Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358060 | KEH23814.1 | 85.528 | 615 | 38 | 7 | 1 | 602 | 1 | 577 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358060 | sp|Q8W4K5|VAB_ARATH | 63.786 | 486 | 143 | 13 | 3 | 468 | 10 | 482 | 6.31e-157 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358060 | A0A072U287 | 85.528 | 615 | 38 | 7 | 1 | 602 | 1 | 577 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018920 | Msa0358060 | 0.839711 | 1.345768e-57 | -8.615850e-47 |
| Msa0020540 | Msa0358060 | 0.833988 | 3.886524e-56 | -8.615850e-47 |
| Msa0112670 | Msa0358060 | 0.824913 | 6.238654e-54 | -8.615850e-47 |
| Msa0156050 | Msa0358060 | 0.809363 | 1.963245e-50 | -8.615850e-47 |
| Msa0156090 | Msa0358060 | 0.817039 | 4.055637e-52 | -8.615850e-47 |
| Msa0159590 | Msa0358060 | 0.822762 | 1.991521e-53 | -8.615850e-47 |
| Msa0159620 | Msa0358060 | 0.806741 | 7.099099e-50 | -8.615850e-47 |
| Msa0170070 | Msa0358060 | 0.801595 | 8.360854e-49 | -8.615850e-47 |
| Msa0281540 | Msa0358060 | 0.805221 | 1.482510e-49 | -8.615850e-47 |
| Msa0344110 | Msa0358060 | 0.800326 | 1.519127e-48 | -8.615850e-47 |
| Msa0358060 | Msa0373170 | 0.841047 | 6.020951e-58 | -8.615850e-47 |
| Msa0358060 | Msa0382230 | 0.805347 | 1.394811e-49 | -8.615850e-47 |
| Msa0358060 | Msa0412130 | 0.813622 | 2.332327e-51 | -8.615850e-47 |
| Msa0358060 | Msa0421150 | 0.812424 | 4.269078e-51 | -8.615850e-47 |
| Msa0358060 | Msa0421750 | 0.845763 | 3.315467e-59 | -8.615850e-47 |
| Msa0358060 | Msa0433760 | 0.816249 | 6.093886e-52 | -8.615850e-47 |
| Msa0358060 | Msa0467690 | 0.843129 | 1.694307e-58 | -8.615850e-47 |
| Msa0358060 | Msa0477630 | 0.814729 | 1.328342e-51 | -8.615850e-47 |
| Msa0358060 | Msa0506540 | 0.800251 | 1.573546e-48 | -8.615850e-47 |
| Msa0358060 | Msa0513620 | 0.811066 | 8.428837e-51 | -8.615850e-47 |
| Msa0358060 | Msa0514020 | 0.839248 | 1.774913e-57 | -8.615850e-47 |
| Msa0358060 | Msa0520680 | 0.801364 | 9.325414e-49 | -8.615850e-47 |
| Msa0358060 | Msa0521680 | 0.812137 | 4.931883e-51 | -8.615850e-47 |
| Msa0358060 | Msa0527850 | 0.802379 | 5.770421e-49 | -8.615850e-47 |
| Msa0358060 | Msa0548000 | 0.821742 | 3.434546e-53 | -8.615850e-47 |
| Msa0358060 | Msa0554300 | 0.802316 | 5.943351e-49 | -8.615850e-47 |
| Msa0358060 | Msa0561560 | 0.825847 | 3.748758e-54 | -8.615850e-47 |
| Msa0358060 | Msa0572830 | 0.844407 | 7.704963e-59 | -8.615850e-47 |
| Msa0358060 | Msa0577280 | 0.803242 | 3.828131e-49 | -8.615850e-47 |
| Msa0358060 | Msa0577330 | 0.807241 | 5.563550e-50 | -8.615850e-47 |
| Msa0358060 | Msa0586200 | 0.805583 | 1.244704e-49 | -8.615850e-47 |
| Msa0358060 | Msa0615630 | 0.835855 | 1.315593e-56 | -8.615850e-47 |
| Msa0358060 | Msa0620500 | 0.824321 | 8.600739e-54 | -8.615850e-47 |
| Msa0358060 | Msa0622920 | 0.803309 | 3.707520e-49 | -8.615850e-47 |
| Msa0358060 | Msa0648760 | 0.805006 | 1.643939e-49 | -8.615850e-47 |
| Msa0358060 | Msa0654740 | 0.816992 | 4.153885e-52 | -8.615850e-47 |
| Msa0358060 | Msa0690570 | 0.802422 | 5.651650e-49 | -8.615850e-47 |
| Msa0358060 | Msa0698730 | 0.813793 | 2.138480e-51 | -8.615850e-47 |
| Msa0358060 | Msa0707260 | 0.813938 | 1.986175e-51 | -8.615850e-47 |
| Msa0358060 | Msa0713920 | 0.814572 | 1.439326e-51 | -8.615850e-47 |
| Msa0358060 | Msa0717900 | 0.835793 | 1.364138e-56 | -8.615850e-47 |
| Msa0358060 | Msa0720280 | 0.816899 | 4.360071e-52 | -8.615850e-47 |
| Msa0358060 | Msa0803140 | 0.813110 | 3.021734e-51 | -8.615850e-47 |
| Msa0358060 | Msa0816080 | 0.807438 | 5.053545e-50 | -8.615850e-47 |
| Msa0358060 | Msa0837680 | 0.810116 | 1.352790e-50 | -8.615850e-47 |
| Msa0358060 | Msa0841500 | 0.808471 | 3.047211e-50 | -8.615850e-47 |
| Msa0358060 | Msa0861440 | 0.807047 | 6.117610e-50 | -8.615850e-47 |
| Msa0358060 | Msa1008670 | 0.829800 | 4.203280e-55 | -8.615850e-47 |
| Msa0358060 | Msa1008680 | 0.802068 | 6.684601e-49 | -8.615850e-47 |
| Msa0358060 | Msa1033920 | 0.803509 | 3.369414e-49 | -8.615850e-47 |
| Msa0358060 | Msa1036090 | 0.961862 | 3.388537e-120 | -8.615850e-47 |
| Msa0358060 | Msa1060900 | 0.825494 | 4.546901e-54 | -8.615850e-47 |
| Msa0358060 | Msa1076020 | 0.827220 | 1.764281e-54 | -8.615850e-47 |
| Msa0358060 | Msa1082380 | 0.816068 | 6.689722e-52 | -8.615850e-47 |
| Msa0358060 | Msa1122560 | 0.958167 | 4.597324e-116 | -8.615850e-47 |
| Msa0358060 | Msa1127280 | 0.824409 | 8.200556e-54 | -8.615850e-47 |
| Msa0358060 | Msa1159590 | 0.806221 | 9.140914e-50 | -8.615850e-47 |
| Msa0358060 | Msa1162880 | 0.812201 | 4.775642e-51 | -8.615850e-47 |
| Msa0358060 | Msa1163180 | 0.820113 | 8.142125e-53 | -8.615850e-47 |
| Msa0358060 | Msa1163350 | 0.971656 | 1.653607e-133 | -8.615850e-47 |
| Msa0358060 | Msa1165480 | 0.823408 | 1.407778e-53 | -8.615850e-47 |
| Msa0358060 | Msa1183740 | 0.803169 | 3.962700e-49 | -8.615850e-47 |
| Msa0358060 | Msa1190390 | 0.805844 | 1.096851e-49 | -8.615850e-47 |
| Msa0358060 | Msa1213830 | 0.803235 | 3.841156e-49 | -8.615850e-47 |
| Msa0358060 | Msa1214350 | 0.801130 | 1.040941e-48 | -8.615850e-47 |
| Msa0358060 | Msa1215980 | 0.825310 | 5.025769e-54 | -8.615850e-47 |
| Msa0358060 | Msa1219770 | 0.812575 | 3.956777e-51 | -8.615850e-47 |
| Msa0358060 | Msa1220030 | 0.813005 | 3.186211e-51 | -8.615850e-47 |
| Msa0358060 | Msa1254540 | 0.803514 | 3.361067e-49 | -8.615850e-47 |
| Msa0358060 | Msa1266690 | 0.824281 | 8.787173e-54 | -8.615850e-47 |
| Msa0358060 | Msa1268540 | 0.821381 | 4.160651e-53 | -8.615850e-47 |
| Msa0358060 | Msa1294790 | 0.805633 | 1.215000e-49 | -8.615850e-47 |
| Msa0358060 | Msa1300460 | 0.805936 | 1.049309e-49 | -8.615850e-47 |
| Msa0358060 | Msa1301820 | 0.815805 | 7.658434e-52 | -8.615850e-47 |
| Msa0358060 | Msa1305780 | 0.805625 | 1.219361e-49 | -8.615850e-47 |
| Msa0358060 | Msa1333360 | 0.815171 | 1.059953e-51 | -8.615850e-47 |
| Msa0358060 | Msa1339170 | 0.818495 | 1.902608e-52 | -8.615850e-47 |
| Msa0358060 | Msa1339230 | 0.821643 | 3.621194e-53 | -8.615850e-47 |
| Msa0358060 | Msa1361930 | 0.811387 | 7.180323e-51 | -8.615850e-47 |
| Msa0358060 | Msa1381470 | 0.810694 | 1.014815e-50 | -8.615850e-47 |
| Msa0358060 | Msa1393560 | 0.845107 | 4.992112e-59 | -8.615850e-47 |
| Msa0358060 | Msa1399190 | 0.803727 | 3.035843e-49 | -8.615850e-47 |
| Msa0358060 | Msa1426320 | 0.833770 | 4.405926e-56 | -8.615850e-47 |
| Msa0358060 | Msa1435100 | 0.810404 | 1.172239e-50 | -8.615850e-47 |
| Msa0358060 | Msa1439730 | 0.805742 | 1.152804e-49 | -8.615850e-47 |
| Msa0358060 | Msa1447170 | 0.803941 | 2.740898e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358060 | MtrunA17_Chr7g0260211 | 96.383 | 470 | 10 | 2 | 1 | 468 | 1 | 465 | 0.0 | 917 |
| Msa0358060 | MtrunA17_Chr1g0185201 | 75.783 | 479 | 101 | 10 | 1 | 468 | 1 | 475 | 0.0 | 585 |
| Msa0358060 | MtrunA17_Chr1g0166381 | 62.554 | 462 | 149 | 9 | 18 | 468 | 11 | 459 | 3.34e-137 | 408 |
| Msa0358060 | MtrunA17_Chr1g0204831 | 58.495 | 465 | 161 | 10 | 8 | 468 | 10 | 446 | 3.92e-123 | 371 |
| Msa0358060 | MtrunA17_Chr3g0140081 | 46.233 | 292 | 129 | 5 | 177 | 467 | 103 | 367 | 1.92e-59 | 202 |
| Msa0358060 | MtrunA17_Chr4g0019631 | 43.051 | 295 | 137 | 5 | 131 | 424 | 22 | 286 | 4.17e-48 | 170 |
| Msa0358060 | MtrunA17_Chr5g0399391 | 36.913 | 298 | 147 | 6 | 178 | 466 | 113 | 378 | 1.56e-43 | 160 |
| Msa0358060 | MtrunA17_Chr4g0073191 | 33.333 | 294 | 152 | 9 | 178 | 468 | 146 | 398 | 3.96e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358060 | AT3G63300.1 | 63.786 | 486 | 143 | 13 | 3 | 468 | 10 | 482 | 6.41e-158 | 462 |
| Msa0358060 | AT3G22810.1 | 59.382 | 453 | 172 | 7 | 20 | 468 | 18 | 462 | 9.39e-155 | 453 |
| Msa0358060 | AT4G14740.1 | 59.737 | 457 | 169 | 6 | 20 | 468 | 18 | 467 | 1.77e-154 | 452 |
| Msa0358060 | AT4G14740.2 | 59.737 | 457 | 169 | 6 | 20 | 468 | 18 | 467 | 1.77e-154 | 452 |
| Msa0358060 | AT5G43870.1 | 57.081 | 459 | 152 | 10 | 20 | 468 | 22 | 445 | 4.42e-134 | 399 |
| Msa0358060 | AT4G14740.4 | 58.690 | 397 | 149 | 6 | 20 | 408 | 18 | 407 | 2.69e-121 | 365 |
| Msa0358060 | AT3G22810.3 | 62.848 | 323 | 119 | 1 | 146 | 468 | 3 | 324 | 2.29e-120 | 360 |
| Msa0358060 | AT3G22810.2 | 58.929 | 392 | 149 | 7 | 20 | 407 | 18 | 401 | 3.63e-120 | 362 |
| Msa0358060 | AT4G14740.3 | 63.914 | 327 | 113 | 2 | 146 | 468 | 3 | 328 | 8.07e-120 | 358 |
| Msa0358060 | AT3G63300.2 | 63.636 | 330 | 108 | 5 | 145 | 468 | 1 | 324 | 1.80e-103 | 317 |
| Msa0358060 | AT5G43870.2 | 57.250 | 400 | 124 | 12 | 20 | 408 | 22 | 385 | 4.80e-101 | 312 |
| Msa0358060 | AT4G17350.1 | 37.458 | 299 | 147 | 7 | 178 | 466 | 115 | 383 | 1.05e-39 | 150 |
| Msa0358060 | AT4G16670.1 | 35.235 | 298 | 163 | 6 | 178 | 466 | 132 | 408 | 8.56e-39 | 148 |
| Msa0358060 | AT4G32780.1 | 41.196 | 301 | 142 | 7 | 177 | 472 | 131 | 401 | 7.92e-36 | 139 |
| Msa0358060 | AT4G32780.2 | 41.196 | 301 | 142 | 7 | 177 | 472 | 150 | 420 | 7.98e-36 | 140 |
| Msa0358060 | AT5G47440.1 | 34.130 | 293 | 162 | 5 | 189 | 478 | 134 | 398 | 1.14e-35 | 139 |
| Msa0358060 | AT4G16670.2 | 37.238 | 239 | 121 | 5 | 178 | 407 | 132 | 350 | 2.07e-28 | 117 |
| Msa0358060 | AT4G16670.3 | 33.209 | 268 | 121 | 6 | 178 | 407 | 132 | 379 | 8.19e-23 | 101 |
| Msa0358060 | AT5G57770.1 | 32.069 | 290 | 164 | 7 | 178 | 465 | 128 | 386 | 1.80e-20 | 94.7 |
| Msa0358060 | AT5G57770.2 | 35.714 | 224 | 118 | 3 | 178 | 401 | 128 | 325 | 7.45e-20 | 91.7 |
Find 135 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGGTGGCGGTTCTTTAAC+TGG | 0.219424 | 3_1:-42793924 | Msa0358060:CDS |
| TCTGGACTCAAGGGGTTTCT+AGG | 0.252811 | 3_1:-42792078 | Msa0358060:CDS |
| CTCTTCCACCATTGAATAAT+GGG | 0.255578 | 3_1:+42793727 | None:intergenic |
| GCTCTTCCACCATTGAATAA+TGG | 0.258525 | 3_1:+42793726 | None:intergenic |
| TGCCCTTAGCAAGTAGTTCT+TGG | 0.278237 | 3_1:+42792640 | None:intergenic |
| AATTCATCTGAATGAGAAAT+TGG | 0.282397 | 3_1:+42793891 | None:intergenic |
| GCGTTATTATCCGACGGTTT+TGG | 0.306770 | 3_1:+42791288 | None:intergenic |
| CTGCCACTCGGAACCGATTC+AGG | 0.307254 | 3_1:+42794368 | None:intergenic |
| CTAGAGCTGTGAAGGACTTA+TGG | 0.308647 | 3_1:-42792806 | Msa0358060:CDS |
| GGCAATGGCACGGCTTGTTC+AGG | 0.312483 | 3_1:-42793690 | Msa0358060:CDS |
| ATCAAAGAGAATATGATATC+TGG | 0.312576 | 3_1:-42792096 | Msa0358060:CDS |
| GAGTGGTTAGTGGTTTCTTC+AGG | 0.337132 | 3_1:+42794200 | None:intergenic |
| GATAATCTACCTGACGTTAA+TGG | 0.341993 | 3_1:+42793966 | None:intergenic |
| ATGGGAGGTATACCAATATC+TGG | 0.367567 | 3_1:-42792750 | Msa0358060:CDS |
| TTCGATGGACCTGGATCATA+TGG | 0.389234 | 3_1:+42791222 | None:intergenic |
| TTTGTGTGGTTGTCATGCTT+TGG | 0.394458 | 3_1:+42791516 | None:intergenic |
| TAATGATAATGTACCGTTAC+GGG | 0.396975 | 3_1:+42792599 | None:intergenic |
| TGGCGAAGCCACCTATGAAT+TGG | 0.403705 | 3_1:+42791328 | None:intergenic |
| TATTCCGTCTCTGCCATTGT+TGG | 0.412327 | 3_1:-42791555 | Msa0358060:CDS |
| ACAAAATCGTCAAGTGTAGA+AGG | 0.414935 | 3_1:+42791582 | None:intergenic |
| ATGAAGAGCAAACATGTTGC+AGG | 0.415682 | 3_1:-42792351 | Msa0358060:CDS |
| CACAATTTCTCCACTATCAC+TGG | 0.431487 | 3_1:+42792692 | None:intergenic |
| TCCATTCACCCATTATTCAA+TGG | 0.432610 | 3_1:-42793735 | Msa0358060:CDS |
| TTTGAACGAGGCTCGACCCT+TGG | 0.434784 | 3_1:+42791465 | None:intergenic |
| GACAGACGTGGCTGTTGCTT+CGG | 0.436071 | 3_1:-42793487 | Msa0358060:CDS |
| GCAACTAACATCCAATTCAT+AGG | 0.437213 | 3_1:-42791339 | Msa0358060:CDS |
| AACAACAGCTCCAGTGATAG+TGG | 0.442876 | 3_1:-42792702 | Msa0358060:CDS |
| CAATTGTCTGCGTCCTGAAT+CGG | 0.446737 | 3_1:-42794381 | Msa0358060:CDS |
| AGCAAGTAGTTCTTGGCTGC+AGG | 0.448375 | 3_1:+42792647 | None:intergenic |
| TCATCTGATAGATCTCTTCC+TGG | 0.453162 | 3_1:+42792187 | None:intergenic |
| TCTGTTTACATACATCGAAC+AGG | 0.458457 | 3_1:-42792470 | Msa0358060:CDS |
| TCTTCATGCATGCCTTCAAA+TGG | 0.464517 | 3_1:-42794230 | Msa0358060:CDS |
| TTCAGATAAAGAGTGGTTAG+TGG | 0.466917 | 3_1:+42794190 | None:intergenic |
| TCAGGACGCAGACAATTGAT+TGG | 0.473398 | 3_1:+42794386 | None:intergenic |
| GGCAGAGGGGTGCTGCCACT+CGG | 0.474082 | 3_1:+42794356 | None:intergenic |
| ACCATTGAATAATGGGTGAA+TGG | 0.477885 | 3_1:+42793734 | None:intergenic |
| CCTCCCATTCCTTTCTCCAA+TGG | 0.478119 | 3_1:+42792765 | None:intergenic |
| GGAGAGTCCTCGAGTTCCTA+TGG | 0.478365 | 3_1:-42794333 | Msa0358060:CDS |
| CTTGGAGTGTTGATTGATAC+CGG | 0.481427 | 3_1:+42791483 | None:intergenic |
| AGCAACAGCCACGTCTGTCT+TGG | 0.481577 | 3_1:+42793491 | None:intergenic |
| GGTATACCAATATCTGGAAA+AGG | 0.489627 | 3_1:-42792744 | Msa0358060:CDS |
| ATAATGATAATGTACCGTTA+CGG | 0.489717 | 3_1:+42792598 | None:intergenic |
| GAGTGGCAGCACCCCTCTGC+CGG | 0.491471 | 3_1:-42794354 | Msa0358060:CDS |
| CAGCCAAGAACTACTTGCTA+AGG | 0.492651 | 3_1:-42792643 | Msa0358060:CDS |
| CTTTCAGTGTTGCTGCTCCT+CGG | 0.496117 | 3_1:+42792829 | None:intergenic |
| ACTCGAGGACTCTCCGGCAG+AGG | 0.496378 | 3_1:+42794341 | None:intergenic |
| CTCGAGGACTCTCCGGCAGA+GGG | 0.502516 | 3_1:+42794342 | None:intergenic |
| ATAGGAACTCGAGGACTCTC+CGG | 0.511006 | 3_1:+42794335 | None:intergenic |
| TTACAAATGCTGCAGGTTGG+TGG | 0.513407 | 3_1:+42791400 | None:intergenic |
| TCAGGAATAGAACCATTTGA+AGG | 0.517205 | 3_1:+42794218 | None:intergenic |
| ATATGAATCGTTAAAGTCTA+CGG | 0.525493 | 3_1:-42791610 | Msa0358060:CDS |
| CTTACTGCTGCAGCTGCCAC+AGG | 0.532447 | 3_1:-42793342 | Msa0358060:intron |
| ACAAAACAAGGATGAGAAGA+TGG | 0.533868 | 3_1:-42793514 | Msa0358060:CDS |
| TTTAACGATTCATATGATCC+AGG | 0.536010 | 3_1:+42791618 | None:intergenic |
| AGCGAACCTTTGAACGGTGG+CGG | 0.538212 | 3_1:-42793936 | Msa0358060:CDS |
| GAATATGATATCTGGACTCA+AGG | 0.538804 | 3_1:-42792088 | Msa0358060:CDS |
| ACACCATTGGAGAAAGGAAT+GGG | 0.539484 | 3_1:-42792768 | Msa0358060:CDS |
| TTACTCAAACGCACCCGTAA+CGG | 0.540696 | 3_1:-42792612 | Msa0358060:intron |
| CAAATGCTGCAGGTTGGTGG+TGG | 0.541546 | 3_1:+42791403 | None:intergenic |
| AGATCTCTTCCTGGCCATGC+TGG | 0.541598 | 3_1:+42792196 | None:intergenic |
| ATTTGCTGTTGCCGCCGCGA+TGG | 0.542104 | 3_1:+42793545 | None:intergenic |
| TGGTGGTAGTGGCTGTGGAA+TGG | 0.546348 | 3_1:+42791308 | None:intergenic |
| AATATGATATCTGGACTCAA+GGG | 0.546826 | 3_1:-42792087 | Msa0358060:CDS |
| GGAAGAGATCTATCAGATGA+TGG | 0.550853 | 3_1:-42792184 | Msa0358060:CDS |
| CGGTATCAATCAACACTCCA+AGG | 0.551287 | 3_1:-42791482 | Msa0358060:CDS |
| ATCAGAGATTTCGATGGACC+TGG | 0.551970 | 3_1:+42791213 | None:intergenic |
| GCAGTAACACCATTGGAGAA+AGG | 0.553514 | 3_1:-42792774 | Msa0358060:CDS |
| AACACCATTGGAGAAAGGAA+TGG | 0.555483 | 3_1:-42792769 | Msa0358060:CDS |
| ATCACTGAACCATATGATCC+AGG | 0.557945 | 3_1:-42791231 | Msa0358060:CDS |
| AAAGAACCGCCACCGTTCAA+AGG | 0.558652 | 3_1:+42793930 | None:intergenic |
| GACGAGCTGCGAAGTAGCAG+AGG | 0.558780 | 3_1:+42794127 | None:intergenic |
| TTGAGTTATTCAAAGAGACC+TGG | 0.560456 | 3_1:-42791636 | Msa0358060:intron |
| TGAATTTGACGATGTTGTCA+AGG | 0.561851 | 3_1:-42793874 | Msa0358060:intron |
| GAGATACAATGGAAATCCAA+TGG | 0.564791 | 3_1:+42791366 | None:intergenic |
| ACGGATTTACCAGCATGGCC+AGG | 0.567017 | 3_1:-42792205 | Msa0358060:CDS |
| GTCGCCAACAATGGCAGAGA+CGG | 0.568307 | 3_1:+42791551 | None:intergenic |
| GCGCGACCACCTTGCATCGG+TGG | 0.573326 | 3_1:-42793409 | Msa0358060:CDS |
| TGTGGAGGCTGCTGAAGCAA+TGG | 0.573897 | 3_1:-42793439 | Msa0358060:CDS |
| GAAGTGTCGCCATTAACGTC+AGG | 0.575049 | 3_1:-42793975 | Msa0358060:CDS |
| CTGAGCTGACCACCGATGCA+AGG | 0.581486 | 3_1:+42793400 | None:intergenic |
| CGGATTGAAAACAGACTCGA+GGG | 0.581533 | 3_1:-42792143 | Msa0358060:CDS |
| TATGTCACACTCTGCTAGAG+AGG | 0.585361 | 3_1:-42794093 | Msa0358060:intron |
| TAACTGCAGGTGATCTACAC+TGG | 0.586350 | 3_1:-42792502 | Msa0358060:intron |
| CATGCTTTGGACTGAGCAGA+CGG | 0.588822 | 3_1:+42791529 | None:intergenic |
| ACTGAAAGCTAGAGCTGTGA+AGG | 0.590453 | 3_1:-42792814 | Msa0358060:CDS |
| TGGTGCTGCAGTAACACCAT+TGG | 0.591757 | 3_1:-42792781 | Msa0358060:CDS |
| GTGGAGGCTGCTGAAGCAAT+GGG | 0.591770 | 3_1:-42793438 | Msa0358060:CDS |
| GGAGAAATTGTGAATGCAGA+TGG | 0.594536 | 3_1:-42792681 | Msa0358060:CDS |
| GAGCAGACGGTCGCCAACAA+TGG | 0.596169 | 3_1:+42791542 | None:intergenic |
| TGCTATAGCTGCCATCGCGG+CGG | 0.598800 | 3_1:-42793556 | Msa0358060:CDS |
| GCAAATGCTGGTGTTGGCAA+TGG | 0.603762 | 3_1:-42793705 | Msa0358060:CDS |
| TAGTTGCTTCAGAGATACAA+TGG | 0.609236 | 3_1:+42791355 | None:intergenic |
| TGAGCGCGACCACCTTGCAT+CGG | 0.609517 | 3_1:-42793412 | Msa0358060:CDS |
| AGTGTGACATAATGCGCTCA+AGG | 0.610828 | 3_1:+42794105 | None:intergenic |
| ATTCACCCATTATTCAATGG+TGG | 0.611363 | 3_1:-42793732 | Msa0358060:CDS |
| TCTAGTTGCTGCACAATGTG+TGG | 0.616322 | 3_1:-42793457 | Msa0358060:CDS |
| TGTTCAGGACCTAAAACTGT+AGG | 0.617678 | 3_1:-42793675 | Msa0358060:CDS |
| GGAAGAGCAAATGCTGGTGT+TGG | 0.620253 | 3_1:-42793711 | Msa0358060:CDS |
| AAATTCATCAACACAAAACA+AGG | 0.621432 | 3_1:-42793526 | Msa0358060:CDS |
| TATTGTGCTAGACGTGTGCA+CGG | 0.621908 | 3_1:-42792224 | Msa0358060:CDS |
| TGCTGGTGTTGGCAATGGCA+CGG | 0.627563 | 3_1:-42793700 | Msa0358060:CDS |
| AGCCAAGAACTACTTGCTAA+GGG | 0.627681 | 3_1:-42792642 | Msa0358060:CDS |
| AGAGATCTTCAGATAAAGAG+TGG | 0.631675 | 3_1:+42794183 | None:intergenic |
| CACAGCAGCGAACCTTTGAA+CGG | 0.633000 | 3_1:-42793942 | Msa0358060:CDS |
| GCCACTACCACCAAAACCGT+CGG | 0.635853 | 3_1:-42791298 | Msa0358060:CDS |
| AGTTGCTGCACAATGTGTGG+AGG | 0.636318 | 3_1:-42793454 | Msa0358060:CDS |
| GAAGGCATGCATGAAGAATG+AGG | 0.646788 | 3_1:+42794236 | None:intergenic |
| ACATTGTGCAGCAACTAGAG+TGG | 0.648949 | 3_1:+42793461 | None:intergenic |
| TAGTGATCGATAACGACACA+AGG | 0.654030 | 3_1:+42791253 | None:intergenic |
| ATATGATATCTGGACTCAAG+GGG | 0.656490 | 3_1:-42792086 | Msa0358060:CDS |
| ATAGTGATCAGAGATTTCGA+TGG | 0.656718 | 3_1:+42791207 | None:intergenic |
| AGAAATTCCATAGGAACTCG+AGG | 0.657611 | 3_1:+42794326 | None:intergenic |
| AATGGTGGAAGAGCAAATGC+TGG | 0.658370 | 3_1:-42793717 | Msa0358060:CDS |
| TTCTGCTATAGCTGCCATCG+CGG | 0.658786 | 3_1:-42793559 | Msa0358060:CDS |
| TCGGATTGAAAACAGACTCG+AGG | 0.660819 | 3_1:-42792144 | Msa0358060:CDS |
| TTAGATGCGTTATTATCCGA+CGG | 0.662367 | 3_1:+42791282 | None:intergenic |
| TGAGGTGGTTGAGAATGAGC+TGG | 0.666197 | 3_1:+42794254 | None:intergenic |
| GACCTAAAACTGTAGGAAGG+TGG | 0.671239 | 3_1:-42793668 | Msa0358060:CDS |
| GGTATCAATCAACACTCCAA+GGG | 0.673986 | 3_1:-42791481 | Msa0358060:CDS |
| GACCTTGACAGAAATTCCAT+AGG | 0.674441 | 3_1:+42794317 | None:intergenic |
| CCTTGATATGTAGCTCTCCG+AGG | 0.677249 | 3_1:-42792846 | Msa0358060:intron |
| CAGGACCTAAAACTGTAGGA+AGG | 0.679190 | 3_1:-42793671 | Msa0358060:CDS |
| ACTAACATCCAATTCATAGG+TGG | 0.680779 | 3_1:-42791336 | Msa0358060:CDS |
| GAAGATGGCCAAGACAGACG+TGG | 0.685054 | 3_1:-42793499 | Msa0358060:CDS |
| CGTCCTGAATCGGTTCCGAG+TGG | 0.686606 | 3_1:-42794371 | Msa0358060:CDS |
| CCATTGGAGAAAGGAATGGG+AGG | 0.688222 | 3_1:-42792765 | Msa0358060:CDS |
| TCGAGGACTCTCCGGCAGAG+GGG | 0.689304 | 3_1:+42794343 | None:intergenic |
| AGCTGACCACCGATGCAAGG+TGG | 0.692885 | 3_1:+42793403 | None:intergenic |
| AGCAGCGAACCTTTGAACGG+TGG | 0.695192 | 3_1:-42793939 | Msa0358060:CDS |
| TGTGCACGGATTTACCAGCA+TGG | 0.708131 | 3_1:-42792210 | Msa0358060:CDS |
| GCTGTGAAGGACTTATGGAA+TGG | 0.718299 | 3_1:-42792801 | Msa0358060:CDS |
| GCTGCACGCTACAATTACTG+TGG | 0.727804 | 3_1:-42793592 | Msa0358060:CDS |
| AGTGATCGATAACGACACAA+GGG | 0.740645 | 3_1:+42791254 | None:intergenic |
| GGATTGAAAACAGACTCGAG+GGG | 0.769794 | 3_1:-42792142 | Msa0358060:CDS |
| GGCATGCATGAAGAATGAGG+TGG | 0.810503 | 3_1:+42794239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATTATATATGTAAC+AGG | - | chr3_1:42791595-42791614 | Msa0358060:CDS | 10.0% |
| !!! | AAAACAATTAAATTCTGTTT+TGG | - | chr3_1:42793064-42793083 | Msa0358060:intron | 15.0% |
| !!! | AGTTCTATATTTTTACTATG+TGG | - | chr3_1:42791785-42791804 | Msa0358060:intron | 20.0% |
| !! | GCATCTATTTCATAATATAA+TGG | - | chr3_1:42792298-42792317 | Msa0358060:intron | 20.0% |
| !! | TGTATTTAACTAAAATTCTC+TGG | + | chr3_1:42792367-42792386 | None:intergenic | 20.0% |
| !!! | ACATTTTAATGGTTTATTGT+AGG | + | chr3_1:42792493-42792512 | None:intergenic | 20.0% |
| !!! | AATAGTCTTAGACATTTTAA+TGG | + | chr3_1:42792504-42792523 | None:intergenic | 20.0% |
| !!! | ATTTAATTAGCGATTTTGTA+TGG | + | chr3_1:42792596-42792615 | None:intergenic | 20.0% |
| !! | TTAATAGCATAATCTGTAAT+TGG | + | chr3_1:42793022-42793041 | None:intergenic | 20.0% |
| !! | TATTAAGACTACAAAATTTC+TGG | - | chr3_1:42793036-42793055 | Msa0358060:intron | 20.0% |
| !!! | ATAAAGTGTTGAATCAAATT+TGG | + | chr3_1:42793611-42793630 | None:intergenic | 20.0% |
| !! | TTGTAATATCTATATACCAA+AGG | + | chr3_1:42793779-42793798 | None:intergenic | 20.0% |
| !!! | TTTTAAAATGAACTCATACT+TGG | - | chr3_1:42793881-42793900 | Msa0358060:CDS | 20.0% |
| ! | AATTCATCTGAATGAGAAAT+TGG | + | chr3_1:42791704-42791723 | None:intergenic | 25.0% |
| ! | AAATTCATCAACACAAAACA+AGG | - | chr3_1:42792066-42792085 | Msa0358060:CDS | 25.0% |
| ! | ATCACAATTCTTGATATTAC+AGG | - | chr3_1:42792398-42792417 | Msa0358060:intron | 25.0% |
| ! | TTACATAAACTGCGAATATA+AGG | + | chr3_1:42792714-42792733 | None:intergenic | 25.0% |
| ! | CAGTTTATGTAATGTGTATA+TGG | - | chr3_1:42792722-42792741 | Msa0358060:CDS | 25.0% |
| !! | TTATTACCTTTTCCAGATAT+TGG | + | chr3_1:42792857-42792876 | None:intergenic | 25.0% |
| !! | ATAATGATAATGTACCGTTA+CGG | + | chr3_1:42792997-42793016 | None:intergenic | 25.0% |
| ! | ATCAAAGAGAATATGATATC+TGG | - | chr3_1:42793496-42793515 | Msa0358060:CDS | 25.0% |
| !! | ATTGACAACTATTCAAGTTA+CGG | + | chr3_1:42793700-42793719 | None:intergenic | 25.0% |
| ! | CAAAATGCGAAAAGTAATTA+CGG | - | chr3_1:42793828-42793847 | Msa0358060:intron | 25.0% |
| ! | AAAATGCGAAAAGTAATTAC+GGG | - | chr3_1:42793829-42793848 | Msa0358060:intron | 25.0% |
| ! | ATATGAATCGTTAAAGTCTA+CGG | - | chr3_1:42793982-42794001 | Msa0358060:intron | 25.0% |
| !!! | CAATGTATGTGCAGTTTTTT+CGG | - | chr3_1:42791825-42791844 | Msa0358060:intron | 30.0% |
| AAATAGATGCTCAATGATGT+GGG | + | chr3_1:42792288-42792307 | None:intergenic | 30.0% | |
| TAAGACTATTATAAGCCACT+AGG | - | chr3_1:42792514-42792533 | Msa0358060:intron | 30.0% | |
| ! | AATTAGCGATTTTGTATGGT+TGG | + | chr3_1:42792592-42792611 | None:intergenic | 30.0% |
| ! | CACTTAACTTTAGTTTCACA+AGG | - | chr3_1:42792632-42792651 | Msa0358060:CDS | 30.0% |
| ! | TAATGATAATGTACCGTTAC+GGG | + | chr3_1:42792996-42793015 | None:intergenic | 30.0% |
| !!! | ACAATTTTTTTTACCAGCAC+AGG | - | chr3_1:42793306-42793325 | Msa0358060:intron | 30.0% |
| AATATGATATCTGGACTCAA+GGG | - | chr3_1:42793505-42793524 | Msa0358060:CDS | 30.0% | |
| !! | CGTAATTACTTTTCGCATTT+TGG | + | chr3_1:42793830-42793849 | None:intergenic | 30.0% |
| ACTTGGAGACAATTATTACA+TGG | - | chr3_1:42793898-42793917 | Msa0358060:CDS | 30.0% | |
| TTTAACGATTCATATGATCC+AGG | + | chr3_1:42793977-42793996 | None:intergenic | 30.0% | |
| CCACACAAAAATAACATATC+CGG | - | chr3_1:42794090-42794109 | Msa0358060:intron | 30.0% | |
| !! | TGTAAAAACTCTGAAACCAT+TGG | - | chr3_1:42794210-42794229 | Msa0358060:CDS | 30.0% |
| TTCCTATGGAATTTCTGTCA+AGG | - | chr3_1:42791273-42791292 | Msa0358060:CDS | 35.0% | |
| TCAGGAATAGAACCATTTGA+AGG | + | chr3_1:42791377-42791396 | None:intergenic | 35.0% | |
| TTCAGATAAAGAGTGGTTAG+TGG | + | chr3_1:42791405-42791424 | None:intergenic | 35.0% | |
| AGAGATCTTCAGATAAAGAG+TGG | + | chr3_1:42791412-42791431 | None:intergenic | 35.0% | |
| TGAATGTGATTGTGTCTTTG+TGG | + | chr3_1:42791545-42791564 | None:intergenic | 35.0% | |
| GATAATCTACCTGACGTTAA+TGG | + | chr3_1:42791629-42791648 | None:intergenic | 35.0% | |
| TGAATTTGACGATGTTGTCA+AGG | - | chr3_1:42791718-42791737 | Msa0358060:intron | 35.0% | |
| AAAACTGCACATACATTGAC+AGG | + | chr3_1:42791823-42791842 | None:intergenic | 35.0% | |
| TCCATTCACCCATTATTCAA+TGG | - | chr3_1:42791857-42791876 | Msa0358060:intron | 35.0% | |
| !! | ACCATTGAATAATGGGTGAA+TGG | + | chr3_1:42791861-42791880 | None:intergenic | 35.0% |
| ATTCACCCATTATTCAATGG+TGG | - | chr3_1:42791860-42791879 | Msa0358060:intron | 35.0% | |
| CTCTTCCACCATTGAATAAT+GGG | + | chr3_1:42791868-42791887 | None:intergenic | 35.0% | |
| ACAAAACAAGGATGAGAAGA+TGG | - | chr3_1:42792078-42792097 | Msa0358060:CDS | 35.0% | |
| GAAATAGATGCTCAATGATG+TGG | + | chr3_1:42792289-42792308 | None:intergenic | 35.0% | |
| GGAATCAATGTTTCATATCG+CGG | - | chr3_1:42792319-42792338 | Msa0358060:intron | 35.0% | |
| GCATAATCTAAATGTCCTAG+TGG | + | chr3_1:42792532-42792551 | None:intergenic | 35.0% | |
| GGACATTTAGATTATGCTCT+TGG | - | chr3_1:42792535-42792554 | Msa0358060:intron | 35.0% | |
| TTAGATTATGCTCTTGGACA+AGG | - | chr3_1:42792541-42792560 | Msa0358060:intron | 35.0% | |
| GGTATACCAATATCTGGAAA+AGG | - | chr3_1:42792848-42792867 | Msa0358060:intron | 35.0% | |
| !!! | GTGAATGCAGATGGTTTTAT+AGG | - | chr3_1:42792920-42792939 | Msa0358060:intron | 35.0% |
| TCTGTTTACATACATCGAAC+AGG | - | chr3_1:42793122-42793141 | Msa0358060:intron | 35.0% | |
| GAATATGATATCTGGACTCA+AGG | - | chr3_1:42793504-42793523 | Msa0358060:CDS | 35.0% | |
| ATATGATATCTGGACTCAAG+GGG | - | chr3_1:42793506-42793525 | Msa0358060:CDS | 35.0% | |
| ACTAGCAATAACAGAATGAG+AGG | + | chr3_1:42793586-42793605 | None:intergenic | 35.0% | |
| CACTCTTTCACTATTTCCTT+TGG | - | chr3_1:42793760-42793779 | Msa0358060:intron | 35.0% | |
| TTGAGTTATTCAAAGAGACC+TGG | - | chr3_1:42793956-42793975 | Msa0358060:CDS | 35.0% | |
| ACAAAATCGTCAAGTGTAGA+AGG | + | chr3_1:42794013-42794032 | None:intergenic | 35.0% | |
| !!! | CCGGATATGTTATTTTTGTG+TGG | + | chr3_1:42794093-42794112 | None:intergenic | 35.0% |
| ! | TTTTTACAAATGCTGCAGGT+TGG | + | chr3_1:42794198-42794217 | None:intergenic | 35.0% |
| ! | AGAGTTTTTACAAATGCTGC+AGG | + | chr3_1:42794202-42794221 | None:intergenic | 35.0% |
| GAGATACAATGGAAATCCAA+TGG | + | chr3_1:42794229-42794248 | None:intergenic | 35.0% | |
| TAGTTGCTTCAGAGATACAA+TGG | + | chr3_1:42794240-42794259 | None:intergenic | 35.0% | |
| GCAACTAACATCCAATTCAT+AGG | - | chr3_1:42794253-42794272 | Msa0358060:CDS | 35.0% | |
| ACTAACATCCAATTCATAGG+TGG | - | chr3_1:42794256-42794275 | Msa0358060:CDS | 35.0% | |
| TTAGATGCGTTATTATCCGA+CGG | + | chr3_1:42794313-42794332 | None:intergenic | 35.0% | |
| ATAGTGATCAGAGATTTCGA+TGG | + | chr3_1:42794388-42794407 | None:intergenic | 35.0% | |
| AGAAATTCCATAGGAACTCG+AGG | + | chr3_1:42791269-42791288 | None:intergenic | 40.0% | |
| GACCTTGACAGAAATTCCAT+AGG | + | chr3_1:42791278-42791297 | None:intergenic | 40.0% | |
| TGGAATTTCTGTCAAGGTCA+TGG | - | chr3_1:42791279-42791298 | Msa0358060:CDS | 40.0% | |
| TCTTCATGCATGCCTTCAAA+TGG | - | chr3_1:42791362-42791381 | Msa0358060:CDS | 40.0% | |
| GCTCTTCCACCATTGAATAA+TGG | + | chr3_1:42791869-42791888 | None:intergenic | 40.0% | |
| TGTTCAGGACCTAAAACTGT+AGG | - | chr3_1:42791917-42791936 | Msa0358060:intron | 40.0% | |
| ! | AACCACCTTCCTACAGTTTT+AGG | + | chr3_1:42791929-42791948 | None:intergenic | 40.0% |
| TATGTTTCGATTGCCTCAAG+AGG | + | chr3_1:42792446-42792465 | None:intergenic | 40.0% | |
| AACACCATTGGAGAAAGGAA+TGG | - | chr3_1:42792823-42792842 | Msa0358060:CDS | 40.0% | |
| ACACCATTGGAGAAAGGAAT+GGG | - | chr3_1:42792824-42792843 | Msa0358060:CDS | 40.0% | |
| ! | ATGGGAGGTATACCAATATC+TGG | - | chr3_1:42792842-42792861 | Msa0358060:intron | 40.0% |
| CACAATTTCTCCACTATCAC+TGG | + | chr3_1:42792903-42792922 | None:intergenic | 40.0% | |
| GGAGAAATTGTGAATGCAGA+TGG | - | chr3_1:42792911-42792930 | Msa0358060:intron | 40.0% | |
| ! | AGCCAAGAACTACTTGCTAA+GGG | - | chr3_1:42792950-42792969 | Msa0358060:intron | 40.0% |
| !!! | TCTGTTTTGGTGATAACTGC+AGG | - | chr3_1:42793077-42793096 | Msa0358060:intron | 40.0% |
| TACGTGTTCATTCGTTGACA+AGG | - | chr3_1:42793190-42793209 | Msa0358060:intron | 40.0% | |
| ACAAGGCTTGCAAACATTTC+AGG | - | chr3_1:42793207-42793226 | Msa0358060:intron | 40.0% | |
| ATGAAGAGCAAACATGTTGC+AGG | - | chr3_1:42793241-42793260 | Msa0358060:intron | 40.0% | |
| ! | TTTTACCAGCACAGGTACAT+AGG | - | chr3_1:42793314-42793333 | Msa0358060:intron | 40.0% |
| TCATCTGATAGATCTCTTCC+TGG | + | chr3_1:42793408-42793427 | None:intergenic | 40.0% | |
| GGAAGAGATCTATCAGATGA+TGG | - | chr3_1:42793408-42793427 | Msa0358060:CDS | 40.0% | |
| CTGCATCTGAGTACTTGATA+TGG | + | chr3_1:42793674-42793693 | None:intergenic | 40.0% | |
| TTTGTGTGGTTGTCATGCTT+TGG | + | chr3_1:42794079-42794098 | None:intergenic | 40.0% | |
| !! | CTTGGAGTGTTGATTGATAC+CGG | + | chr3_1:42794112-42794131 | None:intergenic | 40.0% |
| GGTATCAATCAACACTCCAA+GGG | - | chr3_1:42794111-42794130 | Msa0358060:CDS | 40.0% | |
| !! | TTATTATCCGACGGTTTTGG+TGG | + | chr3_1:42794304-42794323 | None:intergenic | 40.0% |
| AGTGATCGATAACGACACAA+GGG | + | chr3_1:42794341-42794360 | None:intergenic | 40.0% | |
| TAGTGATCGATAACGACACA+AGG | + | chr3_1:42794342-42794361 | None:intergenic | 40.0% | |
| ATCACTGAACCATATGATCC+AGG | - | chr3_1:42794361-42794380 | Msa0358060:CDS | 40.0% | |
| TCAGGACGCAGACAATTGAT+TGG | + | chr3_1:42791209-42791228 | None:intergenic | 45.0% | |
| CAATTGTCTGCGTCCTGAAT+CGG | - | chr3_1:42791211-42791230 | Msa0358060:CDS | 45.0% | |
| ! | GAAGGCATGCATGAAGAATG+AGG | + | chr3_1:42791359-42791378 | None:intergenic | 45.0% |
| GAGTGGTTAGTGGTTTCTTC+AGG | + | chr3_1:42791395-42791414 | None:intergenic | 45.0% | |
| AGTGTGACATAATGCGCTCA+AGG | + | chr3_1:42791490-42791509 | None:intergenic | 45.0% | |
| TATGTCACACTCTGCTAGAG+AGG | - | chr3_1:42791499-42791518 | Msa0358060:CDS | 45.0% | |
| ! | AATGGTGGAAGAGCAAATGC+TGG | - | chr3_1:42791875-42791894 | Msa0358060:intron | 45.0% |
| CAGGACCTAAAACTGTAGGA+AGG | - | chr3_1:42791921-42791940 | Msa0358060:intron | 45.0% | |
| GACCTAAAACTGTAGGAAGG+TGG | - | chr3_1:42791924-42791943 | Msa0358060:intron | 45.0% | |
| ACATTGTGCAGCAACTAGAG+TGG | + | chr3_1:42792134-42792153 | None:intergenic | 45.0% | |
| TCTAGTTGCTGCACAATGTG+TGG | - | chr3_1:42792135-42792154 | Msa0358060:CDS | 45.0% | |
| ! | TGGGCTAATAGTCTTACCTG+TGG | + | chr3_1:42792269-42792288 | None:intergenic | 45.0% |
| ACTGAAAGCTAGAGCTGTGA+AGG | - | chr3_1:42792778-42792797 | Msa0358060:CDS | 45.0% | |
| CTAGAGCTGTGAAGGACTTA+TGG | - | chr3_1:42792786-42792805 | Msa0358060:CDS | 45.0% | |
| GCTGTGAAGGACTTATGGAA+TGG | - | chr3_1:42792791-42792810 | Msa0358060:CDS | 45.0% | |
| GCAGTAACACCATTGGAGAA+AGG | - | chr3_1:42792818-42792837 | Msa0358060:CDS | 45.0% | |
| AACAACAGCTCCAGTGATAG+TGG | - | chr3_1:42792890-42792909 | Msa0358060:intron | 45.0% | |
| ! | CAGCCAAGAACTACTTGCTA+AGG | - | chr3_1:42792949-42792968 | Msa0358060:intron | 45.0% |
| TGCCCTTAGCAAGTAGTTCT+TGG | + | chr3_1:42792955-42792974 | None:intergenic | 45.0% | |
| TTACTCAAACGCACCCGTAA+CGG | - | chr3_1:42792980-42792999 | Msa0358060:intron | 45.0% | |
| TAACTGCAGGTGATCTACAC+TGG | - | chr3_1:42793090-42793109 | Msa0358060:intron | 45.0% | |
| TATGACCTATGTACCTGTGC+TGG | + | chr3_1:42793322-42793341 | None:intergenic | 45.0% | |
| TATTGTGCTAGACGTGTGCA+CGG | - | chr3_1:42793368-42793387 | Msa0358060:CDS | 45.0% | |
| GGAGAAAAACGACGCTACTT+CGG | - | chr3_1:42793429-42793448 | Msa0358060:CDS | 45.0% | |
| TCGGATTGAAAACAGACTCG+AGG | - | chr3_1:42793448-42793467 | Msa0358060:CDS | 45.0% | |
| CGGATTGAAAACAGACTCGA+GGG | - | chr3_1:42793449-42793468 | Msa0358060:CDS | 45.0% | |
| GGATTGAAAACAGACTCGAG+GGG | - | chr3_1:42793450-42793469 | Msa0358060:CDS | 45.0% | |
| TATTCCGTCTCTGCCATTGT+TGG | - | chr3_1:42794037-42794056 | Msa0358060:intron | 45.0% | |
| CGGTATCAATCAACACTCCA+AGG | - | chr3_1:42794110-42794129 | Msa0358060:CDS | 45.0% | |
| AAAACCGTGTCCTTTGAACG+AGG | + | chr3_1:42794142-42794161 | None:intergenic | 45.0% | |
| ! | TTACAAATGCTGCAGGTTGG+TGG | + | chr3_1:42794195-42794214 | None:intergenic | 45.0% |
| ! | GCGTTATTATCCGACGGTTT+TGG | + | chr3_1:42794307-42794326 | None:intergenic | 45.0% |
| TTCGATGGACCTGGATCATA+TGG | + | chr3_1:42794373-42794392 | None:intergenic | 45.0% | |
| ATCAGAGATTTCGATGGACC+TGG | + | chr3_1:42794382-42794401 | None:intergenic | 45.0% | |
| ATAGGAACTCGAGGACTCTC+CGG | + | chr3_1:42791260-42791279 | None:intergenic | 50.0% | |
| TGAGGTGGTTGAGAATGAGC+TGG | + | chr3_1:42791341-42791360 | None:intergenic | 50.0% | |
| GGCATGCATGAAGAATGAGG+TGG | + | chr3_1:42791356-42791375 | None:intergenic | 50.0% | |
| !! | GAAGTGTCGCCATTAACGTC+AGG | - | chr3_1:42791617-42791636 | Msa0358060:CDS | 50.0% |
| CACAGCAGCGAACCTTTGAA+CGG | - | chr3_1:42791650-42791669 | Msa0358060:intron | 50.0% | |
| AAAGAACCGCCACCGTTCAA+AGG | + | chr3_1:42791665-42791684 | None:intergenic | 50.0% | |
| ! | AACGGTGGCGGTTCTTTAAC+TGG | - | chr3_1:42791668-42791687 | Msa0358060:intron | 50.0% |
| GGAAGAGCAAATGCTGGTGT+TGG | - | chr3_1:42791881-42791900 | Msa0358060:intron | 50.0% | |
| !! | GCAAATGCTGGTGTTGGCAA+TGG | - | chr3_1:42791887-42791906 | Msa0358060:intron | 50.0% |
| GCTGCACGCTACAATTACTG+TGG | - | chr3_1:42792000-42792019 | Msa0358060:intron | 50.0% | |
| TTCTGCTATAGCTGCCATCG+CGG | - | chr3_1:42792033-42792052 | Msa0358060:intron | 50.0% | |
| AGTTGCTGCACAATGTGTGG+AGG | - | chr3_1:42792138-42792157 | Msa0358060:CDS | 50.0% | |
| CTCAAGAGGACTACGATCAG+GGG | + | chr3_1:42792432-42792451 | None:intergenic | 50.0% | |
| CCTCAAGAGGACTACGATCA+GGG | + | chr3_1:42792433-42792452 | None:intergenic | 50.0% | |
| CCTCGGAGAGCTACATATCA+AGG | + | chr3_1:42792749-42792768 | None:intergenic | 50.0% | |
| CCTTGATATGTAGCTCTCCG+AGG | - | chr3_1:42792746-42792765 | Msa0358060:CDS | 50.0% | |
| ! | CTTTCAGTGTTGCTGCTCCT+CGG | + | chr3_1:42792766-42792785 | None:intergenic | 50.0% |
| !! | TGGTGCTGCAGTAACACCAT+TGG | - | chr3_1:42792811-42792830 | Msa0358060:CDS | 50.0% |
| CCTCCCATTCCTTTCTCCAA+TGG | + | chr3_1:42792830-42792849 | None:intergenic | 50.0% | |
| CCATTGGAGAAAGGAATGGG+AGG | - | chr3_1:42792827-42792846 | Msa0358060:CDS | 50.0% | |
| AGCAAGTAGTTCTTGGCTGC+AGG | + | chr3_1:42792948-42792967 | None:intergenic | 50.0% | |
| TGTGCACGGATTTACCAGCA+TGG | - | chr3_1:42793382-42793401 | Msa0358060:CDS | 50.0% | |
| TCTGGACTCAAGGGGTTTCT+AGG | - | chr3_1:42793514-42793533 | Msa0358060:CDS | 50.0% | |
| ! | CATGCTTTGGACTGAGCAGA+CGG | + | chr3_1:42794066-42794085 | None:intergenic | 50.0% |
| TGGCGAAGCCACCTATGAAT+TGG | + | chr3_1:42794267-42794286 | None:intergenic | 50.0% | |
| GGAGAGTCCTCGAGTTCCTA+TGG | - | chr3_1:42791259-42791278 | Msa0358060:CDS | 55.0% | |
| AGCAGCGAACCTTTGAACGG+TGG | - | chr3_1:42791653-42791672 | Msa0358060:intron | 55.0% | |
| AGCGAACCTTTGAACGGTGG+CGG | - | chr3_1:42791656-42791675 | Msa0358060:intron | 55.0% | |
| !! | TGCTGGTGTTGGCAATGGCA+CGG | - | chr3_1:42791892-42791911 | Msa0358060:intron | 55.0% |
| GAAGATGGCCAAGACAGACG+TGG | - | chr3_1:42792093-42792112 | Msa0358060:CDS | 55.0% | |
| AGCAACAGCCACGTCTGTCT+TGG | + | chr3_1:42792104-42792123 | None:intergenic | 55.0% | |
| ! | GACAGACGTGGCTGTTGCTT+CGG | - | chr3_1:42792105-42792124 | Msa0358060:CDS | 55.0% |
| TGTGGAGGCTGCTGAAGCAA+TGG | - | chr3_1:42792153-42792172 | Msa0358060:CDS | 55.0% | |
| GTGGAGGCTGCTGAAGCAAT+GGG | - | chr3_1:42792154-42792173 | Msa0358060:CDS | 55.0% | |
| CCCTGATCGTAGTCCTCTTG+AGG | - | chr3_1:42792430-42792449 | Msa0358060:intron | 55.0% | |
| GCCTCAAGAGGACTACGATC+AGG | + | chr3_1:42792434-42792453 | None:intergenic | 55.0% | |
| ACGGATTTACCAGCATGGCC+AGG | - | chr3_1:42793387-42793406 | Msa0358060:CDS | 55.0% | |
| AGATCTCTTCCTGGCCATGC+TGG | + | chr3_1:42793399-42793418 | None:intergenic | 55.0% | |
| GTCGCCAACAATGGCAGAGA+CGG | + | chr3_1:42794044-42794063 | None:intergenic | 55.0% | |
| TTTGAACGAGGCTCGACCCT+TGG | + | chr3_1:42794130-42794149 | None:intergenic | 55.0% | |
| AAGGGTCGAGCCTCGTTCAA+AGG | - | chr3_1:42794129-42794148 | Msa0358060:CDS | 55.0% | |
| CGAGCCTCGTTCAAAGGACA+CGG | - | chr3_1:42794135-42794154 | Msa0358060:CDS | 55.0% | |
| !! | CAAATGCTGCAGGTTGGTGG+TGG | + | chr3_1:42794192-42794211 | None:intergenic | 55.0% |
| !! | TGGTGGTAGTGGCTGTGGAA+TGG | + | chr3_1:42794287-42794306 | None:intergenic | 55.0% |
| !!! | GGTTTTGGTGGTAGTGGCTG+TGG | + | chr3_1:42794292-42794311 | None:intergenic | 55.0% |
| GCCACTACCACCAAAACCGT+CGG | - | chr3_1:42794294-42794313 | Msa0358060:CDS | 55.0% | |
| !! | TCCGACGGTTTTGGTGGTAG+TGG | + | chr3_1:42794298-42794317 | None:intergenic | 55.0% |
| ! | CGTCCTGAATCGGTTCCGAG+TGG | - | chr3_1:42791221-42791240 | Msa0358060:CDS | 60.0% |
| ! | CTGCCACTCGGAACCGATTC+AGG | + | chr3_1:42791227-42791246 | None:intergenic | 60.0% |
| GACGAGCTGCGAAGTAGCAG+AGG | + | chr3_1:42791468-42791487 | None:intergenic | 60.0% | |
| ! | GGCAATGGCACGGCTTGTTC+AGG | - | chr3_1:42791902-42791921 | Msa0358060:intron | 60.0% |
| TGCTATAGCTGCCATCGCGG+CGG | - | chr3_1:42792036-42792055 | Msa0358060:intron | 60.0% | |
| !! | ATTTGCTGTTGCCGCCGCGA+TGG | + | chr3_1:42792050-42792069 | None:intergenic | 60.0% |
| TGAGCGCGACCACCTTGCAT+CGG | - | chr3_1:42792180-42792199 | Msa0358060:CDS | 60.0% | |
| AGCTGACCACCGATGCAAGG+TGG | + | chr3_1:42792192-42792211 | None:intergenic | 60.0% | |
| CTGAGCTGACCACCGATGCA+AGG | + | chr3_1:42792195-42792214 | None:intergenic | 60.0% | |
| CTTACTGCTGCAGCTGCCAC+AGG | - | chr3_1:42792250-42792269 | Msa0358060:intron | 60.0% | |
| GAGCAGACGGTCGCCAACAA+TGG | + | chr3_1:42794053-42794072 | None:intergenic | 60.0% | |
| TCGAGGACTCTCCGGCAGAG+GGG | + | chr3_1:42791252-42791271 | None:intergenic | 65.0% | |
| CTCGAGGACTCTCCGGCAGA+GGG | + | chr3_1:42791253-42791272 | None:intergenic | 65.0% | |
| ACTCGAGGACTCTCCGGCAG+AGG | + | chr3_1:42791254-42791273 | None:intergenic | 65.0% | |
| !! | GGCAGAGGGGTGCTGCCACT+CGG | + | chr3_1:42791239-42791258 | None:intergenic | 70.0% |
| GAGTGGCAGCACCCCTCTGC+CGG | - | chr3_1:42791238-42791257 | Msa0358060:CDS | 70.0% | |
| GCGCGACCACCTTGCATCGG+TGG | - | chr3_1:42792183-42792202 | Msa0358060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 42791200 | 42794414 | 42791200 | ID=Msa0358060;Name=Msa0358060 |
| chr3_1 | mRNA | 42791200 | 42794414 | 42791200 | ID=Msa0358060-mRNA-1;Parent=Msa0358060;Name=Msa0358060-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0.66|0.4|1|0.66|0.5|10|0|602 |
| chr3_1 | exon | 42794326 | 42794414 | 42794326 | ID=Msa0358060-mRNA-1:exon:7424;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42794094 | 42794319 | 42794094 | ID=Msa0358060-mRNA-1:exon:7423;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42793875 | 42793997 | 42793875 | ID=Msa0358060-mRNA-1:exon:7422;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42793343 | 42793775 | 42793343 | ID=Msa0358060-mRNA-1:exon:7421;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42792613 | 42792855 | 42792613 | ID=Msa0358060-mRNA-1:exon:7420;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42792466 | 42792515 | 42792466 | ID=Msa0358060-mRNA-1:exon:7419;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42792328 | 42792385 | 42792328 | ID=Msa0358060-mRNA-1:exon:7418;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42792066 | 42792247 | 42792066 | ID=Msa0358060-mRNA-1:exon:7417;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42791472 | 42791643 | 42791472 | ID=Msa0358060-mRNA-1:exon:7416;Parent=Msa0358060-mRNA-1 |
| chr3_1 | exon | 42791200 | 42791429 | 42791200 | ID=Msa0358060-mRNA-1:exon:7415;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42794326 | 42794414 | 42794326 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42794094 | 42794319 | 42794094 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42793875 | 42793997 | 42793875 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42793343 | 42793775 | 42793343 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42792613 | 42792855 | 42792613 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42792466 | 42792515 | 42792466 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42792328 | 42792385 | 42792328 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42792066 | 42792247 | 42792066 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42791472 | 42791643 | 42791472 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| chr3_1 | CDS | 42791200 | 42791429 | 42791200 | ID=Msa0358060-mRNA-1:cds;Parent=Msa0358060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
