AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127650 MtrunA17_Chr7g0270701 98.611 72 1 0 1 72 1 72 3.33e-46 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTAAATTGTGCCATTT+TGG 0.159770 7_3:+79261531 None:intergenic
AACTCTCACTTCCGAATTTC+CGG 0.193573 7_3:-79266928 Msa1127650:CDS
AACAGATCCGGTGATATTTC+AGG 0.234503 7_3:+79266796 None:intergenic
TACTCTGACTGTGACGTTTC+TGG 0.234667 7_3:+79266602 None:intergenic
CAGTTTCCTTTCTTCCTCTA+TGG 0.235024 7_3:+79262919 None:intergenic
TTCTATAGATCCGGTGGTTC+AGG 0.263634 7_3:-79261661 Msa1127650:three_prime_UTR
ACCGGATCTGTTAAATATAA+TGG 0.276498 7_3:-79266785 Msa1127650:CDS
CGTTTCGGCTAAGCTGAAAA+TGG 0.288717 7_3:+79267127 None:intergenic
TCTAAGCTTCTTTCGCGTTT+CGG 0.291815 7_3:+79267112 None:intergenic
CGGTTTCGTCTTTACTCTTC+CGG 0.293909 7_3:-79266908 Msa1127650:intron
TCTTGATAATCTTATTAATC+AGG 0.302774 7_3:-79266725 Msa1127650:intron
AGACAAAGACATGCTAAATA+TGG 0.324341 7_3:-79262963 Msa1127650:three_prime_UTR
TAAAGACGAAACCGGAAATT+CGG 0.355429 7_3:+79266917 None:intergenic
TATGGTAAATGATTCCAAAA+TGG 0.357567 7_3:-79261545 Msa1127650:three_prime_UTR
ACATGATAATTACATACATT+TGG 0.357990 7_3:-79260374 Msa1127650:three_prime_UTR
TGCAGGCACTGGTGGGGAGG+AGG 0.376498 7_3:-79262647 Msa1127650:intron
TCCTTTCTTCCTCTATGGCC+TGG 0.384019 7_3:+79262924 None:intergenic
GTACAAAATTACCTTCTGTT+TGG 0.386420 7_3:+79266514 None:intergenic
TACCATCTGCAGGAAATTGA+TGG 0.386920 7_3:-79263016 Msa1127650:intron
TGATGAAAGAGATTGCATTT+TGG 0.392141 7_3:-79262855 Msa1127650:three_prime_UTR
TCCATTATATTTAACAGATC+CGG 0.397333 7_3:+79266784 None:intergenic
AGAATGACTCACATTCCAAC+TGG 0.414670 7_3:-79261604 Msa1127650:three_prime_UTR
AAAATTGATTTCTATAGATC+CGG 0.417665 7_3:-79261670 Msa1127650:three_prime_UTR
GAGGCTACTGCAGCTATTGT+AGG 0.422228 7_3:-79262217 Msa1127650:three_prime_UTR
CTTTCATCAGCATCATCCTT+AGG 0.423814 7_3:+79262869 None:intergenic
TCTTCTTCTTAAAGAAGAAA+TGG 0.429187 7_3:-79260568 Msa1127650:three_prime_UTR
GCAACTTATTAATCAATTGA+AGG 0.431077 7_3:-79266537 Msa1127650:three_prime_UTR
ACACAGTACCTTGAGAGCTT+TGG 0.439461 7_3:+79260897 None:intergenic
ATCTGATATGAAGGGATTCA+AGG 0.449262 7_3:-79262452 Msa1127650:intron
CATATTGTACAGATCGGTAG+TGG 0.453978 7_3:-79260720 Msa1127650:intron
TATAGCTCAATCTGATATGA+AGG 0.454121 7_3:-79262461 Msa1127650:three_prime_UTR
CTTGAGGAAAGTTGTATGTT+CGG 0.461744 7_3:+79260679 None:intergenic
TTCCGTTGCAATTCTCCCAC+AGG 0.466385 7_3:-79262018 Msa1127650:three_prime_UTR
TGATCGACTACTATGAAGTC+TGG 0.475682 7_3:+79260849 None:intergenic
AGATGAGCGTTCTCAGCATA+TGG 0.481437 7_3:-79261563 Msa1127650:three_prime_UTR
GAAATTCGGAAGTGAGAGTT+CGG 0.492224 7_3:+79266931 None:intergenic
GCTGAAGTCATTACTTCCTA+AGG 0.497967 7_3:-79262885 Msa1127650:three_prime_UTR
GCCAGGCCATAGAGGAAGAA+AGG 0.502842 7_3:-79262925 Msa1127650:three_prime_UTR
AGTATGCTCACAACAAAGGT+TGG 0.516645 7_3:-79262501 Msa1127650:three_prime_UTR
GAATAAAGCCAAAGCTCTCA+AGG 0.523351 7_3:-79260905 Msa1127650:three_prime_UTR
GATTCTCTGCTATTAAGCAC+AGG 0.526234 7_3:-79266756 Msa1127650:CDS
AGAGTATGCAAGAGCTAACA+AGG 0.527690 7_3:-79266585 Msa1127650:exon
CAGTTCAGTGTGTGAAAGAG+AGG 0.530767 7_3:-79267032 Msa1127650:five_prime_UTR
GGCAACAGAGGAAATGAGCC+AGG 0.537076 7_3:-79262942 Msa1127650:three_prime_UTR
GGAAATGAGCCAGGCCATAG+AGG 0.537832 7_3:-79262933 Msa1127650:three_prime_UTR
ATGCTGACCACCTGAACCAC+CGG 0.538846 7_3:+79261651 None:intergenic
ACTGCAGCTATTGTAGGAGT+TGG 0.539895 7_3:-79262211 Msa1127650:three_prime_UTR
CGGAAGAGTAAAGACGAAAC+CGG 0.540382 7_3:+79266909 None:intergenic
GAGTGGAATTCATAGAGTAC+AGG 0.544385 7_3:-79262164 Msa1127650:intron
GGGAAACTAAAATTTGAGAG+TGG 0.547551 7_3:-79262181 Msa1127650:three_prime_UTR
ATCAAAGCTTCGATCAGAGC+AGG 0.548817 7_3:-79260830 Msa1127650:intron
TAATTACCTCATCAGCCTGT+GGG 0.550923 7_3:+79262003 None:intergenic
AAGAAGAAGAGCATCAATGA+AGG 0.557042 7_3:+79260581 None:intergenic
CGTGTAACTGATCATAGAGT+TGG 0.576242 7_3:-79260654 Msa1127650:three_prime_UTR
AAATATATGATTTGTACCAT+CGG 0.582486 7_3:-79260290 Msa1127650:three_prime_UTR
GTTATTCTGTTCGAGATGCT+AGG 0.583335 7_3:-79260436 Msa1127650:three_prime_UTR
AAAGATATTCATTGCAAACA+AGG 0.584561 7_3:+79262621 None:intergenic
TCAATTGAAGGCCAAACAGA+AGG 0.589477 7_3:-79266525 Msa1127650:intron
AATTGCAACGGAAACAGCAC+TGG 0.594367 7_3:+79262028 None:intergenic
TTAATTACCTCATCAGCCTG+TGG 0.596975 7_3:+79262002 None:intergenic
AACATAGACGATGTGATGCA+AGG 0.597991 7_3:-79260618 Msa1127650:three_prime_UTR
CATGCTAAATATGGCAACAG+AGG 0.599188 7_3:-79262954 Msa1127650:three_prime_UTR
TATAGATCCGGTGGTTCAGG+TGG 0.600047 7_3:-79261658 Msa1127650:three_prime_UTR
CTGTTCGAGATGCTAGGCAG+AGG 0.603453 7_3:-79260430 Msa1127650:three_prime_UTR
ATATTGTACAGATCGGTAGT+GGG 0.607392 7_3:-79260719 Msa1127650:intron
AATTCTCCCACAGGCTGATG+AGG 0.609271 7_3:-79262009 Msa1127650:intron
ATAGCAATCACGATCCCAGT+TGG 0.611104 7_3:+79261589 None:intergenic
ATTGATTTCTATAGATCCGG+TGG 0.614792 7_3:-79261667 Msa1127650:three_prime_UTR
ATAGCTCAATCTGATATGAA+GGG 0.616699 7_3:-79262460 Msa1127650:three_prime_UTR
AGCCTGTGGGAGAATTGCAA+CGG 0.624639 7_3:+79262016 None:intergenic
CAAAGGTTGGAAGTTTGATG+TGG 0.624693 7_3:-79262488 Msa1127650:three_prime_UTR
AGTGGAACCTGAAATATCAC+CGG 0.627145 7_3:-79266803 Msa1127650:CDS
GTTCTTCTACGTAAGCCAGT+GGG 0.629474 7_3:-79260527 Msa1127650:three_prime_UTR
TGATCAGTTACACGGCCTTG+AGG 0.631260 7_3:+79260663 None:intergenic
CAACTCTATGATCAGTTACA+CGG 0.632031 7_3:+79260655 None:intergenic
GAGAAGTATGCTCACAACAA+AGG 0.634109 7_3:-79262505 Msa1127650:three_prime_UTR
TGCTAGGCAGAGGAAGAGCA+TGG 0.642613 7_3:-79260420 Msa1127650:three_prime_UTR
CGAACATACAACTTTCCTCA+AGG 0.648494 7_3:-79260678 Msa1127650:three_prime_UTR
ATTCTCTGCTATTAAGCACA+GGG 0.649059 7_3:-79266755 Msa1127650:CDS
TGAGTTTGGAATGCATCCGA+TGG 0.659870 7_3:+79260274 None:intergenic
GAATGACTCACATTCCAACT+GGG 0.661685 7_3:-79261603 Msa1127650:three_prime_UTR
TATTGTACAGATCGGTAGTG+GGG 0.675160 7_3:-79260718 Msa1127650:intron
AAGGAGCTTCGAAAGCTCAG+TGG 0.714146 7_3:-79266566 Msa1127650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAATAATGATTCAA+TGG - chr7_3:79260750-79260769 Msa1127650:intron 10.0%
!! TTATTTATGTATAAATATGA+TGG + chr7_3:79263638-79263657 None:intergenic 10.0%
!! AAAAAAATAGTAAAAGAATA+AGG - chr7_3:79264356-79264375 Msa1127650:intron 10.0%
!!! ATAAATAGATTGATTCAAAT+CGG + chr7_3:79260557-79260576 None:intergenic 15.0%
!! TTCTTTATGTATAAATATGA+TGG + chr7_3:79261368-79261387 None:intergenic 15.0%
!!! TATCTTTTTATGTTATTGTT+AGG + chr7_3:79261476-79261495 None:intergenic 15.0%
!!! GATAATAGATTCTAAAAATT+AGG - chr7_3:79261492-79261511 Msa1127650:intron 15.0%
!!! AAAAGGTTTTGATTAATTTT+AGG - chr7_3:79262318-79262337 Msa1127650:intron 15.0%
!!! TATCTTTTTATGTTATTGTT+AGG + chr7_3:79261476-79261495 None:intergenic 15.0%
!!! GATTTATTTACTATGTATTT+TGG - chr7_3:79264132-79264151 Msa1127650:intron 15.0%
!!! AAACTTTAGAAGTTAAATTT+AGG - chr7_3:79264196-79264215 Msa1127650:intron 15.0%
!! TTGTATAAACAAATGAAAAT+GGG + chr7_3:79264762-79264781 None:intergenic 15.0%
!! ATTGTATAAACAAATGAAAA+TGG + chr7_3:79264763-79264782 None:intergenic 15.0%
!! AAGTAATAGACAAAAAAAAA+CGG + chr7_3:79265162-79265181 None:intergenic 15.0%
!!! TCTTTATATTATCACTATTT+TGG + chr7_3:79265548-79265567 None:intergenic 15.0%
!! GTAAAAAAAATGAGGATTAA+TGG - chr7_3:79260422-79260441 Msa1127650:three_prime_UTR 20.0%
!!! AATAATTTTGATAACAGAAG+TGG - chr7_3:79260611-79260630 Msa1127650:three_prime_UTR 20.0%
!!! TCTTGATAATCTTATTAATC+AGG - chr7_3:79260707-79260726 Msa1127650:three_prime_UTR 20.0%
!!! GTTTCTTTATGCATTATTTT+AGG + chr7_3:79261394-79261413 None:intergenic 20.0%
!! AAACTAAATGCCTAAAAAAT+TGG - chr7_3:79261424-79261443 Msa1127650:intron 20.0%
!!! CTATTTGTTACCAATTTTTT+AGG + chr7_3:79261437-79261456 None:intergenic 20.0%
!!! GGTTATTTTTTTTTGTAGTA+TGG - chr7_3:79262709-79262728 Msa1127650:intron 20.0%
!! AAATAGTGTTTAAGCATTTA+TGG - chr7_3:79263474-79263493 Msa1127650:intron 20.0%
!!! GTTTCTTTATGCATTATTTT+AGG + chr7_3:79261394-79261413 None:intergenic 20.0%
!! AAACTAAATGCCTAAAAAAT+TGG - chr7_3:79261424-79261443 Msa1127650:intron 20.0%
!!! CTATTTGTTACCAATTTTTT+AGG + chr7_3:79261437-79261456 None:intergenic 20.0%
!! GATAATAGATCCTAAAATTT+AGG - chr7_3:79263762-79263781 Msa1127650:intron 20.0%
!!! GTTTTAAGTTCCTAAATTTT+AGG + chr7_3:79263775-79263794 None:intergenic 20.0%
!! AAATTTATCCTTCATATAAG+CGG - chr7_3:79263849-79263868 Msa1127650:intron 20.0%
!! TTTGTTAAACATATATGCTT+AGG + chr7_3:79263927-79263946 None:intergenic 20.0%
!! ACATAGTAAATAAATCACAT+AGG + chr7_3:79264128-79264147 None:intergenic 20.0%
!!! ATTTGTTTATACAATTTTGC+AGG - chr7_3:79264768-79264787 Msa1127650:intron 20.0%
!!! ATGAATATCTTTAAGATGTA+AGG - chr7_3:79264822-79264841 Msa1127650:intron 20.0%
!!! TCTATTACTTGATGTATTTT+TGG - chr7_3:79265172-79265191 Msa1127650:intron 20.0%
!! GTAATTAATAAATACCCTTA+TGG - chr7_3:79265445-79265464 Msa1127650:intron 20.0%
!! TGAATCTTATATTATGTTCA+TGG - chr7_3:79265698-79265717 Msa1127650:intron 20.0%
!!! AAAATTGATTTCTATAGATC+CGG - chr7_3:79265762-79265781 Msa1127650:intron 20.0%
!! AATAAGAGAAATATAGAACA+GGG + chr7_3:79266456-79266475 None:intergenic 20.0%
!! AAATAAGAGAAATATAGAAC+AGG + chr7_3:79266457-79266476 None:intergenic 20.0%
!! ACATGATAATTACATACATT+TGG - chr7_3:79267058-79267077 Msa1127650:five_prime_UTR 20.0%
!!! AAATATATGATTTGTACCAT+CGG - chr7_3:79267142-79267161 Msa1127650:five_prime_UTR 20.0%
! AAAGAGAGGTAAAAAAAATG+AGG - chr7_3:79260414-79260433 Msa1127650:three_prime_UTR 25.0%
! TCCATTATATTTAACAGATC+CGG + chr7_3:79260651-79260670 None:intergenic 25.0%
! GCAACTTATTAATCAATTGA+AGG - chr7_3:79260895-79260914 Msa1127650:three_prime_UTR 25.0%
!! TTGACTGTAATTACATGTTT+TGG - chr7_3:79261013-79261032 Msa1127650:intron 25.0%
! ATGATATTAAGCTAATGCTT+TGG - chr7_3:79261173-79261192 Msa1127650:intron 25.0%
!!! TGACTATCTTATTTTGGTAA+AGG - chr7_3:79261202-79261221 Msa1127650:intron 25.0%
!!! GACTATCTTATTTTGGTAAA+GGG - chr7_3:79261203-79261222 Msa1127650:intron 25.0%
!! TTAAGATTGTAAGTATTGTG+TGG - chr7_3:79261259-79261278 Msa1127650:intron 25.0%
! AAAACTGCTAATAACGTTAT+TGG - chr7_3:79261921-79261940 Msa1127650:intron 25.0%
! ATATGGGAACAAATGAATAA+AGG + chr7_3:79261952-79261971 None:intergenic 25.0%
! TTTATTCATTTGTTCCCATA+TGG - chr7_3:79261951-79261970 Msa1127650:intron 25.0%
!! AAATTAGTTTCAAACCTGAA+AGG - chr7_3:79262358-79262377 Msa1127650:intron 25.0%
!!! TTTTTTTTTGTAGTATGGAC+AGG - chr7_3:79262714-79262733 Msa1127650:intron 25.0%
!!! TTTTTTTTGTAGTATGGACA+GGG - chr7_3:79262715-79262734 Msa1127650:intron 25.0%
! AAATTAAAGAACTACAATGG+TGG + chr7_3:79262787-79262806 None:intergenic 25.0%
! GCTAAATTAAAGAACTACAA+TGG + chr7_3:79262790-79262809 None:intergenic 25.0%
! AAGAACAAAGAAGAATGATA+AGG + chr7_3:79262843-79262862 None:intergenic 25.0%
! TTATCATTCTTCTTTGTTCT+TGG - chr7_3:79262842-79262861 Msa1127650:intron 25.0%
! TATCATTCTTCTTTGTTCTT+GGG - chr7_3:79262843-79262862 Msa1127650:three_prime_UTR 25.0%
! TGAAGAAGATGAAAGAATTA+GGG + chr7_3:79263127-79263146 None:intergenic 25.0%
! ATGAAGAAGATGAAAGAATT+AGG + chr7_3:79263128-79263147 None:intergenic 25.0%
!! TCAAATCAGCATTTGAAATA+TGG + chr7_3:79263170-79263189 None:intergenic 25.0%
!!! TATTTCAAATGCTGATTTGA+TGG - chr7_3:79263170-79263189 Msa1127650:intron 25.0%
! AGATAAAAAATCACAAGGAA+AGG + chr7_3:79263269-79263288 None:intergenic 25.0%
! TGGTGAAAACTATCATATAT+GGG + chr7_3:79263391-79263410 None:intergenic 25.0%
! ATGGTGAAAACTATCATATA+TGG + chr7_3:79263392-79263411 None:intergenic 25.0%
!! TTTTCAATTCATCAAACAGA+TGG + chr7_3:79263457-79263476 None:intergenic 25.0%
! AATTTATCCTTCATATAAGC+GGG - chr7_3:79263850-79263869 Msa1127650:intron 25.0%
!!! AGTTCTAGAAATAAGATTGA+AGG - chr7_3:79264155-79264174 Msa1127650:intron 25.0%
!! ATTGAAGGTGTACATAATAT+TGG - chr7_3:79264170-79264189 Msa1127650:intron 25.0%
! GAAGTTAAATTTAGGCAATT+AGG - chr7_3:79264204-79264223 Msa1127650:intron 25.0%
! TAAATTATCACTGTTGAAGA+TGG - chr7_3:79264613-79264632 Msa1127650:intron 25.0%
!! TGGGAATAAAAAAAAGTGTA+GGG + chr7_3:79264743-79264762 None:intergenic 25.0%
!! ATGGGAATAAAAAAAAGTGT+AGG + chr7_3:79264744-79264763 None:intergenic 25.0%
! AAAGATATTCATTGCAAACA+AGG + chr7_3:79264814-79264833 None:intergenic 25.0%
! TAAGGTTACACTTTATACTT+GGG - chr7_3:79264840-79264859 Msa1127650:intron 25.0%
! ACAATGGTAAACACTATAAA+CGG + chr7_3:79265111-79265130 None:intergenic 25.0%
!!! TACTTGATGTATTTTTGGTT+TGG - chr7_3:79265177-79265196 Msa1127650:intron 25.0%
! CATTCAAATTTCATATCACA+AGG + chr7_3:79265478-79265497 None:intergenic 25.0%
! GATTGTAAAAGATATTGAAC+AGG + chr7_3:79265658-79265677 None:intergenic 25.0%
! TATGGTAAATGATTCCAAAA+TGG - chr7_3:79265887-79265906 Msa1127650:intron 25.0%
!! ACTAACTCCATAAACATTTT+CGG - chr7_3:79265995-79266014 Msa1127650:intron 25.0%
! TAATGACATGAACTTACTAA+TGG - chr7_3:79266163-79266182 Msa1127650:intron 25.0%
! CTTAATGGAAAATAACCTAA+CGG + chr7_3:79266331-79266350 None:intergenic 25.0%
! AAGTTTCATATTGTACAGAT+CGG - chr7_3:79266706-79266725 Msa1127650:intron 25.0%
! TCTTCTTCTTAAAGAAGAAA+TGG - chr7_3:79266864-79266883 Msa1127650:intron 25.0%
ACCGGATCTGTTAAATATAA+TGG - chr7_3:79260647-79260666 Msa1127650:three_prime_UTR 30.0%
GTACAAAATTACCTTCTGTT+TGG + chr7_3:79260921-79260940 None:intergenic 30.0%
!! CTACACTGACTATCTTATTT+TGG - chr7_3:79261196-79261215 Msa1127650:intron 30.0%
TTGTGAGAAGTTTGAATTTC+AGG + chr7_3:79261719-79261738 None:intergenic 30.0%
AATTTCTTGAGTCAGATAGT+TGG + chr7_3:79261753-79261772 None:intergenic 30.0%
!! ACAATTACTTTGTTGCTTTG+TGG - chr7_3:79261787-79261806 Msa1127650:intron 30.0%
CTATAGCCTACAAAAATTTC+AGG - chr7_3:79261835-79261854 Msa1127650:intron 30.0%
!! CTTTCTTCTTGATTTGTTCA+AGG - chr7_3:79261863-79261882 Msa1127650:intron 30.0%
ATGGTCAATGTTCAAATGAA+AGG + chr7_3:79262213-79262232 None:intergenic 30.0%
AGATGCAAACAACATAGAAA+TGG + chr7_3:79262232-79262251 None:intergenic 30.0%
TCCAAAGTCAGAATTGAAAA+TGG + chr7_3:79262429-79262448 None:intergenic 30.0%
! ATTTGAGATGCAAAAGATGA+AGG + chr7_3:79263076-79263095 None:intergenic 30.0%
AAGAAGATGAAAGAATTAGG+GGG + chr7_3:79263125-79263144 None:intergenic 30.0%
GAAGAAGATGAAAGAATTAG+GGG + chr7_3:79263126-79263145 None:intergenic 30.0%
! CTTCTTCATATTCAGTTTTG+AGG - chr7_3:79263139-79263158 Msa1127650:intron 30.0%
! TGATTTGATGGTCATAATTC+TGG - chr7_3:79263182-79263201 Msa1127650:intron 30.0%
AACAAGAAAGTCAAAAGCAA+GGG + chr7_3:79263244-79263263 None:intergenic 30.0%
AAACAAGAAAGTCAAAAGCA+AGG + chr7_3:79263245-79263264 None:intergenic 30.0%
!!! TTTTTTATCTGAGCCATTGT+TGG - chr7_3:79263279-79263298 Msa1127650:intron 30.0%
TAGTGTTTAAGCATTTATGG+TGG - chr7_3:79263477-79263496 Msa1127650:intron 30.0%
AGTGTTTAAGCATTTATGGT+GGG - chr7_3:79263478-79263497 Msa1127650:intron 30.0%
CCTTTCTATATCCAACAAAT+TGG + chr7_3:79263552-79263571 None:intergenic 30.0%
!! CCAATTTGTTGGATATAGAA+AGG - chr7_3:79263549-79263568 Msa1127650:intron 30.0%
ATTTATCCTTCATATAAGCG+GGG - chr7_3:79263851-79263870 Msa1127650:intron 30.0%
AAAGACAGAAAAAAATGCCA+TGG + chr7_3:79264079-79264098 None:intergenic 30.0%
!!! TGGCATTTTTTTCTGTCTTT+TGG - chr7_3:79264079-79264098 Msa1127650:intron 30.0%
!!! CATTTTTTTCTGTCTTTTGG+TGG - chr7_3:79264082-79264101 Msa1127650:intron 30.0%
TAGTAAAAGAATAAGGCTGT+CGG - chr7_3:79264363-79264382 Msa1127650:intron 30.0%
AGACAAAGACATGCTAAATA+TGG - chr7_3:79264469-79264488 Msa1127650:intron 30.0%
! TGATGAAAGAGATTGCATTT+TGG - chr7_3:79264577-79264596 Msa1127650:intron 30.0%
AAAAAAGCAAAACGATCAAC+AGG + chr7_3:79264702-79264721 None:intergenic 30.0%
GTAAGGTTACACTTTATACT+TGG - chr7_3:79264839-79264858 Msa1127650:intron 30.0%
TATAGCTCAATCTGATATGA+AGG - chr7_3:79264971-79264990 Msa1127650:intron 30.0%
ATAGCTCAATCTGATATGAA+GGG - chr7_3:79264972-79264991 Msa1127650:intron 30.0%
GATAGAAGTTGCATTTGTAT+GGG + chr7_3:79265582-79265601 None:intergenic 30.0%
AGATAGAAGTTGCATTTGTA+TGG + chr7_3:79265583-79265602 None:intergenic 30.0%
!!! ACATGTAAATTGTGCCATTT+TGG + chr7_3:79265904-79265923 None:intergenic 30.0%
AATGTTTATGGAGTTAGTTG+TGG + chr7_3:79265993-79266012 None:intergenic 30.0%
TGACACATGGTTATTACTAA+TGG - chr7_3:79266105-79266124 Msa1127650:intron 30.0%
GACACATGGTTATTACTAAT+GGG - chr7_3:79266106-79266125 Msa1127650:intron 30.0%
CTGAAACAACATATGCTTAA+TGG + chr7_3:79266346-79266365 None:intergenic 30.0%
CAAAATAATAAAGTCATCGC+AGG + chr7_3:79266429-79266448 None:intergenic 30.0%
! CTGCGATGACTTTATTATTT+TGG - chr7_3:79266427-79266446 Msa1127650:intron 30.0%
AAGAAAAGAAGGGGAAAAAA+AGG + chr7_3:79266674-79266693 None:intergenic 30.0%
! TTTTTCCCCTTCTTTTCTTT+TGG - chr7_3:79266675-79266694 Msa1127650:intron 30.0%
TCAATCCAAAAGAAAAGAAG+GGG + chr7_3:79266683-79266702 None:intergenic 30.0%
GTCAATCCAAAAGAAAAGAA+GGG + chr7_3:79266684-79266703 None:intergenic 30.0%
AGTCAATCCAAAAGAAAAGA+AGG + chr7_3:79266685-79266704 None:intergenic 30.0%
TCAACAAAAATCTTCGACTG+AGG + chr7_3:79260367-79260386 None:intergenic 35.0%
TAAAGACGAAACCGGAAATT+CGG + chr7_3:79260518-79260537 None:intergenic 35.0%
GATTCAAATCGGAAAGTTAC+CGG + chr7_3:79260546-79260565 None:intergenic 35.0%
ATTCTCTGCTATTAAGCACA+GGG - chr7_3:79260677-79260696 Msa1127650:three_prime_UTR 35.0%
AAAATGTCGTGTAAGTGTCT+TGG - chr7_3:79261104-79261123 Msa1127650:intron 35.0%
AAATGTCGTGTAAGTGTCTT+GGG - chr7_3:79261105-79261124 Msa1127650:intron 35.0%
CTAAGCTATGTCTTTGTCTT+CGG - chr7_3:79261147-79261166 Msa1127650:intron 35.0%
!! TAAGTATTGTGTGGCTTTGT+TGG - chr7_3:79261268-79261287 Msa1127650:intron 35.0%
!! TGGCTTTGTTGGATATAGAA+AGG - chr7_3:79261279-79261298 Msa1127650:intron 35.0%
GGATATAGAAAGGTTTAACG+TGG - chr7_3:79261289-79261308 Msa1127650:intron 35.0%
TGTTATGTGAACAGCATGAA+AGG - chr7_3:79261321-79261340 Msa1127650:intron 35.0%
TAACAAATAGAGCATACCAG+AGG - chr7_3:79261447-79261466 Msa1127650:intron 35.0%
AACAAATAGAGCATACCAGA+GGG - chr7_3:79261448-79261467 Msa1127650:intron 35.0%
GATATGCAGTTTCAGATTCA+AGG + chr7_3:79261560-79261579 None:intergenic 35.0%
CACTTTCAGACATCTATCAA+AGG + chr7_3:79261651-79261670 None:intergenic 35.0%
TGAGAAGTTTGAATTTCAGG+AGG + chr7_3:79261716-79261735 None:intergenic 35.0%
TGAGTCAGATAGTTGGAATT+GGG + chr7_3:79261746-79261765 None:intergenic 35.0%
TTGAGTCAGATAGTTGGAAT+TGG + chr7_3:79261747-79261766 None:intergenic 35.0%
! GCAGAACCTGAAATTTTTGT+AGG + chr7_3:79261844-79261863 None:intergenic 35.0%
! ACTTCAGTAACATCCTGTTT+TGG - chr7_3:79261991-79262010 Msa1127650:intron 35.0%
! GTTTCCATTGATTGTATCGA+TGG - chr7_3:79262059-79262078 Msa1127650:three_prime_UTR 35.0%
AGTTCCATCGATACAATCAA+TGG + chr7_3:79262066-79262085 None:intergenic 35.0%
TTCCTCATTCATCAAATCCA+AGG - chr7_3:79262176-79262195 Msa1127650:three_prime_UTR 35.0%
!! TGGTTATAAGGTGTTGTTTG+AGG + chr7_3:79262274-79262293 None:intergenic 35.0%
ACTGCTAGAGAATGGTTATA+AGG + chr7_3:79262286-79262305 None:intergenic 35.0%
CTTATCGAAGTAAAAGGCAA+GGG + chr7_3:79262402-79262421 None:intergenic 35.0%
ACTTATCGAAGTAAAAGGCA+AGG + chr7_3:79262403-79262422 None:intergenic 35.0%
!! GCCATTTTCAATTCTGACTT+TGG - chr7_3:79262425-79262444 Msa1127650:intron 35.0%
TCGTGAGCTCTTTAATAATC+TGG + chr7_3:79262466-79262485 None:intergenic 35.0%
TATCTATAAGCCAACTCTCT+CGG - chr7_3:79262514-79262533 Msa1127650:intron 35.0%
ACATGTGGAAAGAATATGCA+AGG + chr7_3:79262628-79262647 None:intergenic 35.0%
! TAAAGAACTACAATGGTGGA+AGG + chr7_3:79262783-79262802 None:intergenic 35.0%
AGAAGAATGATAAGGTCTGA+AGG + chr7_3:79262835-79262854 None:intergenic 35.0%
TAGTTGCTTCGAATCTTTCA+AGG - chr7_3:79262935-79262954 Msa1127650:three_prime_UTR 35.0%
GCTAACAAAGTAAGATTGCT+TGG + chr7_3:79263009-79263028 None:intergenic 35.0%
GGCTCAGATAAAAAATCACA+AGG + chr7_3:79263274-79263293 None:intergenic 35.0%
TTTGTCAGACAATCCAACAA+TGG + chr7_3:79263295-79263314 None:intergenic 35.0%
ATTGTTGGATTGTCTGACAA+AGG - chr7_3:79263294-79263313 Msa1127650:intron 35.0%
! TAGTTTTCACCATCAAACAC+AGG - chr7_3:79263399-79263418 Msa1127650:intron 35.0%
! ATCAAACACAGGTAATGGTA+GGG - chr7_3:79263410-79263429 Msa1127650:intron 35.0%
GGATATAGAAAGGTTTAACG+TGG - chr7_3:79261289-79261308 Msa1127650:intron 35.0%
TGTTATGTGAACAGCATGAA+AGG - chr7_3:79261321-79261340 Msa1127650:intron 35.0%
TTTATCCTTCATATAAGCGG+GGG - chr7_3:79263852-79263871 Msa1127650:intron 35.0%
CCATGTCATGAACTAAATCT+TGG + chr7_3:79263990-79264009 None:intergenic 35.0%
! CCAAGATTTAGTTCATGACA+TGG - chr7_3:79263987-79264006 Msa1127650:intron 35.0%
AATTTAGGCAATTAGGCTGT+CGG - chr7_3:79264211-79264230 Msa1127650:intron 35.0%
CTTACAATGCCGAAATTGTT+AGG - chr7_3:79264249-79264268 Msa1127650:intron 35.0%
!!! TTTTTTGTCTGTAGACGAAG+TGG + chr7_3:79264341-79264360 None:intergenic 35.0%
AGTAAAAGAATAAGGCTGTC+GGG - chr7_3:79264364-79264383 Msa1127650:intron 35.0%
TCTTGAATATCACGTGATAC+AGG - chr7_3:79264389-79264408 Msa1127650:intron 35.0%
! TGAAAGAGATTGCATTTTGG+AGG - chr7_3:79264580-79264599 Msa1127650:intron 35.0%
AATTTCTGTCAGCTTGTCTT+AGG - chr7_3:79264675-79264694 Msa1127650:intron 35.0%
! TTATACAATTTTGCAGGCAC+TGG - chr7_3:79264774-79264793 Msa1127650:intron 35.0%
GATACTATCTTGCCAAATGT+AGG - chr7_3:79264901-79264920 Msa1127650:intron 35.0%
ATACTTCTCGTACCTACATT+TGG + chr7_3:79264916-79264935 None:intergenic 35.0%
ATCTGATATGAAGGGATTCA+AGG - chr7_3:79264980-79264999 Msa1127650:intron 35.0%
!! ATGACCTGTTTTTCAGTATG+TGG - chr7_3:79265026-79265045 Msa1127650:intron 35.0%
TGGTAAACACTATAAACGGA+AGG + chr7_3:79265107-79265126 None:intergenic 35.0%
CAAACGGAAGGAAAAAACAA+TGG + chr7_3:79265127-79265146 None:intergenic 35.0%
!!! ATTGTAGGAGTTGGTGTTTT+TGG - chr7_3:79265230-79265249 Msa1127650:intron 35.0%
!!! TTGTAGGAGTTGGTGTTTTT+GGG - chr7_3:79265231-79265250 Msa1127650:intron 35.0%
GGGAAACTAAAATTTGAGAG+TGG - chr7_3:79265251-79265270 Msa1127650:intron 35.0%
ATTCGTAGATTTGATGTGAG+AGG + chr7_3:79265306-79265325 None:intergenic 35.0%
! ATGAACACGTCCCAATTTTT+CGG + chr7_3:79265383-79265402 None:intergenic 35.0%
ATGCAACTTCTATCTTTCTG+TGG - chr7_3:79265588-79265607 Msa1127650:intron 35.0%
TATCTTTCTGTGGTTTCCTT+TGG - chr7_3:79265598-79265617 Msa1127650:intron 35.0%
TGATGAATGGAATTGCAAAG+AGG - chr7_3:79265632-79265651 Msa1127650:intron 35.0%
GGTTGACGTTCAGTTAAAAA+AGG - chr7_3:79265731-79265750 Msa1127650:intron 35.0%
! ATTGATTTCTATAGATCCGG+TGG - chr7_3:79265765-79265784 Msa1127650:intron 35.0%
TTGTAGCACTACTAATAACG+TGG + chr7_3:79266026-79266045 None:intergenic 35.0%
GACATGAACTTACTAATGGA+AGG - chr7_3:79266167-79266186 Msa1127650:intron 35.0%
GATTTGTGTTCATTCATGTG+TGG - chr7_3:79266232-79266251 Msa1127650:intron 35.0%
!!! CACAGAATTTTGAGGCTAAA+TGG + chr7_3:79266266-79266285 None:intergenic 35.0%
AAAATTCTGTGTACACGGAT+AGG - chr7_3:79266275-79266294 Msa1127650:intron 35.0%
AAATGCCTCTTGCAATATCT+TGG + chr7_3:79266373-79266392 None:intergenic 35.0%
AGGCATTTGACATAGTTGAT+GGG - chr7_3:79266385-79266404 Msa1127650:intron 35.0%
AGCAGAAATTTGAAAGCAGA+GGG + chr7_3:79266505-79266524 None:intergenic 35.0%
ATATTGTACAGATCGGTAGT+GGG - chr7_3:79266713-79266732 Msa1127650:intron 35.0%
CTTGAGGAAAGTTGTATGTT+CGG + chr7_3:79266756-79266775 None:intergenic 35.0%
CAACTCTATGATCAGTTACA+CGG + chr7_3:79266780-79266799 None:intergenic 35.0%
!! AAGAAGAAGAGCATCAATGA+AGG + chr7_3:79266854-79266873 None:intergenic 35.0%
TAAGCAAAAATTTGACCCAC+TGG + chr7_3:79266923-79266942 None:intergenic 35.0%
TCTAAGCTTCTTTCGCGTTT+CGG + chr7_3:79260323-79260342 None:intergenic 40.0%
!!! TCCGTTATCTTTTTCAGCTG+CGG - chr7_3:79260459-79260478 Msa1127650:three_prime_UTR 40.0%
TCCGCAGCTGAAAAAGATAA+CGG + chr7_3:79260463-79260482 None:intergenic 40.0%
GAAATTCGGAAGTGAGAGTT+CGG + chr7_3:79260504-79260523 None:intergenic 40.0%
AACTCTCACTTCCGAATTTC+CGG - chr7_3:79260504-79260523 Msa1127650:three_prime_UTR 40.0%
AGTGGAACCTGAAATATCAC+CGG - chr7_3:79260629-79260648 Msa1127650:three_prime_UTR 40.0%
AACAGATCCGGTGATATTTC+AGG + chr7_3:79260639-79260658 None:intergenic 40.0%
GATTCTCTGCTATTAAGCAC+AGG - chr7_3:79260676-79260695 Msa1127650:three_prime_UTR 40.0%
AGAGTATGCAAGAGCTAACA+AGG - chr7_3:79260847-79260866 Msa1127650:three_prime_UTR 40.0%
TCAATTGAAGGCCAAACAGA+AGG - chr7_3:79260907-79260926 Msa1127650:three_prime_UTR 40.0%
GCATAGACACTTCTAATCGA+AGG + chr7_3:79261080-79261099 None:intergenic 40.0%
TGTTATTGTTAGGAACCCTC+TGG + chr7_3:79261466-79261485 None:intergenic 40.0%
ATGCAGTTTCAGATTCAAGG+AGG + chr7_3:79261557-79261576 None:intergenic 40.0%
!! CTAGCTTTGTCATATCCTTC+TGG - chr7_3:79261604-79261623 Msa1127650:three_prime_UTR 40.0%
! AGTGATCTAGTTCCTCTAAC+AGG - chr7_3:79261667-79261686 Msa1127650:three_prime_UTR 40.0%
!! GTTGATGATGAACCTGTTAG+AGG + chr7_3:79261682-79261701 None:intergenic 40.0%
GCATCCACAGCAGAATATTT+AGG - chr7_3:79261889-79261908 Msa1127650:intron 40.0%
CAAGCCTAAATATTCTGCTG+TGG + chr7_3:79261896-79261915 None:intergenic 40.0%
!! AGCACAAGTTGATGCCATAT+GGG + chr7_3:79261968-79261987 None:intergenic 40.0%
!! AAGCACAAGTTGATGCCATA+TGG + chr7_3:79261969-79261988 None:intergenic 40.0%
!!! TAACATCCTGTTTTGGTTCC+AGG - chr7_3:79261998-79262017 Msa1127650:intron 40.0%
! TGTCAAAGAACTTGTTCCAG+GGG + chr7_3:79262028-79262047 None:intergenic 40.0%
! CTGTCAAAGAACTTGTTCCA+GGG + chr7_3:79262029-79262048 None:intergenic 40.0%
! TCTGTCAAAGAACTTGTTCC+AGG + chr7_3:79262030-79262049 None:intergenic 40.0%
ACAACATGCTGTTGTACACA+AGG + chr7_3:79262157-79262176 None:intergenic 40.0%
TGCCTTGGATTTGATGAATG+AGG + chr7_3:79262181-79262200 None:intergenic 40.0%
GTTACTCAACTGCTAGAGAA+TGG + chr7_3:79262294-79262313 None:intergenic 40.0%
GCAGTTGAGTAACACTCAAA+AGG - chr7_3:79262301-79262320 Msa1127650:intron 40.0%
GTTGCAATTGAAAGCCTTTC+AGG + chr7_3:79262375-79262394 None:intergenic 40.0%
! GAGAGTTGGCTTATAGATAG+TGG + chr7_3:79262513-79262532 None:intergenic 40.0%
ATCTATAAGCCAACTCTCTC+GGG - chr7_3:79262515-79262534 Msa1127650:intron 40.0%
TGCTGAAGATCAAACTTTGG+AGG + chr7_3:79262580-79262599 None:intergenic 40.0%
ATATGCAAGGCTCAACATCA+GGG + chr7_3:79262615-79262634 None:intergenic 40.0%
AATATGCAAGGCTCAACATC+AGG + chr7_3:79262616-79262635 None:intergenic 40.0%
! TGTCACAAGTGTTGTCAGTT+AGG + chr7_3:79262651-79262670 None:intergenic 40.0%
! CACTTGTGACATTTTACGTC+TGG - chr7_3:79262660-79262679 Msa1127650:intron 40.0%
AGAGCTTGTAAATGCTATGC+AGG + chr7_3:79262869-79262888 None:intergenic 40.0%
AGCATTTACAAGCTCTGTCA+CGG - chr7_3:79262873-79262892 Msa1127650:three_prime_UTR 40.0%
! GGTAAGCTTTAACATGTCCT+TGG - chr7_3:79262894-79262913 Msa1127650:three_prime_UTR 40.0%
! CATGTCCTTGGTATTTTCCA+AGG - chr7_3:79262906-79262925 Msa1127650:three_prime_UTR 40.0%
CACTTCCTTGGAAAATACCA+AGG + chr7_3:79262914-79262933 None:intergenic 40.0%
TTTAGAGGCAAATGACCTCT+GGG + chr7_3:79263349-79263368 None:intergenic 40.0%
ATTTAGAGGCAAATGACCTC+TGG + chr7_3:79263350-79263369 None:intergenic 40.0%
ACTATCATATATGGGCAGCA+AGG + chr7_3:79263383-79263402 None:intergenic 40.0%
TCACCATCAAACACAGGTAA+TGG - chr7_3:79263405-79263424 Msa1127650:intron 40.0%
CTACCATTACCTGTGTTTGA+TGG + chr7_3:79263411-79263430 None:intergenic 40.0%
! CATCAAACACAGGTAATGGT+AGG - chr7_3:79263409-79263428 Msa1127650:intron 40.0%
!! GGCTCTAGATACCAATTTGT+TGG - chr7_3:79263538-79263557 Msa1127650:intron 40.0%
TTCATAGTCATCCAGTCAAC+AGG - chr7_3:79261531-79261550 Msa1127650:intron 40.0%
CTAAACTTAAGCCTGTTGAC+TGG + chr7_3:79263815-79263834 None:intergenic 40.0%
TTATCCTTCATATAAGCGGG+GGG - chr7_3:79263853-79263872 Msa1127650:intron 40.0%
CAACTCCACTTTGTTGAAAC+AGG - chr7_3:79264038-79264057 Msa1127650:intron 40.0%
AACAGCCTGTTTCAACAAAG+TGG + chr7_3:79264046-79264065 None:intergenic 40.0%
!! GGCTGTTGTTATTTCTTCCA+TGG - chr7_3:79264059-79264078 Msa1127650:intron 40.0%
CAATGCCGAAATTGTTAGGT+TGG - chr7_3:79264253-79264272 Msa1127650:intron 40.0%
! TACAGGTTTTTACCATCTGC+AGG - chr7_3:79264406-79264425 Msa1127650:intron 40.0%
TACCATCTGCAGGAAATTGA+TGG - chr7_3:79264416-79264435 Msa1127650:intron 40.0%
CATGCTAAATATGGCAACAG+AGG - chr7_3:79264478-79264497 Msa1127650:intron 40.0%
CAGTTTCCTTTCTTCCTCTA+TGG + chr7_3:79264516-79264535 None:intergenic 40.0%
GCTGAAGTCATTACTTCCTA+AGG - chr7_3:79264547-79264566 Msa1127650:intron 40.0%
CTTTCATCAGCATCATCCTT+AGG + chr7_3:79264566-79264585 None:intergenic 40.0%
! GAGAAGTATGCTCACAACAA+AGG - chr7_3:79264927-79264946 Msa1127650:intron 40.0%
AGTATGCTCACAACAAAGGT+TGG - chr7_3:79264931-79264950 Msa1127650:intron 40.0%
CAAAGGTTGGAAGTTTGATG+TGG - chr7_3:79264944-79264963 Msa1127650:intron 40.0%
ACAGCCACATACTGAAAAAC+AGG + chr7_3:79265033-79265052 None:intergenic 40.0%
GAGTGGAATTCATAGAGTAC+AGG - chr7_3:79265268-79265287 Msa1127650:intron 40.0%
TAATTACCTCATCAGCCTGT+GGG + chr7_3:79265432-79265451 None:intergenic 40.0%
TTAATTACCTCATCAGCCTG+TGG + chr7_3:79265433-79265452 None:intergenic 40.0%
!! CACAAGGCATTGTTCCATAA+GGG + chr7_3:79265462-79265481 None:intergenic 40.0%
!! TCACAAGGCATTGTTCCATA+AGG + chr7_3:79265463-79265482 None:intergenic 40.0%
TATGTTCATGGCCCATTTGT+AGG - chr7_3:79265710-79265729 Msa1127650:intron 40.0%
CTGAACGTCAACCTACAAAT+GGG + chr7_3:79265724-79265743 None:intergenic 40.0%
ACTGAACGTCAACCTACAAA+TGG + chr7_3:79265725-79265744 None:intergenic 40.0%
AGAATGACTCACATTCCAAC+TGG - chr7_3:79265828-79265847 Msa1127650:intron 40.0%
GAATGACTCACATTCCAACT+GGG - chr7_3:79265829-79265848 Msa1127650:intron 40.0%
GGAGATGCCGAAAATGTTTA+TGG + chr7_3:79266005-79266024 None:intergenic 40.0%
CACACACTTAAAGTGACACA+TGG - chr7_3:79266092-79266111 Msa1127650:intron 40.0%
TGAACTTACTAATGGAAGGC+AGG - chr7_3:79266171-79266190 Msa1127650:intron 40.0%
GTACTACTCTTCATGCACAT+TGG - chr7_3:79266210-79266229 Msa1127650:intron 40.0%
GCCTCAAAATTCTGTGTACA+CGG - chr7_3:79266270-79266289 Msa1127650:intron 40.0%
! TCCGTGTACACAGAATTTTG+AGG + chr7_3:79266274-79266293 None:intergenic 40.0%
GACGTGAATCATTTACCGTT+AGG - chr7_3:79266313-79266332 Msa1127650:intron 40.0%
GTTGTCCAAGATATTGCAAG+AGG - chr7_3:79266365-79266384 Msa1127650:intron 40.0%
! GAGGCATTTGACATAGTTGA+TGG - chr7_3:79266384-79266403 Msa1127650:intron 40.0%
! GGCATTTGACATAGTTGATG+GGG - chr7_3:79266386-79266405 Msa1127650:intron 40.0%
!! GCATTTGACATAGTTGATGG+GGG - chr7_3:79266387-79266406 Msa1127650:intron 40.0%
GAGCAGAAATTTGAAAGCAG+AGG + chr7_3:79266506-79266525 None:intergenic 40.0%
GAATAAAGCCAAAGCTCTCA+AGG - chr7_3:79266527-79266546 Msa1127650:three_prime_UTR 40.0%
TGATCGACTACTATGAAGTC+TGG + chr7_3:79266586-79266605 None:intergenic 40.0%
CATATTGTACAGATCGGTAG+TGG - chr7_3:79266712-79266731 Msa1127650:intron 40.0%
TATTGTACAGATCGGTAGTG+GGG - chr7_3:79266714-79266733 Msa1127650:intron 40.0%
CGAACATACAACTTTCCTCA+AGG - chr7_3:79266754-79266773 Msa1127650:CDS 40.0%
CGTGTAACTGATCATAGAGT+TGG - chr7_3:79266778-79266797 Msa1127650:CDS 40.0%
AACATAGACGATGTGATGCA+AGG - chr7_3:79266814-79266833 Msa1127650:intron 40.0%
GTTATTCTGTTCGAGATGCT+AGG - chr7_3:79266996-79267015 Msa1127650:CDS 40.0%
CGTTTCGGCTAAGCTGAAAA+TGG + chr7_3:79260308-79260327 None:intergenic 45.0%
CAGTTCAGTGTGTGAAAGAG+AGG - chr7_3:79260400-79260419 Msa1127650:three_prime_UTR 45.0%
CGGAAGAGTAAAGACGAAAC+CGG + chr7_3:79260526-79260545 None:intergenic 45.0%
CGGTTTCGTCTTTACTCTTC+CGG - chr7_3:79260524-79260543 Msa1127650:three_prime_UTR 45.0%
TACTCTGACTGTGACGTTTC+TGG + chr7_3:79260833-79260852 None:intergenic 45.0%
CACTGTGTCAAACACCAAAC+AGG - chr7_3:79261054-79261073 Msa1127650:intron 45.0%
CTTCTAATCGAAGGCCTGTT+TGG + chr7_3:79261071-79261090 None:intergenic 45.0%
!! ATTCAAGGAGGAGTGTTGAC+TGG + chr7_3:79261545-79261564 None:intergenic 45.0%
AAGGAAGGAAGGATTCAGGT+TGG + chr7_3:79262138-79262157 None:intergenic 45.0%
ACACAAGGAAGGAAGGATTC+AGG + chr7_3:79262142-79262161 None:intergenic 45.0%
CTGTTGTACACAAGGAAGGA+AGG + chr7_3:79262149-79262168 None:intergenic 45.0%
CATGCTGTTGTACACAAGGA+AGG + chr7_3:79262153-79262172 None:intergenic 45.0%
CGAAGTAAAAGGCAAGGGAA+CGG + chr7_3:79262397-79262416 None:intergenic 45.0%
GGCGCACTTATCGAAGTAAA+AGG + chr7_3:79262408-79262427 None:intergenic 45.0%
GCTCACGATCATAAGTCATG+TGG - chr7_3:79262478-79262497 Msa1127650:three_prime_UTR 45.0%
GGCTGCTGAAGATCAAACTT+TGG + chr7_3:79262583-79262602 None:intergenic 45.0%
TCAACATCAGGGAGAAGCTA+AGG + chr7_3:79262604-79262623 None:intergenic 45.0%
GTGTTGTCAGTTAGGACATG+TGG + chr7_3:79262643-79262662 None:intergenic 45.0%
ATCCACCAAACAGATGTTGG+TGG + chr7_3:79262689-79262708 None:intergenic 45.0%
! ACCAACATCTGTTTGGTGGA+TGG - chr7_3:79262688-79262707 Msa1127650:intron 45.0%
ACCATCCACCAAACAGATGT+TGG + chr7_3:79262692-79262711 None:intergenic 45.0%
AGAGACTTGTATTGCTGCTC+TGG - chr7_3:79262743-79262762 Msa1127650:intron 45.0%
GATAAGGTCTGAAGGTTCAG+TGG + chr7_3:79262827-79262846 None:intergenic 45.0%
CGAAGCAACTATCACTTCCT+TGG + chr7_3:79262926-79262945 None:intergenic 45.0%
! AAGGATGGAGGCGTATTTAG+AGG + chr7_3:79263364-79263383 None:intergenic 45.0%
TCATATATGGGCAGCAAGGA+TGG + chr7_3:79263379-79263398 None:intergenic 45.0%
! AGGTAATGGTAGGGCTTTGT+AGG - chr7_3:79263419-79263438 Msa1127650:intron 45.0%
! TCTAGAGCCTTCTTCTTGGA+GGG + chr7_3:79263527-79263546 None:intergenic 45.0%
! ATCTAGAGCCTTCTTCTTGG+AGG + chr7_3:79263528-79263547 None:intergenic 45.0%
! GGTATCTAGAGCCTTCTTCT+TGG + chr7_3:79263531-79263550 None:intergenic 45.0%
TATCCTTCATATAAGCGGGG+GGG - chr7_3:79263854-79263873 Msa1127650:intron 45.0%
GGTGAACACAAAACTGAAGC+AGG + chr7_3:79263906-79263925 None:intergenic 45.0%
GATACTCACACAGAACTGCA+AGG + chr7_3:79264307-79264326 None:intergenic 45.0%
CAGTTCTGTGTGAGTATCTG+TGG - chr7_3:79264309-79264328 Msa1127650:intron 45.0%
AGCCATCAATTTCCTGCAGA+TGG + chr7_3:79264421-79264440 None:intergenic 45.0%
GTAGGGAGACAAAAGCAAAC+AGG + chr7_3:79264726-79264745 None:intergenic 45.0%
!!! TACAATTTTGCAGGCACTGG+TGG - chr7_3:79264777-79264796 Msa1127650:intron 45.0%
!!! ACAATTTTGCAGGCACTGGT+GGG - chr7_3:79264778-79264797 Msa1127650:intron 45.0%
TTTCAGCATCCAACATGCAC+TGG - chr7_3:79265079-79265098 Msa1127650:intron 45.0%
TGCTACAGACTACAAACGGA+AGG + chr7_3:79265139-79265158 None:intergenic 45.0%
!! ACGGTGCTACAGACTACAAA+CGG + chr7_3:79265143-79265162 None:intergenic 45.0%
GGTTTGGACCTCAATTTCTC+AGG - chr7_3:79265193-79265212 Msa1127650:intron 45.0%
TTGGACCTCAATTTCTCAGG+AGG - chr7_3:79265196-79265215 Msa1127650:intron 45.0%
AGTAGCCTCCTGAGAAATTG+AGG + chr7_3:79265204-79265223 None:intergenic 45.0%
ACTGCAGCTATTGTAGGAGT+TGG - chr7_3:79265221-79265240 Msa1127650:intron 45.0%
AGTTCCCGTGACCGAAAAAT+TGG - chr7_3:79265369-79265388 Msa1127650:intron 45.0%
GTTCCCGTGACCGAAAAATT+GGG - chr7_3:79265370-79265389 Msa1127650:intron 45.0%
!! ACGTCCCAATTTTTCGGTCA+CGG + chr7_3:79265377-79265396 None:intergenic 45.0%
AATTGCAACGGAAACAGCAC+TGG + chr7_3:79265407-79265426 None:intergenic 45.0%
!! TGGTTTCCTTTGGCTCTGTT+AGG - chr7_3:79265608-79265627 Msa1127650:intron 45.0%
CATCAACCTAACAGAGCCAA+AGG + chr7_3:79265617-79265636 None:intergenic 45.0%
!! GGCTCTGTTAGGTTGATGAA+TGG - chr7_3:79265619-79265638 Msa1127650:intron 45.0%
TTCTATAGATCCGGTGGTTC+AGG - chr7_3:79265771-79265790 Msa1127650:intron 45.0%
ATAGCAATCACGATCCCAGT+TGG + chr7_3:79265846-79265865 None:intergenic 45.0%
AGATGAGCGTTCTCAGCATA+TGG - chr7_3:79265869-79265888 Msa1127650:intron 45.0%
!! GACATAGTTGATGGGGGATT+TGG - chr7_3:79266393-79266412 Msa1127650:intron 45.0%
! TTGAAAGCAGAGGGCACATA+AGG + chr7_3:79266496-79266515 None:intergenic 45.0%
ACACAGTACCTTGAGAGCTT+TGG + chr7_3:79266538-79266557 None:intergenic 45.0%
ATCAAAGCTTCGATCAGAGC+AGG - chr7_3:79266602-79266621 Msa1127650:CDS 45.0%
GTTCTTCTACGTAAGCCAGT+GGG - chr7_3:79266905-79266924 Msa1127650:intron 45.0%
AAGGAGCTTCGAAAGCTCAG+TGG - chr7_3:79260866-79260885 Msa1127650:three_prime_UTR 50.0%
GTGTCTGCGTTTGTGCTTCA+CGG + chr7_3:79260948-79260967 None:intergenic 50.0%
TCGTGTAAGTGTCTTGGGAG+AGG - chr7_3:79261110-79261129 Msa1127650:intron 50.0%
GTTGCTGTCATGGAACCAGA+AGG + chr7_3:79261622-79261641 None:intergenic 50.0%
GGAAAGCCTGGAACCAAAAC+AGG + chr7_3:79262007-79262026 None:intergenic 50.0%
TCCATCTATCGTGAACGCTG+CGG + chr7_3:79262097-79262116 None:intergenic 50.0%
CAGCGTTCACGATAGATGGA+TGG - chr7_3:79262097-79262116 Msa1127650:intron 50.0%
CGTTCACGATAGATGGATGG+TGG - chr7_3:79262100-79262119 Msa1127650:intron 50.0%
! TCACGATAGATGGATGGTGG+AGG - chr7_3:79262103-79262122 Msa1127650:intron 50.0%
GAAAGGCAAGAGCTTTGCCT+TGG + chr7_3:79262196-79262215 None:intergenic 50.0%
TATAAGCCAACTCTCTCGGG+TGG - chr7_3:79262518-79262537 Msa1127650:intron 50.0%
GGTCTCCACCAACATCTGTT+TGG - chr7_3:79262681-79262700 Msa1127650:intron 50.0%
CTCCACCAACATCTGTTTGG+TGG - chr7_3:79262684-79262703 Msa1127650:intron 50.0%
AGGTCTGAAGGTTCAGTGGA+AGG + chr7_3:79262823-79262842 None:intergenic 50.0%
TATATGGGCAGCAAGGATGG+AGG + chr7_3:79263376-79263395 None:intergenic 50.0%
CACAAGTCCCTCCAAGAAGA+AGG - chr7_3:79263517-79263536 Msa1127650:intron 50.0%
ATCCTTCATATAAGCGGGGG+GGG - chr7_3:79263855-79263874 Msa1127650:intron 50.0%
TCCTTTCTTCCTCTATGGCC+TGG + chr7_3:79264511-79264530 None:intergenic 50.0%
!! TGCATTTTGGAGGTACGAGC+AGG - chr7_3:79264590-79264609 Msa1127650:intron 50.0%
!!! CAATTTTGCAGGCACTGGTG+GGG - chr7_3:79264779-79264798 Msa1127650:intron 50.0%
GAGGCTACTGCAGCTATTGT+AGG - chr7_3:79265215-79265234 Msa1127650:intron 50.0%
!! CGTCCCAATTTTTCGGTCAC+GGG + chr7_3:79265376-79265395 None:intergenic 50.0%
TTCCGTTGCAATTCTCCCAC+AGG - chr7_3:79265414-79265433 Msa1127650:intron 50.0%
AGCCTGTGGGAGAATTGCAA+CGG + chr7_3:79265419-79265438 None:intergenic 50.0%
AATTCTCCCACAGGCTGATG+AGG - chr7_3:79265423-79265442 Msa1127650:intron 50.0%
TATAGATCCGGTGGTTCAGG+TGG - chr7_3:79265774-79265793 Msa1127650:intron 50.0%
TGATCAGTTACACGGCCTTG+AGG + chr7_3:79266772-79266791 None:intergenic 50.0%
CGTTCTTCTACGTAAGCCAG+TGG - chr7_3:79266904-79266923 Msa1127650:intron 50.0%
AAGGTGCGACGTTGCTGTCA+TGG + chr7_3:79261632-79261651 None:intergenic 55.0%
! TTTGGTTCCAGGCTTTCCCC+TGG - chr7_3:79262009-79262028 Msa1127650:intron 55.0%
ACTTGTTCCAGGGGAAAGCC+TGG + chr7_3:79262019-79262038 None:intergenic 55.0%
CCATCTATCGTGAACGCTGC+GGG + chr7_3:79262096-79262115 None:intergenic 55.0%
! TGACCTCTGGGAAGCTGTTG+AGG + chr7_3:79263337-79263356 None:intergenic 55.0%
TCCTTCATATAAGCGGGGGG+GGG - chr7_3:79263856-79263875 Msa1127650:intron 55.0%
CCTTCACCCAGGTTCAAACC+CGG - chr7_3:79264279-79264298 Msa1127650:intron 55.0%
CTTCACCCAGGTTCAAACCC+GGG - chr7_3:79264280-79264299 Msa1127650:intron 55.0%
AAGGTCCCGGGTTTGAACCT+GGG + chr7_3:79264288-79264307 None:intergenic 55.0%
ACACAGAACTGCAAGGTCCC+GGG + chr7_3:79264300-79264319 None:intergenic 55.0%
CACACAGAACTGCAAGGTCC+CGG + chr7_3:79264301-79264320 None:intergenic 55.0%
GGCAACAGAGGAAATGAGCC+AGG - chr7_3:79264490-79264509 Msa1127650:intron 55.0%
GGAAATGAGCCAGGCCATAG+AGG - chr7_3:79264499-79264518 Msa1127650:intron 55.0%
GCCAGGCCATAGAGGAAGAA+AGG - chr7_3:79264507-79264526 Msa1127650:intron 55.0%
CGGAAGGTTCCAGTGCATGT+TGG + chr7_3:79265091-79265110 None:intergenic 55.0%
ATGCTGACCACCTGAACCAC+CGG + chr7_3:79265784-79265803 None:intergenic 55.0%
CTGTTCGAGATGCTAGGCAG+AGG - chr7_3:79267002-79267021 Msa1127650:CDS 55.0%
TGCTAGGCAGAGGAAGAGCA+TGG - chr7_3:79267012-79267031 Msa1127650:exon 55.0%
CCCGCAGCGTTCACGATAGA+TGG - chr7_3:79262093-79262112 Msa1127650:intron 60.0%
CCAACACCACCCGAGAGAGT+TGG + chr7_3:79262527-79262546 None:intergenic 60.0%
CCAACTCTCTCGGGTGGTGT+TGG - chr7_3:79262524-79262543 Msa1127650:intron 60.0%
! ACTCTCTCGGGTGGTGTTGG+TGG - chr7_3:79262527-79262546 Msa1127650:intron 60.0%
! CCTCTGGGAAGCTGTTGAGG+AGG + chr7_3:79263334-79263353 None:intergenic 60.0%
CCTCCTCAACAGCTTCCCAG+AGG - chr7_3:79263331-79263350 Msa1127650:intron 60.0%
ACCCCCCCCCGCTTATATGA+AGG + chr7_3:79263860-79263879 None:intergenic 60.0%
TTCATATAAGCGGGGGGGGG+TGG - chr7_3:79263859-79263878 Msa1127650:intron 60.0%
TCATATAAGCGGGGGGGGGT+GGG - chr7_3:79263860-79263879 Msa1127650:intron 60.0%
CCGGGTTTGAACCTGGGTGA+AGG + chr7_3:79264282-79264301 None:intergenic 60.0%
CAAGGTCCCGGGTTTGAACC+TGG + chr7_3:79264289-79264308 None:intergenic 60.0%
!!! TTTTGCAGGCACTGGTGGGG+AGG - chr7_3:79264782-79264801 Msa1127650:intron 60.0%
!! TGCAGGCACTGGTGGGGAGG+AGG - chr7_3:79264785-79264804 Msa1127650:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79260277 79267177 79260277 ID=Msa1127650;Name=Msa1127650
chr7_3 mRNA 79260277 79267177 79260277 ID=Msa1127650-mRNA-1;Parent=Msa1127650;Name=Msa1127650-mRNA-1;_AED=0.21;_eAED=0.21;_QI=154|1|1|1|0.8|0.81|11|1269|84
chr7_3 exon 79260277 79260730 79260277 ID=Msa1127650-mRNA-1:exon:22422;Parent=Msa1127650-mRNA-1
chr7_3 exon 79260831 79260926 79260831 ID=Msa1127650-mRNA-1:exon:22421;Parent=Msa1127650-mRNA-1
chr7_3 exon 79261533 79261722 79261533 ID=Msa1127650-mRNA-1:exon:22420;Parent=Msa1127650-mRNA-1
chr7_3 exon 79262010 79262087 79262010 ID=Msa1127650-mRNA-1:exon:22419;Parent=Msa1127650-mRNA-1
chr7_3 exon 79262165 79262239 79262165 ID=Msa1127650-mRNA-1:exon:22418;Parent=Msa1127650-mRNA-1
chr7_3 exon 79262453 79262531 79262453 ID=Msa1127650-mRNA-1:exon:22417;Parent=Msa1127650-mRNA-1
chr7_3 exon 79262616 79262664 79262616 ID=Msa1127650-mRNA-1:exon:22416;Parent=Msa1127650-mRNA-1
chr7_3 exon 79262843 79263026 79262843 ID=Msa1127650-mRNA-1:exon:22415;Parent=Msa1127650-mRNA-1
chr7_3 exon 79266526 79266628 79266526 ID=Msa1127650-mRNA-1:exon:22414;Parent=Msa1127650-mRNA-1
chr7_3 exon 79266726 79266826 79266726 ID=Msa1127650-mRNA-1:exon:22413;Parent=Msa1127650-mRNA-1
chr7_3 exon 79266909 79267177 79266909 ID=Msa1127650-mRNA-1:exon:22412;Parent=Msa1127650-mRNA-1
chr7_3 five_prime_UTR 79267024 79267177 79267024 ID=Msa1127650-mRNA-1:five_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 CDS 79266909 79267023 79266909 ID=Msa1127650-mRNA-1:cds;Parent=Msa1127650-mRNA-1
chr7_3 CDS 79266726 79266826 79266726 ID=Msa1127650-mRNA-1:cds;Parent=Msa1127650-mRNA-1
chr7_3 CDS 79266590 79266628 79266590 ID=Msa1127650-mRNA-1:cds;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79266526 79266589 79266526 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79262843 79263026 79262843 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79262616 79262664 79262616 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79262453 79262531 79262453 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79262165 79262239 79262165 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79262010 79262087 79262010 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79261533 79261722 79261533 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79260831 79260926 79260831 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
chr7_3 three_prime_UTR 79260277 79260730 79260277 ID=Msa1127650-mRNA-1:three_prime_utr;Parent=Msa1127650-mRNA-1
Gene Sequence

>Msa1127650

ATGAGGATTAATGGTAGATTTATGAATTTCCGTTATCTTTTTCAGCTGCGGAAGCGATTCGAATCAAAATCCGAACTCTCACTTCCGAATTTCCGGTTTCGTCTTTACTCTTCCGAAGTGGAACCTGAAATATCACCGGATCTGTTAAATATAATGGAACAAAGATTCTCTGCTATTAAGCACAGGGCTACTTGTCTTGATAATCTTATTAATCAGACAGCCAGAAACGTCACAGTCAGAGTATGCAAGAGCTAA

Protein sequence

>Msa1127650

MRINGRFMNFRYLFQLRKRFESKSELSLPNFRFRLYSSEVEPEISPDLLNIMEQRFSAIKHRATCLDNLINQTARNVTVRVCKS*