AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0824750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824750 MtrunA17_Chr5g0445571 96.915 551 14 1 1 551 1 548 0.0 1120
Msa0824750 MtrunA17_Chr3g0101151 59.964 552 187 10 1 548 1 522 0.0 633
Msa0824750 MtrunA17_Chr3g0090551 35.379 554 240 23 1 479 1 511 7.91e-64 221
Msa0824750 MtrunA17_Chr5g0396381 35.401 387 186 14 114 479 181 524 1.92e-46 173
Msa0824750 MtrunA17_Chr4g0020571 51.974 152 66 2 335 479 321 472 7.09e-38 148
Msa0824750 MtrunA17_Chr4g0020571 29.258 229 121 6 1 208 1 209 3.16e-16 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824750 AT2G05160.2 42.355 569 259 16 1 544 1 525 7.18e-131 392
Msa0824750 AT2G05160.1 42.355 569 259 16 1 544 1 525 7.18e-131 392
Msa0824750 AT2G05160.3 46.751 477 212 12 1 466 1 446 4.49e-129 386
Msa0824750 AT3G52980.1 46.020 402 171 11 1 395 1 363 6.09e-102 313
Msa0824750 AT3G51950.1 31.952 579 256 20 1 546 1 474 1.79e-58 204
Msa0824750 AT3G51950.3 31.952 579 256 20 1 546 1 474 1.79e-58 204
Msa0824750 AT3G51950.2 31.952 579 256 20 1 546 1 474 1.79e-58 204
Msa0824750 AT3G51950.4 31.952 579 256 20 1 546 1 474 1.79e-58 204
Msa0824750 AT3G21100.2 32.177 519 264 20 1 479 1 471 8.41e-53 189
Msa0824750 AT3G21100.1 32.177 519 264 20 1 479 1 471 8.41e-53 189
Msa0824750 AT3G21100.4 32.115 520 264 20 1 479 1 472 3.80e-52 188
Msa0824750 AT3G21100.3 32.115 520 264 20 1 479 1 472 3.80e-52 188
Msa0824750 AT5G12440.4 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.11 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.12 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.7 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.1 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.9 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.2 36.306 314 145 12 187 479 231 510 3.02e-42 160
Msa0824750 AT5G12440.3 36.306 314 145 12 187 479 262 541 6.79e-42 160
Msa0824750 AT5G12440.10 36.306 314 145 12 187 479 262 541 6.79e-42 160
Msa0824750 AT5G12440.8 36.306 314 145 12 187 479 262 541 6.79e-42 160
Msa0824750 AT5G12440.5 36.306 314 145 12 187 479 262 541 6.79e-42 160
Msa0824750 AT5G12440.6 36.306 314 145 12 187 479 262 541 6.79e-42 160
Msa0824750 AT3G63450.6 51.656 151 57 3 329 479 39 173 6.59e-35 133
Msa0824750 AT1G51520.1 54.545 110 50 0 316 425 245 354 3.45e-34 134
Msa0824750 AT3G63450.2 53.103 145 52 3 335 479 153 281 6.08e-34 133
Msa0824750 AT3G63450.2 56.452 62 27 0 1 62 1 62 9.78e-14 73.6
Msa0824750 AT3G63450.1 53.103 145 52 3 335 479 153 281 6.08e-34 133
Msa0824750 AT3G63450.1 56.452 62 27 0 1 62 1 62 9.78e-14 73.6
Msa0824750 AT1G51520.2 54.545 110 50 0 316 425 245 354 6.85e-34 135
Msa0824750 AT3G63450.3 53.103 145 54 4 335 479 153 283 1.17e-33 132
Msa0824750 AT3G63450.3 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0824750 AT3G63450.4 53.103 145 54 4 335 479 153 283 1.17e-33 132
Msa0824750 AT3G63450.4 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0824750 AT3G63450.5 53.103 145 54 4 335 479 153 283 1.17e-33 132
Msa0824750 AT3G63450.5 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0824750 AT3G63450.7 53.103 145 54 4 335 479 153 283 1.41e-33 132
Msa0824750 AT3G63450.7 56.452 62 27 0 1 62 1 62 1.13e-13 73.2
Msa0824750 AT1G51530.2 36.496 137 71 4 348 479 185 310 3.93e-12 68.6

Find 137 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCATTTCACCTCATTT+TGG 0.145853 5_3:+64239865 Msa0824750:CDS
TGAAACTGTGAGAATGATTT+TGG 0.186946 5_3:+64237378 Msa0824750:CDS
CATCGGTGAAGTCGTCTTTA+AGG 0.237792 5_3:+64236175 Msa0824750:CDS
AAAGAGAGAGAAACAGAAAA+AGG 0.247509 5_3:+64235017 Msa0824750:five_prime_UTR
AAAATCATTCTCACAGTTTC+AGG 0.261214 5_3:-64237376 None:intergenic
TTCAAGTTCCATCTTCCTAT+TGG 0.269145 5_3:+64236321 Msa0824750:CDS
TGCAGATCATTTCAATTTCC+AGG 0.277618 5_3:+64240012 Msa0824750:intron
ACATAATACAGTTCTTCTTT+TGG 0.290842 5_3:+64240703 Msa0824750:three_prime_UTR
GAAAATGCTAGAAAGATTAT+TGG 0.297193 5_3:+64236086 Msa0824750:CDS
GTGTGCTTGTGAAACCTTAC+AGG 0.303127 5_3:+64237434 Msa0824750:CDS
TCCAATGGAAAATGATAAAT+AGG 0.307495 5_3:+64240595 Msa0824750:CDS
CACCAGTTCCAGTTGCAAAA+AGG 0.309894 5_3:-64240813 None:intergenic
CTATGGTTCCCATAACTTCT+TGG 0.316770 5_3:-64239751 None:intergenic
ACAAACGCAATTGCTGAGTT+TGG 0.320917 5_3:+64236421 Msa0824750:CDS
CGGACAACATGCAGTGGTTC+TGG 0.321883 5_3:+64237045 Msa0824750:CDS
TCAAGTTCCATCTTCCTATT+GGG 0.324176 5_3:+64236322 Msa0824750:CDS
AAGAAAGAGTTTGTTGCCTT+TGG 0.325097 5_3:-64240675 None:intergenic
TAATTCATTCCCGTAAATTC+AGG 0.326064 5_3:-64236371 None:intergenic
ATACTATGATAAATATAAAA+AGG 0.328732 5_3:+64236820 Msa0824750:CDS
CAAAACTGATCTTCAAATAA+TGG 0.329252 5_3:+64236199 Msa0824750:CDS
CCTTGTTGAGGGTTGACATT+AGG 0.334473 5_3:-64236254 None:intergenic
CAATGCAAATCCTGAATTTA+CGG 0.340099 5_3:+64236361 Msa0824750:CDS
TGCCAGCAGAAAAGAATGTT+TGG 0.350390 5_3:+64237334 Msa0824750:CDS
CATTATTTGAAGATCAGTTT+TGG 0.350768 5_3:-64236198 None:intergenic
AAACCCAAAATGAGGTGAAA+TGG 0.352315 5_3:-64239869 None:intergenic
GGAATCAGTGTCAGTATTCT+TGG 0.353353 5_3:-64240071 None:intergenic
ATCTCTAAGTAGACAGTTGA+TGG 0.353788 5_3:+64239774 Msa0824750:CDS
GCTGAGTTTGGAGAATCATT+TGG 0.355136 5_3:+64236433 Msa0824750:CDS
GATGTTTCTGCTGTCAGTTT+TGG 0.357083 5_3:+64236512 Msa0824750:CDS
CAGAACAATGCTTGAAGAAC+AGG 0.358987 5_3:-64235066 None:intergenic
AGAAATATGGCTGAAAGGTT+TGG 0.362866 5_3:+64240900 Msa0824750:three_prime_UTR
ACGGAGATAATGCCGGAAAA+TGG 0.364430 5_3:-64236283 None:intergenic
TTGGGTATGTTGAAGATGTT+AGG 0.367518 5_3:+64237305 Msa0824750:CDS
AACCTTTCAGAATGTGGTTA+TGG 0.370195 5_3:+64241000 Msa0824750:three_prime_UTR
ACCTTTGTCTTCTCCCTGTA+AGG 0.370558 5_3:-64237448 None:intergenic
AAAAGTTTACTATAGAAATA+TGG 0.373829 5_3:+64240844 Msa0824750:three_prime_UTR
CTAGAAAGAAAGCTGCTCAT+AGG 0.388511 5_3:-64241043 None:intergenic
TTATTCAACGCATGATTTAG+AGG 0.390101 5_3:-64240043 None:intergenic
TTGACATTAGGTGGCGGAAT+TGG 0.398675 5_3:-64236242 None:intergenic
AAATTCAGGATTTGCATTGC+TGG 0.403668 5_3:-64236357 None:intergenic
TATGCAGTTCCAAGAAGTTA+TGG 0.410433 5_3:+64239742 Msa0824750:intron
AACAGCAAGACCTCGAGTTC+CGG 0.412720 5_3:-64236468 None:intergenic
AATGCAAATCCTGAATTTAC+GGG 0.416071 5_3:+64236362 Msa0824750:CDS
TTGGTGGAAAAGCTACAAAA+AGG 0.422303 5_3:+64236531 Msa0824750:CDS
CTGATTCCTCTGGAGGGAAT+AGG 0.424239 5_3:+64240086 Msa0824750:CDS
GCCAGCAGAAAAGAATGTTT+GGG 0.424611 5_3:+64237335 Msa0824750:CDS
AGCCAGCGACATGGTAAGTC+TGG 0.430698 5_3:+64236872 Msa0824750:CDS
TTTGGTTTCTAGAACATCCT+TGG 0.430976 5_3:+64240918 Msa0824750:three_prime_UTR
AGACAATGGCGAACAAGAAA+TGG 0.433416 5_3:+64236124 Msa0824750:CDS
GGAAATGCAAATGGACTGTC+GGG 0.437019 5_3:-64240575 None:intergenic
ATAGTATTCGGCTAATTGAT+AGG 0.438290 5_3:+64236927 Msa0824750:CDS
ATCTGTCATTATTTCAGTAA+AGG 0.443297 5_3:+64236590 Msa0824750:CDS
TGCTCCAAAATACATTCAAA+AGG 0.443413 5_3:+64237075 Msa0824750:CDS
AACCCAAAATGAGGTGAAAT+GGG 0.452356 5_3:-64239868 None:intergenic
AATATTCAGCAAATATATAC+AGG 0.458344 5_3:+64240764 Msa0824750:three_prime_UTR
ACTGTCTACTTAGAGATCTA+TGG 0.458496 5_3:-64239768 None:intergenic
ATGCAGTTCCAAGAAGTTAT+GGG 0.460814 5_3:+64239743 Msa0824750:intron
TTGGTTTCTAGAACATCCTT+GGG 0.463267 5_3:+64240919 Msa0824750:three_prime_UTR
GGTAGATTGTGGATCCCAAT+AGG 0.466096 5_3:-64236336 None:intergenic
TCGCGCGACTCAATAGTATT+CGG 0.471471 5_3:+64236915 Msa0824750:CDS
TAGAAAGAAAGCTGCTCATA+GGG 0.476422 5_3:-64241042 None:intergenic
TCAGTGAAAGTGCTGTCAGC+TGG 0.477338 5_3:-64237148 None:intergenic
CAGTCCATTTGCATTTCCAA+TGG 0.489547 5_3:+64240580 Msa0824750:CDS
TTAGTTTCAGAAACAAATAC+AGG 0.489736 5_3:+64240625 Msa0824750:three_prime_UTR
AAATATATACAGGCTGAAGA+AGG 0.495810 5_3:+64240774 Msa0824750:three_prime_UTR
GATTTAGAGGTTCCGCAGCC+TGG 0.497491 5_3:-64240030 None:intergenic
AGGTGGCGGAATTGGCATCA+TGG 0.499716 5_3:-64236234 None:intergenic
CGAACAAGAAATGGCTAGGT+TGG 0.502766 5_3:+64236133 Msa0824750:CDS
CACAATTTACTCAACTAGCT+TGG 0.503729 5_3:+64240728 Msa0824750:three_prime_UTR
ATTTACGGGAATGAATTACA+TGG 0.507052 5_3:+64236376 Msa0824750:CDS
AATGGCTTAAACCTTGTTGA+GGG 0.515579 5_3:-64236265 None:intergenic
ACTATAGAAATATGGCTGAA+AGG 0.519836 5_3:+64240895 Msa0824750:three_prime_UTR
CATTTGGATCATGTGAATAC+CGG 0.523621 5_3:+64236449 Msa0824750:CDS
GCTGTTAATGATTACAACAA+TGG 0.523781 5_3:+64236485 Msa0824750:CDS
TATAGAAATATGGCTGAAGA+AGG 0.525069 5_3:+64240854 Msa0824750:three_prime_UTR
CAGGAGGTACCATGATAGAA+TGG 0.527118 5_3:+64239481 Msa0824750:intron
CAGAGTGCTCCATTCTATCA+TGG 0.527589 5_3:-64239490 None:intergenic
TGTTGAGGGTTGACATTAGG+TGG 0.528211 5_3:-64236251 None:intergenic
TCATTTCAATTTCCAGGCTG+CGG 0.529484 5_3:+64240018 Msa0824750:CDS
AATACTGACACTGATTCCTC+TGG 0.530154 5_3:+64240076 Msa0824750:CDS
GGAAATCCTCATTATGTTCG+TGG 0.530432 5_3:+64237406 Msa0824750:CDS
TTGGACAACCTTTCAGAATG+TGG 0.530767 5_3:+64240994 Msa0824750:three_prime_UTR
AAATGAGGTGAAATGGGAAA+AGG 0.531747 5_3:-64239862 None:intergenic
GTCAATTGCTTCGCTGCCGA+TGG 0.532551 5_3:+64236796 Msa0824750:CDS
GATTCAAACTTTATAAGTAG+AGG 0.533870 5_3:-64234892 None:intergenic
GCTCCAAAATACATTCAAAA+GGG 0.534969 5_3:+64237076 Msa0824750:CDS
AGTAAAGGTTACTGTAGGCA+TGG 0.535811 5_3:+64236605 Msa0824750:CDS
TGGAAATGCAAATGGACTGT+CGG 0.541995 5_3:-64240576 None:intergenic
ACTTCACCGATGATGTGGTC+AGG 0.542534 5_3:-64236164 None:intergenic
TGACAGCACTTTCACTGAAG+AGG 0.547716 5_3:+64237153 Msa0824750:CDS
AAATGGCTTAAACCTTGTTG+AGG 0.548876 5_3:-64236266 None:intergenic
ATTTCAGTAAAGGTTACTGT+AGG 0.554494 5_3:+64236600 Msa0824750:CDS
TGAAATGGGAAAAGGTCGTC+GGG 0.556222 5_3:-64239854 None:intergenic
TGTTAGCAAGATAAGAGCTA+TGG 0.556939 5_3:+64236010 Msa0824750:exon
TCTTGTCCTGACCACATCAT+CGG 0.557055 5_3:+64236158 Msa0824750:CDS
TGTGGATCCCAATAGGAAGA+TGG 0.559950 5_3:-64236329 None:intergenic
GACAGTTTCTCTCATATGCA+TGG 0.561615 5_3:+64236665 Msa0824750:CDS
ATCCATAACCACATTCTGAA+AGG 0.561674 5_3:-64241002 None:intergenic
AGCCAGACTTACCATGTCGC+TGG 0.562095 5_3:-64236874 None:intergenic
AGAAGACAAAGGTTGTTGAA+AGG 0.562426 5_3:+64237458 Msa0824750:CDS
TCGATATTTGCAAAGTGATG+TGG 0.563281 5_3:-64239521 None:intergenic
GGCAGCGAAGCAATTGACAT+TGG 0.563893 5_3:-64236791 None:intergenic
CGAGAGCCACGAACATAATG+AGG 0.570909 5_3:-64237412 None:intergenic
GGAACTCTCAACGCATCCAT+AGG 0.573720 5_3:-64239892 None:intergenic
TGAAAGTTCAGCGGTGAAGA+CGG 0.575317 5_3:-64236302 None:intergenic
TATTTATCATAGTATGCCAT+CGG 0.579740 5_3:-64236812 None:intergenic
TTTGCATTGCTGGTAGATTG+TGG 0.579975 5_3:-64236347 None:intergenic
TCCATAGGAAACCCAAAATG+AGG 0.584131 5_3:-64239877 None:intergenic
GTTAGAACAGTGGAGGCCAA+AGG 0.587413 5_3:+64240659 Msa0824750:three_prime_UTR
ATGGCGAACAAGAAATGGCT+AGG 0.597763 5_3:+64236129 Msa0824750:CDS
AAATAATGACAGATCTTGAG+TGG 0.598237 5_3:-64236581 None:intergenic
GTGAAATGGGAAAAGGTCGT+CGG 0.599339 5_3:-64239855 None:intergenic
AATATATACAGGCTGAAGAA+GGG 0.600066 5_3:+64240775 Msa0824750:three_prime_UTR
TGGTTGATTTACAGGCCTCA+CGG 0.603591 5_3:+64237025 Msa0824750:intron
TCTATCTGAGCTAGTGACCC+TGG 0.610875 5_3:-64236728 None:intergenic
AGACGACTTCACCGATGATG+TGG 0.612232 5_3:-64236169 None:intergenic
ACTGACACTGATTCCTCTGG+AGG 0.617261 5_3:+64240079 Msa0824750:CDS
CCTAATGTCAACCCTCAACA+AGG 0.617801 5_3:+64236254 Msa0824750:CDS
CATGTGAATACCGGAACTCG+AGG 0.623739 5_3:+64236458 Msa0824750:CDS
GGTGAAGACGGAGATAATGC+CGG 0.634024 5_3:-64236290 None:intergenic
TGAGGGTTGACATTAGGTGG+CGG 0.637168 5_3:-64236248 None:intergenic
TGTATACCTATTCCCTCCAG+AGG 0.656241 5_3:-64240092 None:intergenic
TAATGATAATACTAGCAATG+AGG 0.661063 5_3:+64236691 Msa0824750:CDS
GCCTCACGGACAACATGCAG+TGG 0.661109 5_3:+64237039 Msa0824750:CDS
GTACAGAGTTAGAACAGTGG+AGG 0.665498 5_3:+64240652 Msa0824750:three_prime_UTR
CTGACACTGATTCCTCTGGA+GGG 0.669158 5_3:+64240080 Msa0824750:CDS
ACCACTGCATGTTGTCCGTG+AGG 0.679392 5_3:-64237040 None:intergenic
TGTGCTTGTGAAACCTTACA+GGG 0.679592 5_3:+64237435 Msa0824750:CDS
ACCTTACAGGGAGAAGACAA+AGG 0.680060 5_3:+64237447 Msa0824750:CDS
GATGGAACTTGAAAGTTCAG+CGG 0.682151 5_3:-64236311 None:intergenic
TTAACTGAGAGCCAGCGACA+TGG 0.684743 5_3:+64236863 Msa0824750:CDS
AGTGACCCTGGTGAAAACAT+CGG 0.686030 5_3:-64236716 None:intergenic
AAAGGTTACTGTAGGCATGG+AGG 0.699149 5_3:+64236608 Msa0824750:CDS
GAAGTACAGAGTTAGAACAG+TGG 0.699941 5_3:+64240649 Msa0824750:three_prime_UTR
GATGCGTTGAGAGTTCCAGA+TGG 0.726483 5_3:+64239898 Msa0824750:CDS
GAAATGCAAATGGACTGTCG+GGG 0.728060 5_3:-64240574 None:intergenic
ATATGAGAGAAACTGTCGTG+AGG 0.740773 5_3:-64236659 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTTGTTTTATTT+TGG + chr5_3:64235171-64235190 Msa0824750:intron 10.0%
!!! TTTTTTTATTTTGTTTTGAA+CGG + chr5_3:64235439-64235458 Msa0824750:intron 10.0%
!! ATACTATGATAAATATAAAA+AGG + chr5_3:64236820-64236839 Msa0824750:CDS 10.0%
!!! AAGTAAATTATTACATTTTT+TGG + chr5_3:64237193-64237212 Msa0824750:intron 10.0%
!! TCTTTAATAATTATTAACTT+CGG + chr5_3:64239449-64239468 Msa0824750:intron 10.0%
!! ATTTCAAGATTAAAATCTAA+AGG - chr5_3:64235387-64235406 None:intergenic 15.0%
!! TTAGTGAATAAAAAAACAAT+AGG - chr5_3:64235952-64235971 None:intergenic 15.0%
!! ATTATACGTATTAGTAAATT+TGG + chr5_3:64237253-64237272 Msa0824750:intron 15.0%
!!! TCTTTTCTTTTTGATAATAA+AGG + chr5_3:64237494-64237513 Msa0824750:intron 15.0%
!!! ATATTATAGTTCCTTATTTA+TGG + chr5_3:64238066-64238085 Msa0824750:intron 15.0%
!! ATAAATTATACAAGTTTGAA+GGG + chr5_3:64239218-64239237 Msa0824750:intron 15.0%
!!! AATTGTTTTAGTACTAAAAT+GGG - chr5_3:64240142-64240161 None:intergenic 15.0%
!!! AAATTGTTTTAGTACTAAAA+TGG - chr5_3:64240143-64240162 None:intergenic 15.0%
!! AAAAGTTTACTATAGAAATA+TGG + chr5_3:64240844-64240863 Msa0824750:three_prime_UTR 15.0%
!!! GTTTTTTAACTATAGAAATA+TGG + chr5_3:64240887-64240906 Msa0824750:three_prime_UTR 15.0%
!!! AAATAACTAGCTATATTTTT+TGG + chr5_3:64240975-64240994 Msa0824750:three_prime_UTR 15.0%
!!! AGTATTTTAAGATCTTTATA+TGG + chr5_3:64241100-64241119 Msa0824750:three_prime_UTR 15.0%
!!! GTGTTAAGTGTATTTATTTT+CGG - chr5_3:64234931-64234950 None:intergenic 20.0%
!!! ATTTTGGATTGTTTTGTAAA+AGG + chr5_3:64235187-64235206 Msa0824750:intron 20.0%
!!! TTTTGGATTGTTTTGTAAAA+GGG + chr5_3:64235188-64235207 Msa0824750:intron 20.0%
!!! TTAGTTCTTTAACATTTTGT+TGG + chr5_3:64235252-64235271 Msa0824750:intron 20.0%
!!! TAGTTCTTTAACATTTTGTT+GGG + chr5_3:64235253-64235272 Msa0824750:intron 20.0%
!! TTGAATTGTTATCATGAAAA+TGG + chr5_3:64235312-64235331 Msa0824750:intron 20.0%
!! TGAATTGTTATCATGAAAAT+GGG + chr5_3:64235313-64235332 Msa0824750:intron 20.0%
!!! AGAAAGTTATTTTCTATTGT+TGG + chr5_3:64235617-64235636 Msa0824750:intron 20.0%
!!! TATTTTCTATTGTTGGTTTT+TGG + chr5_3:64235573-64235592 Msa0824750:intron 20.0%
!!! TTATTTTAACTTGTTTCTGT+TGG + chr5_3:64235881-64235900 Msa0824750:intron 20.0%
!! ATTATCAAAAAGAAAAGACA+AGG - chr5_3:64237492-64237511 None:intergenic 20.0%
!! TAATTATTTACTGTTCATGT+TGG + chr5_3:64237567-64237586 Msa0824750:intron 20.0%
!! ATTTATGCTTCTGATTTAAA+TGG + chr5_3:64237599-64237618 Msa0824750:intron 20.0%
!! TTTATGCTTCTGATTTAAAT+GGG + chr5_3:64237600-64237619 Msa0824750:intron 20.0%
!!! TTTTCATTGATTATTGACAA+AGG + chr5_3:64237962-64237981 Msa0824750:intron 20.0%
!!! TTTCATTGATTATTGACAAA+GGG + chr5_3:64237963-64237982 Msa0824750:intron 20.0%
!! AACTTTACAAGCATAAATTA+TGG - chr5_3:64238226-64238245 None:intergenic 20.0%
!! AATTTATGCTTGTAAAGTTA+TGG + chr5_3:64238227-64238246 Msa0824750:intron 20.0%
!! ATAGTAATTGAGAGAATAAA+TGG - chr5_3:64238531-64238550 None:intergenic 20.0%
!!! TATAGTTTTTAAATGTTGTG+AGG + chr5_3:64238548-64238567 Msa0824750:intron 20.0%
!! CATAAATTATACAAGTTTGA+AGG + chr5_3:64239217-64239236 Msa0824750:intron 20.0%
!!! ATCATAACTTTGCATATTTT+AGG - chr5_3:64239283-64239302 None:intergenic 20.0%
!! TTAAAGAAAACATTCATCAT+AGG - chr5_3:64239436-64239455 None:intergenic 20.0%
!! TAAAAAACAAAAAACCTTAC+TGG + chr5_3:64239654-64239673 Msa0824750:intron 20.0%
!! CAGAACAATATATTCAAATT+CGG - chr5_3:64240296-64240315 None:intergenic 20.0%
!! AATATGATTTATGTCAAGAA+AGG - chr5_3:64240466-64240485 None:intergenic 20.0%
!! AATATTCAGCAAATATATAC+AGG + chr5_3:64240764-64240783 Msa0824750:three_prime_UTR 20.0%
! GATTCAAACTTTATAAGTAG+AGG - chr5_3:64234895-64234914 None:intergenic 25.0%
!! TTTTTCATCTTTCTGTTTCA+TGG + chr5_3:64235092-64235111 Msa0824750:five_prime_UTR 25.0%
!! TTTTCATCTTTCTGTTTCAT+GGG + chr5_3:64235093-64235112 Msa0824750:five_prime_UTR 25.0%
!! TATAAACATCTTTGTTTGCA+TGG + chr5_3:64235347-64235366 Msa0824750:intron 25.0%
! GAAATGTTAATGATGATCTA+AGG + chr5_3:64235545-64235564 Msa0824750:intron 25.0%
!!! GGTTAGTTATTTTCTATTGT+TGG + chr5_3:64235566-64235585 Msa0824750:intron 25.0%
! ATTTAATGCATAGCAGAAAA+GGG - chr5_3:64235707-64235726 None:intergenic 25.0%
! AATTTAATGCATAGCAGAAA+AGG - chr5_3:64235708-64235727 None:intergenic 25.0%
! CAAAAATAACACAAATTCTG+AGG - chr5_3:64235924-64235943 None:intergenic 25.0%
!!! ATAATCTTTCTAGCATTTTC+AGG - chr5_3:64236086-64236105 None:intergenic 25.0%
! GAAAATGCTAGAAAGATTAT+TGG + chr5_3:64236086-64236105 Msa0824750:CDS 25.0%
!! TATCTTCTTTTACAAGACAA+TGG + chr5_3:64236110-64236129 Msa0824750:CDS 25.0%
!! CATTATTTGAAGATCAGTTT+TGG - chr5_3:64236201-64236220 None:intergenic 25.0%
! CAAAACTGATCTTCAAATAA+TGG + chr5_3:64236199-64236218 Msa0824750:CDS 25.0%
! ATCTGTCATTATTTCAGTAA+AGG + chr5_3:64236590-64236609 Msa0824750:CDS 25.0%
! TAATGATAATACTAGCAATG+AGG + chr5_3:64236691-64236710 Msa0824750:CDS 25.0%
! TATTTATCATAGTATGCCAT+CGG - chr5_3:64236815-64236834 None:intergenic 25.0%
!!! CTCTAGTTTGAAATTTGTTA+TGG + chr5_3:64237005-64237024 Msa0824750:intron 25.0%
!!! ATTTGTTATGGTTGATTTAC+AGG + chr5_3:64237017-64237036 Msa0824750:intron 25.0%
! AAACAAGTGTCAATAAGTAT+AGG - chr5_3:64237223-64237242 None:intergenic 25.0%
! ATGTGTACAACTTCAAAAAA+TGG - chr5_3:64237727-64237746 None:intergenic 25.0%
! TCGTCTAAAAAAATGTTTGA+AGG + chr5_3:64237886-64237905 Msa0824750:intron 25.0%
! CGTCTAAAAAAATGTTTGAA+GGG + chr5_3:64237887-64237906 Msa0824750:intron 25.0%
!! TTCATTGATTATTGACAAAG+GGG + chr5_3:64237964-64237983 Msa0824750:intron 25.0%
!! CATTTTTCATAGTCATGTTT+AGG + chr5_3:64238013-64238032 Msa0824750:intron 25.0%
!!! ATGTTTAGGTTTTATGATGT+TGG + chr5_3:64238027-64238046 Msa0824750:intron 25.0%
! TAAAACAGTGACCATAAATA+AGG - chr5_3:64238080-64238099 None:intergenic 25.0%
! ACTCCAAAATATAAGAAAAC+TGG + chr5_3:64238410-64238429 Msa0824750:intron 25.0%
! CTCCAAAATATAAGAAAACT+GGG + chr5_3:64238411-64238430 Msa0824750:intron 25.0%
!! TTCCCAGTTTTCTTATATTT+TGG - chr5_3:64238416-64238435 None:intergenic 25.0%
!!! GATATTTTTGACCGAAAATA+TGG + chr5_3:64238449-64238468 Msa0824750:intron 25.0%
!! AAGTAACCTTTCCATATTTT+CGG - chr5_3:64238463-64238482 None:intergenic 25.0%
! TGAGGTGTATAAAAATGATT+TGG + chr5_3:64238566-64238585 Msa0824750:intron 25.0%
! GAGGTGTATAAAAATGATTT+GGG + chr5_3:64238567-64238586 Msa0824750:intron 25.0%
! TATTTCGAGAACTATAGTAA+TGG + chr5_3:64238907-64238926 Msa0824750:intron 25.0%
! AGTGTACATTGTATGTAATA+AGG + chr5_3:64239083-64239102 Msa0824750:intron 25.0%
! GTGTACATTGTATGTAATAA+GGG + chr5_3:64239084-64239103 Msa0824750:intron 25.0%
! TGGTTTATTTAACATCACAA+AGG + chr5_3:64239251-64239270 Msa0824750:intron 25.0%
!! CACTGGCAAATATAATATTT+TGG + chr5_3:64239408-64239427 Msa0824750:intron 25.0%
! TTTATAGAATCTAATCACAG+AGG - chr5_3:64239638-64239657 None:intergenic 25.0%
! TTCAATTAGCATAACAATGA+AGG - chr5_3:64239981-64240000 None:intergenic 25.0%
!! GTACTAAAACAATTTTCCTT+TGG + chr5_3:64240148-64240167 Msa0824750:intron 25.0%
!! TATCAAATTTGCCTTTTGAT+AGG - chr5_3:64240200-64240219 None:intergenic 25.0%
! GAATATATTGTTCTGCAATA+TGG + chr5_3:64240301-64240320 Msa0824750:intron 25.0%
!!! ATATGGTATTGGTTCAAAAT+TGG + chr5_3:64240318-64240337 Msa0824750:intron 25.0%
!!! TATGGTATTGGTTCAAAATT+GGG + chr5_3:64240319-64240338 Msa0824750:intron 25.0%
! TCCAATGGAAAATGATAAAT+AGG + chr5_3:64240595-64240614 Msa0824750:CDS 25.0%
!! TCCTATTTATCATTTTCCAT+TGG - chr5_3:64240599-64240618 None:intergenic 25.0%
! TTAGTTTCAGAAACAAATAC+AGG + chr5_3:64240625-64240644 Msa0824750:three_prime_UTR 25.0%
!! ACATAATACAGTTCTTCTTT+TGG + chr5_3:64240703-64240722 Msa0824750:three_prime_UTR 25.0%
!!! TTTGTTGTTGAAGTTTTTAG+TGG + chr5_3:64240948-64240967 Msa0824750:three_prime_UTR 25.0%
AAAGAGAGAGAAACAGAAAA+AGG + chr5_3:64235017-64235036 Msa0824750:five_prime_UTR 30.0%
AAGAGAGAGAAACAGAAAAA+GGG + chr5_3:64235018-64235037 Msa0824750:five_prime_UTR 30.0%
TTTGCAACATGCATACAAAT+TGG - chr5_3:64235229-64235248 None:intergenic 30.0%
! CTTGAAATGAATGATAGTGT+TGG + chr5_3:64235399-64235418 Msa0824750:intron 30.0%
AGTGATGACAGAGAAAATTT+AGG + chr5_3:64235740-64235759 Msa0824750:intron 30.0%
ATGTTTCTTTCTGTGTCTTT+AGG + chr5_3:64235814-64235833 Msa0824750:intron 30.0%
CAATGCAAATCCTGAATTTA+CGG + chr5_3:64236361-64236380 Msa0824750:CDS 30.0%
AATGCAAATCCTGAATTTAC+GGG + chr5_3:64236362-64236381 Msa0824750:CDS 30.0%
TAATTCATTCCCGTAAATTC+AGG - chr5_3:64236374-64236393 None:intergenic 30.0%
ATTTACGGGAATGAATTACA+TGG + chr5_3:64236376-64236395 Msa0824750:CDS 30.0%
GCTGTTAATGATTACAACAA+TGG + chr5_3:64236485-64236504 Msa0824750:CDS 30.0%
AAATAATGACAGATCTTGAG+TGG - chr5_3:64236584-64236603 None:intergenic 30.0%
ATTTCAGTAAAGGTTACTGT+AGG + chr5_3:64236600-64236619 Msa0824750:CDS 30.0%
! GGTAACTGTAGATATTTTCA+TGG + chr5_3:64236629-64236648 Msa0824750:CDS 30.0%
ATAGTATTCGGCTAATTGAT+AGG + chr5_3:64236927-64236946 Msa0824750:CDS 30.0%
TGCTCCAAAATACATTCAAA+AGG + chr5_3:64237075-64237094 Msa0824750:CDS 30.0%
GCTCCAAAATACATTCAAAA+GGG + chr5_3:64237076-64237095 Msa0824750:CDS 30.0%
! TCTCCCTTTTGAATGTATTT+TGG - chr5_3:64237082-64237101 None:intergenic 30.0%
AAAATCATTCTCACAGTTTC+AGG - chr5_3:64237379-64237398 None:intergenic 30.0%
! TGAAACTGTGAGAATGATTT+TGG + chr5_3:64237378-64237397 Msa0824750:CDS 30.0%
TATGATGAATGCTTATTCCT+CGG + chr5_3:64237664-64237683 Msa0824750:intron 30.0%
! TTTGAAGTTGTACACATAGT+AGG + chr5_3:64237730-64237749 Msa0824750:intron 30.0%
AGTAGGCACATATCTATATA+TGG + chr5_3:64237747-64237766 Msa0824750:intron 30.0%
!!! ACTAAGTTTTAGCTCTCTTA+CGG - chr5_3:64237835-64237854 None:intergenic 30.0%
TAAATTATGGACAATGGAAC+AGG - chr5_3:64238213-64238232 None:intergenic 30.0%
CAAGCATAAATTATGGACAA+TGG - chr5_3:64238219-64238238 None:intergenic 30.0%
CTTGTAAAGTTATGGTATCT+TGG + chr5_3:64238235-64238254 Msa0824750:intron 30.0%
! CAGTTTTGCATTGAAAAGTA+AGG + chr5_3:64238290-64238309 Msa0824750:intron 30.0%
! TAACTTGGTCGTATTTCTAT+AGG - chr5_3:64238342-64238361 None:intergenic 30.0%
AAATACGACCAAGTTATAGA+AGG + chr5_3:64238346-64238365 Msa0824750:intron 30.0%
! TTTTGACCGAAAATATGGAA+AGG + chr5_3:64238454-64238473 Msa0824750:intron 30.0%
TATGGAAAGGTTACTTGTAT+AGG + chr5_3:64238467-64238486 Msa0824750:intron 30.0%
GTTACTTGTATAGGAGAAAT+AGG + chr5_3:64238476-64238495 Msa0824750:intron 30.0%
GAATAAATGGAGAAAGGAAA+CGG - chr5_3:64238518-64238537 None:intergenic 30.0%
TTGAGAGAATAAATGGAGAA+AGG - chr5_3:64238524-64238543 None:intergenic 30.0%
CAAAAAAACAGAGAAAACAG+AGG - chr5_3:64238730-64238749 None:intergenic 30.0%
! AACTATAGTAATGGAGCAAA+TGG + chr5_3:64238916-64238935 Msa0824750:intron 30.0%
! ACTATAGTAATGGAGCAAAT+GGG + chr5_3:64238917-64238936 Msa0824750:intron 30.0%
ATTTATGTTTCCATGAGTAC+TGG + chr5_3:64239157-64239176 Msa0824750:intron 30.0%
TTATACAAGTTTGAAGGGTA+TGG + chr5_3:64239223-64239242 Msa0824750:intron 30.0%
TTAACTTCGGTATGTATTTC+AGG + chr5_3:64239462-64239481 Msa0824750:intron 30.0%
!! CCTAATTGTTTTTCTTCTTC+CGG + chr5_3:64239584-64239603 Msa0824750:intron 30.0%
AATTGTTCTACATTGTGAAC+CGG - chr5_3:64239606-64239625 None:intergenic 30.0%
! AACAAGCTTTTGAATTGCAA+AGG + chr5_3:64239806-64239825 Msa0824750:CDS 30.0%
CTACATTAAAACATACCATC+TGG - chr5_3:64239916-64239935 None:intergenic 30.0%
TTATTCAACGCATGATTTAG+AGG - chr5_3:64240046-64240065 None:intergenic 30.0%
TTTGTTCACAATTTCACTAG+AGG + chr5_3:64240240-64240259 Msa0824750:intron 30.0%
AATTTCACTAGAGGCTAAAA+TGG + chr5_3:64240249-64240268 Msa0824750:intron 30.0%
ATTGTTCTGCAATATGGTAT+TGG + chr5_3:64240307-64240326 Msa0824750:intron 30.0%
!!! ACTGAAATTTTAGTTGCAGA+TGG - chr5_3:64240397-64240416 None:intergenic 30.0%
GCAACTAAAATTTCAGTGAA+TGG + chr5_3:64240400-64240419 Msa0824750:intron 30.0%
ACTAAAATTTCAGTGAATGG+TGG + chr5_3:64240403-64240422 Msa0824750:intron 30.0%
! TTTTCCATTGGAAATGCAAA+TGG - chr5_3:64240587-64240606 None:intergenic 30.0%
AAATATATACAGGCTGAAGA+AGG + chr5_3:64240774-64240793 Msa0824750:three_prime_UTR 30.0%
AATATATACAGGCTGAAGAA+GGG + chr5_3:64240775-64240794 Msa0824750:three_prime_UTR 30.0%
TATAGAAATATGGCTGAAGA+AGG + chr5_3:64240854-64240873 Msa0824750:three_prime_UTR 30.0%
ACTATAGAAATATGGCTGAA+AGG + chr5_3:64240852-64240871 Msa0824750:three_prime_UTR 30.0%
TGGTTTATATGCCTCAAATA+TGG + chr5_3:64241120-64241139 Msa0824750:intron 30.0%
! ACTCTAAAAAGCCATATTTG+AGG - chr5_3:64241134-64241153 None:intergenic 30.0%
! CTTTGTTTGCATGGTGAAAA+AGG + chr5_3:64235356-64235375 Msa0824750:intron 35.0%
TGAACGGTTGATTATTGTTG+AGG + chr5_3:64235455-64235474 Msa0824750:intron 35.0%
GAACGGTTGATTATTGTTGA+GGG + chr5_3:64235456-64235475 Msa0824750:intron 35.0%
TTTCTCTGTCATCACTCAAA+AGG - chr5_3:64235736-64235755 None:intergenic 35.0%
TTTCTGTGTCTTTAGGTGAT+TGG + chr5_3:64235821-64235840 Msa0824750:intron 35.0%
TTCTGTGTCTTTAGGTGATT+GGG + chr5_3:64235822-64235841 Msa0824750:intron 35.0%
TGTTAGCAAGATAAGAGCTA+TGG + chr5_3:64236010-64236029 Msa0824750:exon 35.0%
AATGGCTTAAACCTTGTTGA+GGG - chr5_3:64236268-64236287 None:intergenic 35.0%
AAATGGCTTAAACCTTGTTG+AGG - chr5_3:64236269-64236288 None:intergenic 35.0%
!! ACAAGGTTTAAGCCATTTTC+CGG + chr5_3:64236271-64236290 Msa0824750:CDS 35.0%
! TTCAAGTTCCATCTTCCTAT+TGG + chr5_3:64236321-64236340 Msa0824750:CDS 35.0%
TCAAGTTCCATCTTCCTATT+GGG + chr5_3:64236322-64236341 Msa0824750:CDS 35.0%
AAATTCAGGATTTGCATTGC+TGG - chr5_3:64236360-64236379 None:intergenic 35.0%
CATTTGGATCATGTGAATAC+CGG + chr5_3:64236449-64236468 Msa0824750:CDS 35.0%
TTGGTGGAAAAGCTACAAAA+AGG + chr5_3:64236531-64236550 Msa0824750:CDS 35.0%
!!! TTTTTTCTTTGCAGCGCATT+TGG + chr5_3:64237286-64237305 Msa0824750:intron 35.0%
! TTTTTCTTTGCAGCGCATTT+GGG + chr5_3:64237287-64237306 Msa0824750:intron 35.0%
TTGGGTATGTTGAAGATGTT+AGG + chr5_3:64237305-64237324 Msa0824750:CDS 35.0%
! TGTGAGAATGATTTTGGACA+AGG + chr5_3:64237384-64237403 Msa0824750:CDS 35.0%
! GTGAGAATGATTTTGGACAA+GGG + chr5_3:64237385-64237404 Msa0824750:CDS 35.0%
AGAAGACAAAGGTTGTTGAA+AGG + chr5_3:64237458-64237477 Msa0824750:CDS 35.0%
TTCAAAAAATGGAGTGCAAG+AGG - chr5_3:64237716-64237735 None:intergenic 35.0%
AGACAGTTCCTTCTATAACT+TGG - chr5_3:64238357-64238376 None:intergenic 35.0%
AACTGGGAAGTTAGAATAAG+AGG + chr5_3:64238427-64238446 Msa0824750:intron 35.0%
ATAGGAGAAATAGGTGAGTT+AGG + chr5_3:64238485-64238504 Msa0824750:intron 35.0%
GCAAAAAACAGAGCAAACAT+AGG - chr5_3:64238700-64238719 None:intergenic 35.0%
AGAGTTGAGAGAAAAAACAG+AGG - chr5_3:64238760-64238779 None:intergenic 35.0%
! CTATAGTAATGGAGCAAATG+GGG + chr5_3:64238918-64238937 Msa0824750:intron 35.0%
AGAGGATCTTAACTCGAAAT+AGG + chr5_3:64239055-64239074 Msa0824750:intron 35.0%
GAGGATCTTAACTCGAAATA+GGG + chr5_3:64239056-64239075 Msa0824750:intron 35.0%
ATAACTGTATCCAGTACTCA+TGG - chr5_3:64239170-64239189 None:intergenic 35.0%
!! TGAGTACTGGATACAGTTAT+TGG + chr5_3:64239170-64239189 Msa0824750:intron 35.0%
TCGATATTTGCAAAGTGATG+TGG - chr5_3:64239524-64239543 None:intergenic 35.0%
CCGGAAGAAGAAAAACAATT+AGG - chr5_3:64239587-64239606 None:intergenic 35.0%
TATGCAGTTCCAAGAAGTTA+TGG + chr5_3:64239742-64239761 Msa0824750:intron 35.0%
ATGCAGTTCCAAGAAGTTAT+GGG + chr5_3:64239743-64239762 Msa0824750:intron 35.0%
ACTGTCTACTTAGAGATCTA+TGG - chr5_3:64239771-64239790 None:intergenic 35.0%
ATCTCTAAGTAGACAGTTGA+TGG + chr5_3:64239774-64239793 Msa0824750:CDS 35.0%
AAATGAGGTGAAATGGGAAA+AGG - chr5_3:64239865-64239884 None:intergenic 35.0%
! TTTCCCATTTCACCTCATTT+TGG + chr5_3:64239865-64239884 Msa0824750:CDS 35.0%
! TTCCCATTTCACCTCATTTT+GGG + chr5_3:64239866-64239885 Msa0824750:CDS 35.0%
AACCCAAAATGAGGTGAAAT+GGG - chr5_3:64239871-64239890 None:intergenic 35.0%
AAACCCAAAATGAGGTGAAA+TGG - chr5_3:64239872-64239891 None:intergenic 35.0%
TGCAGATCATTTCAATTTCC+AGG + chr5_3:64240012-64240031 Msa0824750:intron 35.0%
! TTGCCTTTTGATAGGAAGAA+CGG - chr5_3:64240192-64240211 None:intergenic 35.0%
!!! GAAATTTTAGTTGCAGATGG+CGG - chr5_3:64240394-64240413 None:intergenic 35.0%
! GTAATTTTATGCAGCAACGA+AGG + chr5_3:64240542-64240561 Msa0824750:intron 35.0%
!! AAGAAAGAGTTTGTTGCCTT+TGG - chr5_3:64240678-64240697 None:intergenic 35.0%
CACAATTTACTCAACTAGCT+TGG + chr5_3:64240728-64240747 Msa0824750:three_prime_UTR 35.0%
! ACGAATTTCCTTTTTGCAAC+TGG + chr5_3:64240805-64240824 Msa0824750:three_prime_UTR 35.0%
AGAAATATGGCTGAAAGGTT+TGG + chr5_3:64240900-64240919 Msa0824750:three_prime_UTR 35.0%
!! TTTGGTTTCTAGAACATCCT+TGG + chr5_3:64240918-64240937 Msa0824750:three_prime_UTR 35.0%
!! TTGGTTTCTAGAACATCCTT+GGG + chr5_3:64240919-64240938 Msa0824750:three_prime_UTR 35.0%
CAACAACAAAAAAACTCCCA+AGG - chr5_3:64240938-64240957 None:intergenic 35.0%
AACCTTTCAGAATGTGGTTA+TGG + chr5_3:64241000-64241019 Msa0824750:three_prime_UTR 35.0%
ATCCATAACCACATTCTGAA+AGG - chr5_3:64241005-64241024 None:intergenic 35.0%
TAGAAAGAAAGCTGCTCATA+GGG - chr5_3:64241045-64241064 None:intergenic 35.0%
GAGAGAAACAGAAAAAGGGT+TGG + chr5_3:64235022-64235041 Msa0824750:five_prime_UTR 40.0%
CAGAACAATGCTTGAAGAAC+AGG - chr5_3:64235069-64235088 None:intergenic 40.0%
TCTGTGTCTTTAGGTGATTG+GGG + chr5_3:64235823-64235842 Msa0824750:intron 40.0%
AGACAATGGCGAACAAGAAA+TGG + chr5_3:64236124-64236143 Msa0824750:CDS 40.0%
GATGGAACTTGAAAGTTCAG+CGG - chr5_3:64236314-64236333 None:intergenic 40.0%
TTTGCATTGCTGGTAGATTG+TGG - chr5_3:64236350-64236369 None:intergenic 40.0%
ACAAACGCAATTGCTGAGTT+TGG + chr5_3:64236421-64236440 Msa0824750:CDS 40.0%
GCTGAGTTTGGAGAATCATT+TGG + chr5_3:64236433-64236452 Msa0824750:CDS 40.0%
!! GATGTTTCTGCTGTCAGTTT+TGG + chr5_3:64236512-64236531 Msa0824750:CDS 40.0%
AGTAAAGGTTACTGTAGGCA+TGG + chr5_3:64236605-64236624 Msa0824750:CDS 40.0%
ATATGAGAGAAACTGTCGTG+AGG - chr5_3:64236662-64236681 None:intergenic 40.0%
GACAGTTTCTCTCATATGCA+TGG + chr5_3:64236665-64236684 Msa0824750:CDS 40.0%
!!! GAGCTTTTAAAGCAGAGAAG+AGG + chr5_3:64236764-64236783 Msa0824750:CDS 40.0%
!! AAAAAGGTACTGCAAGCACA+TGG + chr5_3:64236836-64236855 Msa0824750:CDS 40.0%
! AACATTCTTTTCTGCTGGCA+TGG - chr5_3:64237334-64237353 None:intergenic 40.0%
TGCCAGCAGAAAAGAATGTT+TGG + chr5_3:64237334-64237353 Msa0824750:CDS 40.0%
GCCAGCAGAAAAGAATGTTT+GGG + chr5_3:64237335-64237354 Msa0824750:CDS 40.0%
! ACCCAAACATTCTTTTCTGC+TGG - chr5_3:64237339-64237358 None:intergenic 40.0%
GGAAATCCTCATTATGTTCG+TGG + chr5_3:64237406-64237425 Msa0824750:CDS 40.0%
TGTGCTTGTGAAACCTTACA+GGG + chr5_3:64237435-64237454 Msa0824750:CDS 40.0%
!! ATTCCTCGGTGTTTATTCTC+TGG + chr5_3:64237678-64237697 Msa0824750:intron 40.0%
TATCTATATATGGCACGCGT+TGG + chr5_3:64237757-64237776 Msa0824750:intron 40.0%
ACAGTGGCAACTTCAAGAAT+GGG - chr5_3:64237916-64237935 None:intergenic 40.0%
AACAGTGGCAACTTCAAGAA+TGG - chr5_3:64237917-64237936 None:intergenic 40.0%
! CACTGTTTCTCGTGATGAAT+CGG + chr5_3:64237930-64237949 Msa0824750:intron 40.0%
GGTACGAGATACATGTTCTA+TGG - chr5_3:64238186-64238205 None:intergenic 40.0%
AGCAAAAACGAACCTGAGTA+AGG - chr5_3:64238670-64238689 None:intergenic 40.0%
! AACACGATAGTAGGATTGGT+AGG - chr5_3:64238791-64238810 None:intergenic 40.0%
ACGTAACACGATAGTAGGAT+TGG - chr5_3:64238795-64238814 None:intergenic 40.0%
ATTGGGATCCTAAGTAGGAT+CGG - chr5_3:64238840-64238859 None:intergenic 40.0%
ACTTCGGTATGTATTTCAGG+AGG + chr5_3:64239465-64239484 Msa0824750:intron 40.0%
AATCACAGAGGAAACCAGTA+AGG - chr5_3:64239671-64239690 None:intergenic 40.0%
!! TTACTGGTTTCCTCTGTGAT+TGG + chr5_3:64239670-64239689 Msa0824750:intron 40.0%
ATTGAGAAAGCCAATCACAG+AGG - chr5_3:64239683-64239702 None:intergenic 40.0%
CTATGGTTCCCATAACTTCT+TGG - chr5_3:64239754-64239773 None:intergenic 40.0%
!!! ACCTCATTTTGGGTTTCCTA+TGG + chr5_3:64239876-64239895 Msa0824750:CDS 40.0%
TCCATAGGAAACCCAAAATG+AGG - chr5_3:64239880-64239899 None:intergenic 40.0%
TCATTTCAATTTCCAGGCTG+CGG + chr5_3:64240018-64240037 Msa0824750:CDS 40.0%
GGAATCAGTGTCAGTATTCT+TGG - chr5_3:64240074-64240093 None:intergenic 40.0%
!! AATACTGACACTGATTCCTC+TGG + chr5_3:64240076-64240095 Msa0824750:CDS 40.0%
! CAATTTTCCTTTGGTGAGCT+AGG + chr5_3:64240157-64240176 Msa0824750:intron 40.0%
! GGCTGTATAGTGCTGTTAAA+TGG + chr5_3:64240270-64240289 Msa0824750:intron 40.0%
TAGCAATCGTACTGCATGTA+AGG - chr5_3:64240441-64240460 None:intergenic 40.0%
!! TGGAAATGCAAATGGACTGT+CGG - chr5_3:64240579-64240598 None:intergenic 40.0%
CAGTCCATTTGCATTTCCAA+TGG + chr5_3:64240580-64240599 Msa0824750:CDS 40.0%
GAAGTACAGAGTTAGAACAG+TGG + chr5_3:64240649-64240668 Msa0824750:three_prime_UTR 40.0%
! TTCCTTTTTGCAACTGGAAC+TGG + chr5_3:64240811-64240830 Msa0824750:three_prime_UTR 40.0%
TTGGACAACCTTTCAGAATG+TGG + chr5_3:64240994-64241013 Msa0824750:three_prime_UTR 40.0%
CTAGAAAGAAAGCTGCTCAT+AGG - chr5_3:64241046-64241065 None:intergenic 40.0%
! ACTCACTCAGTGCGTTTTGT+TGG + chr5_3:64234992-64235011 Msa0824750:five_prime_UTR 45.0%
CTGTGTCTTTAGGTGATTGG+GGG + chr5_3:64235824-64235843 Msa0824750:intron 45.0%
! GGGGAATAGCTTGTCTTCTT+TGG + chr5_3:64235843-64235862 Msa0824750:intron 45.0%
ATGGCGAACAAGAAATGGCT+AGG + chr5_3:64236129-64236148 Msa0824750:CDS 45.0%
CGAACAAGAAATGGCTAGGT+TGG + chr5_3:64236133-64236152 Msa0824750:CDS 45.0%
TCTTGTCCTGACCACATCAT+CGG + chr5_3:64236158-64236177 Msa0824750:CDS 45.0%
CATCGGTGAAGTCGTCTTTA+AGG + chr5_3:64236175-64236194 Msa0824750:CDS 45.0%
!! TTGACATTAGGTGGCGGAAT+TGG - chr5_3:64236245-64236264 None:intergenic 45.0%
TGTTGAGGGTTGACATTAGG+TGG - chr5_3:64236254-64236273 None:intergenic 45.0%
CCTTGTTGAGGGTTGACATT+AGG - chr5_3:64236257-64236276 None:intergenic 45.0%
CCTAATGTCAACCCTCAACA+AGG + chr5_3:64236254-64236273 Msa0824750:CDS 45.0%
ACGGAGATAATGCCGGAAAA+TGG - chr5_3:64236286-64236305 None:intergenic 45.0%
TGAAAGTTCAGCGGTGAAGA+CGG - chr5_3:64236305-64236324 None:intergenic 45.0%
TGTGGATCCCAATAGGAAGA+TGG - chr5_3:64236332-64236351 None:intergenic 45.0%
GGTAGATTGTGGATCCCAAT+AGG - chr5_3:64236339-64236358 None:intergenic 45.0%
!! GTTTCTGCTGTCAGTTTTGG+TGG + chr5_3:64236515-64236534 Msa0824750:CDS 45.0%
AAAGGTTACTGTAGGCATGG+AGG + chr5_3:64236608-64236627 Msa0824750:CDS 45.0%
! AGGATCCGATGTTTTCACCA+GGG + chr5_3:64236711-64236730 Msa0824750:CDS 45.0%
AGTGACCCTGGTGAAAACAT+CGG - chr5_3:64236719-64236738 None:intergenic 45.0%
TCGCGCGACTCAATAGTATT+CGG + chr5_3:64236915-64236934 Msa0824750:CDS 45.0%
! TGGTTGATTTACAGGCCTCA+CGG + chr5_3:64237025-64237044 Msa0824750:intron 45.0%
TGACAGCACTTTCACTGAAG+AGG + chr5_3:64237153-64237172 Msa0824750:CDS 45.0%
GTGTGCTTGTGAAACCTTAC+AGG + chr5_3:64237434-64237453 Msa0824750:CDS 45.0%
ACCTTACAGGGAGAAGACAA+AGG + chr5_3:64237447-64237466 Msa0824750:CDS 45.0%
ACCTTTGTCTTCTCCCTGTA+AGG - chr5_3:64237451-64237470 None:intergenic 45.0%
GAACCAGAGAATAAACACCG+AGG - chr5_3:64237684-64237703 None:intergenic 45.0%
CGATTCATCACGAGAAACAG+TGG - chr5_3:64237932-64237951 None:intergenic 45.0%
TATGGACAATGGAACAGGTG+CGG - chr5_3:64238208-64238227 None:intergenic 45.0%
AATGGAGAAAGGAAACGGAG+AGG - chr5_3:64238513-64238532 None:intergenic 45.0%
! TGATTTGGGCCATTGTAGTC+AGG + chr5_3:64238581-64238600 Msa0824750:intron 45.0%
GCCATTGTAGTCAGGATTGA+GGG + chr5_3:64238589-64238608 Msa0824750:intron 45.0%
TCGTAAGATCCTACATCCCA+TGG + chr5_3:64238625-64238644 Msa0824750:intron 45.0%
GAGGAACGTAACACGATAGT+AGG - chr5_3:64238800-64238819 None:intergenic 45.0%
! GTTTGAAGGGTATGGCATCT+TGG + chr5_3:64239231-64239250 Msa0824750:intron 45.0%
!! CAGGAGGTACCATGATAGAA+TGG + chr5_3:64239481-64239500 Msa0824750:intron 45.0%
! CAGAGTGCTCCATTCTATCA+TGG - chr5_3:64239493-64239512 None:intergenic 45.0%
TGAAATGGGAAAAGGTCGTC+GGG - chr5_3:64239857-64239876 None:intergenic 45.0%
GTGAAATGGGAAAAGGTCGT+CGG - chr5_3:64239858-64239877 None:intergenic 45.0%
TGTATACCTATTCCCTCCAG+AGG - chr5_3:64240095-64240114 None:intergenic 45.0%
CTATAAGCCTAGCTCACCAA+AGG - chr5_3:64240167-64240186 None:intergenic 45.0%
GCACCGTTCTTCCTATCAAA+AGG + chr5_3:64240186-64240205 Msa0824750:intron 45.0%
!! GCAGATGGCGGAAAAAAAAG+TGG - chr5_3:64240382-64240401 None:intergenic 45.0%
!! GAAATGCAAATGGACTGTCG+GGG - chr5_3:64240577-64240596 None:intergenic 45.0%
!! GGAAATGCAAATGGACTGTC+GGG - chr5_3:64240578-64240597 None:intergenic 45.0%
GTACAGAGTTAGAACAGTGG+AGG + chr5_3:64240652-64240671 Msa0824750:three_prime_UTR 45.0%
CACCAGTTCCAGTTGCAAAA+AGG - chr5_3:64240816-64240835 None:intergenic 45.0%
! CTTTTTGCAACTGGAACTGG+TGG + chr5_3:64240814-64240833 Msa0824750:three_prime_UTR 45.0%
ACTTCACCGATGATGTGGTC+AGG - chr5_3:64236167-64236186 None:intergenic 50.0%
AGACGACTTCACCGATGATG+TGG - chr5_3:64236172-64236191 None:intergenic 50.0%
TGAGGGTTGACATTAGGTGG+CGG - chr5_3:64236251-64236270 None:intergenic 50.0%
GGTGAAGACGGAGATAATGC+CGG - chr5_3:64236293-64236312 None:intergenic 50.0%
CATGTGAATACCGGAACTCG+AGG + chr5_3:64236458-64236477 Msa0824750:CDS 50.0%
AACAGCAAGACCTCGAGTTC+CGG - chr5_3:64236471-64236490 None:intergenic 50.0%
! GAGGATCCGATGTTTTCACC+AGG + chr5_3:64236710-64236729 Msa0824750:CDS 50.0%
TCTATCTGAGCTAGTGACCC+TGG - chr5_3:64236731-64236750 None:intergenic 50.0%
GGCAGCGAAGCAATTGACAT+TGG - chr5_3:64236794-64236813 None:intergenic 50.0%
TTAACTGAGAGCCAGCGACA+TGG + chr5_3:64236863-64236882 Msa0824750:CDS 50.0%
!! TCAGTGAAAGTGCTGTCAGC+TGG - chr5_3:64237151-64237170 None:intergenic 50.0%
CGAGAGCCACGAACATAATG+AGG - chr5_3:64237415-64237434 None:intergenic 50.0%
ATGGACAATGGAACAGGTGC+GGG - chr5_3:64238207-64238226 None:intergenic 50.0%
GGCCATTGTAGTCAGGATTG+AGG + chr5_3:64238588-64238607 Msa0824750:intron 50.0%
GCCCTCAATCCTGACTACAA+TGG - chr5_3:64238593-64238612 None:intergenic 50.0%
TTGTAGTCAGGATTGAGGGC+TGG + chr5_3:64238593-64238612 Msa0824750:intron 50.0%
!! AGGATTGAGGGCTGGTTTGT+AGG + chr5_3:64238601-64238620 Msa0824750:intron 50.0%
ACCTGAGTAAGGTCGAAGCA+CGG - chr5_3:64238659-64238678 None:intergenic 50.0%
ACACACACACACACACACAC+TGG + chr5_3:64239385-64239404 Msa0824750:intron 50.0%
GGAACTCTCAACGCATCCAT+AGG - chr5_3:64239895-64239914 None:intergenic 50.0%
GATGCGTTGAGAGTTCCAGA+TGG + chr5_3:64239898-64239917 Msa0824750:CDS 50.0%
!! ACTGACACTGATTCCTCTGG+AGG + chr5_3:64240079-64240098 Msa0824750:CDS 50.0%
!! CTGACACTGATTCCTCTGGA+GGG + chr5_3:64240080-64240099 Msa0824750:CDS 50.0%
! CTGATTCCTCTGGAGGGAAT+AGG + chr5_3:64240086-64240105 Msa0824750:CDS 50.0%
GTTAGAACAGTGGAGGCCAA+AGG + chr5_3:64240659-64240678 Msa0824750:three_prime_UTR 50.0%
!! AGGTGGCGGAATTGGCATCA+TGG - chr5_3:64236237-64236256 None:intergenic 55.0%
GTCAATTGCTTCGCTGCCGA+TGG + chr5_3:64236796-64236815 Msa0824750:CDS 55.0%
AGCCAGCGACATGGTAAGTC+TGG + chr5_3:64236872-64236891 Msa0824750:CDS 55.0%
AGCCAGACTTACCATGTCGC+TGG - chr5_3:64236877-64236896 None:intergenic 55.0%
ACCACTGCATGTTGTCCGTG+AGG - chr5_3:64237043-64237062 None:intergenic 55.0%
CGGACAACATGCAGTGGTTC+TGG + chr5_3:64237045-64237064 Msa0824750:CDS 55.0%
! GTTGAGGTGCCATGGGATGT+AGG - chr5_3:64238637-64238656 None:intergenic 55.0%
! AAGCACGGTTGAGGTGCCAT+GGG - chr5_3:64238644-64238663 None:intergenic 55.0%
GTAAGGTCGAAGCACGGTTG+AGG - chr5_3:64238653-64238672 None:intergenic 55.0%
ACCGTGCTTCGACCTTACTC+AGG + chr5_3:64238655-64238674 Msa0824750:intron 55.0%
GGTCAGCTCGTGAAAACACG+AGG - chr5_3:64238819-64238838 None:intergenic 55.0%
CGAGCTGACCGATCCTACTT+AGG + chr5_3:64238829-64238848 Msa0824750:intron 55.0%
GATTTAGAGGTTCCGCAGCC+TGG - chr5_3:64240033-64240052 None:intergenic 55.0%
GCCTCACGGACAACATGCAG+TGG + chr5_3:64237039-64237058 Msa0824750:CDS 60.0%
! GAAGCACGGTTGAGGTGCCA+TGG - chr5_3:64238645-64238664 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 64234862 64241180 64234862 ID=Msa0824750;Name=Msa0824750
chr5_3 mRNA 64234862 64241180 64234862 ID=Msa0824750-mRNA-1;Parent=Msa0824750;Name=Msa0824750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=272|1|1|1|0.75|0.66|9|534|551
chr5_3 exon 64234862 64235114 64234862 ID=Msa0824750-mRNA-1:exon:20023;Parent=Msa0824750-mRNA-1
chr5_3 exon 64236010 64236948 64236010 ID=Msa0824750-mRNA-1:exon:20024;Parent=Msa0824750-mRNA-1
chr5_3 exon 64237039 64237194 64237039 ID=Msa0824750-mRNA-1:exon:20025;Parent=Msa0824750-mRNA-1
chr5_3 exon 64237300 64237479 64237300 ID=Msa0824750-mRNA-1:exon:20026;Parent=Msa0824750-mRNA-1
chr5_3 exon 64239484 64239560 64239484 ID=Msa0824750-mRNA-1:exon:20027;Parent=Msa0824750-mRNA-1
chr5_3 exon 64239749 64239919 64239749 ID=Msa0824750-mRNA-1:exon:20028;Parent=Msa0824750-mRNA-1
chr5_3 exon 64240017 64240107 64240017 ID=Msa0824750-mRNA-1:exon:20029;Parent=Msa0824750-mRNA-1
chr5_3 exon 64240556 64241122 64240556 ID=Msa0824750-mRNA-1:exon:20030;Parent=Msa0824750-mRNA-1
chr5_3 exon 64241153 64241180 64241153 ID=Msa0824750-mRNA-1:exon:20031;Parent=Msa0824750-mRNA-1
chr5_3 five_prime_UTR 64234862 64235114 64234862 ID=Msa0824750-mRNA-1:five_prime_utr;Parent=Msa0824750-mRNA-1
chr5_3 five_prime_UTR 64236010 64236028 64236010 ID=Msa0824750-mRNA-1:five_prime_utr;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64236029 64236948 64236029 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64237039 64237194 64237039 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64237300 64237479 64237300 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64239484 64239560 64239484 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64239749 64239919 64239749 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64240017 64240107 64240017 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 CDS 64240556 64240616 64240556 ID=Msa0824750-mRNA-1:cds;Parent=Msa0824750-mRNA-1
chr5_3 three_prime_UTR 64240617 64241122 64240617 ID=Msa0824750-mRNA-1:three_prime_utr;Parent=Msa0824750-mRNA-1
chr5_3 three_prime_UTR 64241153 64241180 64241153 ID=Msa0824750-mRNA-1:three_prime_utr;Parent=Msa0824750-mRNA-1
Gene Sequence

>Msa0824750

ATGGATATATCAGAGTACACAAGAATTGTGTTTGATAAAATTCAGAAATTTGAGCCTGAAAATGCTAGAAAGATTATTGGCTATCTTCTTTTACAAGACAATGGCGAACAAGAAATGGCTAGGTTGGCTTCTTGTCCTGACCACATCATCGGTGAAGTCGTCTTTAAGGCCAAAACTGATCTTCAAATAATGGCTGTTAATTCAACCATGATGCCAATTCCGCCACCTAATGTCAACCCTCAACAAGGTTTAAGCCATTTTCCGGCATTATCTCCGTCTTCACCGCTGAACTTTCAAGTTCCATCTTCCTATTGGGATCCACAATCTACCAGCAATGCAAATCCTGAATTTACGGGAATGAATTACATGGATTCTATTGTAGAACTTCAAAAACAAACGCAATTGCTGAGTTTGGAGAATCATTTGGATCATGTGAATACCGGAACTCGAGGTCTTGCTGTTAATGATTACAACAATGGCTTAGATGTTTCTGCTGTCAGTTTTGGTGGAAAAGCTACAAAAAGGTTTTCAAATTCAAACATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGGCATGGAGGTAACTGTAGATATTTTCATGGTCAAGTTCCTCACGACAGTTTCTCTCATATGCATGGAAATAATGATAATACTAGCAATGAGGATCCGATGTTTTCACCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATCGAGCTTTTAAAGCAGAGAAGAGGAAATCCAATGTCAATTGCTTCGCTGCCGATGGCATACTATGATAAATATAAAAAGGTACTGCAAGCACATGGTTATTTAACTGAGAGCCAGCGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTCGCGCGACTCAATAGTATTCGGCTAATTGATAGGCCTCACGGACAACATGCAGTGGTTCTGGCTGAAGATGCTCCAAAATACATTCAAAAGGGAGATTCTGTTCAAAATATCAGTGCATCGCGACAGATATATTTGACTTTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCGCAGAATACTTCAACGCATTTGGGTATGTTGAAGATGTTAGGATTCCATGCCAGCAGAAAAGAATGTTTGGGTTTGTAACATTTGCTGATCCTGAAACTGTGAGAATGATTTTGGACAAGGGAAATCCTCATTATGTTCGTGGCTCTCGTGTGCTTGTGAAACCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCATGATAGAATGGAGCACTCTGCTTGCTGTCCACATCACTTTGCAAATATCGACTCTGAACTTGACTCAATTCCAAGAAGTTATGGGAACCATAGATCTCTAAGTAGACAGTTGATGGAAGAGCATGAACAAGCTTTTGAATTGCAAAGGAGACGTCTTGCGCAGCTGCAATTTACCCGACGACCTTTTCCCATTTCACCTCATTTTGGGTTTCCTATGGATGCGTTGAGAGTTCCAGATGATCATTTCAATTTCCAGGCTGCGGAACCTCTAAATCATGCGTTGAATAACAACACCAAGAATACTGACACTGATTCCTCTGGAGGGAATAGCAACGAAGGACTCAATCTCCCCGACAGTCCATTTGCATTTCCAATGGAAAATGATAAATAG
Protein sequence

>Msa0824750

MDISEYTRIVFDKIQKFEPENARKIIGYLLLQDNGEQEMARLASCPDHIIGEVVFKAKTDLQIMAVNSTMMPIPPPNVNPQQGLSHFPALSPSSPLNFQVPSSYWDPQSTSNANPEFTGMNYMDSIVELQKQTQLLSLENHLDHVNTGTRGLAVNDYNNGLDVSAVSFGGKATKRFSNSNMSEFPLKICHYFSKGYCRHGGNCRYFHGQVPHDSFSHMHGNNDNTSNEDPMFSPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAHGYLTESQRHGKSGYSLTKLLARLNSIRLIDRPHGQHAVVLAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYHDRMEHSACCPHHFANIDSELDSIPRSYGNHRSLSRQLMEEHEQAFELQRRRLAQLQFTRRPFPISPHFGFPMDALRVPDDHFNFQAAEPLNHALNNNTKNTDTDSSGGNSNEGLNLPDSPFAFPMENDK*