AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0736120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736120 MtrunA17_Chr5g0433491 93.284 134 8 1 48 180 77 210 6.88e-86 251
Msa0736120 MtrunA17_Chr3g0109681 60.544 147 55 3 36 180 72 217 2.37e-54 171
Msa0736120 MtrunA17_Chr7g0231191 34.118 170 100 3 2 164 12 176 1.63e-25 97.1
Msa0736120 MtrunA17_Chr2g0290281 31.746 126 80 3 50 170 56 180 4.46e-13 64.3
Msa0736120 MtrunA17_Chr4g0042551 33.333 105 68 1 50 152 106 210 2.55e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736120 AT1G17200.1 60.305 131 50 2 49 178 73 202 6.77e-49 157
Msa0736120 AT1G17200.2 55.963 109 46 2 71 178 1 108 1.30e-35 120
Msa0736120 AT3G14380.1 54.310 116 52 1 49 163 63 178 1.11e-31 112
Msa0736120 AT5G54980.1 34.459 148 90 3 23 168 50 192 4.92e-16 72.8
Msa0736120 AT4G16442.1 32.061 131 84 2 38 163 44 174 1.36e-12 63.2
Msa0736120 AT2G35760.1 31.034 145 86 4 22 160 54 190 7.30e-12 61.6

Find 58 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACTCATATCCTCTTAT+AGG 0.157418 5_1:+52080455 Msa0736120:CDS
AGCAAAACTATAAATCTAAA+AGG 0.271692 5_1:-52080601 None:intergenic
GTTCTATACCTTGCTGAATA+TGG 0.284110 5_1:+52080322 Msa0736120:CDS
TTCAACTATGCCTAAGGCTT+GGG 0.330570 5_1:+52079193 Msa0736120:CDS
AAAGGAAATGACCAACGATT+AGG 0.339951 5_1:-52080583 None:intergenic
AGCTTTGGTCTTGGTGGTAC+AGG 0.345419 5_1:-52078296 None:intergenic
AGACCAAAGCTAGGAGACTA+TGG 0.350545 5_1:+52078308 Msa0736120:CDS
TGGGAGTTGTTGACTTGTGC+TGG 0.377358 5_1:-52080499 None:intergenic
AGTTCAGCTTGTGGATCTTT+CGG 0.384816 5_1:+52080364 Msa0736120:CDS
GTCTTGATGTCGAAAGCAAC+GGG 0.391281 5_1:-52078380 None:intergenic
AAGGAAATGACCAACGATTA+GGG 0.397305 5_1:-52080582 None:intergenic
AACCCATAGTCTCCTAGCTT+TGG 0.406430 5_1:-52078311 None:intergenic
CTTAGGCATAGTTGAAGAAC+GGG 0.417905 5_1:-52079186 None:intergenic
CTTCAACTATGCCTAAGGCT+TGG 0.422317 5_1:+52079192 Msa0736120:CDS
ACTAGCATTGCTGCTTTCAA+TGG 0.434764 5_1:+52080529 Msa0736120:CDS
TAGTCTCCTAGCTTTGGTCT+TGG 0.452939 5_1:-52078305 None:intergenic
TCTCCTAGCTTTGGTCTTGG+TGG 0.457247 5_1:-52078302 None:intergenic
TTTGCTAAATAGCCTATAAG+AGG 0.458378 5_1:-52080467 None:intergenic
TCGAAAGCAACGGGGTTAGC+TGG 0.466058 5_1:-52078371 None:intergenic
ATCAAGACCACCGTTCTGAA+TGG 0.476440 5_1:+52078395 Msa0736120:CDS
CCGTTCTTCAACTATGCCTA+AGG 0.477704 5_1:+52079187 Msa0736120:CDS
TCAAGACCACCGTTCTGAAT+GGG 0.503540 5_1:+52078396 Msa0736120:CDS
CATGTACTTTGTTATCCACC+AGG 0.504588 5_1:-52080706 None:intergenic
GAGGGAGTCATAATATTGTA+AGG 0.510315 5_1:-52080556 None:intergenic
AGTTATCACATTTATTGCTG+TGG 0.518652 5_1:+52080417 Msa0736120:CDS
ACATACATAATCCTAGCTGC+TGG 0.524742 5_1:+52080283 Msa0736120:CDS
GGTTAGCTGGTTGAAAAGTG+TGG 0.527246 5_1:-52078358 None:intergenic
ATTCATGTACACATCACAAA+GGG 0.551225 5_1:-52080675 None:intergenic
CATGCCAATGGTATTTGTGC+AGG 0.554512 5_1:+52079128 Msa0736120:CDS
CTCCCTCTGTCCCTAATCGT+TGG 0.562122 5_1:+52080572 Msa0736120:three_prime_UTR
CAGCAATGCTAGTGTCCTTG+TGG 0.563670 5_1:-52080519 None:intergenic
GAATATGGAGTCCCTACTGC+AGG 0.568100 5_1:+52080337 Msa0736120:CDS
AGCAATGCTAGTGTCCTTGT+GGG 0.569064 5_1:-52080518 None:intergenic
GCTGAACTCCATCCTGCAGT+AGG 0.577795 5_1:-52080349 None:intergenic
GGTCTTGATGTCGAAAGCAA+CGG 0.583249 5_1:-52078381 None:intergenic
CTGAACTCCATCCTGCAGTA+GGG 0.588006 5_1:-52080348 None:intergenic
GTTAGCTGGTTGAAAAGTGT+GGG 0.589016 5_1:-52078357 None:intergenic
CCTTAGGCATAGTTGAAGAA+CGG 0.589254 5_1:-52079187 None:intergenic
AGGTATTTGGTGCATGCCAA+TGG 0.592552 5_1:+52079116 Msa0736120:intron
TTAATACAGCTCCAGCAGCT+AGG 0.598816 5_1:-52080294 None:intergenic
ATATCCTGCACAAATACCAT+TGG 0.600027 5_1:-52079132 None:intergenic
GCAGGATGGAGTTCAGCTTG+TGG 0.603477 5_1:+52080355 Msa0736120:CDS
GACCAACGATTAGGGACAGA+GGG 0.609734 5_1:-52080574 None:intergenic
ATCTCTCAACCCATTCAGAA+CGG 0.610035 5_1:-52078405 None:intergenic
ATGGAGTCCCTACTGCAGGA+TGG 0.616514 5_1:+52080341 Msa0736120:CDS
GACCAAAGCTAGGAGACTAT+GGG 0.619869 5_1:+52078309 Msa0736120:CDS
GTACATGAATAATTATATCC+TGG 0.624732 5_1:+52080688 Msa0736120:three_prime_UTR
TATTCATGTACACATCACAA+AGG 0.633588 5_1:-52080676 None:intergenic
GTACCACCAAGACCAAAGCT+AGG 0.634395 5_1:+52078299 Msa0736120:CDS
CATGAATAATTATATCCTGG+TGG 0.635470 5_1:+52080691 Msa0736120:three_prime_UTR
TGACCAACGATTAGGGACAG+AGG 0.671807 5_1:-52080575 None:intergenic
TAGGGACTCCATATTCAGCA+AGG 0.672967 5_1:-52080330 None:intergenic
ACAAGTCAACAACTCCCACA+AGG 0.673400 5_1:+52080504 Msa0736120:CDS
TGCTGGAGCTGTATTAACAG+AGG 0.687633 5_1:+52080300 Msa0736120:CDS
TCTCAACCCATTCAGAACGG+TGG 0.703143 5_1:-52078402 None:intergenic
TATGGGTTAGCAACTCATCG+TGG 0.742346 5_1:+52078326 Msa0736120:CDS
TCTTGATGTCGAAAGCAACG+GGG 0.771837 5_1:-52078379 None:intergenic
TTAGGCATAGTTGAAGAACG+GGG 0.790287 5_1:-52079185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATACAAATTTTATCT+GGG - chr5_1:52078768-52078787 None:intergenic 10.0%
!!! AAATAAATACAAATTTTATC+TGG - chr5_1:52078769-52078788 None:intergenic 10.0%
!! CAAAAGTAAATAAAAATTAT+AGG + chr5_1:52079963-52079982 Msa0736120:intron 10.0%
!! AAAGTAAATAAAAATTATAG+GGG + chr5_1:52079965-52079984 Msa0736120:intron 10.0%
!! TAAAAAATTCAAATATTACA+GGG + chr5_1:52080122-52080141 Msa0736120:intron 10.0%
!!! ATTTTTACATCAAAATTTAA+AGG - chr5_1:52080173-52080192 None:intergenic 10.0%
!! NNNNNAAGAACTAATTTGAT+TGG + chr5_1:52078604-52078623 Msa0736120:intron 15.0%
!!! GAATTTGTTTTTTTATTGAT+AGG + chr5_1:52078648-52078667 Msa0736120:intron 15.0%
!!! ATAAATACAAATTTTATCTG+GGG - chr5_1:52078767-52078786 None:intergenic 15.0%
!!! GAATTATATTTTAAGTCAAT+AGG + chr5_1:52078869-52078888 Msa0736120:intron 15.0%
!! CTGTTAAATATTCATATAAA+AGG + chr5_1:52079898-52079917 Msa0736120:intron 15.0%
!! AAGTAAATAAAAATTATAGG+GGG + chr5_1:52079966-52079985 Msa0736120:intron 15.0%
!! GTAAAAAATTCAAATATTAC+AGG + chr5_1:52080121-52080140 Msa0736120:intron 15.0%
!!! TAAATACAAATTTTATCTGG+GGG - chr5_1:52078766-52078785 None:intergenic 20.0%
!!! CTATTTTAATCAGTTTGTAT+AGG + chr5_1:52079475-52079494 Msa0736120:intron 20.0%
!! TATCTAAGAATTAACCATAT+TGG + chr5_1:52079813-52079832 Msa0736120:intron 20.0%
!! TTTCTTATTCATTACCAATA+TGG - chr5_1:52079830-52079849 None:intergenic 20.0%
!! GAATAAGAAAAATACTCAAA+AGG + chr5_1:52079840-52079859 Msa0736120:intron 20.0%
!! AAGGATAGAAAATAATTATC+AGG + chr5_1:52079859-52079878 Msa0736120:intron 20.0%
!! TAACATTCAAATTGAAAATG+AGG + chr5_1:52079992-52080011 Msa0736120:intron 20.0%
!! AACATTCAAATTGAAAATGA+GGG + chr5_1:52079993-52080012 Msa0736120:intron 20.0%
!! AGCAAAACTATAAATCTAAA+AGG - chr5_1:52080604-52080623 None:intergenic 20.0%
! AGAAAACAAAATAACTAGCT+AGG + chr5_1:52078991-52079010 Msa0736120:intron 25.0%
!!! ATCATGAACCAATCTTATTT+TGG + chr5_1:52079072-52079091 Msa0736120:intron 25.0%
! TACAAACACCAAAATAAGAT+TGG - chr5_1:52079083-52079102 None:intergenic 25.0%
!! GTTTGTATTTTGCATATTGT+AGG + chr5_1:52079096-52079115 Msa0736120:intron 25.0%
!! TTTTGCATATTGTAGGTATT+TGG + chr5_1:52079103-52079122 Msa0736120:intron 25.0%
!!! AATTTCCATCTTACTTTTTC+TGG + chr5_1:52079525-52079544 Msa0736120:intron 25.0%
! AATGGAAATACTTGTCAATA+TGG - chr5_1:52079578-52079597 None:intergenic 25.0%
! TATTTCCATTTAATGTGTGA+TGG + chr5_1:52079588-52079607 Msa0736120:intron 25.0%
! ATATTGAATGATTGCATGAA+GGG - chr5_1:52079699-52079718 None:intergenic 25.0%
! TTCTTAGATACCTTAAAGTT+TGG - chr5_1:52079803-52079822 None:intergenic 25.0%
! AGGGTTCTATAAATATTCTA+GGG + chr5_1:52080012-52080031 Msa0736120:intron 25.0%
! ACATCAAAATTTAAAGGTCT+GGG - chr5_1:52080167-52080186 None:intergenic 25.0%
! TACATCAAAATTTAAAGGTC+TGG - chr5_1:52080168-52080187 None:intergenic 25.0%
! TAGGATATATCAAACACAAA+TGG - chr5_1:52080254-52080273 None:intergenic 25.0%
! TTGTGTTTGATATATCCTAT+AGG + chr5_1:52080255-52080274 Msa0736120:intron 25.0%
! GTACATGAATAATTATATCC+TGG + chr5_1:52080688-52080707 Msa0736120:three_prime_UTR 25.0%
TTGAGAGATAAACAGTTTGA+TGG + chr5_1:52078419-52078438 Msa0736120:intron 30.0%
TTCTTAGATACCTTAAAGCT+TGG + chr5_1:52078732-52078751 Msa0736120:intron 30.0%
GAGCAAGTAAAACAATAGTT+AGG + chr5_1:52078966-52078985 Msa0736120:intron 30.0%
ACTGGAATATATTTCATGTC+TGG - chr5_1:52079050-52079069 None:intergenic 30.0%
! AAGATTGGTTCATGATTAAC+TGG - chr5_1:52079068-52079087 None:intergenic 30.0%
! TTTCAAGTAAGATATTGACC+TGG - chr5_1:52079235-52079254 None:intergenic 30.0%
TCATTCCAGAAAAAGTAAGA+TGG - chr5_1:52079533-52079552 None:intergenic 30.0%
CAATACCATCACACATTAAA+TGG - chr5_1:52079596-52079615 None:intergenic 30.0%
ACAACATTACCCATAATGTT+TGG + chr5_1:52079662-52079681 Msa0736120:intron 30.0%
GATATTGAATGATTGCATGA+AGG - chr5_1:52079700-52079719 None:intergenic 30.0%
TGAAATCCAACCAAACTTTA+AGG + chr5_1:52079790-52079809 Msa0736120:intron 30.0%
TAGATACCTTAAAGTTTGGT+TGG - chr5_1:52079799-52079818 None:intergenic 30.0%
GAGGGTTCTATAAATATTCT+AGG + chr5_1:52080011-52080030 Msa0736120:intron 30.0%
GGGTTCTATAAATATTCTAG+GGG + chr5_1:52080013-52080032 Msa0736120:intron 30.0%
GGTTCTATAAATATTCTAGG+GGG + chr5_1:52080014-52080033 Msa0736120:intron 30.0%
TTCTAGCATTCATACTGAAT+AGG + chr5_1:52080088-52080107 Msa0736120:intron 30.0%
ATTCATACTGAATAGGTAGA+AGG + chr5_1:52080095-52080114 Msa0736120:intron 30.0%
TTCATACTGAATAGGTAGAA+GGG + chr5_1:52080096-52080115 Msa0736120:intron 30.0%
TTATGTATGTTTGCACCTAT+AGG - chr5_1:52080273-52080292 None:intergenic 30.0%
AGTTATCACATTTATTGCTG+TGG + chr5_1:52080417-52080436 Msa0736120:CDS 30.0%
TTTCACTCATATCCTCTTAT+AGG + chr5_1:52080455-52080474 Msa0736120:CDS 30.0%
TTTGCTAAATAGCCTATAAG+AGG - chr5_1:52080470-52080489 None:intergenic 30.0%
ATTCATGTACACATCACAAA+GGG - chr5_1:52080678-52080697 None:intergenic 30.0%
TATTCATGTACACATCACAA+AGG - chr5_1:52080679-52080698 None:intergenic 30.0%
CATGAATAATTATATCCTGG+TGG + chr5_1:52080691-52080710 Msa0736120:three_prime_UTR 30.0%
ATTCACATGTTTCAGCAAAG+CGG - chr5_1:52078478-52078497 None:intergenic 35.0%
! CTCTATGTTTCTTTGATGGT+TGG - chr5_1:52078949-52078968 None:intergenic 35.0%
CTTGCTCTATGTTTCTTTGA+TGG - chr5_1:52078953-52078972 None:intergenic 35.0%
GGAATATATTTCATGTCTGG+TGG - chr5_1:52079047-52079066 None:intergenic 35.0%
ATATCCTGCACAAATACCAT+TGG - chr5_1:52079135-52079154 None:intergenic 35.0%
!! ATGAGAGTGAACGTTTTGTT+GGG - chr5_1:52079269-52079288 None:intergenic 35.0%
! TATGAGAGTGAACGTTTTGT+TGG - chr5_1:52079270-52079289 None:intergenic 35.0%
! TTAAGTCACGTTTGCTACAT+TGG - chr5_1:52079412-52079431 None:intergenic 35.0%
AAACGTGACTTAAGTCACTT+TGG + chr5_1:52079419-52079438 Msa0736120:intron 35.0%
! AACGTGACTTAAGTCACTTT+GGG + chr5_1:52079420-52079439 Msa0736120:intron 35.0%
!!! TAGGAGTGAGTGTTTTTAGT+TGG + chr5_1:52079494-52079513 Msa0736120:intron 35.0%
!!! CTTACTTTTTCTGGAATGAG+AGG + chr5_1:52079534-52079553 Msa0736120:intron 35.0%
CATGCTCAACCAAACATTAT+GGG - chr5_1:52079674-52079693 None:intergenic 35.0%
ACATGCTCAACCAAACATTA+TGG - chr5_1:52079675-52079694 None:intergenic 35.0%
! GTTGGATTTCAGTAACTTGT+TGG - chr5_1:52079781-52079800 None:intergenic 35.0%
TTCAAATATTACAGGGTAGC+TGG + chr5_1:52080129-52080148 Msa0736120:intron 35.0%
GTTCTATACCTTGCTGAATA+TGG + chr5_1:52080322-52080341 Msa0736120:CDS 35.0%
GAGGGAGTCATAATATTGTA+AGG - chr5_1:52080559-52080578 None:intergenic 35.0%
AAGGAAATGACCAACGATTA+GGG - chr5_1:52080585-52080604 None:intergenic 35.0%
AAAGGAAATGACCAACGATT+AGG - chr5_1:52080586-52080605 None:intergenic 35.0%
! GTTAGCTGGTTGAAAAGTGT+GGG - chr5_1:52078360-52078379 None:intergenic 40.0%
ATCTCTCAACCCATTCAGAA+CGG - chr5_1:52078408-52078427 None:intergenic 40.0%
!! GGTACTGATACCAAGCTTTA+AGG - chr5_1:52078745-52078764 None:intergenic 40.0%
TTAGGCATAGTTGAAGAACG+GGG - chr5_1:52079188-52079207 None:intergenic 40.0%
CTTAGGCATAGTTGAAGAAC+GGG - chr5_1:52079189-52079208 None:intergenic 40.0%
CCTTAGGCATAGTTGAAGAA+CGG - chr5_1:52079190-52079209 None:intergenic 40.0%
TTCAACTATGCCTAAGGCTT+GGG + chr5_1:52079193-52079212 Msa0736120:CDS 40.0%
AAAAAGAAAGCCCAAGCCTT+AGG - chr5_1:52079206-52079225 None:intergenic 40.0%
!! AACTTGTGTGCGGAGTATTT+TGG - chr5_1:52079301-52079320 None:intergenic 40.0%
!! AACGTGAGTTAACTTGTGTG+CGG - chr5_1:52079311-52079330 None:intergenic 40.0%
TACACGAGTTAATTCACGCT+GGG + chr5_1:52079351-52079370 Msa0736120:intron 40.0%
ACATACATAATCCTAGCTGC+TGG + chr5_1:52080283-52080302 Msa0736120:CDS 40.0%
AGTTCAGCTTGTGGATCTTT+CGG + chr5_1:52080364-52080383 Msa0736120:CDS 40.0%
!! ACTAGCATTGCTGCTTTCAA+TGG + chr5_1:52080529-52080548 Msa0736120:CDS 40.0%
! CATGTACTTTGTTATCCACC+AGG - chr5_1:52080709-52080728 None:intergenic 40.0%
!! TAGTCTCCTAGCTTTGGTCT+TGG - chr5_1:52078308-52078327 None:intergenic 45.0%
AGACCAAAGCTAGGAGACTA+TGG + chr5_1:52078308-52078327 Msa0736120:CDS 45.0%
GACCAAAGCTAGGAGACTAT+GGG + chr5_1:52078309-52078328 Msa0736120:CDS 45.0%
AACCCATAGTCTCCTAGCTT+TGG - chr5_1:52078314-52078333 None:intergenic 45.0%
!! TATGGGTTAGCAACTCATCG+TGG + chr5_1:52078326-52078345 Msa0736120:CDS 45.0%
! GGTTAGCTGGTTGAAAAGTG+TGG - chr5_1:52078361-52078380 None:intergenic 45.0%
TCTTGATGTCGAAAGCAACG+GGG - chr5_1:52078382-52078401 None:intergenic 45.0%
GTCTTGATGTCGAAAGCAAC+GGG - chr5_1:52078383-52078402 None:intergenic 45.0%
GGTCTTGATGTCGAAAGCAA+CGG - chr5_1:52078384-52078403 None:intergenic 45.0%
! ATCAAGACCACCGTTCTGAA+TGG + chr5_1:52078395-52078414 Msa0736120:CDS 45.0%
! TCAAGACCACCGTTCTGAAT+GGG + chr5_1:52078396-52078415 Msa0736120:CDS 45.0%
AGCGGCTCAAGTATTCATGT+GGG - chr5_1:52078460-52078479 None:intergenic 45.0%
AAGCGGCTCAAGTATTCATG+TGG - chr5_1:52078461-52078480 None:intergenic 45.0%
!! AGGTATTTGGTGCATGCCAA+TGG + chr5_1:52079116-52079135 Msa0736120:intron 45.0%
CATGCCAATGGTATTTGTGC+AGG + chr5_1:52079128-52079147 Msa0736120:CDS 45.0%
CCGTTCTTCAACTATGCCTA+AGG + chr5_1:52079187-52079206 Msa0736120:CDS 45.0%
CTTCAACTATGCCTAAGGCT+TGG + chr5_1:52079192-52079211 Msa0736120:CDS 45.0%
! GGCTTTCTTTTTGCTTGACC+AGG + chr5_1:52079214-52079233 Msa0736120:CDS 45.0%
CAGCGTGAATTAACTCGTGT+AGG - chr5_1:52079352-52079371 None:intergenic 45.0%
CTACACGAGTTAATTCACGC+TGG + chr5_1:52079350-52079369 Msa0736120:intron 45.0%
CTGCATGACTTAAGTCACGT+GGG + chr5_1:52079451-52079470 Msa0736120:intron 45.0%
TGCATGACTTAAGTCACGTG+GGG + chr5_1:52079452-52079471 Msa0736120:intron 45.0%
TTAATACAGCTCCAGCAGCT+AGG - chr5_1:52080297-52080316 None:intergenic 45.0%
TGCTGGAGCTGTATTAACAG+AGG + chr5_1:52080300-52080319 Msa0736120:CDS 45.0%
TAGGGACTCCATATTCAGCA+AGG - chr5_1:52080333-52080352 None:intergenic 45.0%
ACAAGTCAACAACTCCCACA+AGG + chr5_1:52080504-52080523 Msa0736120:CDS 45.0%
AGCAATGCTAGTGTCCTTGT+GGG - chr5_1:52080521-52080540 None:intergenic 45.0%
!!! TCTAAAATATTAATTTTATT+AGG + chr5_1:52079634-52079653 Msa0736120:intron 5.0%
!! AAAAGTAAATAAAAATTATA+GGG + chr5_1:52079964-52079983 Msa0736120:intron 5.0%
!! AGCTTTGGTCTTGGTGGTAC+AGG - chr5_1:52078299-52078318 None:intergenic 50.0%
GTACCACCAAGACCAAAGCT+AGG + chr5_1:52078299-52078318 Msa0736120:CDS 50.0%
!! TCTCCTAGCTTTGGTCTTGG+TGG - chr5_1:52078305-52078324 None:intergenic 50.0%
TCTCAACCCATTCAGAACGG+TGG - chr5_1:52078405-52078424 None:intergenic 50.0%
! GACACAAGAAGTGCAAGACG+AGG + chr5_1:52078891-52078910 Msa0736120:intron 50.0%
!! TCAAGTGAGTTGACTCGCGT+AGG - chr5_1:52079383-52079402 None:intergenic 50.0%
CCACGTGACTTAAGTCATGC+AGG - chr5_1:52079453-52079472 None:intergenic 50.0%
CCTGCATGACTTAAGTCACG+TGG + chr5_1:52079450-52079469 Msa0736120:intron 50.0%
GAATATGGAGTCCCTACTGC+AGG + chr5_1:52080337-52080356 Msa0736120:CDS 50.0%
CTGAACTCCATCCTGCAGTA+GGG - chr5_1:52080351-52080370 None:intergenic 50.0%
!! TGGGAGTTGTTGACTTGTGC+TGG - chr5_1:52080502-52080521 None:intergenic 50.0%
CAGCAATGCTAGTGTCCTTG+TGG - chr5_1:52080522-52080541 None:intergenic 50.0%
GACCAACGATTAGGGACAGA+GGG - chr5_1:52080577-52080596 None:intergenic 50.0%
TGACCAACGATTAGGGACAG+AGG - chr5_1:52080578-52080597 None:intergenic 50.0%
! TCGAAAGCAACGGGGTTAGC+TGG - chr5_1:52078374-52078393 None:intergenic 55.0%
ATGGAGTCCCTACTGCAGGA+TGG + chr5_1:52080341-52080360 Msa0736120:CDS 55.0%
GCTGAACTCCATCCTGCAGT+AGG - chr5_1:52080352-52080371 None:intergenic 55.0%
GCAGGATGGAGTTCAGCTTG+TGG + chr5_1:52080355-52080374 Msa0736120:CDS 55.0%
CTCCCTCTGTCCCTAATCGT+TGG + chr5_1:52080572-52080591 Msa0736120:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 52078287 52080742 52078287 ID=Msa0736120;Name=Msa0736120
chr5_1 mRNA 52078287 52080742 52078287 ID=Msa0736120-mRNA-1;Parent=Msa0736120;Name=Msa0736120-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.33|0.66|1|1|3|187|180
chr5_1 exon 52078287 52078432 52078287 ID=Msa0736120-mRNA-1:exon:14682;Parent=Msa0736120-mRNA-1
chr5_1 exon 52079118 52079235 52079118 ID=Msa0736120-mRNA-1:exon:14683;Parent=Msa0736120-mRNA-1
chr5_1 exon 52080277 52080742 52080277 ID=Msa0736120-mRNA-1:exon:14684;Parent=Msa0736120-mRNA-1
chr5_1 CDS 52078287 52078432 52078287 ID=Msa0736120-mRNA-1:cds;Parent=Msa0736120-mRNA-1
chr5_1 CDS 52079118 52079235 52079118 ID=Msa0736120-mRNA-1:cds;Parent=Msa0736120-mRNA-1
chr5_1 CDS 52080277 52080555 52080277 ID=Msa0736120-mRNA-1:cds;Parent=Msa0736120-mRNA-1
chr5_1 three_prime_UTR 52080556 52080742 52080556 ID=Msa0736120-mRNA-1:three_prime_utr;Parent=Msa0736120-mRNA-1
Gene Sequence

>Msa0736120

ATGGGAGAACCTGTACCACCAAGACCAAAGCTAGGAGACTATGGGTTAGCAACTCATCGTGGTCAACTGACCCACACTTTTCAACCAGCTAACCCCGTTGCTTTCGACATCAAGACCACCGTTCTGAATGGGTTGAGAGATAAACAGTATTTGGTGCATGCCAATGGTATTTGTGCAGGATATTCACTATTCTCAGCAGTCATTGTTGCTGTGCCCCGTTCTTCAACTATGCCTAAGGCTTGGGCTTTCTTTTTGCTTGACCAGGTGCAAACATACATAATCCTAGCTGCTGGAGCTGTATTAACAGAGGTTCTATACCTTGCTGAATATGGAGTCCCTACTGCAGGATGGAGTTCAGCTTGTGGATCTTTCGGTTCATTTTGTCACAAGATCAAAGCTTCATTAGTTATCACATTTATTGCTGTGGTTTGCTATATATTGCTTTCACTCATATCCTCTTATAGGCTATTTAGCAAATATGATGCACCAGCACAAGTCAACAACTCCCACAAGGACACTAGCATTGCTGCTTTCAATGGCTGA

Protein sequence

>Msa0736120

MGEPVPPRPKLGDYGLATHRGQLTHTFQPANPVAFDIKTTVLNGLRDKQYLVHANGICAGYSLFSAVIVAVPRSSTMPKAWAFFLLDQVQTYIILAAGAVLTEVLYLAEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILLSLISSYRLFSKYDAPAQVNNSHKDTSIAAFNG*