AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460110 MtrunA17_Chr3g0109341 71.465 396 43 3 1 396 1 326 1.02e-164 466
Msa0460110 MtrunA17_Chr3g0109331 55.808 396 106 5 1 394 1 329 2.01e-120 354
Msa0460110 MtrunA17_Chr7g0273841 36.041 394 133 8 15 389 94 387 6.19e-47 166
Msa0460110 MtrunA17_Chr8g0361041 58.333 72 30 0 222 293 40 111 3.13e-18 80.1
Msa0460110 MtrunA17_Chr8g0349401 57.576 66 27 1 324 389 11 75 1.68e-15 71.2
Msa0460110 MtrunA17_Chr8g0361031 49.367 79 27 1 324 389 18 96 3.76e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460110 AT1G54520.1 47.619 168 59 3 222 389 250 388 5.84e-35 134

Find 99 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGCTGGTGAGGTATTA+TGG 0.225096 3_3:+57134266 Msa0460110:intron
TGGTGTAAAGGGGAAAATTT+AGG 0.245726 3_3:+57131148 Msa0460110:intron
AAGGGGAAAATTTAGGATTA+TGG 0.252835 3_3:+57131155 Msa0460110:intron
GATGCAGAGTTGTGTGCTTC+TGG 0.280183 3_3:+57131206 Msa0460110:CDS
CTTTGCAGGTGGATCTTAAA+AGG 0.280869 3_3:+57132159 Msa0460110:intron
TCATGGCAAATGAGTTTATC+TGG 0.305108 3_3:+57134583 Msa0460110:CDS
AGCTGCTAATACACGGTATA+AGG 0.310599 3_3:+57129956 Msa0460110:CDS
GAAGGGAGCTGAAGATTTAA+AGG 0.325037 3_3:+57134107 Msa0460110:CDS
GCCTCCTCAGGAGGTGTTGC+GGG 0.330241 3_3:+57129496 Msa0460110:CDS
ATTCAAATTCTCCAAGTGTA+TGG 0.331332 3_3:+57129584 Msa0460110:CDS
GTGCTTCTGGTCTGCAGCTT+TGG 0.333625 3_3:+57131219 Msa0460110:CDS
TTGTTCATTGTTGGCATAAT+CGG 0.340299 3_3:+57129715 Msa0460110:CDS
TCTTCAGCTCCCTTCATGTT+AGG 0.359596 3_3:-57134099 None:intergenic
CCCTTTCTTCAATTGATAGT+TGG 0.380058 3_3:-57132211 None:intergenic
AGTTACTGTTCTCAAGCTTC+AGG 0.384139 3_3:+57129783 Msa0460110:CDS
TGAAGCTTGAGAACAGTAAC+TGG 0.387588 3_3:-57129781 None:intergenic
TCAGCATCAGCATCACTAGA+AGG 0.394193 3_3:-57129631 None:intergenic
TACCTGTATAAACAGTTAAT+AGG 0.399358 3_3:-57130724 None:intergenic
TGATTCAGAGGATGATTTAG+AGG 0.401140 3_3:-57129551 None:intergenic
AGCTTAAATCCCTTCTCTAC+TGG 0.408193 3_3:+57134142 Msa0460110:CDS
TTTGTTTAAGGTTGGAATGT+TGG 0.409336 3_3:+57129887 Msa0460110:intron
CATTTCATATTTCATAGACT+TGG 0.414063 3_3:-57134353 None:intergenic
ATCCTATTAACTGTTTATAC+AGG 0.419345 3_3:+57130722 Msa0460110:CDS
CCTATGTTAGGTAACAATAT+TGG 0.429417 3_3:+57134050 Msa0460110:intron
AACTCAGTTTCAGCCTCCTC+AGG 0.433204 3_3:+57129484 Msa0460110:CDS
GCTTTCTCTATGAGTGGAGG+TGG 0.439122 3_3:+57130698 Msa0460110:CDS
GGTTGGAATGTTGGATGAGA+TGG 0.439180 3_3:+57129896 Msa0460110:intron
AACAGAGACAATACAAACTT+TGG 0.439999 3_3:+57132009 Msa0460110:intron
AGAGGATGATTTAGAGGATG+AGG 0.443481 3_3:-57129545 None:intergenic
AGTTTACTGAAGACTGTTGC+TGG 0.456610 3_3:+57134610 Msa0460110:CDS
ACCAACTATCAATTGAAGAA+AGG 0.462903 3_3:+57132210 Msa0460110:CDS
TAAGAAGCCAGAGTTATGAT+AGG 0.462997 3_3:+57132288 Msa0460110:CDS
CCAACTATCAATTGAAGAAA+GGG 0.475889 3_3:+57132211 Msa0460110:CDS
CATCATGGTTACTGTATAGC+AGG 0.483872 3_3:+57132037 Msa0460110:CDS
GGGTGTCATCCACTTTCTGT+GGG 0.484177 3_3:-57134291 None:intergenic
AGGGTGTCATCCACTTTCTG+TGG 0.484320 3_3:-57134292 None:intergenic
CTCACTGCTTTCTCTATGAG+TGG 0.484912 3_3:+57130692 Msa0460110:CDS
AGCCTCCTCAGGAGGTGTTG+CGG 0.492206 3_3:+57129495 Msa0460110:CDS
GGTGTTGTGGGGAGTTATCA+TGG 0.495856 3_3:+57134566 Msa0460110:CDS
CAAACTTTGGATAAACATCA+TGG 0.498262 3_3:+57132022 Msa0460110:CDS
GATGATAAGGTTACAAATGA+TGG 0.498935 3_3:+57129676 Msa0460110:CDS
TCCTCAGGAGGTGTTGCGGG+AGG 0.500511 3_3:+57129499 Msa0460110:CDS
ATTATGGACCCCACAGAAAG+TGG 0.501516 3_3:+57134282 Msa0460110:CDS
AGGAGGCTGAAACTGAGTTA+AGG 0.510377 3_3:-57129480 None:intergenic
TTCAAATTCTCCAAGTGTAT+GGG 0.512876 3_3:+57129585 Msa0460110:CDS
CCCTCCCGCAACACCTCCTG+AGG 0.524621 3_3:-57129500 None:intergenic
ATAGATCTCTCCAGTAGAGA+AGG 0.524728 3_3:-57134152 None:intergenic
TGATGCTGATGCTGATGATA+AGG 0.527976 3_3:+57129663 Msa0460110:CDS
GATGGGATGTACATTACAAA+GGG 0.528262 3_3:+57129914 Msa0460110:CDS
TCCCGCAACACCTCCTGAGG+AGG 0.529539 3_3:-57129497 None:intergenic
CAGCATCAGCATCACTAGAA+GGG 0.532488 3_3:-57129630 None:intergenic
TGCTAAACCTATCATAACTC+TGG 0.532572 3_3:-57132295 None:intergenic
CATTACAAAGGGATCTAGCT+AGG 0.535268 3_3:+57129925 Msa0460110:CDS
TTCATAGACTTGGCTAGCTG+AGG 0.537152 3_3:-57134343 None:intergenic
AGTTGCAGACAAGGTGTTGT+GGG 0.537416 3_3:+57134554 Msa0460110:CDS
CGAGTCGACCATCACTTGCT+TGG 0.542974 3_3:+57134651 Msa0460110:CDS
CCTCAGGAGGTGTTGCGGGA+GGG 0.546260 3_3:+57129500 Msa0460110:CDS
GTTGGAATGTTGGATGAGAT+GGG 0.546768 3_3:+57129897 Msa0460110:CDS
GAAATTCTTTCAGGCTGGTG+AGG 0.547725 3_3:+57134258 Msa0460110:intron
AAGGTTACAAATGATGGAGG+AGG 0.551038 3_3:+57129682 Msa0460110:CDS
TGAACATCAACTCTAGCAGC+AGG 0.554516 3_3:-57131183 None:intergenic
ATGCAGATGGTTTGAGTGGA+GGG 0.555357 3_3:+57130662 Msa0460110:intron
GGTGGATCTTAAAAGGAGCC+AGG 0.555856 3_3:+57132166 Msa0460110:intron
TCATAGACTTGGCTAGCTGA+GGG 0.559467 3_3:-57134342 None:intergenic
GTGGATGACACCCTTTCAGA+TGG 0.559816 3_3:+57134301 Msa0460110:CDS
TGATGTTGCACCCATACACT+TGG 0.564612 3_3:-57129595 None:intergenic
GAGTTGCAGACAAGGTGTTG+TGG 0.566015 3_3:+57134553 Msa0460110:CDS
AGGTTACAAATGATGGAGGA+GGG 0.567940 3_3:+57129683 Msa0460110:CDS
ATCACTAGAAGGGGTAACAT+AGG 0.569608 3_3:-57129620 None:intergenic
ACATAAGCTACCTAACATGA+AGG 0.574557 3_3:+57134089 Msa0460110:CDS
TATGAAATGAATAAACAAGT+GGG 0.578318 3_3:+57134367 Msa0460110:CDS
TGTCATGCAGATGGTTTGAG+TGG 0.589501 3_3:+57130658 Msa0460110:intron
CTTTCTCTATGAGTGGAGGT+GGG 0.590914 3_3:+57130699 Msa0460110:CDS
AGATGGGATGTACATTACAA+AGG 0.592518 3_3:+57129913 Msa0460110:CDS
TAGATCTCTCCAGTAGAGAA+GGG 0.599653 3_3:-57134151 None:intergenic
AGCATCAGCATCACTAGAAG+GGG 0.601364 3_3:-57129629 None:intergenic
GATAAGGTTACAAATGATGG+AGG 0.603841 3_3:+57129679 Msa0460110:CDS
GATCTTAAAAGGAGCCAGGA+GGG 0.605501 3_3:+57132170 Msa0460110:CDS
TCTGGAATGAGTTGCAGACA+AGG 0.619373 3_3:+57134545 Msa0460110:CDS
CTTAAAAGGAGCCAGGAGGG+TGG 0.619800 3_3:+57132173 Msa0460110:CDS
ATATGAAATGAATAAACAAG+TGG 0.621892 3_3:+57134366 Msa0460110:CDS
ACTGCTTTCTCTATGAGTGG+AGG 0.624916 3_3:+57130695 Msa0460110:CDS
GGTTACAAATGATGGAGGAG+GGG 0.626908 3_3:+57129684 Msa0460110:CDS
GCTAATACACGGTATAAGGA+AGG 0.628417 3_3:+57129960 Msa0460110:CDS
TCAGTTTCAGCCTCCTCAGG+AGG 0.630087 3_3:+57129487 Msa0460110:CDS
GTTTAGCAATGAATATTCCA+CGG 0.633256 3_3:+57132310 Msa0460110:CDS
TCATTGAGCCAAGCAAGTGA+TGG 0.636032 3_3:-57134659 None:intergenic
TTGCAGAAGCTGCTAATACA+CGG 0.637222 3_3:+57129949 Msa0460110:CDS
ACAATATTGGTAGCTACTAG+AGG 0.643540 3_3:+57134063 Msa0460110:CDS
CATGCAGATGGTTTGAGTGG+AGG 0.646575 3_3:+57130661 Msa0460110:intron
ATAAGTTGTGAATGATTCAG+AGG 0.648863 3_3:-57129563 None:intergenic
CATAAGCTACCTAACATGAA+GGG 0.659099 3_3:+57134090 Msa0460110:CDS
GGCGTGTGCTGTTTATTGAG+AGG 0.672280 3_3:+57129981 Msa0460110:CDS
GGTGTCATCCACTTTCTGTG+GGG 0.686496 3_3:-57134290 None:intergenic
GGATCTTAAAAGGAGCCAGG+AGG 0.690908 3_3:+57132169 Msa0460110:CDS
GTTCGACAACAAGTACATAG+TGG 0.695714 3_3:+57132968 Msa0460110:CDS
TTGTTGTCGAACCCACTGCG+AGG 0.698682 3_3:-57132957 None:intergenic
GTTGCAGACAAGGTGTTGTG+GGG 0.737948 3_3:+57134555 Msa0460110:CDS
ACATCAACTCTAGCAGCAGG+CGG 0.754215 3_3:-57131180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTAAATCATTCT+TGG - chr3_3:57131934-57131953 None:intergenic 10.0%
!! ATCTACTAAAAAAATTAAAA+TGG - chr3_3:57133327-57133346 None:intergenic 10.0%
!! GTATTAAATTTACTTACAAT+TGG - chr3_3:57131445-57131464 None:intergenic 15.0%
!!! ATTTTTTTTCAAATTGTACA+AGG + chr3_3:57131945-57131964 Msa0460110:intron 15.0%
!!! ATTTTGTAAAAGCAATTAAA+GGG + chr3_3:57132354-57132373 Msa0460110:intron 15.0%
!!! ATTGTTTTATTTTTTTGAGT+TGG + chr3_3:57133020-57133039 Msa0460110:intron 15.0%
!!! ATATTACCTTATATTTTGTT+TGG + chr3_3:57133841-57133860 Msa0460110:intron 15.0%
!!! TACATAATTTTCTTAATTTG+TGG + chr3_3:57133944-57133963 Msa0460110:intron 15.0%
!! AAAAAAAACGAATATGTATT+TGG - chr3_3:57134516-57134535 None:intergenic 15.0%
!!! TGTTAGTCAAGTAATTTTAA+TGG - chr3_3:57130308-57130327 None:intergenic 20.0%
!! AGACCAAAATAATATTACTT+GGG - chr3_3:57131903-57131922 None:intergenic 20.0%
!! TAGACCAAAATAATATTACT+TGG - chr3_3:57131904-57131923 None:intergenic 20.0%
!! TTAAAAATTATATCATACCG+TGG - chr3_3:57132330-57132349 None:intergenic 20.0%
!!! GATTTTGTAAAAGCAATTAA+AGG + chr3_3:57132353-57132372 Msa0460110:intron 20.0%
!!! TTATTTTGAAACAAATAGTG+TGG + chr3_3:57132461-57132480 Msa0460110:intron 20.0%
!!! TTTCTCTTTTTCAAATTTCT+CGG - chr3_3:57132937-57132956 None:intergenic 20.0%
!! TGGTATGATATAATTAACTT+TGG + chr3_3:57132988-57133007 Msa0460110:intron 20.0%
!! GGTATGATATAATTAACTTT+GGG + chr3_3:57132989-57133008 Msa0460110:intron 20.0%
!! CAAACAAGGATAAAATATTA+TGG - chr3_3:57133241-57133260 None:intergenic 20.0%
!! ATTTGAAGATATCAAACATT+AGG - chr3_3:57133597-57133616 None:intergenic 20.0%
!! TAAATCCTCAATTAAACATA+AGG + chr3_3:57133616-57133635 Msa0460110:intron 20.0%
!!! TATTTATCTAAGATAATCCA+AGG - chr3_3:57133785-57133804 None:intergenic 20.0%
!! ATATGAAATGAATAAACAAG+TGG + chr3_3:57134366-57134385 Msa0460110:CDS 20.0%
!! TATGAAATGAATAAACAAGT+GGG + chr3_3:57134367-57134386 Msa0460110:CDS 20.0%
!!! GTTTTTTTTGTTTATAAGTC+TGG + chr3_3:57134527-57134546 Msa0460110:intron 20.0%
!!! GTTTTTGTGTCTTTTGTTTA+AGG + chr3_3:57129875-57129894 Msa0460110:intron 25.0%
! TGTTAGTCAAGTAATTTGAA+TGG - chr3_3:57130272-57130291 None:intergenic 25.0%
!!! TTTATGGAATAAGTTTTGGT+TGG - chr3_3:57130341-57130360 None:intergenic 25.0%
! CAAAACTTATTCCATAAAGT+GGG + chr3_3:57130343-57130362 Msa0460110:intron 25.0%
! AAAACTTATTCCATAAAGTG+GGG + chr3_3:57130344-57130363 Msa0460110:intron 25.0%
!!! CATTTTGATATAGATTGTTG+AGG + chr3_3:57130507-57130526 Msa0460110:intron 25.0%
! ATCCTATTAACTGTTTATAC+AGG + chr3_3:57130722-57130741 Msa0460110:CDS 25.0%
! TACCTGTATAAACAGTTAAT+AGG - chr3_3:57130727-57130746 None:intergenic 25.0%
! ATTAACTGTTTATACAGGTA+AGG + chr3_3:57130727-57130746 Msa0460110:intron 25.0%
! CAATAACTTTATACCAATTC+CGG + chr3_3:57131383-57131402 Msa0460110:intron 25.0%
! TTCTTGTGTTATAGTGAAAA+TGG + chr3_3:57131535-57131554 Msa0460110:intron 25.0%
!! TTTTATTCAACGTGAGAATT+GGG - chr3_3:57131771-57131790 None:intergenic 25.0%
!! TTTTTATTCAACGTGAGAAT+TGG - chr3_3:57131772-57131791 None:intergenic 25.0%
! GACCAAAATAATATTACTTG+GGG - chr3_3:57131902-57131921 None:intergenic 25.0%
! CTATAACTCAAATTGTACTT+CGG - chr3_3:57132100-57132119 None:intergenic 25.0%
!! TTTGAGTTATAGCCTATAAT+AGG + chr3_3:57132108-57132127 Msa0460110:intron 25.0%
! AAAATAACCATACAGAAATG+GGG - chr3_3:57132448-57132467 None:intergenic 25.0%
! CAAAATAACCATACAGAAAT+GGG - chr3_3:57132449-57132468 None:intergenic 25.0%
! TCAAAATAACCATACAGAAA+TGG - chr3_3:57132450-57132469 None:intergenic 25.0%
!!! AAGCACATTTTAGAGTTTAA+TGG - chr3_3:57132552-57132571 None:intergenic 25.0%
! TGATTTCAAAGCCATTAAAA+AGG - chr3_3:57132696-57132715 None:intergenic 25.0%
! GATAACAGATATAGAATTGA+AGG - chr3_3:57133058-57133077 None:intergenic 25.0%
! AATTCTATATCTGTTATCAG+AGG + chr3_3:57133060-57133079 Msa0460110:intron 25.0%
! ATTCTATATCTGTTATCAGA+GGG + chr3_3:57133061-57133080 Msa0460110:intron 25.0%
!!! TAGTTTTTGGAAAATCATGT+TGG + chr3_3:57133118-57133137 Msa0460110:intron 25.0%
!! AAGAATTTTATGTGCATGTT+TGG - chr3_3:57133166-57133185 None:intergenic 25.0%
! GAATATAGTCAAAGTAGTAA+AGG - chr3_3:57133355-57133374 None:intergenic 25.0%
! TTACTCCTTATGTTTAATTG+AGG - chr3_3:57133624-57133643 None:intergenic 25.0%
!! ACTATTCATGCAATATTTTC+TGG + chr3_3:57133660-57133679 Msa0460110:intron 25.0%
!!! ACCTTATATTTTGTTTGGAT+TGG + chr3_3:57133846-57133865 Msa0460110:intron 25.0%
!!! CCTTATATTTTGTTTGGATT+GGG + chr3_3:57133847-57133866 Msa0460110:intron 25.0%
! TTCTTATTACATGTAACCTA+TGG + chr3_3:57133970-57133989 Msa0460110:intron 25.0%
! TATAACCTTGAAATTCTTTC+AGG + chr3_3:57134249-57134268 Msa0460110:intron 25.0%
! CATTTCATATTTCATAGACT+TGG - chr3_3:57134356-57134375 None:intergenic 25.0%
! ATTCAATTGCTAGGAAAAAA+AGG - chr3_3:57134418-57134437 None:intergenic 25.0%
! CAAAGATAAATTCAATTGCT+AGG - chr3_3:57134427-57134446 None:intergenic 25.0%
!!! TTGTGTTGTTTTCGTTAACA+TGG + chr3_3:57129455-57129474 Msa0460110:CDS 30.0%
ATAAGTTGTGAATGATTCAG+AGG - chr3_3:57129566-57129585 None:intergenic 30.0%
ATTCAAATTCTCCAAGTGTA+TGG + chr3_3:57129584-57129603 Msa0460110:CDS 30.0%
TTCAAATTCTCCAAGTGTAT+GGG + chr3_3:57129585-57129604 Msa0460110:CDS 30.0%
GATGATAAGGTTACAAATGA+TGG + chr3_3:57129676-57129695 Msa0460110:CDS 30.0%
TTGTTCATTGTTGGCATAAT+CGG + chr3_3:57129715-57129734 Msa0460110:CDS 30.0%
!! TTGTGTCTTTTGTTTAAGGT+TGG + chr3_3:57129879-57129898 Msa0460110:intron 30.0%
! TTTGTTTAAGGTTGGAATGT+TGG + chr3_3:57129887-57129906 Msa0460110:intron 30.0%
TCCATAAGTATATGTCTGTT+GGG + chr3_3:57130219-57130238 Msa0460110:intron 30.0%
! CCACTTTATGGAATAAGTTT+TGG - chr3_3:57130345-57130364 None:intergenic 30.0%
CCAAAACTTATTCCATAAAG+TGG + chr3_3:57130342-57130361 Msa0460110:intron 30.0%
! AAGTTATATGTTGACTGTTG+AGG + chr3_3:57130387-57130406 Msa0460110:intron 30.0%
TTTGATATAGATTGTTGAGG+TGG + chr3_3:57130510-57130529 Msa0460110:intron 30.0%
TTGATATAGATTGTTGAGGT+GGG + chr3_3:57130511-57130530 Msa0460110:intron 30.0%
TAGGTAGAGGTAAGAAATAA+AGG + chr3_3:57130535-57130554 Msa0460110:intron 30.0%
TAGAGGTAAGAAATAAAGGA+AGG + chr3_3:57130539-57130558 Msa0460110:intron 30.0%
AGAGGTAAGAAATAAAGGAA+GGG + chr3_3:57130540-57130559 Msa0460110:intron 30.0%
! TAATTTGGAATGCTACACTT+TGG + chr3_3:57130571-57130590 Msa0460110:intron 30.0%
! ATGATTTGGAAGACAAGAAA+TGG + chr3_3:57130594-57130613 Msa0460110:intron 30.0%
! TGATTTGGAAGACAAGAAAT+GGG + chr3_3:57130595-57130614 Msa0460110:intron 30.0%
GATTGTATTTGTGAATGAAG+TGG + chr3_3:57130617-57130636 Msa0460110:intron 30.0%
! TTAAACTTTTGTCATGCAGA+TGG + chr3_3:57130649-57130668 Msa0460110:intron 30.0%
!!! AGTTTCTGTAGCTGTTTTTT+CGG + chr3_3:57130931-57130950 Msa0460110:intron 30.0%
! TAGTTTGTAGCTGTGATTTA+TGG + chr3_3:57131001-57131020 Msa0460110:intron 30.0%
! AAGGGGAAAATTTAGGATTA+TGG + chr3_3:57131155-57131174 Msa0460110:intron 30.0%
AAACAGCTCAAAATAACCTA+GGG - chr3_3:57131258-57131277 None:intergenic 30.0%
! TTTCTGTTTTGTAGCTAGTT+TGG + chr3_3:57131275-57131294 Msa0460110:intron 30.0%
!! AGCTAGTTTGGTTAGTATTT+TGG + chr3_3:57131287-57131306 Msa0460110:intron 30.0%
AATACGTCATATTACACTAC+AGG - chr3_3:57131321-57131340 None:intergenic 30.0%
! CGTATTTTCTTTTTGTTGCA+CGG + chr3_3:57131335-57131354 Msa0460110:intron 30.0%
AGCATTAAGAAAGTTTGTAG+TGG - chr3_3:57131467-57131486 None:intergenic 30.0%
TTCTTACAAAATTGACGGAA+GGG - chr3_3:57131640-57131659 None:intergenic 30.0%
ATTCTTACAAAATTGACGGA+AGG - chr3_3:57131641-57131660 None:intergenic 30.0%
GCTCATTCTTACAAAATTGA+CGG - chr3_3:57131645-57131664 None:intergenic 30.0%
TGAAACGAGTTTATAAGTAG+TGG + chr3_3:57131799-57131818 Msa0460110:intron 30.0%
! AGCCCCAAGTAATATTATTT+TGG + chr3_3:57131897-57131916 Msa0460110:intron 30.0%
! TTGATATACTTCTTGTTGTC+TGG + chr3_3:57131978-57131997 Msa0460110:intron 30.0%
AACAGAGACAATACAAACTT+TGG + chr3_3:57132009-57132028 Msa0460110:intron 30.0%
CAAACTTTGGATAAACATCA+TGG + chr3_3:57132022-57132041 Msa0460110:CDS 30.0%
AATTGTACTTCGGACTAATT+AGG - chr3_3:57132090-57132109 None:intergenic 30.0%
TAGCCTATAATAGGTGTTAA+AGG + chr3_3:57132117-57132136 Msa0460110:intron 30.0%
AGCCTATAATAGGTGTTAAA+GGG + chr3_3:57132118-57132137 Msa0460110:intron 30.0%
ACCAACTATCAATTGAAGAA+AGG + chr3_3:57132210-57132229 Msa0460110:CDS 30.0%
CCAACTATCAATTGAAGAAA+GGG + chr3_3:57132211-57132230 Msa0460110:CDS 30.0%
GAAGAAAGGGAAAAATTTGA+TGG + chr3_3:57132224-57132243 Msa0460110:CDS 30.0%
GTTTAGCAATGAATATTCCA+CGG + chr3_3:57132310-57132329 Msa0460110:CDS 30.0%
TGTAAAAGCAATTAAAGGGT+AGG + chr3_3:57132358-57132377 Msa0460110:intron 30.0%
AATTAAAGGGTAGGTACTTA+CGG + chr3_3:57132367-57132386 Msa0460110:intron 30.0%
!! CTTCAATTTCTAGTGATATG+CGG + chr3_3:57132569-57132588 Msa0460110:intron 30.0%
!! TTCAATTTCTAGTGATATGC+GGG + chr3_3:57132570-57132589 Msa0460110:intron 30.0%
! TTTCACTGCAAAACTTTTCA+CGG + chr3_3:57132746-57132765 Msa0460110:intron 30.0%
GGATAAAATATTATGGCGTT+GGG - chr3_3:57133234-57133253 None:intergenic 30.0%
AGGATAAAATATTATGGCGT+TGG - chr3_3:57133235-57133254 None:intergenic 30.0%
ATTGGTATCACATTAGAGTA+TGG - chr3_3:57133454-57133473 None:intergenic 30.0%
TATCACATTAGAACATGGAT+TGG - chr3_3:57133472-57133491 None:intergenic 30.0%
ATTGGTATCACATTAGAACA+TGG - chr3_3:57133477-57133496 None:intergenic 30.0%
TGGACATAAGTATACTACAT+TGG - chr3_3:57133495-57133514 None:intergenic 30.0%
TGTACAAGTAATGTTCTCAA+AGG - chr3_3:57133559-57133578 None:intergenic 30.0%
CCCAATCCAAACAAAATATA+AGG - chr3_3:57133850-57133869 None:intergenic 30.0%
!! CAACATCTTTTTAGTCTAAG+TGG + chr3_3:57133894-57133913 Msa0460110:intron 30.0%
AATCCTTGAGATATTCACAA+AGG + chr3_3:57133920-57133939 Msa0460110:intron 30.0%
GTAAGAAGTCAAAATACCAT+AGG - chr3_3:57133989-57134008 None:intergenic 30.0%
! TATTTGAGATGTCCTATGTT+AGG + chr3_3:57134038-57134057 Msa0460110:intron 30.0%
CCAATATTGTTACCTAACAT+AGG - chr3_3:57134053-57134072 None:intergenic 30.0%
CCTATGTTAGGTAACAATAT+TGG + chr3_3:57134050-57134069 Msa0460110:intron 30.0%
! AAGTAGTTTTCCATCTGAAA+GGG - chr3_3:57134314-57134333 None:intergenic 30.0%
! TAAGTAGTTTTCCATCTGAA+AGG - chr3_3:57134315-57134334 None:intergenic 30.0%
TCTTTGTAAAAAGTAGCAGT+TGG + chr3_3:57134441-57134460 Msa0460110:intron 30.0%
TGATTCAGAGGATGATTTAG+AGG - chr3_3:57129554-57129573 None:intergenic 35.0%
GATAAGGTTACAAATGATGG+AGG + chr3_3:57129679-57129698 Msa0460110:CDS 35.0%
!! GTCGTGTTTTTGTTCATTGT+TGG + chr3_3:57129706-57129725 Msa0460110:CDS 35.0%
AGATGGGATGTACATTACAA+AGG + chr3_3:57129913-57129932 Msa0460110:CDS 35.0%
GATGGGATGTACATTACAAA+GGG + chr3_3:57129914-57129933 Msa0460110:CDS 35.0%
AGTTGTACACATGCATTCAA+TGG - chr3_3:57130140-57130159 None:intergenic 35.0%
! GTACAACTTTTGTACACTGA+CGG + chr3_3:57130152-57130171 Msa0460110:intron 35.0%
GTCCATAAGTATATGTCTGT+TGG + chr3_3:57130218-57130237 Msa0460110:intron 35.0%
TCCCAACAGACATATACTTA+TGG - chr3_3:57130223-57130242 None:intergenic 35.0%
! TTTTTATCCAGTCTCAAGTC+CGG - chr3_3:57130436-57130455 None:intergenic 35.0%
CACATTGATATAGATTGTCG+AGG + chr3_3:57130461-57130480 Msa0460110:intron 35.0%
ATTGATATAGATTGTCGAGG+TGG + chr3_3:57130464-57130483 Msa0460110:intron 35.0%
TTGATATAGATTGTCGAGGT+GGG + chr3_3:57130465-57130484 Msa0460110:intron 35.0%
TGATATAGATTGTTGAGGTG+GGG + chr3_3:57130512-57130531 Msa0460110:intron 35.0%
AGAAATAAAGGAAGGGAATC+TGG + chr3_3:57130547-57130566 Msa0460110:intron 35.0%
ATGCTACACTTTGGATGATT+TGG + chr3_3:57130580-57130599 Msa0460110:intron 35.0%
TGTTTATACAGGTAAGGAGT+GGG + chr3_3:57130733-57130752 Msa0460110:intron 35.0%
! TTTGGGCTTAGTTGTTATTC+TGG + chr3_3:57130833-57130852 Msa0460110:intron 35.0%
!!! CTCTAGTTTTTAAGTGTAGC+AGG + chr3_3:57130974-57130993 Msa0460110:intron 35.0%
AACTGTCCTGCACTAAAATA+AGG - chr3_3:57131060-57131079 None:intergenic 35.0%
! TCATTTGACAGCAGTTTTTG+AGG + chr3_3:57131103-57131122 Msa0460110:intron 35.0%
! CTGCCTTTTTATGGTGTAAA+GGG + chr3_3:57131137-57131156 Msa0460110:intron 35.0%
! TGCCTTTTTATGGTGTAAAG+GGG + chr3_3:57131138-57131157 Msa0460110:intron 35.0%
TTCCCCTTTACACCATAAAA+AGG - chr3_3:57131143-57131162 None:intergenic 35.0%
TGGTGTAAAGGGGAAAATTT+AGG + chr3_3:57131148-57131167 Msa0460110:intron 35.0%
GAAACAGCTCAAAATAACCT+AGG - chr3_3:57131259-57131278 None:intergenic 35.0%
AATCGAAAACGAGACAAATC+CGG - chr3_3:57131405-57131424 None:intergenic 35.0%
! GATTTGTCTCGTTTTCGATT+TGG + chr3_3:57131405-57131424 Msa0460110:intron 35.0%
CAACGAGATTCTATATTGAC+TGG + chr3_3:57131498-57131517 Msa0460110:intron 35.0%
AACACAAGTCTCACATTGAA+TGG + chr3_3:57131575-57131594 Msa0460110:intron 35.0%
ACCTATAAGTTAGCTGTGTA+AGG + chr3_3:57131830-57131849 Msa0460110:intron 35.0%
TCCTTACACAGCTAACTTAT+AGG - chr3_3:57131834-57131853 None:intergenic 35.0%
TATAAGTTAGCTGTGTAAGG+AGG + chr3_3:57131833-57131852 Msa0460110:intron 35.0%
TGTATTGTCTCTGTTACAGA+AGG - chr3_3:57132004-57132023 None:intergenic 35.0%
GCCTATAATAGGTGTTAAAG+GGG + chr3_3:57132119-57132138 Msa0460110:intron 35.0%
ACCCCTTTAACACCTATTAT+AGG - chr3_3:57132123-57132142 None:intergenic 35.0%
! CCCTTTCTTCAATTGATAGT+TGG - chr3_3:57132214-57132233 None:intergenic 35.0%
TAAGAAGCCAGAGTTATGAT+AGG + chr3_3:57132288-57132307 Msa0460110:CDS 35.0%
TGCTAAACCTATCATAACTC+TGG - chr3_3:57132298-57132317 None:intergenic 35.0%
TTGAAACAAATAGTGTGGCA+TGG + chr3_3:57132466-57132485 Msa0460110:intron 35.0%
TTACGCTCACATTCAATGAA+AGG - chr3_3:57132503-57132522 None:intergenic 35.0%
! GGTTTTTACTAGGTGGAAAA+TGG + chr3_3:57132612-57132631 Msa0460110:intron 35.0%
! ACCCTTCAGTTCTCTTTTAA+TGG + chr3_3:57132643-57132662 Msa0460110:intron 35.0%
GCCATTAAAAGAGAACTGAA+GGG - chr3_3:57132647-57132666 None:intergenic 35.0%
AGCCATTAAAAGAGAACTGA+AGG - chr3_3:57132648-57132667 None:intergenic 35.0%
! CACTGCAGAAACCTTTTTAA+TGG + chr3_3:57132682-57132701 Msa0460110:intron 35.0%
! TTCACTGCAAAACTTTTCAC+GGG + chr3_3:57132747-57132766 Msa0460110:intron 35.0%
TCAACTTCAGTCTCAACTAT+TGG + chr3_3:57132803-57132822 Msa0460110:intron 35.0%
! AAGCTACGCTATGTAGTTTT+TGG + chr3_3:57133105-57133124 Msa0460110:intron 35.0%
! TATCCTTGTTTGCTCAGTAA+TGG + chr3_3:57133249-57133268 Msa0460110:intron 35.0%
AACATCGCATTGTTAAAACG+TGG - chr3_3:57133280-57133299 None:intergenic 35.0%
CTACTGCATTCACAAGTAAT+TGG - chr3_3:57133515-57133534 None:intergenic 35.0%
! TGAAGCATTCATATAGCGTA+TGG + chr3_3:57133697-57133716 Msa0460110:intron 35.0%
TAGCGTATGGTTCATTGTTA+AGG + chr3_3:57133710-57133729 Msa0460110:intron 35.0%
AGCGTATGGTTCATTGTTAA+GGG + chr3_3:57133711-57133730 Msa0460110:intron 35.0%
TATGGTTCTCTCTCTCTAAT+TGG - chr3_3:57133811-57133830 None:intergenic 35.0%
ATTAGAGAGAGAGAACCATA+TGG + chr3_3:57133811-57133830 Msa0460110:intron 35.0%
GGTAATATTGAACCACCATA+TGG - chr3_3:57133829-57133848 None:intergenic 35.0%
TAGCCTTTGTGAATATCTCA+AGG - chr3_3:57133926-57133945 None:intergenic 35.0%
! ACAATATTGGTAGCTACTAG+AGG + chr3_3:57134063-57134082 Msa0460110:CDS 35.0%
ACATAAGCTACCTAACATGA+AGG + chr3_3:57134089-57134108 Msa0460110:CDS 35.0%
CATAAGCTACCTAACATGAA+GGG + chr3_3:57134090-57134109 Msa0460110:CDS 35.0%
ATAAACAAGTGGGTAATGCT+TGG + chr3_3:57134377-57134396 Msa0460110:intron 35.0%
TCATGGCAAATGAGTTTATC+TGG + chr3_3:57134583-57134602 Msa0460110:CDS 35.0%
AGAGGATGATTTAGAGGATG+AGG - chr3_3:57129548-57129567 None:intergenic 40.0%
ATCACTAGAAGGGGTAACAT+AGG - chr3_3:57129623-57129642 None:intergenic 40.0%
TGATGCTGATGCTGATGATA+AGG + chr3_3:57129663-57129682 Msa0460110:CDS 40.0%
! AAGGTTACAAATGATGGAGG+AGG + chr3_3:57129682-57129701 Msa0460110:CDS 40.0%
! AGGTTACAAATGATGGAGGA+GGG + chr3_3:57129683-57129702 Msa0460110:CDS 40.0%
TGAAGCTTGAGAACAGTAAC+TGG - chr3_3:57129784-57129803 None:intergenic 40.0%
AGTTACTGTTCTCAAGCTTC+AGG + chr3_3:57129783-57129802 Msa0460110:CDS 40.0%
GTTGGAATGTTGGATGAGAT+GGG + chr3_3:57129897-57129916 Msa0460110:CDS 40.0%
CATTACAAAGGGATCTAGCT+AGG + chr3_3:57129925-57129944 Msa0460110:CDS 40.0%
TTGCAGAAGCTGCTAATACA+CGG + chr3_3:57129949-57129968 Msa0460110:CDS 40.0%
AGCTGCTAATACACGGTATA+AGG + chr3_3:57129956-57129975 Msa0460110:CDS 40.0%
GCTAATACACGGTATAAGGA+AGG + chr3_3:57129960-57129979 Msa0460110:CDS 40.0%
CACATTTGTCAACGCGTTAT+TGG - chr3_3:57130086-57130105 None:intergenic 40.0%
ATACTTATGGACAGAAGCAG+AGG - chr3_3:57130210-57130229 None:intergenic 40.0%
CTATAGTCAACCCCACTTTA+TGG - chr3_3:57130357-57130376 None:intergenic 40.0%
! TTTTATCCAGTCTCAAGTCC+GGG - chr3_3:57130435-57130454 None:intergenic 40.0%
TGATATAGATTGTCGAGGTG+GGG + chr3_3:57130466-57130485 Msa0460110:intron 40.0%
CTGTTTATACAGGTAAGGAG+TGG + chr3_3:57130732-57130751 Msa0460110:intron 40.0%
!!! TACATTTTGGTTGGAGTCCT+TGG + chr3_3:57130766-57130785 Msa0460110:intron 40.0%
ATAACAACTAAGCCCAAAGC+AGG - chr3_3:57130831-57130850 None:intergenic 40.0%
AGAAGCAAAACACGCTGAAT+CGG - chr3_3:57130893-57130912 None:intergenic 40.0%
!!! TTTGCTTCTAGTGCTGGTTT+TGG + chr3_3:57130904-57130923 Msa0460110:intron 40.0%
!!! CAGTTTCAGTTTTGGTTCTG+CGG + chr3_3:57131075-57131094 Msa0460110:intron 40.0%
ATAAAAAGGCAGCAGAAGAC+AGG - chr3_3:57131129-57131148 None:intergenic 40.0%
! TGTCTTCTGCTGCCTTTTTA+TGG + chr3_3:57131128-57131147 Msa0460110:intron 40.0%
! GCTGCCTTTTTATGGTGTAA+AGG + chr3_3:57131136-57131155 Msa0460110:intron 40.0%
!! TAACTCCCTAGCTTTTCTGA+TGG + chr3_3:57131358-57131377 Msa0460110:intron 40.0%
!! AACTCCCTAGCTTTTCTGAT+GGG + chr3_3:57131359-57131378 Msa0460110:intron 40.0%
TTGACCCATCAGAAAAGCTA+GGG - chr3_3:57131366-57131385 None:intergenic 40.0%
ATTGACCCATCAGAAAAGCT+AGG - chr3_3:57131367-57131386 None:intergenic 40.0%
AAACGAGACAAATCCGGAAT+TGG - chr3_3:57131399-57131418 None:intergenic 40.0%
! GATTCTATATTGACTGGCGT+AGG + chr3_3:57131504-57131523 Msa0460110:intron 40.0%
TACAAAATTGACGGAAGGGT+GGG - chr3_3:57131636-57131655 None:intergenic 40.0%
TTACAAAATTGACGGAAGGG+TGG - chr3_3:57131637-57131656 None:intergenic 40.0%
!! CCAATAGTGTTGGTTTGAGT+GGG + chr3_3:57131731-57131750 Msa0460110:intron 40.0%
CATCATGGTTACTGTATAGC+AGG + chr3_3:57132037-57132056 Msa0460110:CDS 40.0%
ACTTCGGACTAATTAGGAGA+AGG - chr3_3:57132084-57132103 None:intergenic 40.0%
! ACCTTGATGACAATCTTTGC+AGG + chr3_3:57132145-57132164 Msa0460110:intron 40.0%
ACCTGCAAAGATTGTCATCA+AGG - chr3_3:57132149-57132168 None:intergenic 40.0%
! TTGATGACAATCTTTGCAGG+TGG + chr3_3:57132148-57132167 Msa0460110:intron 40.0%
CTTTGCAGGTGGATCTTAAA+AGG + chr3_3:57132159-57132178 Msa0460110:intron 40.0%
TAGTAAAAACCTCACGAGAG+AGG - chr3_3:57132603-57132622 None:intergenic 40.0%
! TCTCTCGTGAGGTTTTTACT+AGG + chr3_3:57132602-57132621 Msa0460110:intron 40.0%
TAAAAGAGAACTGAAGGGTG+AGG - chr3_3:57132642-57132661 None:intergenic 40.0%
AAAAAGAGAAACCTCGCAGT+GGG + chr3_3:57132946-57132965 Msa0460110:CDS 40.0%
GTTCGACAACAAGTACATAG+TGG + chr3_3:57132968-57132987 Msa0460110:CDS 40.0%
!! AAAATCATGTTGGCTCACCA+TGG + chr3_3:57133128-57133147 Msa0460110:intron 40.0%
GATCCATTACTGAGCAAACA+AGG - chr3_3:57133255-57133274 None:intergenic 40.0%
TAACAATGCGATGTTGCAAG+TGG + chr3_3:57133285-57133304 Msa0460110:intron 40.0%
! GCATTCAATCGATTCATGCA+TGG - chr3_3:57133404-57133423 None:intergenic 40.0%
TGTCTGCATTTGAAAGCAGT+AGG + chr3_3:57133750-57133769 Msa0460110:intron 40.0%
GTCTGCATTTGAAAGCAGTA+GGG + chr3_3:57133751-57133770 Msa0460110:intron 40.0%
ATTTGAAAGCAGTAGGGTCA+AGG + chr3_3:57133757-57133776 Msa0460110:intron 40.0%
GAAGGGAGCTGAAGATTTAA+AGG + chr3_3:57134107-57134126 Msa0460110:CDS 40.0%
AGCTTAAATCCCTTCTCTAC+TGG + chr3_3:57134142-57134161 Msa0460110:CDS 40.0%
TAGATCTCTCCAGTAGAGAA+GGG - chr3_3:57134154-57134173 None:intergenic 40.0%
ATAGATCTCTCCAGTAGAGA+AGG - chr3_3:57134155-57134174 None:intergenic 40.0%
ACCTTGAAATTCTTTCAGGC+TGG + chr3_3:57134253-57134272 Msa0460110:intron 40.0%
ACCAGCCTGAAAGAATTTCA+AGG - chr3_3:57134257-57134276 None:intergenic 40.0%
AGTTTACTGAAGACTGTTGC+TGG + chr3_3:57134610-57134629 Msa0460110:CDS 40.0%
AGGAGGCTGAAACTGAGTTA+AGG - chr3_3:57129483-57129502 None:intergenic 45.0%
TGATGTTGCACCCATACACT+TGG - chr3_3:57129598-57129617 None:intergenic 45.0%
AGCATCAGCATCACTAGAAG+GGG - chr3_3:57129632-57129651 None:intergenic 45.0%
CAGCATCAGCATCACTAGAA+GGG - chr3_3:57129633-57129652 None:intergenic 45.0%
TCAGCATCAGCATCACTAGA+AGG - chr3_3:57129634-57129653 None:intergenic 45.0%
! GGTTACAAATGATGGAGGAG+GGG + chr3_3:57129684-57129703 Msa0460110:CDS 45.0%
GGTTGGAATGTTGGATGAGA+TGG + chr3_3:57129896-57129915 Msa0460110:intron 45.0%
! ACACAACCTCTCCTTTTACC+CGG + chr3_3:57130414-57130433 Msa0460110:intron 45.0%
ATAGATTGTTGAGGTGGGGT+AGG + chr3_3:57130516-57130535 Msa0460110:intron 45.0%
GGAAGGGAATCTGGCTAATT+TGG + chr3_3:57130556-57130575 Msa0460110:intron 45.0%
TGTCATGCAGATGGTTTGAG+TGG + chr3_3:57130658-57130677 Msa0460110:intron 45.0%
ATGCAGATGGTTTGAGTGGA+GGG + chr3_3:57130662-57130681 Msa0460110:intron 45.0%
CTCACTGCTTTCTCTATGAG+TGG + chr3_3:57130692-57130711 Msa0460110:CDS 45.0%
ACTGCTTTCTCTATGAGTGG+AGG + chr3_3:57130695-57130714 Msa0460110:CDS 45.0%
CTTTCTCTATGAGTGGAGGT+GGG + chr3_3:57130699-57130718 Msa0460110:CDS 45.0%
!!! GTAGCTGTTTTTTCGGATGC+AGG + chr3_3:57130938-57130957 Msa0460110:intron 45.0%
GCACTAAAATAAGGCCCCAA+CGG - chr3_3:57131051-57131070 None:intergenic 45.0%
!!! TTGGGGCCTTATTTTAGTGC+AGG + chr3_3:57131051-57131070 Msa0460110:intron 45.0%
! GTGCAGGACAGTTTCAGTTT+TGG + chr3_3:57131067-57131086 Msa0460110:intron 45.0%
TGAACATCAACTCTAGCAGC+AGG - chr3_3:57131186-57131205 None:intergenic 45.0%
TGGTGCATTATAGTGTCCCT+AGG + chr3_3:57131239-57131258 Msa0460110:intron 45.0%
!! GCCAATAGTGTTGGTTTGAG+TGG + chr3_3:57131730-57131749 Msa0460110:intron 45.0%
CCCACTCAAACCAACACTAT+TGG - chr3_3:57131734-57131753 None:intergenic 45.0%
GATCTTAAAAGGAGCCAGGA+GGG + chr3_3:57132170-57132189 Msa0460110:CDS 45.0%
CATACAGAAATGGGGTGACA+TGG - chr3_3:57132440-57132459 None:intergenic 45.0%
CATGTCACCCCATTTCTGTA+TGG + chr3_3:57132438-57132457 Msa0460110:intron 45.0%
! CTCGTGAGGTTTTTACTAGG+TGG + chr3_3:57132605-57132624 Msa0460110:intron 45.0%
GAAAAAGAGAAACCTCGCAG+TGG + chr3_3:57132945-57132964 Msa0460110:CDS 45.0%
TTTGGTATCTGCTGGAACCA+TGG - chr3_3:57133148-57133167 None:intergenic 45.0%
TGTGCATGTTTGGTATCTGC+TGG - chr3_3:57133156-57133175 None:intergenic 45.0%
AGAGAGAGAGAACCATATGG+TGG + chr3_3:57133814-57133833 Msa0460110:intron 45.0%
TCTTCAGCTCCCTTCATGTT+AGG - chr3_3:57134102-57134121 None:intergenic 45.0%
GAAATTCTTTCAGGCTGGTG+AGG + chr3_3:57134258-57134277 Msa0460110:intron 45.0%
! TTCAGGCTGGTGAGGTATTA+TGG + chr3_3:57134266-57134285 Msa0460110:intron 45.0%
ATTATGGACCCCACAGAAAG+TGG + chr3_3:57134282-57134301 Msa0460110:CDS 45.0%
! TCATAGACTTGGCTAGCTGA+GGG - chr3_3:57134345-57134364 None:intergenic 45.0%
! TTCATAGACTTGGCTAGCTG+AGG - chr3_3:57134346-57134365 None:intergenic 45.0%
! TCTGGAATGAGTTGCAGACA+AGG + chr3_3:57134545-57134564 Msa0460110:CDS 45.0%
!! AGTTGCAGACAAGGTGTTGT+GGG + chr3_3:57134554-57134573 Msa0460110:CDS 45.0%
TCATTGAGCCAAGCAAGTGA+TGG - chr3_3:57134662-57134681 None:intergenic 45.0%
AACTCAGTTTCAGCCTCCTC+AGG + chr3_3:57129484-57129503 Msa0460110:CDS 50.0%
!! GGCGTGTGCTGTTTATTGAG+AGG + chr3_3:57129981-57130000 Msa0460110:CDS 50.0%
TCAAGTCCGGGTAAAAGGAG+AGG - chr3_3:57130423-57130442 None:intergenic 50.0%
CAGTCTCAAGTCCGGGTAAA+AGG - chr3_3:57130428-57130447 None:intergenic 50.0%
! CTTTTACCCGGACTTGAGAC+TGG + chr3_3:57130426-57130445 Msa0460110:intron 50.0%
CATGCAGATGGTTTGAGTGG+AGG + chr3_3:57130661-57130680 Msa0460110:intron 50.0%
GCTTTCTCTATGAGTGGAGG+TGG + chr3_3:57130698-57130717 Msa0460110:CDS 50.0%
ATACAGGTAAGGAGTGGGTG+AGG + chr3_3:57130738-57130757 Msa0460110:intron 50.0%
!! GAGGAGGGGTACATTTTGGT+TGG + chr3_3:57130757-57130776 Msa0460110:intron 50.0%
! GTCCTTGGCGAAGAGTTTTC+TGG + chr3_3:57130781-57130800 Msa0460110:intron 50.0%
GACCAGAAAACTCTTCGCCA+AGG - chr3_3:57130786-57130805 None:intergenic 50.0%
! CGGAAGCTTTGTGTCAGCAT+CGG - chr3_3:57130873-57130892 None:intergenic 50.0%
! GCGTGTTTTGCTTCTAGTGC+TGG + chr3_3:57130898-57130917 Msa0460110:intron 50.0%
TGTTCACACTGTAGTGCCGT+TGG + chr3_3:57131032-57131051 Msa0460110:intron 50.0%
! GTTCACACTGTAGTGCCGTT+GGG + chr3_3:57131033-57131052 Msa0460110:intron 50.0%
! TTCACACTGTAGTGCCGTTG+GGG + chr3_3:57131034-57131053 Msa0460110:intron 50.0%
ACATCAACTCTAGCAGCAGG+CGG - chr3_3:57131183-57131202 None:intergenic 50.0%
GATGCAGAGTTGTGTGCTTC+TGG + chr3_3:57131206-57131225 Msa0460110:CDS 50.0%
AACACTATTGGCGTGCTGTG+CGG - chr3_3:57131722-57131741 None:intergenic 50.0%
!! GTTGGTTTGAGTGGGTGCAT+TGG + chr3_3:57131739-57131758 Msa0460110:intron 50.0%
GGTGGATCTTAAAAGGAGCC+AGG + chr3_3:57132166-57132185 Msa0460110:intron 50.0%
GGATCTTAAAAGGAGCCAGG+AGG + chr3_3:57132169-57132188 Msa0460110:CDS 50.0%
! AGCATTTTTCTCCACCCTCC+TGG - chr3_3:57132187-57132206 None:intergenic 50.0%
! GGTGTCATCCACTTTCTGTG+GGG - chr3_3:57134293-57134312 None:intergenic 50.0%
! GGGTGTCATCCACTTTCTGT+GGG - chr3_3:57134294-57134313 None:intergenic 50.0%
! AGGGTGTCATCCACTTTCTG+TGG - chr3_3:57134295-57134314 None:intergenic 50.0%
GTGGATGACACCCTTTCAGA+TGG + chr3_3:57134301-57134320 Msa0460110:CDS 50.0%
!! GAGTTGCAGACAAGGTGTTG+TGG + chr3_3:57134553-57134572 Msa0460110:CDS 50.0%
!! GTTGCAGACAAGGTGTTGTG+GGG + chr3_3:57134555-57134574 Msa0460110:CDS 50.0%
! GGTGTTGTGGGGAGTTATCA+TGG + chr3_3:57134566-57134585 Msa0460110:CDS 50.0%
TCAGTTTCAGCCTCCTCAGG+AGG + chr3_3:57129487-57129506 Msa0460110:CDS 55.0%
TGTTGAGGTGGGGTAGGTAG+AGG + chr3_3:57130522-57130541 Msa0460110:intron 55.0%
AGGTAAGGAGTGGGTGAGGA+GGG + chr3_3:57130742-57130761 Msa0460110:intron 55.0%
!! GGGTGAGGAGGGGTACATTT+TGG + chr3_3:57130753-57130772 Msa0460110:intron 55.0%
AGTCTGTGTGAGGCCTGCTT+TGG + chr3_3:57130815-57130834 Msa0460110:intron 55.0%
GTCTGTGTGAGGCCTGCTTT+GGG + chr3_3:57130816-57130835 Msa0460110:intron 55.0%
!! AGCTTTGTGTCAGCATCGGC+AGG - chr3_3:57130869-57130888 None:intergenic 55.0%
GTGCTTCTGGTCTGCAGCTT+TGG + chr3_3:57131219-57131238 Msa0460110:CDS 55.0%
GCACAGCACGCCAATAGTGT+TGG + chr3_3:57131721-57131740 Msa0460110:intron 55.0%
CTTAAAAGGAGCCAGGAGGG+TGG + chr3_3:57132173-57132192 Msa0460110:CDS 55.0%
GGGGTGACATGGCAAAGTAG+TGG - chr3_3:57132429-57132448 None:intergenic 55.0%
GGAACAGATCCTCTCTCGTG+AGG + chr3_3:57132591-57132610 Msa0460110:intron 55.0%
TTGTTGTCGAACCCACTGCG+AGG - chr3_3:57132960-57132979 None:intergenic 55.0%
GCAGTAGGGTCAAGGTTCCT+TGG + chr3_3:57133765-57133784 Msa0460110:intron 55.0%
CGAGTCGACCATCACTTGCT+TGG + chr3_3:57134651-57134670 Msa0460110:CDS 55.0%
!! AGCCTCCTCAGGAGGTGTTG+CGG + chr3_3:57129495-57129514 Msa0460110:CDS 60.0%
CAGGTAAGGAGTGGGTGAGG+AGG + chr3_3:57130741-57130760 Msa0460110:intron 60.0%
GGTAAGGAGTGGGTGAGGAG+GGG + chr3_3:57130743-57130762 Msa0460110:intron 60.0%
CGCTGCTGTCAGTCTGTGTG+AGG + chr3_3:57130805-57130824 Msa0460110:intron 60.0%
!! GCCTCCTCAGGAGGTGTTGC+GGG + chr3_3:57129496-57129515 Msa0460110:CDS 65.0%
TCCCGCAACACCTCCTGAGG+AGG - chr3_3:57129500-57129519 None:intergenic 65.0%
!! TCCTCAGGAGGTGTTGCGGG+AGG + chr3_3:57129499-57129518 Msa0460110:CDS 65.0%
!! CCTCAGGAGGTGTTGCGGGA+GGG + chr3_3:57129500-57129519 Msa0460110:CDS 65.0%
CCCTCCCGCAACACCTCCTG+AGG - chr3_3:57129503-57129522 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 57129406 57134681 57129406 ID=Msa0460110;Name=Msa0460110
chr3_3 mRNA 57129406 57134681 57129406 ID=Msa0460110-mRNA-1;Parent=Msa0460110;Name=Msa0460110-mRNA-1;_AED=0.18;_eAED=0.23;_QI=0|0.55|0.5|0.8|1|1|10|0|446
chr3_3 exon 57129406 57129804 57129406 ID=Msa0460110-mRNA-1:exon:11573;Parent=Msa0460110-mRNA-1
chr3_3 exon 57129897 57130002 57129897 ID=Msa0460110-mRNA-1:exon:11574;Parent=Msa0460110-mRNA-1
chr3_3 exon 57130668 57130743 57130668 ID=Msa0460110-mRNA-1:exon:11575;Parent=Msa0460110-mRNA-1
chr3_3 exon 57131158 57131240 57131158 ID=Msa0460110-mRNA-1:exon:11576;Parent=Msa0460110-mRNA-1
chr3_3 exon 57132014 57132069 57132014 ID=Msa0460110-mRNA-1:exon:11577;Parent=Msa0460110-mRNA-1
chr3_3 exon 57132167 57132331 57132167 ID=Msa0460110-mRNA-1:exon:11578;Parent=Msa0460110-mRNA-1
chr3_3 exon 57132906 57132989 57132906 ID=Msa0460110-mRNA-1:exon:11579;Parent=Msa0460110-mRNA-1
chr3_3 exon 57134060 57134176 57134060 ID=Msa0460110-mRNA-1:exon:11580;Parent=Msa0460110-mRNA-1
chr3_3 exon 57134271 57134388 57134271 ID=Msa0460110-mRNA-1:exon:11581;Parent=Msa0460110-mRNA-1
chr3_3 exon 57134545 57134681 57134545 ID=Msa0460110-mRNA-1:exon:11582;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57129406 57129804 57129406 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57129897 57130002 57129897 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57130668 57130743 57130668 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57131158 57131240 57131158 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57132014 57132069 57132014 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57132167 57132331 57132167 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57132906 57132989 57132906 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57134060 57134176 57134060 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57134271 57134388 57134271 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
chr3_3 CDS 57134545 57134681 57134545 ID=Msa0460110-mRNA-1:cds;Parent=Msa0460110-mRNA-1
Gene Sequence

>Msa0460110

ATGGTTTTTTCAAGAAAACACGTTACGAGTATCATTGCTTTGTCACTGCTTGTGTTGTTTTCGTTAACATGGAACCTTAACTCAGTTTCAGCCTCCTCAGGAGGTGTTGCGGGAGGGAGTTTCTTCAAATCAGATTCTTCCTCATCCTCTAAATCATCCTCTGAATCATTCACAACTTATTCAAATTCTCCAAGTGTATGGGTGCAACATCATACCTATGTTACCCCTTCTAGTGATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGATAAGGTTACAAATGATGGAGGAGGGGTCGTGTTTTTGTTCATTGTTGGCATAATCGGTATCATTTATGTTGTACGTCGTTGTACAGAAAACAATGATAATCCAGTTACTGTTCTCAAGCTTCAGGTTGGAATGTTGGATGAGATGGGATGTACATTACAAAGGGATCTAGCTAGGATTGCAGAAGCTGCTAATACACGGTATAAGGAAGGCGTGTGCTGTTTATTGAGAGATGGTTTGAGTGGAGGGAAGATTTCTCACTGCTTTCTCTATGAGTGGAGGTGGGATCCTATTAACTGTTTATACAGGGGAAAATTTAGGATTATGGTGCCGCCTGCTGCTAGAGTTGATGTTCAGATGCAGAGTTGTGTGCTTCTGGTCTGCAGCTTTGAGACAATACAAACTTTGGATAAACATCATGGTTACTGTATAGCAGGATATTCATCTGTGGATCTTAAAAGGAGCCAGGAGGGTGGAGAAAAATGCTATAACCAACTATCAATTGAAGAAAGGGAAAAATTTGATGGAGAGACATTAGTTAACTTGAGCAACAACAATAAGACACGTATAAGAAGCCAGAGTTATGATAGGTTTAGCAATGAATATTCCACGTTTGATGTAAAAAAGAGTTCTGAAGAAACCGAGAAATTTGAAAAAGAGAAACCTCGCAGTGGGTTCGACAACAAGTACATAGTGGTAACAATATTGGTAGCTACTAGAGGAGCACATAAGCTACCTAACATGAAGGGAGCTGAAGATTTAAAGGAAGCTTTGCAAAAGCTTAAATCCCTTCTCTACTGGAGAGATCTATTAGCTGGTGAGGTATTATGGACCCCACAGAAAGTGGATGACACCCTTTCAGATGGAAAACTACTTAAAGATTACCCTCAGCTAGCCAAGTCTATGAAATATGAAATGAATAAACAAGTGGTCTGGAATGAGTTGCAGACAAGGTGTTGTGGGGAGTTATCATGGCAAATGAGTTTATCTGGAATGAGTTTACTGAAGACTGTTGCTGGTGTTGAGCTCTTTTCGAGCGAGTCGACCATCACTTGCTTGGCTCAATGA

Protein sequence

>Msa0460110

MVFSRKHVTSIIALSLLVLFSLTWNLNSVSASSGGVAGGSFFKSDSSSSSKSSSESFTTYSNSPSVWVQHHTYVTPSSDADADADADADADDKVTNDGGGVVFLFIVGIIGIIYVVRRCTENNDNPVTVLKLQVGMLDEMGCTLQRDLARIAEAANTRYKEGVCCLLRDGLSGGKISHCFLYEWRWDPINCLYRGKFRIMVPPAARVDVQMQSCVLLVCSFETIQTLDKHHGYCIAGYSSVDLKRSQEGGEKCYNQLSIEEREKFDGETLVNLSNNNKTRIRSQSYDRFSNEYSTFDVKKSSEETEKFEKEKPRSGFDNKYIVVTILVATRGAHKLPNMKGAEDLKEALQKLKSLLYWRDLLAGEVLWTPQKVDDTLSDGKLLKDYPQLAKSMKYEMNKQVVWNELQTRCCGELSWQMSLSGMSLLKTVAGVELFSSESTITCLAQ*