 21 554 1.98e-72 242
Msa0119630 MtrunA17_Chr7g0261811 29.837 553 343 13 49 570 38 576 1.69e-71 240
Msa0119630 MtrunA17_Chr5g0400371 28.028 578 381 14 11 560 85 655 2.77e-71 241
Msa0119630 MtrunA17_Chr5g0439381 29.228 544 358 9 38 566 28 559 1.20e-70 238
Msa0119630 MtrunA17_Chr8g0353031 31.743 545 333 10 33 554 13 541 1.20e-70 237
Msa0119630 MtrunA17_Chr1g0193391 29.004 562 374 13 23 570 3 553 3.71e-70 237
Msa0119630 MtrunA17_Chr7g0261881 30.168 537 330 14 49 555 38 559 1.06e-69 235
Msa0119630 MtrunA17_Chr7g0271221 29.690 549 362 12 32 566 11 549 1.09e-69 235
Msa0119630 MtrunA17_Chr3g0133341 31.150 565 341 14 33 566 7 554 2.48e-69 234
Msa0119630 MtrunA17_Chr3g0114501 28.870 575 365 17 12 560 2 558 6.02e-69 233
Msa0119630 MtrunA17_Chr4g0056431 29.476 553 347 14 38 557 25 567 7.98e-69 233
Msa0119630 MtrunA17_Chr7g0218851 29.670 546 349 13 39 560 47 581 9.04e-69 233
Msa0119630 MtrunA17_Chr1g0187241 29.656 553 344 13 38 560 26 563 1.10e-67 230
Msa0119630 MtrunA17_Chr5g0399071 29.875 559 346 16 36 560 21 567 2.97e-67 229
Msa0119630 MtrunA17_Chr7g0261771 29.423 537 338 12 49 557 42 565 1.31e-66 227
Msa0119630 MtrunA17_Chr8g0379971 29.881 589 356 17 22 560 7 588 1.47e-65 224
Msa0119630 MtrunA17_Chr7g0261851 28.966 580 366 11 9 560 4 565 2.14e-65 224
Msa0119630 MtrunA17_Chr4g0054891 29.135 532 345 15 50 557 122 645 3.65e-65 224
Msa0119630 MtrunA17_Chr1g0166741 30.286 525 326 15 38 538 27 535 1.21e-64 221
Msa0119630 MtrunA17_Chr4g0014861 30.046 436 280 7 137 560 3 425 1.30e-64 217
Msa0119630 MtrunA17_Chr1g0166791 29.603 554 343 16 38 560 24 561 2.03e-64 221
Msa0119630 MtrunA17_Chr2g0276751 28.938 584 378 15 4 570 9 572 3.27e-64 220
Msa0119630 MtrunA17_Chr8g0379991 31.414 573 323 19 60 565 2 571 6.32e-64 219
Msa0119630 MtrunA17_Chr4g0011471 28.893 533 355 12 49 560 27 556 1.02e-63 219
Msa0119630 MtrunA17_Chr1g0147591 50.505 198 93 4 154 348 5 200 5.06e-63 206
Msa0119630 MtrunA17_Chr7g0240181 30.415 434 284 9 137 554 19 450 5.17e-63 214
Msa0119630 MtrunA17_Chr7g0240131 30.415 434 284 9 137 554 19 450 5.17e-63 214
Msa0119630 MtrunA17_Chr7g0240211 30.415 434 284 9 137 554 19 450 5.50e-63 214
Msa0119630 MtrunA17_Chr7g0261791 28.966 580 358 13 8 557 9 564 8.67e-63 217
Msa0119630 MtrunA17_Chr7g0235521 30.415 434 284 9 137 554 19 450 9.06e-63 214
Msa0119630 MtrunA17_Chr1g0166771 29.423 503 315 15 60 538 13 499 1.54e-62 215
Msa0119630 MtrunA17_Chr3g0082631 32.110 436 252 12 152 557 32 453 6.26e-62 211
Msa0119630 MtrunA17_Chr1g0166711 29.128 539 342 12 49 560 36 561 1.04e-59 208
Msa0119630 MtrunA17_Chr7g0217461 28.893 533 337 15 38 538 24 546 2.77e-59 207
Msa0119630 MtrunA17_Chr5g0415961 28.114 562 341 15 40 559 26 566 4.77e-58 204
Msa0119630 MtrunA17_Chr7g0240151 29.561 433 271 9 137 554 19 432 1.04e-57 200
Msa0119630 MtrunA17_Chr8g0362711 27.728 559 346 15 40 559 26 565 5.61e-55 195
Msa0119630 MtrunA17_Chr4g0011041 26.355 535 366 14 50 560 48 578 2.20e-54 194
Msa0119630 MtrunA17_Chr4g0069581 28.817 524 341 15 56 560 4 514 8.24e-54 192
Msa0119630 MtrunA17_Chr6g0451841 27.632 532 330 14 63 563 30 537 4.37e-52 186
Msa0119630 MtrunA17_Chr7g0261661 28.873 426 277 8 155 565 41 455 4.70e-52 186
Msa0119630 MtrunA17_Chr1g0166731 28.200 461 295 11 125 560 9 458 6.38e-47 171
Msa0119630 MtrunA17_Chr3g0112631 33.212 274 165 6 298 560 3 269 1.03e-45 162
Msa0119630 MtrunA17_Chr3g0142121 34.483 261 160 5 299 557 11 262 9.15e-43 154
Msa0119630 MtrunA17_Chr4g0060071 32.609 276 161 8 294 559 32 292 1.01e-38 144
Msa0119630 MtrunA17_Chr7g0261751 26.682 446 277 12 49 447 42 484 2.39e-38 148
Msa0119630 MtrunA17_Chr7g0261731 28.923 325 199 9 38 343 31 342 2.75e-34 133
Msa0119630 MtrunA17_Chr3g0142111 31.930 285 173 9 38 305 46 326 1.05e-32 128
Msa0119630 MtrunA17_Chr7g0234381 25.694 432 286 10 135 560 16 418 9.02e-32 127
Msa0119630 MtrunA17_Chr7g0234181 25.799 438 278 12 135 560 11 413 1.02e-29 121
Msa0119630 MtrunA17_Chr7g0234151 25.231 432 288 10 135 560 16 418 8.49e-28 115
Msa0119630 MtrunA17_Chr1g0177601 91.228 57 5 0 68 124 1 57 1.52e-27 105
Msa0119630 MtrunA17_Chr1g0177621 91.228 57 5 0 68 124 1 57 1.52e-27 105
Msa0119630 MtrunA17_Chr7g0261721 30.256 195 129 1 373 560 4 198 1.71e-25 105
Msa0119630 MtrunA17_Chr2g0326221 29.825 228 136 5 335 560 15 220 2.26e-25 104
Msa0119630 MtrunA17_Chr8g0382591 41.284 109 58 4 298 402 3 109 1.43e-17 79.7
Msa0119630 MtrunA17_Chr3g0112651 28.934 197 128 5 113 299 9 203 2.15e-14 72.4
Msa0119630 MtrunA17_Chr1g0147581 34.234 111 59 2 434 536 11 115 5.04e-12 63.2
Msa0119630 MtrunA17_Chr7g0261831 28.649 185 106 5 260 428 3 177 3.94e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119630 AT1G52190.1 49.827 578 259 8 15 567 2 573 0.0 590
Msa0119630 AT3G16180.1 51.220 574 253 11 23 570 3 575 0.0 582
Msa0119630 AT5G11570.1 38.806 536 241 12 41 561 14 477 5.91e-111 340
Msa0119630 AT1G69870.1 33.929 560 340 11 38 570 49 605 1.53e-110 343
Msa0119630 AT1G68570.1 35.334 583 343 11 15 570 2 577 1.60e-108 337
Msa0119630 AT1G62200.1 37.407 540 309 12 38 556 50 581 2.28e-108 337
Msa0119630 AT2G02040.1 35.584 548 320 14 38 560 39 578 1.13e-103 325
Msa0119630 AT1G62200.2 36.155 567 308 13 38 556 50 610 3.55e-103 324
Msa0119630 AT1G62200.3 36.155 567 308 13 38 556 64 624 4.24e-103 325
Msa0119630 AT1G27080.1 32.554 556 346 12 37 570 11 559 2.05e-102 321
Msa0119630 AT5G62680.1 33.784 592 346 13 8 560 5 589 8.23e-100 315
Msa0119630 AT1G18880.1 32.904 544 337 8 43 560 22 563 9.54e-99 312
Msa0119630 AT1G68570.2 34.982 546 325 10 52 570 5 547 9.34e-98 308
Msa0119630 AT3G54140.1 34.735 547 325 14 38 560 22 560 1.01e-97 308
Msa0119630 AT3G54140.2 34.735 547 325 14 38 560 22 560 1.01e-97 308
Msa0119630 AT3G47960.1 33.752 557 332 12 36 560 54 605 5.56e-97 308
Msa0119630 AT1G27080.2 32.443 524 325 12 69 570 1 517 6.22e-94 298
Msa0119630 AT5G01180.2 32.836 536 337 8 38 554 23 554 3.45e-92 294
Msa0119630 AT5G01180.3 32.836 536 337 8 38 554 23 554 3.45e-92 294
Msa0119630 AT5G01180.1 32.836 536 337 8 38 554 23 554 3.45e-92 294
Msa0119630 AT5G28470.2 31.844 537 340 12 38 553 15 546 1.34e-89 287
Msa0119630 AT3G45650.1 33.394 545 323 11 35 560 17 540 3.96e-87 281
Msa0119630 AT2G02020.1 32.902 541 305 13 38 560 40 540 7.59e-87 280
Msa0119630 AT5G28470.1 31.657 537 339 13 38 553 15 544 1.17e-86 280
Msa0119630 AT3G45650.2 31.874 571 323 12 35 560 17 566 2.26e-81 266
Msa0119630 AT3G45660.1 31.550 542 329 12 39 560 20 539 2.95e-80 263
Msa0119630 AT3G45660.3 31.550 542 329 12 39 560 20 539 2.95e-80 263
Msa0119630 AT3G45660.2 31.550 542 329 12 39 560 41 560 5.22e-80 263
Msa0119630 AT3G45710.1 30.939 543 341 11 35 560 16 541 2.22e-79 260
Msa0119630 AT2G26690.1 32.037 540 348 10 38 562 22 557 5.25e-78 257
Msa0119630 AT3G54450.1 30.669 538 338 9 38 554 10 533 3.10e-77 254
Msa0119630 AT3G45680.1 32.491 554 336 13 23 560 8 539 3.37e-77 254
Msa0119630 AT3G45720.1 31.099 537 336 12 40 560 19 537 6.54e-77 254
Msa0119630 AT1G69860.1 31.801 544 337 13 38 560 16 546 6.95e-76 251
Msa0119630 AT1G72125.1 31.638 531 329 10 49 560 38 553 1.53e-75 250
Msa0119630 AT2G26690.2 32.061 524 337 10 54 562 5 524 2.86e-75 249
Msa0119630 AT2G26690.3 32.364 516 330 10 62 562 1 512 1.63e-74 247
Msa0119630 AT5G13400.1 30.660 561 353 9 40 570 64 618 1.89e-74 249
Msa0119630 AT3G45700.1 30.530 547 339 12 31 560 7 529 2.88e-74 246
Msa0119630 AT3G53960.1 29.391 575 375 14 7 560 6 570 7.99e-74 247
Msa0119630 AT2G37900.1 28.774 563 371 15 11 557 12 560 8.60e-73 243
Msa0119630 AT1G32450.1 27.835 582 386 13 12 562 5 583 2.72e-70 238
Msa0119630 AT1G22540.1 30.882 544 333 11 38 560 28 549 3.55e-70 236
Msa0119630 AT1G72130.1 30.556 540 326 14 38 560 23 530 5.65e-70 235
Msa0119630 AT2G37900.2 29.668 482 314 13 91 557 10 481 2.49e-69 232
Msa0119630 AT2G02020.2 30.556 540 298 15 38 560 40 519 2.62e-69 233
Msa0119630 AT1G22570.1 30.989 526 318 11 42 541 32 538 4.03e-69 233
Msa0119630 AT1G59740.1 29.597 571 368 14 10 557 12 571 8.85e-69 233
Msa0119630 AT5G46050.1 29.443 557 342 14 12 538 4 539 1.20e-68 233
Msa0119630 AT1G12110.1 30.325 554 343 13 38 560 25 566 1.10e-67 230
Msa0119630 AT1G22550.1 29.412 544 340 10 42 560 32 556 1.37e-67 229
Msa0119630 AT1G22570.2 30.739 514 311 11 54 541 7 501 4.20e-67 227
Msa0119630 AT1G72140.1 28.893 578 335 15 18 560 15 551 7.51e-67 227
Msa0119630 AT1G33440.1 29.562 548 351 11 36 560 32 567 8.89e-66 225
Msa0119630 AT4G21680.1 27.920 548 359 13 42 560 30 570 1.01e-65 225
Msa0119630 AT3G21670.1 28.785 535 356 9 37 555 25 550 1.10e-65 225
Msa0119630 AT5G46040.1 30.250 519 318 12 49 538 36 539 1.33e-65 224
Msa0119630 AT1G27040.1 29.927 548 337 12 40 559 27 555 2.79e-65 223
Msa0119630 AT1G27040.2 29.927 548 337 12 40 559 23 551 3.84e-65 223
Msa0119630 AT1G72120.1 29.260 581 358 13 1 560 1 549 8.60e-65 221
Msa0119630 AT5G14940.1 29.834 543 342 13 38 555 5 533 3.38e-63 217
Msa0119630 AT2G40460.1 28.205 546 349 13 49 570 33 559 4.44e-62 215
Msa0119630 AT1G27040.3 29.851 536 329 12 52 559 7 523 2.22e-61 212
Msa0119630 AT5G19640.1 28.782 542 346 15 42 562 61 583 6.58e-61 212
Msa0119630 AT5G46050.2 30.769 416 260 9 139 538 24 427 5.23e-57 198
Msa0119630 AT5G62730.1 28.675 551 335 15 40 559 56 579 3.60e-56 199
Msa0119630 AT3G01350.1 27.568 555 356 14 38 558 5 547 7.80e-56 197
Msa0119630 AT3G45690.1 28.835 541 311 16 36 560 14 496 1.40e-55 196
Msa0119630 AT1G72130.2 31.106 434 257 11 142 560 6 412 7.37e-54 189
Msa0119630 AT1G72130.3 31.106 434 257 11 142 560 6 412 7.37e-54 189
Msa0119630 AT5G62730.2 28.336 547 334 15 44 559 1 520 9.98e-54 191
Msa0119630 AT1G69850.1 27.041 588 368 18 17 559 2 573 9.64e-52 187
Msa0119630 AT3G25260.1 25.000 560 361 14 9 559 3 512 2.54e-51 184
Msa0119630 AT3G25280.1 24.851 503 336 12 67 559 48 518 8.23e-40 152
Msa0119630 AT2G38100.2 25.049 515 332 22 68 560 2 484 7.72e-24 105
Msa0119630 AT2G38100.3 24.427 524 324 21 68 560 24 506 1.11e-23 105
Msa0119630 AT2G38100.1 24.427 524 324 21 68 560 18 500 1.13e-23 105

Find 132 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTTGCTGCTTCGCTTTC+TGG 0.093260 1_3:-43761607 Msa0119630:CDS
CTGTATAATAAAACTCATTT+TGG 0.135749 1_3:+43761650 None:intergenic
GAACAAAGCTTGTGTTATTA+AGG 0.192435 1_3:-43762172 Msa0119630:CDS
TCCAAGACCCTATTGTTATT+AGG 0.209799 1_3:+43762600 None:intergenic
CTAAATAATAGAGTATATTA+AGG 0.236749 1_3:+43761431 None:intergenic
CCAAGACCCTATTGTTATTA+GGG 0.240592 1_3:+43762601 None:intergenic
AAGAGTTAAGTAAGGATTAA+TGG 0.259384 1_3:-43761378 Msa0119630:exon
TTCTTTGCACTGATCGTAAC+TGG 0.278436 1_3:+43761841 None:intergenic
AGGTTCTGCTGTCAGTTTCC+TGG 0.294557 1_3:-43763621 Msa0119630:intron
GTATATATCCAAGATCATTT+TGG 0.295506 1_3:-43762513 Msa0119630:CDS
TTAGTTTGCAGTTGGGCTTA+TGG 0.299490 1_3:-43761412 Msa0119630:CDS
TTTGGTTGGAAAATTGGTTT+TGG 0.301389 1_3:-43762495 Msa0119630:CDS
AAATGCGAACGATGGAGTTT+TGG 0.301463 1_3:-43761743 Msa0119630:CDS
GCTGCTTCGCTTTCTGGATT+GGG 0.319848 1_3:-43761601 Msa0119630:CDS
TTGTGAGAGTTATTCCATTA+TGG 0.321111 1_3:-43762062 Msa0119630:CDS
ATCACTATGCCTTTCATCAT+TGG 0.322422 1_3:-43767038 Msa0119630:intron
TGCTGCTTCGCTTTCTGGAT+TGG 0.335882 1_3:-43761602 Msa0119630:CDS
AAGATAACCCTAATAACAAT+AGG 0.342050 1_3:-43762608 Msa0119630:CDS
ATATAGGTACGGTAATTATA+TGG 0.342184 1_3:-43761918 Msa0119630:CDS
ATCTACTGTGCATAGATTCC+AGG 0.353747 1_3:+43762107 None:intergenic
AAATACTCTTGGCTTATAAC+TGG 0.364606 1_3:-43761463 Msa0119630:CDS
TTTAGTCTCATGTCAATTGC+AGG 0.365344 1_3:-43762681 Msa0119630:CDS
AACAAGGAAGTTCAATATTC+AGG 0.367984 1_3:-43767104 Msa0119630:CDS
TAGCTAAAAGTGCATATATA+TGG 0.368249 1_3:+43767304 None:intergenic
AGACATAGTCATAGTAGAAA+TGG 0.375055 1_3:+43767181 None:intergenic
CCTTTAGCATCGAAGATAAG+AGG 0.383147 1_3:-43761868 Msa0119630:CDS
AACCACAGGCATGAACTTGC+TGG 0.394025 1_3:+43763694 None:intergenic
AAATGCAATAGTTTGGAGTT+TGG 0.394895 1_3:+43767246 None:intergenic
CGATTCTTAAGTGTTGGATT+AGG 0.396315 1_3:-43763641 Msa0119630:CDS
GTTTCATGTTCCATGGCATT+TGG 0.404377 1_3:-43762651 Msa0119630:CDS
ATCAAATACAATATCATGTT+GGG 0.404738 1_3:+43763776 None:intergenic
GCAAAGAAAAGAATGGGAAT+TGG 0.406768 1_3:-43761826 Msa0119630:CDS
TTTGTTGCAGATTCTTATCT+CGG 0.407995 1_3:-43763665 Msa0119630:CDS
CTCGGTCGATTCTTAAGTGT+TGG 0.411486 1_3:-43763647 Msa0119630:CDS
CCTCTTATCTTCGATGCTAA+AGG 0.412800 1_3:+43761868 None:intergenic
GGACCTTTCAAGCTTCATCT+TGG 0.414516 1_3:-43763752 Msa0119630:CDS
AATCACTTTGTGTGTTCAAA+TGG 0.418237 1_3:+43767271 None:intergenic
CCCTAATAACAATAGGGTCT+TGG 0.418911 1_3:-43762601 Msa0119630:CDS
TCACAAATGAGTAGGCTTGA+TGG 0.421746 1_3:-43761232 Msa0119630:three_prime_UTR
CTATTATTTAGTTTGCAGTT+GGG 0.422804 1_3:-43761419 Msa0119630:CDS
TCAATATTCAGGTGGTGAAA+TGG 0.423861 1_3:-43767093 Msa0119630:CDS
CAACATGATATTGTATTTGA+TGG 0.424400 1_3:-43763774 Msa0119630:CDS
TCTTTGAGCGTTATCAATAT+AGG 0.428181 1_3:-43761934 Msa0119630:CDS
TCTGGATTGGGAATGGCTGC+AGG 0.429137 1_3:-43761589 Msa0119630:CDS
GCTTGTGAAATGCAATAGTT+TGG 0.430241 1_3:+43767239 None:intergenic
TCTGAAGCAGTCAATTTCAT+AGG 0.436089 1_3:-43761673 Msa0119630:CDS
GCACCTCAACTTTGTCTAGC+TGG 0.440258 1_3:-43761700 Msa0119630:CDS
TCTATTATTTAGTTTGCAGT+TGG 0.444992 1_3:-43761420 Msa0119630:CDS
ATGATCCCACTAGACCATAA+TGG 0.450318 1_3:+43762048 None:intergenic
TTCGCTTTCTGGATTGGGAA+TGG 0.452382 1_3:-43761596 Msa0119630:CDS
TGCTGGCTGCAGCAGATAAG+AGG 0.457100 1_3:+43763711 None:intergenic
TCTTGATCTTCTTGTTGCAA+TGG 0.457986 1_3:+43767149 None:intergenic
ATCACCAACATCATGGGAAA+TGG 0.460646 1_3:-43762721 Msa0119630:CDS
GGAGGTGATATGTCTGTTCA+AGG 0.462389 1_3:+43761978 None:intergenic
TGCAGTTGAAGAGTTAAGTA+AGG 0.466329 1_3:-43761386 Msa0119630:CDS
ATCAGTGCAAAGAAAAGAAT+GGG 0.469148 1_3:-43761832 Msa0119630:CDS
AGATAACCCTAATAACAATA+GGG 0.471415 1_3:-43762607 Msa0119630:CDS
CGCTGGAACTTCAAAGTTGG+AGG 0.472600 1_3:+43761960 None:intergenic
AGGCCACCCTTGCGTCTTTG+TGG 0.477264 1_3:+43767062 None:intergenic
GATCAGTGCAAAGAAAAGAA+TGG 0.478546 1_3:-43761833 Msa0119630:CDS
TAAATAATAGAGTATATTAA+GGG 0.480488 1_3:+43761432 None:intergenic
AATGAAAAGTCGCAACTTCA+AGG 0.483351 1_3:-43761003 Msa0119630:three_prime_UTR
ACCTACCTTAGTTTATCAGT+TGG 0.486210 1_3:+43762270 None:intergenic
AGTAAGGATTAATGGCTTTG+TGG 0.486916 1_3:-43761370 Msa0119630:exon
ACTTCAAGAGGAGGAAAAGA+TGG 0.489744 1_3:-43761523 Msa0119630:CDS
GCGATCAATCACCAACATCA+TGG 0.496498 1_3:-43762728 Msa0119630:CDS
CTCATGTCAATTGCAGGTGC+TGG 0.499541 1_3:-43762675 Msa0119630:CDS
TGCTGGTGTTTCATGTTCCA+TGG 0.501696 1_3:-43762658 Msa0119630:CDS
TATCTTTATATATTATAACT+TGG 0.502695 1_3:+43761177 None:intergenic
GGGAATGGCTGCAGGAAGCT+TGG 0.503502 1_3:-43761581 Msa0119630:CDS
TCAGACAAAGAAAATTCAGA+TGG 0.509895 1_3:-43761204 Msa0119630:three_prime_UTR
CTTGGCAATACTGCAAGCTT+AGG 0.510734 1_3:-43763806 Msa0119630:CDS
ATGATGACCCTTAGCATTGG+AGG 0.512129 1_3:-43762027 Msa0119630:CDS
TCCCGCTGGAACTTCAAAGT+TGG 0.516812 1_3:+43761957 None:intergenic
TGATGAAAGGCATAGTGATA+AGG 0.520223 1_3:+43767042 None:intergenic
CATCAAATACAATATCATGT+TGG 0.523970 1_3:+43763775 None:intergenic
TTACTTAACTCTTCAACTGC+AGG 0.526205 1_3:+43761388 None:intergenic
GCAACACTAGACATAGTACT+TGG 0.530889 1_3:+43761622 None:intergenic
AACATGATATTGTATTTGAT+GGG 0.530924 1_3:-43763773 Msa0119630:CDS
TCTCCAAGATGAAGCTTGAA+AGG 0.532522 1_3:+43763749 None:intergenic
GTTATTCCATTATGGTCTAG+TGG 0.537272 1_3:-43762054 Msa0119630:CDS
CGCAAAACTAGCGAACAAGT+TGG 0.540410 1_3:+43762392 None:intergenic
CGATCAATCACCAACATCAT+GGG 0.540764 1_3:-43762727 Msa0119630:CDS
AAAATGAGCCTCCAATGCTA+AGG 0.543292 1_3:+43762019 None:intergenic
ATGGTTCAAGAATAAACCCC+TGG 0.543754 1_3:-43762125 Msa0119630:CDS
GTGATTGTTTGCAGCAAATG+AGG 0.544320 1_3:-43763831 Msa0119630:intron
TGCAATTGACATGAGACTAA+AGG 0.550395 1_3:+43762683 None:intergenic
TGGTTCCAACTGATAAACTA+AGG 0.551260 1_3:-43762275 Msa0119630:intron
CTTTAGCATCGAAGATAAGA+GGG 0.558229 1_3:-43761867 Msa0119630:CDS
TTTGCAGCAAATGAGGCACT+TGG 0.561736 1_3:-43763824 Msa0119630:intron
ATCATGATGACCCTTAGCAT+TGG 0.562857 1_3:-43762030 Msa0119630:CDS
TTATTCCATTATGGTCTAGT+GGG 0.564458 1_3:-43762053 Msa0119630:CDS
TCTACTGTGCATAGATTCCA+GGG 0.566589 1_3:+43762108 None:intergenic
GGTGATTGATCGCCTTCCGT+TGG 0.568053 1_3:+43762738 None:intergenic
TTGTTGTGATGGTAAAATTG+AGG 0.569745 1_3:+43762312 None:intergenic
GAACAAGATATAGCATGTGA+TGG 0.572383 1_3:-43762144 Msa0119630:CDS
ATTTAAGATACTCGAACGCA+TGG 0.573198 1_3:+43761100 None:intergenic
TTCTCAACCACAAAGACGCA+AGG 0.576475 1_3:-43767069 Msa0119630:CDS
AGCAAGTTCATGCCTGTGGT+TGG 0.578750 1_3:-43763692 Msa0119630:CDS
GAGCGTTATCAATATAGGTA+CGG 0.578923 1_3:-43761929 Msa0119630:CDS
TCCAACTTTGAAGTTCCAGC+GGG 0.578991 1_3:-43761958 Msa0119630:CDS
GATTTCTGATGATATTAACA+AGG 0.586027 1_3:-43761497 Msa0119630:CDS
TTGGTCTGCACCAAATGCCA+TGG 0.588107 1_3:+43762641 None:intergenic
ATTGCCATTTCCCATGATGT+TGG 0.593954 1_3:+43762717 None:intergenic
GATTTGAGTCCTTGTTGTGA+TGG 0.596972 1_3:+43762301 None:intergenic
TACAGGGAATGGCATTGTTG+TGG 0.598433 1_3:-43762779 Msa0119630:intron
CAGACAAAGAAAATTCAGAT+GGG 0.600439 1_3:-43761203 Msa0119630:three_prime_UTR
GTAGAAAACACTACTTCAAG+AGG 0.601842 1_3:-43761535 Msa0119630:CDS
GATAACTTACCAATGATGAA+AGG 0.603026 1_3:+43767029 None:intergenic
CTTCAAGAGGAGGAAAAGAT+GGG 0.604855 1_3:-43761522 Msa0119630:CDS
ATAACGCTCAAAGATCCCGC+TGG 0.608804 1_3:+43761943 None:intergenic
AGGAGAAGAAATGCGAACGA+TGG 0.609047 1_3:-43761751 Msa0119630:CDS
GCAACAAAAGCACCAACCAC+AGG 0.611443 1_3:+43763680 None:intergenic
CTCCAACTTTGAAGTTCCAG+CGG 0.612248 1_3:-43761959 Msa0119630:CDS
AAATGAGCCTCCAATGCTAA+GGG 0.618035 1_3:+43762020 None:intergenic
AGCCAGCAAGTTCATGCCTG+TGG 0.625089 1_3:-43763696 Msa0119630:CDS
ACTAGATTCTTATTACAACA+TGG 0.636227 1_3:+43761150 None:intergenic
GAAAACACTACTTCAAGAGG+AGG 0.636406 1_3:-43761532 Msa0119630:CDS
AACAGCAATGATCAAACCAA+CGG 0.645820 1_3:-43762754 Msa0119630:CDS
GCAATGATCAAACCAACGGA+AGG 0.652956 1_3:-43762750 Msa0119630:CDS
ATTTCTGATGATATTAACAA+GGG 0.659432 1_3:-43761496 Msa0119630:CDS
CAACCACAAAGACGCAAGGG+TGG 0.668240 1_3:-43767065 Msa0119630:CDS
CAACAAGGACTCAAATCTCG+TGG 0.669262 1_3:-43762295 Msa0119630:CDS
AAGGAAGTTCAATATTCAGG+TGG 0.669732 1_3:-43767101 Msa0119630:CDS
TAATGGAATAACTCTCACAA+TGG 0.677324 1_3:+43762065 None:intergenic
CAAGAGGAGGAAAAGATGGG+TGG 0.679323 1_3:-43761519 Msa0119630:CDS
TCTCAACCACAAAGACGCAA+GGG 0.686419 1_3:-43767068 Msa0119630:CDS
ATACCAGCTAGACAAAGTTG+AGG 0.689573 1_3:+43761697 None:intergenic
CTACTGTGCATAGATTCCAG+GGG 0.694955 1_3:+43762109 None:intergenic
AGCAAGAAAGAATAACAGTG+TGG 0.706784 1_3:+43762446 None:intergenic
GAAAAGTCGCAACTTCAAGG+AGG 0.727652 1_3:-43761000 Msa0119630:three_prime_UTR
ATGCTAAAGGAATAAGAACG+CGG 0.758334 1_3:+43761881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATAGATTTTATAGT+GGG + chr1_3:43761711-43761730 None:intergenic 10.0%
!! TATAAAATCTATTTATTTGT+GGG - chr1_3:43761713-43761732 Msa0119630:CDS 10.0%
!! AAGAAAAAAATTATAATATG+AGG + chr1_3:43761749-43761768 None:intergenic 10.0%
!!! CTTTTAATGAAAAATAAAAA+TGG + chr1_3:43763080-43763099 None:intergenic 10.0%
!! ATTTATATCTTATTCAAAAT+AGG + chr1_3:43763237-43763256 None:intergenic 10.0%
!!! AATTTTGTTGTATAATAATA+AGG - chr1_3:43764475-43764494 Msa0119630:intron 10.0%
!!! AAGTTTTAGTTTTTATTTTT+GGG - chr1_3:43765266-43765285 Msa0119630:intron 10.0%
!! TAAATAATAGAGTATATTAA+GGG + chr1_3:43766910-43766929 None:intergenic 10.0%
!! TATCTTTATATATTATAACT+TGG + chr1_3:43767165-43767184 None:intergenic 10.0%
!!! AAAAACATAGAATATTTTGT+CGG + chr1_3:43761378-43761397 None:intergenic 15.0%
!!! AATTAACTAATGAAATTTTC+CGG - chr1_3:43761504-43761523 Msa0119630:CDS 15.0%
!!! AAATAATTCTTTTCAATTAG+GGG + chr1_3:43761679-43761698 None:intergenic 15.0%
!!! CAAATAATTCTTTTCAATTA+GGG + chr1_3:43761680-43761699 None:intergenic 15.0%
!! CTAATTGAAAAGAATTATTT+GGG - chr1_3:43761679-43761698 Msa0119630:CDS 15.0%
!! TAATTGAAAAGAATTATTTG+GGG - chr1_3:43761680-43761699 Msa0119630:CDS 15.0%
!!! CAAATAAATAGATTTTATAG+TGG + chr1_3:43761712-43761731 None:intergenic 15.0%
!! CTATAAAATCTATTTATTTG+TGG - chr1_3:43761712-43761731 Msa0119630:CDS 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr1_3:43762033-43762052 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr1_3:43762033-43762052 None:intergenic 15.0%
!! ATATAAATTCTCTATATTGA+CGG - chr1_3:43763635-43763654 Msa0119630:CDS 15.0%
!! CATTAACTTATCATATTATT+GGG + chr1_3:43764264-43764283 None:intergenic 15.0%
!! TCATTAACTTATCATATTAT+TGG + chr1_3:43764265-43764284 None:intergenic 15.0%
!!! GAAGTTTTAGTTTTTATTTT+TGG - chr1_3:43765265-43765284 Msa0119630:intron 15.0%
!!! ATAAATTTTGGTGAAATATT+CGG - chr1_3:43766118-43766137 Msa0119630:intron 15.0%
!! CTAAATAATAGAGTATATTA+AGG + chr1_3:43766911-43766930 None:intergenic 15.0%
!! TACAAATCAAAAAATCAACA+AGG - chr1_3:43761219-43761238 Msa0119630:three_prime_UTR 20.0%
!!! TGTTTTTTTTCTTTTTTGAG+AGG - chr1_3:43761391-43761410 Msa0119630:CDS 20.0%
!!! AATAATTCTTTTCAATTAGG+GGG + chr1_3:43761678-43761697 None:intergenic 20.0%
!!! CCAAATAATTCTTTTCAATT+AGG + chr1_3:43761681-43761700 None:intergenic 20.0%
!! CCTAATTGAAAAGAATTATT+TGG - chr1_3:43761678-43761697 Msa0119630:CDS 20.0%
!!! TTATAATATGAGGCTTTATT+AGG + chr1_3:43761739-43761758 None:intergenic 20.0%
!!! AATTAGTTGTTTTGAATAAG+AGG + chr1_3:43761851-43761870 None:intergenic 20.0%
!! TTGAATCTAAACTGTTAATT+TGG - chr1_3:43762876-43762895 Msa0119630:intron 20.0%
!! ATATCTTATTCAAAATAGGT+TGG + chr1_3:43763233-43763252 None:intergenic 20.0%
!! ATAGAGAAAAGTTCAAAATT+AGG - chr1_3:43763437-43763456 Msa0119630:intron 20.0%
!! ATATATAAGCCTATAATTGT+TGG - chr1_3:43763736-43763755 Msa0119630:CDS 20.0%
!! AAGAAAATCAAAAACAAAGT+GGG - chr1_3:43763795-43763814 Msa0119630:CDS 20.0%
!! ATCAAATACAATATCATGTT+GGG + chr1_3:43764566-43764585 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG - chr1_3:43764566-43764585 Msa0119630:intron 20.0%
!! TTCATAGGTAAATAGTTTAT+TGG + chr1_3:43764938-43764957 None:intergenic 20.0%
!!! ACAAACATAAGTTTTTTCAT+TGG - chr1_3:43765214-43765233 Msa0119630:intron 20.0%
!!! GGTTATCTTTTATATTTACT+TGG + chr1_3:43765720-43765739 None:intergenic 20.0%
!!! TTTTGAATCTTTACATAAAG+AGG + chr1_3:43765922-43765941 None:intergenic 20.0%
!!! TAAAATTGAGGTGAATTTTT+AGG + chr1_3:43766018-43766037 None:intergenic 20.0%
!!! TTTGCATATTCCATAAATTT+TGG - chr1_3:43766106-43766125 Msa0119630:intron 20.0%
!! GAATATTTCACCAAAATTTA+TGG + chr1_3:43766119-43766138 None:intergenic 20.0%
!!! CTGTATAATAAAACTCATTT+TGG + chr1_3:43766692-43766711 None:intergenic 20.0%
!! ATTTCTGATGATATTAACAA+GGG - chr1_3:43766843-43766862 Msa0119630:intron 20.0%
!! TAGCTAAAAGTGCATATATA+TGG + chr1_3:43761038-43761057 None:intergenic 25.0%
! ATCTATCTATCTATCTATTC+TGG - chr1_3:43761330-43761349 Msa0119630:three_prime_UTR 25.0%
! TGATAAAGATATATACCAAC+CGG + chr1_3:43761526-43761545 None:intergenic 25.0%
!! AAACTGTTAATTTGGATTGA+AGG - chr1_3:43762884-43762903 Msa0119630:intron 25.0%
!!! TTCGTTTTGATCGTATATAA+AGG + chr1_3:43762974-43762993 None:intergenic 25.0%
!!! TAATTTTGAGTTGGAAAAGT+AGG + chr1_3:43763335-43763354 None:intergenic 25.0%
!!! CAATTGACTTTTGATCAATT+TGG - chr1_3:43763412-43763431 Msa0119630:intron 25.0%
!! AATCTAGAAATTTTCAGTAG+TGG - chr1_3:43763480-43763499 Msa0119630:intron 25.0%
!! ATCTAGAAATTTTCAGTAGT+GGG - chr1_3:43763481-43763500 Msa0119630:intron 25.0%
!! ATCAATAGTGTCTTATTCAT+GGG + chr1_3:43763702-43763721 None:intergenic 25.0%
!! TATCAATAGTGTCTTATTCA+TGG + chr1_3:43763703-43763722 None:intergenic 25.0%
!!! CACTTTGTTTTTGATTTTCT+TGG + chr1_3:43763796-43763815 None:intergenic 25.0%
! CAAGAAAATCAAAAACAAAG+TGG - chr1_3:43763794-43763813 Msa0119630:CDS 25.0%
! AGAAAATCAAAAACAAAGTG+GGG - chr1_3:43763796-43763815 Msa0119630:CDS 25.0%
!! TTTTTCCAATCATGATATCA+AGG - chr1_3:43763884-43763903 Msa0119630:intron 25.0%
! AATCATCAATCTCATTAGAT+TGG + chr1_3:43763938-43763957 None:intergenic 25.0%
!! AATCTAATGAGATTGATGAT+TGG - chr1_3:43763937-43763956 Msa0119630:intron 25.0%
! TATCATTGTTTAATTCTCCA+AGG + chr1_3:43764334-43764353 None:intergenic 25.0%
! AGAGTAAAATATTCATGATG+AGG + chr1_3:43764359-43764378 None:intergenic 25.0%
! CATCAAATACAATATCATGT+TGG + chr1_3:43764567-43764586 None:intergenic 25.0%
! CAACATGATATTGTATTTGA+TGG - chr1_3:43764565-43764584 Msa0119630:intron 25.0%
! TTTCAATATATAGACATACC+AGG + chr1_3:43764739-43764758 None:intergenic 25.0%
!!! TTGGTTTTAAATTACAGTTG+CGG - chr1_3:43764800-43764819 Msa0119630:intron 25.0%
!! AATGTTTGTGTTTTGTATTC+AGG + chr1_3:43764962-43764981 None:intergenic 25.0%
! TGAATACAAAACACAAACAT+TGG - chr1_3:43764961-43764980 Msa0119630:intron 25.0%
!! TTTTGTGTAATTACATGTGT+CGG - chr1_3:43765040-43765059 Msa0119630:intron 25.0%
! TCTTAGTTTACCTTGTAAAT+AGG - chr1_3:43765154-43765173 Msa0119630:intron 25.0%
! CTTAGTTTACCTTGTAAATA+GGG - chr1_3:43765155-43765174 Msa0119630:intron 25.0%
!!! ACTTTTCTTATTTCATCATG+AGG + chr1_3:43765507-43765526 None:intergenic 25.0%
! CATGATGAAATAAGAAAAGT+TGG - chr1_3:43765507-43765526 Msa0119630:intron 25.0%
! TGTAACAACGAATAAGAATA+AGG + chr1_3:43765544-43765563 None:intergenic 25.0%
! TTATTCTTATTCGTTGTTAC+AGG - chr1_3:43765543-43765562 Msa0119630:intron 25.0%
! TATTCTTATTCGTTGTTACA+GGG - chr1_3:43765544-43765563 Msa0119630:intron 25.0%
! AAGATAACCCTAATAACAAT+AGG - chr1_3:43765731-43765750 Msa0119630:intron 25.0%
! AGATAACCCTAATAACAATA+GGG - chr1_3:43765732-43765751 Msa0119630:intron 25.0%
!! GTATATATCCAAGATCATTT+TGG - chr1_3:43765826-43765845 Msa0119630:intron 25.0%
! ATATAGGTACGGTAATTATA+TGG - chr1_3:43766421-43766440 Msa0119630:intron 25.0%
!! GTTTTTATCTTTTCTCTACT+CGG - chr1_3:43766539-43766558 Msa0119630:intron 25.0%
! GATTTCTGATGATATTAACA+AGG - chr1_3:43766842-43766861 Msa0119630:intron 25.0%
!!! TCTATTATTTAGTTTGCAGT+TGG - chr1_3:43766919-43766938 Msa0119630:intron 25.0%
!!! CTATTATTTAGTTTGCAGTT+GGG - chr1_3:43766920-43766939 Msa0119630:intron 25.0%
! AAGAGTTAAGTAAGGATTAA+TGG - chr1_3:43766961-43766980 Msa0119630:intron 25.0%
! ATTAAGTCTCAAAAATTGTG+TGG - chr1_3:43767002-43767021 Msa0119630:intron 25.0%
! ATTTGTGACAAAAACGAATA+TGG + chr1_3:43767095-43767114 None:intergenic 25.0%
! ACTAGATTCTTATTACAACA+TGG + chr1_3:43767192-43767211 None:intergenic 25.0%
AATCACTTTGTGTGTTCAAA+TGG + chr1_3:43761071-43761090 None:intergenic 30.0%
! AAATGCAATAGTTTGGAGTT+TGG + chr1_3:43761096-43761115 None:intergenic 30.0%
AGACATAGTCATAGTAGAAA+TGG + chr1_3:43761161-43761180 None:intergenic 30.0%
AACAAGGAAGTTCAATATTC+AGG - chr1_3:43761235-43761254 Msa0119630:three_prime_UTR 30.0%
GATAACTTACCAATGATGAA+AGG + chr1_3:43761313-43761332 None:intergenic 30.0%
! TATACGTGTTCTTTTATGTC+TGG - chr1_3:43761479-43761498 Msa0119630:CDS 30.0%
! AACTAATGAAATTTTCCGGT+TGG - chr1_3:43761508-43761527 Msa0119630:CDS 30.0%
!! TTAAGTGGGCTTTGAAATTT+GGG + chr1_3:43761624-43761643 None:intergenic 30.0%
!! TTTAAGTGGGCTTTGAAATT+TGG + chr1_3:43761625-43761644 None:intergenic 30.0%
TTATTTATTGTTGCCCAATC+CGG - chr1_3:43762749-43762768 Msa0119630:CDS 30.0%
ACTATAAGATAGTACTCTCA+CGG - chr1_3:43762933-43762952 Msa0119630:intron 30.0%
!!! ACTTTTCAGCGTTTTGATTT+AGG + chr1_3:43763023-43763042 None:intergenic 30.0%
TAAATCAAAACGCTGAAAAG+TGG - chr1_3:43763022-43763041 Msa0119630:intron 30.0%
AGCAACAATTATGACATGAA+TGG + chr1_3:43763285-43763304 None:intergenic 30.0%
! TCAATAGTGTCTTATTCATG+GGG + chr1_3:43763701-43763720 None:intergenic 30.0%
GAAAATCAAAAACAAAGTGG+GGG - chr1_3:43763797-43763816 Msa0119630:CDS 30.0%
GAATATAGCGAAAGAGATAA+AGG - chr1_3:43764034-43764053 Msa0119630:intron 30.0%
TGAATTAAGTCATAGTGAGA+AGG + chr1_3:43764197-43764216 None:intergenic 30.0%
TTTGTTGCAGATTCTTATCT+CGG - chr1_3:43764674-43764693 Msa0119630:intron 30.0%
TCAATCAATACTTTGAACCT+TGG - chr1_3:43764781-43764800 Msa0119630:intron 30.0%
! GCAACTGTAATTTAAAACCA+AGG + chr1_3:43764801-43764820 None:intergenic 30.0%
ACAAACTATATAGTGTGACA+TGG - chr1_3:43764909-43764928 Msa0119630:intron 30.0%
CAAACTATATAGTGTGACAT+GGG - chr1_3:43764910-43764929 Msa0119630:intron 30.0%
TAAACTAAGATTGCTATGGT+GGG + chr1_3:43765144-43765163 None:intergenic 30.0%
AAGGTAAACTAAGATTGCTA+TGG + chr1_3:43765148-43765167 None:intergenic 30.0%
!! TCTTGGAAATGTTTTTCAAC+TGG - chr1_3:43765755-43765774 Msa0119630:intron 30.0%
!! ATATCCAAGATCATTTTGGT+TGG - chr1_3:43765830-43765849 Msa0119630:intron 30.0%
! TTTTCCAACCAAAATGATCT+TGG + chr1_3:43765837-43765856 None:intergenic 30.0%
!!! GATCATTTTGGTTGGAAAAT+TGG - chr1_3:43765838-43765857 Msa0119630:intron 30.0%
!! TTTGGTTGGAAAATTGGTTT+TGG - chr1_3:43765844-43765863 Msa0119630:intron 30.0%
! TGGAAGTTTTCTGTTGTTAT+AGG + chr1_3:43765989-43766008 None:intergenic 30.0%
!! AATTGAGGTGAATTTTTAGG+CGG + chr1_3:43766015-43766034 None:intergenic 30.0%
TTGTTGTGATGGTAAAATTG+AGG + chr1_3:43766030-43766049 None:intergenic 30.0%
! TCAATTTTACCATCACAACA+AGG - chr1_3:43766029-43766048 Msa0119630:intron 30.0%
! GGAACTAACTTTTATATCTC+AGG - chr1_3:43766139-43766158 Msa0119630:intron 30.0%
! GAACAAAGCTTGTGTTATTA+AGG - chr1_3:43766167-43766186 Msa0119630:intron 30.0%
TAATGGAATAACTCTCACAA+TGG + chr1_3:43766277-43766296 None:intergenic 30.0%
TTGTGAGAGTTATTCCATTA+TGG - chr1_3:43766277-43766296 Msa0119630:intron 30.0%
TTATTCCATTATGGTCTAGT+GGG - chr1_3:43766286-43766305 Msa0119630:intron 30.0%
TCTTTGAGCGTTATCAATAT+AGG - chr1_3:43766405-43766424 Msa0119630:intron 30.0%
ATCAGTGCAAAGAAAAGAAT+GGG - chr1_3:43766507-43766526 Msa0119630:intron 30.0%
!! GTCATTTTGACAAATACTCT+TGG - chr1_3:43766865-43766884 Msa0119630:intron 30.0%
AAATACTCTTGGCTTATAAC+TGG - chr1_3:43766876-43766895 Msa0119630:intron 30.0%
TCAGACAAAGAAAATTCAGA+TGG - chr1_3:43767135-43767154 Msa0119630:CDS 30.0%
CAGACAAAGAAAATTCAGAT+GGG - chr1_3:43767136-43767155 Msa0119630:CDS 30.0%
GCTTGTGAAATGCAATAGTT+TGG + chr1_3:43761103-43761122 None:intergenic 35.0%
TCTTGATCTTCTTGTTGCAA+TGG + chr1_3:43761193-43761212 None:intergenic 35.0%
AAGGAAGTTCAATATTCAGG+TGG - chr1_3:43761238-43761257 Msa0119630:three_prime_UTR 35.0%
TCAATATTCAGGTGGTGAAA+TGG - chr1_3:43761246-43761265 Msa0119630:three_prime_UTR 35.0%
! TGATGAAAGGCATAGTGATA+AGG + chr1_3:43761300-43761319 None:intergenic 35.0%
ATCACTATGCCTTTCATCAT+TGG - chr1_3:43761301-43761320 Msa0119630:three_prime_UTR 35.0%
! CATAGAATATTTTGTCGGTC+TGG + chr1_3:43761373-43761392 None:intergenic 35.0%
!! GAGCTTGTTAAATCATGTAG+AGG - chr1_3:43761586-43761605 Msa0119630:CDS 35.0%
! TTAGGGGGCTTTAATTTAGT+GGG + chr1_3:43761663-43761682 None:intergenic 35.0%
! ATTAGGGGGCTTTAATTTAG+TGG + chr1_3:43761664-43761683 None:intergenic 35.0%
ACGTCTTTAATACGAGATGA+CGG - chr1_3:43762787-43762806 Msa0119630:intron 35.0%
AAATGACCCTAATCTAGCAT+GGG + chr1_3:43763202-43763221 None:intergenic 35.0%
TAAATGACCCTAATCTAGCA+TGG + chr1_3:43763203-43763222 None:intergenic 35.0%
AAGTAGGTGTAATTTATCCC+TGG + chr1_3:43763319-43763338 None:intergenic 35.0%
!! CCTACATGCTAATTTTGAGT+TGG + chr1_3:43763344-43763363 None:intergenic 35.0%
CCAACTCAAAATTAGCATGT+AGG - chr1_3:43763341-43763360 Msa0119630:intron 35.0%
TATTGACGGTTAAAATTCGC+TGG - chr1_3:43763649-43763668 Msa0119630:CDS 35.0%
ACCAACAGTCCAACAATTAT+AGG + chr1_3:43763748-43763767 None:intergenic 35.0%
TATAATTGTTGGACTGTTGG+TGG - chr1_3:43763747-43763766 Msa0119630:CDS 35.0%
TTCCAATCATGATATCAAGG+TGG - chr1_3:43763887-43763906 Msa0119630:intron 35.0%
!!! GTGGACATTACTGTTTTTGA+AGG - chr1_3:43763906-43763925 Msa0119630:intron 35.0%
! CACCTAAAAGCTTTTTACCT+TGG - chr1_3:43764314-43764333 Msa0119630:intron 35.0%
! CTCCAAGGTAAAAAGCTTTT+AGG + chr1_3:43764319-43764338 None:intergenic 35.0%
!! CGATTCTTAAGTGTTGGATT+AGG - chr1_3:43764698-43764717 Msa0119630:intron 35.0%
CGTTGCGATTGTGATAATTA+TGG - chr1_3:43764824-43764843 Msa0119630:intron 35.0%
! GTTTTGTATTCAGGCTTCAT+AGG + chr1_3:43764953-43764972 None:intergenic 35.0%
GTAAACTAAGATTGCTATGG+TGG + chr1_3:43765145-43765164 None:intergenic 35.0%
TACCTTGTAAATAGGGATTG+AGG - chr1_3:43765162-43765181 Msa0119630:intron 35.0%
ACCTTGTAAATAGGGATTGA+GGG - chr1_3:43765163-43765182 Msa0119630:intron 35.0%
GGATAAGCATCACACAATTT+CGG + chr1_3:43765311-43765330 None:intergenic 35.0%
CAATATTTCAACCGCAATTG+CGG - chr1_3:43765442-43765461 Msa0119630:intron 35.0%
GGGCATATGATTTCAAATTG+TGG + chr1_3:43765475-43765494 None:intergenic 35.0%
TTATTCGTTGTTACAGGGAA+TGG - chr1_3:43765549-43765568 Msa0119630:intron 35.0%
AACAGCAATGATCAAACCAA+CGG - chr1_3:43765585-43765604 Msa0119630:intron 35.0%
TGCAATTGACATGAGACTAA+AGG + chr1_3:43765659-43765678 None:intergenic 35.0%
TTTAGTCTCATGTCAATTGC+AGG - chr1_3:43765658-43765677 Msa0119630:intron 35.0%
! CCAAGACCCTATTGTTATTA+GGG + chr1_3:43765741-43765760 None:intergenic 35.0%
! TCCAAGACCCTATTGTTATT+AGG + chr1_3:43765742-43765761 None:intergenic 35.0%
! GATAAAAACATGAGTGCTGT+TGG + chr1_3:43765874-43765893 None:intergenic 35.0%
AGCAAGAAAGAATAACAGTG+TGG + chr1_3:43765896-43765915 None:intergenic 35.0%
TGGTTCCAACTGATAAACTA+AGG - chr1_3:43766064-43766083 Msa0119630:intron 35.0%
TCCAACTGATAAACTAAGGT+AGG - chr1_3:43766068-43766087 Msa0119630:intron 35.0%
ACCTACCTTAGTTTATCAGT+TGG + chr1_3:43766072-43766091 None:intergenic 35.0%
GAACAAGATATAGCATGTGA+TGG - chr1_3:43766195-43766214 Msa0119630:intron 35.0%
GTTATTCCATTATGGTCTAG+TGG - chr1_3:43766285-43766304 Msa0119630:intron 35.0%
GAGCGTTATCAATATAGGTA+CGG - chr1_3:43766410-43766429 Msa0119630:intron 35.0%
ATGCTAAAGGAATAAGAACG+CGG + chr1_3:43766461-43766480 None:intergenic 35.0%
! CTTTAGCATCGAAGATAAGA+GGG - chr1_3:43766472-43766491 Msa0119630:intron 35.0%
GATCAGTGCAAAGAAAAGAA+TGG - chr1_3:43766506-43766525 Msa0119630:intron 35.0%
GCAAAGAAAAGAATGGGAAT+TGG - chr1_3:43766513-43766532 Msa0119630:intron 35.0%
!!! CAGCGATTTTTGAGACTATA+AGG - chr1_3:43766568-43766587 Msa0119630:intron 35.0%
! TCTGAAGCAGTCAATTTCAT+AGG - chr1_3:43766666-43766685 Msa0119630:intron 35.0%
GTAGAAAACACTACTTCAAG+AGG - chr1_3:43766804-43766823 Msa0119630:intron 35.0%
TTACTTAACTCTTCAACTGC+AGG + chr1_3:43766954-43766973 None:intergenic 35.0%
TGCAGTTGAAGAGTTAAGTA+AGG - chr1_3:43766953-43766972 Msa0119630:intron 35.0%
! AGTAAGGATTAATGGCTTTG+TGG - chr1_3:43766969-43766988 Msa0119630:intron 35.0%
! CGTTTTTGTCACAAATGAGT+AGG - chr1_3:43767099-43767118 Msa0119630:CDS 35.0%
! ATTTAAGATACTCGAACGCA+TGG + chr1_3:43767242-43767261 None:intergenic 35.0%
AATGAAAAGTCGCAACTTCA+AGG - chr1_3:43767336-43767355 Msa0119630:five_prime_UTR 35.0%
!!! TGGTGGAGGCTTTTTTAAGT+GGG + chr1_3:43761638-43761657 None:intergenic 40.0%
!!! TTGGTGGAGGCTTTTTTAAG+TGG + chr1_3:43761639-43761658 None:intergenic 40.0%
!! CTTTAATTTAGTGGGCTTGG+TGG + chr1_3:43761655-43761674 None:intergenic 40.0%
TGTTTCTTCTACTCCGGATT+GGG + chr1_3:43762765-43762784 None:intergenic 40.0%
! TTGTTTCTTCTACTCCGGAT+TGG + chr1_3:43762766-43762785 None:intergenic 40.0%
!! ACGTCTTGTTTCTTCTACTC+CGG + chr1_3:43762771-43762790 None:intergenic 40.0%
! TCTTTAATACGAGATGACGG+AGG - chr1_3:43762790-43762809 Msa0119630:intron 40.0%
!! CTTTAATACGAGATGACGGA+GGG - chr1_3:43762791-43762810 Msa0119630:intron 40.0%
ATCTTATAGTGAGCGATGAG+AGG + chr1_3:43762923-43762942 None:intergenic 40.0%
AATGACCCTAATCTAGCATG+GGG + chr1_3:43763201-43763220 None:intergenic 40.0%
TGTTGCTACTATTTCAGACC+AGG - chr1_3:43763298-43763317 Msa0119630:intron 40.0%
GTTGCTACTATTTCAGACCA+GGG - chr1_3:43763299-43763318 Msa0119630:intron 40.0%
TCATGGGGTTTCTCACTAAA+CGG + chr1_3:43763686-43763705 None:intergenic 40.0%
GCCTATAATTGTTGGACTGT+TGG - chr1_3:43763744-43763763 Msa0119630:CDS 40.0%
GATTCTCTCACTCAAACTCA+GGG + chr1_3:43763856-43763875 None:intergenic 40.0%
GTCCACCTTGATATCATGAT+TGG + chr1_3:43763892-43763911 None:intergenic 40.0%
! CACATGCTCGCATCTTTTTA+AGG + chr1_3:43764112-43764131 None:intergenic 40.0%
AAAAAGATGCGAGCATGTGA+AGG - chr1_3:43764113-43764132 Msa0119630:intron 40.0%
GTGATTGTTTGCAGCAAATG+AGG - chr1_3:43764508-43764527 Msa0119630:intron 40.0%
TCTCCAAGATGAAGCTTGAA+AGG + chr1_3:43764593-43764612 None:intergenic 40.0%
! TAAGAAGCACATACACTCCT+CGG + chr1_3:43765113-43765132 None:intergenic 40.0%
CCTTGTAAATAGGGATTGAG+GGG - chr1_3:43765164-43765183 Msa0119630:intron 40.0%
CTTGTAAATAGGGATTGAGG+GGG - chr1_3:43765165-43765184 Msa0119630:intron 40.0%
TGGGAAGATTTGAACGAACA+TGG - chr1_3:43765285-43765304 Msa0119630:intron 40.0%
CGATCAATCACCAACATCAT+GGG - chr1_3:43765612-43765631 Msa0119630:intron 40.0%
ATCACCAACATCATGGGAAA+TGG - chr1_3:43765618-43765637 Msa0119630:intron 40.0%
! ATTGCCATTTCCCATGATGT+TGG + chr1_3:43765625-43765644 None:intergenic 40.0%
GTTTCATGTTCCATGGCATT+TGG - chr1_3:43765688-43765707 Msa0119630:intron 40.0%
CCCTAATAACAATAGGGTCT+TGG - chr1_3:43765738-43765757 Msa0119630:intron 40.0%
!! GGTGAATTTTTAGGCGGTAA+TGG + chr1_3:43766009-43766028 None:intergenic 40.0%
! GATTTGAGTCCTTGTTGTGA+TGG + chr1_3:43766041-43766060 None:intergenic 40.0%
ATGGTTCAAGAATAAACCCC+TGG - chr1_3:43766214-43766233 Msa0119630:intron 40.0%
TCTACTGTGCATAGATTCCA+GGG + chr1_3:43766234-43766253 None:intergenic 40.0%
ATCTACTGTGCATAGATTCC+AGG + chr1_3:43766235-43766254 None:intergenic 40.0%
ATGATCCCACTAGACCATAA+TGG + chr1_3:43766294-43766313 None:intergenic 40.0%
ATCATGATGACCCTTAGCAT+TGG - chr1_3:43766309-43766328 Msa0119630:intron 40.0%
AAATGAGCCTCCAATGCTAA+GGG + chr1_3:43766322-43766341 None:intergenic 40.0%
AAAATGAGCCTCCAATGCTA+AGG + chr1_3:43766323-43766342 None:intergenic 40.0%
CCTCTTATCTTCGATGCTAA+AGG + chr1_3:43766474-43766493 None:intergenic 40.0%
! CCTTTAGCATCGAAGATAAG+AGG - chr1_3:43766471-43766490 Msa0119630:intron 40.0%
! TTCTTTGCACTGATCGTAAC+TGG + chr1_3:43766501-43766520 None:intergenic 40.0%
! AAATGCGAACGATGGAGTTT+TGG - chr1_3:43766596-43766615 Msa0119630:intron 40.0%
!!! CGATGGAGTTTTGGAAATGT+CGG - chr1_3:43766605-43766624 Msa0119630:intron 40.0%
!! TTTTGGAAATGTCGGCATTG+TGG - chr1_3:43766613-43766632 Msa0119630:intron 40.0%
ATACCAGCTAGACAAAGTTG+AGG + chr1_3:43766645-43766664 None:intergenic 40.0%
GCAACACTAGACATAGTACT+TGG + chr1_3:43766720-43766739 None:intergenic 40.0%
GAAAACACTACTTCAAGAGG+AGG - chr1_3:43766807-43766826 Msa0119630:intron 40.0%
ACTTCAAGAGGAGGAAAAGA+TGG - chr1_3:43766816-43766835 Msa0119630:intron 40.0%
CTTCAAGAGGAGGAAAAGAT+GGG - chr1_3:43766817-43766836 Msa0119630:intron 40.0%
!! TTAGTTTGCAGTTGGGCTTA+TGG - chr1_3:43766927-43766946 Msa0119630:intron 40.0%
TCACAAATGAGTAGGCTTGA+TGG - chr1_3:43767107-43767126 Msa0119630:CDS 40.0%
TTCTCAACCACAAAGACGCA+AGG - chr1_3:43761270-43761289 Msa0119630:three_prime_UTR 45.0%
TCTCAACCACAAAGACGCAA+GGG - chr1_3:43761271-43761290 Msa0119630:three_prime_UTR 45.0%
CACTCTCTCTCAAGCATTCA+AGG + chr1_3:43761561-43761580 None:intergenic 45.0%
!! TAATTTAGTGGGCTTGGTGG+AGG + chr1_3:43761652-43761671 None:intergenic 45.0%
!! GGGCTTTAATTTAGTGGGCT+TGG + chr1_3:43761658-43761677 None:intergenic 45.0%
GTGCTTGCTTGTGTAGAGAA+GGG - chr1_3:43762830-43762849 Msa0119630:intron 45.0%
TGCTTGCTTGTGTAGAGAAG+GGG - chr1_3:43762831-43762850 Msa0119630:intron 45.0%
ATGGGGTGGTGACAATTAAG+AGG + chr1_3:43763184-43763203 None:intergenic 45.0%
TTGGTGGAGAACCACTGAAT+AGG - chr1_3:43763763-43763782 Msa0119630:CDS 45.0%
TGGAGAACCACTGAATAGGA+AGG - chr1_3:43763767-43763786 Msa0119630:CDS 45.0%
GGAGAACCACTGAATAGGAA+GGG - chr1_3:43763768-43763787 Msa0119630:CDS 45.0%
TTGGTACCCTTCCTATTCAG+TGG + chr1_3:43763777-43763796 None:intergenic 45.0%
CGATTCTCTCACTCAAACTC+AGG + chr1_3:43763857-43763876 None:intergenic 45.0%
! TTTGCAGCAAATGAGGCACT+TGG - chr1_3:43764515-43764534 Msa0119630:intron 45.0%
CTTGGCAATACTGCAAGCTT+AGG - chr1_3:43764533-43764552 Msa0119630:intron 45.0%
GGACCTTTCAAGCTTCATCT+TGG - chr1_3:43764587-43764606 Msa0119630:intron 45.0%
! CTCGGTCGATTCTTAAGTGT+TGG - chr1_3:43764692-43764711 Msa0119630:intron 45.0%
GTTAACTGCATTGCAACTGC+TGG - chr1_3:43764852-43764871 Msa0119630:intron 45.0%
! AAGAAGCACATACACTCCTC+GGG + chr1_3:43765112-43765131 None:intergenic 45.0%
CCCCTCAATCCCTATTTACA+AGG + chr1_3:43765167-43765186 None:intergenic 45.0%
ATCCTGATGCAGTTACAGTG+TGG - chr1_3:43765327-43765346 Msa0119630:intron 45.0%
AACCACACTGTAACTGCATC+AGG + chr1_3:43765332-43765351 None:intergenic 45.0%
GTGGTTATACACGTACGTAG+AGG - chr1_3:43765346-43765365 Msa0119630:intron 45.0%
AGAGGCTAGCAGTTACAATG+TGG - chr1_3:43765364-43765383 Msa0119630:intron 45.0%
TCATCATGAGGTTCAGCTCA+GGG + chr1_3:43765495-43765514 None:intergenic 45.0%
TTCATCATGAGGTTCAGCTC+AGG + chr1_3:43765496-43765515 None:intergenic 45.0%
TACAGGGAATGGCATTGTTG+TGG - chr1_3:43765560-43765579 Msa0119630:intron 45.0%
GCAATGATCAAACCAACGGA+AGG - chr1_3:43765589-43765608 Msa0119630:intron 45.0%
GCGATCAATCACCAACATCA+TGG - chr1_3:43765611-43765630 Msa0119630:intron 45.0%
TGCTGGTGTTTCATGTTCCA+TGG - chr1_3:43765681-43765700 Msa0119630:intron 45.0%
CGCAAAACTAGCGAACAAGT+TGG + chr1_3:43765950-43765969 None:intergenic 45.0%
CAACAAGGACTCAAATCTCG+TGG - chr1_3:43766044-43766063 Msa0119630:intron 45.0%
CTACTGTGCATAGATTCCAG+GGG + chr1_3:43766233-43766252 None:intergenic 45.0%
! ATGATGACCCTTAGCATTGG+AGG - chr1_3:43766312-43766331 Msa0119630:intron 45.0%
GGAGGTGATATGTCTGTTCA+AGG + chr1_3:43766364-43766383 None:intergenic 45.0%
!! CTCCAACTTTGAAGTTCCAG+CGG - chr1_3:43766380-43766399 Msa0119630:intron 45.0%
!! TCCAACTTTGAAGTTCCAGC+GGG - chr1_3:43766381-43766400 Msa0119630:intron 45.0%
AGGAGAAGAAATGCGAACGA+TGG - chr1_3:43766588-43766607 Msa0119630:intron 45.0%
! TTCGCTTTCTGGATTGGGAA+TGG - chr1_3:43766743-43766762 Msa0119630:intron 45.0%
GAAAAGTCGCAACTTCAAGG+AGG - chr1_3:43767339-43767358 Msa0119630:five_prime_UTR 45.0%
!!! ATTTTTTTTTTAATTTTTTC+TGG - chr1_3:43763979-43763998 Msa0119630:intron 5.0%
GGTGCTTGCTTGTGTAGAGA+AGG - chr1_3:43762829-43762848 Msa0119630:intron 50.0%
TCACCACCCCATGCTAGATT+AGG - chr1_3:43763192-43763211 Msa0119630:intron 50.0%
CACCACCCCATGCTAGATTA+GGG - chr1_3:43763193-43763212 Msa0119630:intron 50.0%
CTCTCACTCAAACTCAGGGA+CGG + chr1_3:43763852-43763871 None:intergenic 50.0%
AACCACAGGCATGAACTTGC+TGG + chr1_3:43764648-43764667 None:intergenic 50.0%
AGCAAGTTCATGCCTGTGGT+TGG - chr1_3:43764647-43764666 Msa0119630:intron 50.0%
!! GCAACAAAAGCACCAACCAC+AGG + chr1_3:43764662-43764681 None:intergenic 50.0%
AGGTTCTGCTGTCAGTTTCC+TGG - chr1_3:43764718-43764737 Msa0119630:intron 50.0%
! TGATGCGCTAGCCTCTATGA+TGG + chr1_3:43765421-43765440 None:intergenic 50.0%
GTGGTCTGTATCCGCAATTG+CGG + chr1_3:43765456-43765475 None:intergenic 50.0%
CTCATGTCAATTGCAGGTGC+TGG - chr1_3:43765664-43765683 Msa0119630:intron 50.0%
TTGGTCTGCACCAAATGCCA+TGG + chr1_3:43765701-43765720 None:intergenic 50.0%
CGCTGGAACTTCAAAGTTGG+AGG + chr1_3:43766382-43766401 None:intergenic 50.0%
TCCCGCTGGAACTTCAAAGT+TGG + chr1_3:43766385-43766404 None:intergenic 50.0%
ATAACGCTCAAAGATCCCGC+TGG + chr1_3:43766399-43766418 None:intergenic 50.0%
GCACCTCAACTTTGTCTAGC+TGG - chr1_3:43766639-43766658 Msa0119630:intron 50.0%
! AGTGTTGCTGCTTCGCTTTC+TGG - chr1_3:43766732-43766751 Msa0119630:intron 50.0%
! TGCTGCTTCGCTTTCTGGAT+TGG - chr1_3:43766737-43766756 Msa0119630:intron 50.0%
GCTGCTTCGCTTTCTGGATT+GGG - chr1_3:43766738-43766757 Msa0119630:intron 50.0%
CAAGAGGAGGAAAAGATGGG+TGG - chr1_3:43766820-43766839 Msa0119630:intron 50.0%
CAACCACAAAGACGCAAGGG+TGG - chr1_3:43761274-43761293 Msa0119630:three_prime_UTR 55.0%
!! TACGAGATGACGGAGGGAGT+TGG - chr1_3:43762797-43762816 Msa0119630:intron 55.0%
GGAGGGAGTTGGAGACATGA+AGG - chr1_3:43762808-43762827 Msa0119630:intron 55.0%
GACCCTAATCTAGCATGGGG+TGG + chr1_3:43763198-43763217 None:intergenic 55.0%
ACTCAGGGACGGATGCACTT+TGG + chr1_3:43763841-43763860 None:intergenic 55.0%
! TGCTGGCTGCAGCAGATAAG+AGG + chr1_3:43764631-43764650 None:intergenic 55.0%
AGCCAGCAAGTTCATGCCTG+TGG - chr1_3:43764643-43764662 Msa0119630:intron 55.0%
GTCAGACACGTGTCCAACAC+CGG - chr1_3:43765075-43765094 Msa0119630:intron 55.0%
TCAGACACGTGTCCAACACC+GGG - chr1_3:43765076-43765095 Msa0119630:intron 55.0%
GCACATACACTCCTCGGGTT+AGG + chr1_3:43765107-43765126 None:intergenic 55.0%
CGCAACTGCGGTGTGAACTT+CGG + chr1_3:43765390-43765409 None:intergenic 55.0%
CGAAGTTCACACCGCAGTTG+CGG - chr1_3:43765388-43765407 Msa0119630:intron 55.0%
ATGGCATCACACCGCAACTG+CGG + chr1_3:43765402-43765421 None:intergenic 55.0%
GCGGTGTGATGCCATCATAG+AGG - chr1_3:43765407-43765426 Msa0119630:intron 55.0%
GGTGATTGATCGCCTTCCGT+TGG + chr1_3:43765604-43765623 None:intergenic 55.0%
! TCTGGATTGGGAATGGCTGC+AGG - chr1_3:43766750-43766769 Msa0119630:intron 55.0%
AGGCCACCCTTGCGTCTTTG+TGG + chr1_3:43761280-43761299 None:intergenic 60.0%
GCAACTGCTGGCAACTGCTG+TGG - chr1_3:43764864-43764883 Msa0119630:intron 60.0%
GGGAATGGCTGCAGGAAGCT+TGG - chr1_3:43766758-43766777 Msa0119630:intron 60.0%
GGTTAGGCGTGTCCCGGTGT+TGG + chr1_3:43765091-43765110 None:intergenic 65.0%
! TCCTCGGGTTAGGCGTGTCC+CGG + chr1_3:43765097-43765116 None:intergenic 65.0%
ACCGGGACACGCCTAACCCG+AGG - chr1_3:43765093-43765112 Msa0119630:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 43760991 43767370 43760991 ID=Msa0119630;Name=Msa0119630
chr1_3 mRNA 43760991 43767370 43760991 ID=Msa0119630-mRNA-1;Parent=Msa0119630;Name=Msa0119630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=178|1|1|1|1|1|4|390|570
chr1_3 exon 43760991 43762200 43760991 ID=Msa0119630-mRNA-1:exon:13125;Parent=Msa0119630-mRNA-1
chr1_3 exon 43762276 43762796 43762276 ID=Msa0119630-mRNA-1:exon:13124;Parent=Msa0119630-mRNA-1
chr1_3 exon 43763622 43763839 43763622 ID=Msa0119630-mRNA-1:exon:13123;Parent=Msa0119630-mRNA-1
chr1_3 exon 43767039 43767370 43767039 ID=Msa0119630-mRNA-1:exon:13122;Parent=Msa0119630-mRNA-1
chr1_3 five_prime_UTR 43767193 43767370 43767193 ID=Msa0119630-mRNA-1:five_prime_utr;Parent=Msa0119630-mRNA-1
chr1_3 CDS 43767039 43767192 43767039 ID=Msa0119630-mRNA-1:cds;Parent=Msa0119630-mRNA-1
chr1_3 CDS 43763622 43763839 43763622 ID=Msa0119630-mRNA-1:cds;Parent=Msa0119630-mRNA-1
chr1_3 CDS 43762276 43762796 43762276 ID=Msa0119630-mRNA-1:cds;Parent=Msa0119630-mRNA-1
chr1_3 CDS 43761381 43762200 43761381 ID=Msa0119630-mRNA-1:cds;Parent=Msa0119630-mRNA-1
chr1_3 three_prime_UTR 43760991 43761380 43760991 ID=Msa0119630-mRNA-1:three_prime_utr;Parent=Msa0119630-mRNA-1
Gene Sequence

>Msa0119630

ATGACTATGTCTATATATGTTCCATTGCAACAAGAAGATCAAGATGATGATACAAATCAAAAAATCAACAAGGAAGTTCAATATTCAGGTGGTGAAATGGTTTCTCAACCACAAAGACGCAAGGGTGGCCTTATCACTATGCCTTTCATCATTGCAAATGAGGCACTTGGCAATACTGCAAGCTTAGGAATTTTGCCCAACATGATATTGTATTTGATGGGACCTTTCAAGCTTCATCTTGGAGAAGCTAATCAAATACTCCTCTTATCTGCTGCAGCCAGCAAGTTCATGCCTGTGGTTGGTGCTTTTGTTGCAGATTCTTATCTCGGTCGATTCTTAAGTGTTGGATTAGGTTCTGCTGTCAGTTTCCTGGGAATGGCATTGTTGTGGTTAACAGCAATGATCAAACCAACGGAAGGCGATCAATCACCAACATCATGGGAAATGGCAATGTTAATATCTGCCTTTAGTCTCATGTCAATTGCAGGTGCTGGTGTTTCATGTTCCATGGCATTTGGTGCAGACCAAGTAAATATAAAAGATAACCCTAATAACAATAGGGTCTTGGAAATGTTTTTCAACTGGTATTATGCTTTTGCAAGTATCTCTGCGATAATAGCTCTCACTGTAATAGTATATATCCAAGATCATTTTGGTTGGAAAATTGGTTTTGGAGTTCCAACAGCACTCATGTTTTTATCCACACTGTTATTCTTTCTTGCTTCTCCTCTTTATGTAAAGATTCAAAAAAGAACCAACTTGTTCGCTAGTTTTGCGCAAGTAATCGTTGCTTCCTATAACAACAGAAAACTTCCATTACCGCCTAAAAATTCACCTCAATTTTACCATCACAACAAGGACTCAAATCTCGTGGTTCCAACTGATAAACTAAGGTTTCTGAACAAAGCTTGTGTTATTAAGGAATTTGAACAAGATATAGCATGTGATGGTTCAAGAATAAACCCCTGGAATCTATGCACAGTAGATCAAGTAGAAGAATTAAAAGCCATTGTGAGAGTTATTCCATTATGGTCTAGTGGGATCATGATGACCCTTAGCATTGGAGGCTCATTTTCATTGCTTCAAGCTAAAACCTTGAACAGACATATCACCTCCAACTTTGAAGTTCCAGCGGGATCTTTGAGCGTTATCAATATAGGTACGGTAATTATATGGATAGTTTTCTATGACCGCGTTCTTATTCCTTTAGCATCGAAGATAAGAGGGAAACCAGTTACGATCAGTGCAAAGAAAAGAATGGGAATTGGTTTGTTTTTATCTTTTCTCTACTCGGTAAATGCAGCGATTTTTGAGACTATAAGGAGAAGAAATGCGAACGATGGAGTTTTGGAAATGTCGGCATTGTGGCTTGCACCTCAACTTTGTCTAGCTGGTATATCTGAAGCAGTCAATTTCATAGGCCAAAATGAGTTTTATTATACAGAGTTTCCAAGTACTATGTCTAGTGTTGCTGCTTCGCTTTCTGGATTGGGAATGGCTGCAGGAAGCTTGGTATCATCTTTACTGTTCAGCATTGTAGAAAACACTACTTCAAGAGGAGGAAAAGATGGGTGGATTTCTGATGATATTAACAAGGGTCATTTTGACAAATACTCTTGGCTTATAACTGGAGTTAGTGCCCTTAATATACTCTATTATTTAGTTTGCAGTTGGGCTTATGGACCTGCAGTTGAAGAGTTAAGTAAGGATTAA
Protein sequence

>Msa0119630

MTMSIYVPLQQEDQDDDTNQKINKEVQYSGGEMVSQPQRRKGGLITMPFIIANEALGNTASLGILPNMILYLMGPFKLHLGEANQILLLSAAASKFMPVVGAFVADSYLGRFLSVGLGSAVSFLGMALLWLTAMIKPTEGDQSPTSWEMAMLISAFSLMSIAGAGVSCSMAFGADQVNIKDNPNNNRVLEMFFNWYYAFASISAIIALTVIVYIQDHFGWKIGFGVPTALMFLSTLLFFLASPLYVKIQKRTNLFASFAQVIVASYNNRKLPLPPKNSPQFYHHNKDSNLVVPTDKLRFLNKACVIKEFEQDIACDGSRINPWNLCTVDQVEELKAIVRVIPLWSSGIMMTLSIGGSFSLLQAKTLNRHITSNFEVPAGSLSVINIGTVIIWIVFYDRVLIPLASKIRGKPVTISAKKRMGIGLFLSFLYSVNAAIFETIRRRNANDGVLEMSALWLAPQLCLAGISEAVNFIGQNEFYYTEFPSTMSSVAASLSGLGMAAGSLVSSLLFSIVENTTSRGGKDGWISDDINKGHFDKYSWLITGVSALNILYYLVCSWAYGPAVEELSKD*