AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522990 MtrunA17_Chr3g0142941 96.748 369 11 1 1 368 1 369 0.0 726
Msa0522990 MtrunA17_Chr1g0156931 69.972 363 105 3 5 366 1 360 0.0 530
Msa0522990 MtrunA17_Chr1g0156891 65.029 346 120 1 19 363 16 361 5.47e-174 488
Msa0522990 MtrunA17_Chr3g0142921 64.225 355 123 2 16 366 3 357 1.36e-169 477
Msa0522990 MtrunA17_Chr1g0156901 60.665 361 140 1 8 366 10 370 2.23e-169 477
Msa0522990 MtrunA17_Chr1g0156911 60.345 348 137 1 16 363 8 354 9.46e-164 462
Msa0522990 MtrunA17_Chr1g0156921 58.571 350 144 1 18 366 14 363 3.82e-157 446
Msa0522990 MtrunA17_Chr5g0405821 54.046 346 156 3 17 359 14 359 4.94e-132 382
Msa0522990 MtrunA17_Chr8g0371491 51.906 341 163 1 24 363 14 354 7.65e-132 381
Msa0522990 MtrunA17_Chr5g0405831 52.464 345 162 2 17 359 14 358 6.37e-128 371
Msa0522990 MtrunA17_Chr8g0371481 51.603 343 162 3 23 361 16 358 9.97e-122 355
Msa0522990 MtrunA17_Chr8g0371471 51.170 342 164 2 23 361 16 357 5.63e-121 353
Msa0522990 MtrunA17_Chr5g0438621 44.548 321 173 2 44 361 28 346 2.95e-99 298
Msa0522990 MtrunA17_Chr5g0438631 43.302 321 178 3 44 361 26 345 3.09e-92 280
Msa0522990 MtrunA17_Chr1g0157001 42.812 313 176 2 51 362 41 351 4.26e-92 280
Msa0522990 MtrunA17_Chr5g0432101 44.136 324 174 3 46 362 33 356 1.90e-89 273
Msa0522990 MtrunA17_Chr2g0283191 43.119 327 176 4 44 360 36 362 4.96e-88 270
Msa0522990 MtrunA17_Chr4g0046151 41.640 317 177 2 46 354 36 352 1.41e-87 268
Msa0522990 MtrunA17_Chr3g0105401 36.286 350 221 2 19 366 1 350 8.65e-87 266
Msa0522990 MtrunA17_Chr2g0320671 41.880 351 192 4 6 355 1 340 8.56e-86 263
Msa0522990 MtrunA17_Chr3g0120861 43.137 306 173 1 44 348 36 341 1.94e-84 260
Msa0522990 MtrunA17_Chr8g0341001 40.476 336 196 3 22 355 10 343 2.80e-84 259
Msa0522990 MtrunA17_Chr5g0438641 38.920 352 205 3 17 363 8 354 2.38e-82 255
Msa0522990 MtrunA17_Chr2g0330781 40.187 321 190 2 41 359 26 346 4.03e-80 249
Msa0522990 MtrunA17_Chr5g0437421 40.312 320 181 4 44 355 30 347 7.65e-80 248
Msa0522990 MtrunA17_Chr4g0027521 36.875 320 198 2 44 359 25 344 4.62e-65 210
Msa0522990 MtrunA17_Chr2g0285061 35.161 310 194 5 44 349 30 336 3.29e-63 206
Msa0522990 MtrunA17_Chr3g0086641 32.537 335 217 6 17 348 12 340 1.12e-58 194
Msa0522990 MtrunA17_Chr7g0275021 31.476 359 230 8 6 359 1 348 1.12e-58 194
Msa0522990 MtrunA17_Chr7g0275011 33.742 326 201 6 42 359 30 348 1.91e-58 194
Msa0522990 MtrunA17_Chr1g0182811 32.143 364 216 8 1 355 4 345 2.12e-58 193
Msa0522990 MtrunA17_Chr8g0380041 33.871 310 197 5 44 349 29 334 2.73e-58 193
Msa0522990 MtrunA17_Chr3g0077571 35.691 311 190 7 43 350 27 330 3.14e-58 192
Msa0522990 MtrunA17_Chr4g0008851 33.642 324 198 6 42 355 28 344 1.02e-57 192
Msa0522990 MtrunA17_Chr1g0189901 33.333 315 201 5 46 355 31 341 8.65e-57 189
Msa0522990 MtrunA17_Chr7g0274991 32.092 349 219 7 15 355 5 343 8.91e-57 189
Msa0522990 MtrunA17_Chr3g0077581 32.822 326 205 9 32 348 22 342 1.44e-54 183
Msa0522990 MtrunA17_Chr6g0463261 66.393 122 41 0 98 219 3 124 1.56e-54 175
Msa0522990 MtrunA17_Chr7g0275001 32.602 319 207 4 46 359 25 340 1.80e-54 183
Msa0522990 MtrunA17_Chr4g0017431 30.631 333 226 4 21 350 6 336 2.48e-54 182
Msa0522990 MtrunA17_Chr5g0434621 34.740 308 186 8 50 350 29 328 6.39e-54 181
Msa0522990 MtrunA17_Chr1g0189931 33.437 323 198 6 46 359 32 346 1.19e-53 181
Msa0522990 MtrunA17_Chr3g0092131 32.915 319 206 7 50 364 27 341 1.49e-52 178
Msa0522990 MtrunA17_Chr8g0374101 31.871 342 221 7 18 350 11 349 2.47e-52 178
Msa0522990 MtrunA17_Chr6g0457921 32.602 319 205 6 47 359 30 344 6.75e-52 176
Msa0522990 MtrunA17_Chr3g0131321 30.347 346 229 5 16 356 10 348 1.25e-51 176
Msa0522990 MtrunA17_Chr2g0294301 35.093 322 193 8 37 349 26 340 2.75e-51 175
Msa0522990 MtrunA17_Chr4g0060811 32.087 321 210 7 50 366 31 347 5.07e-50 171
Msa0522990 MtrunA17_Chr1g0189891 32.500 320 200 7 46 359 29 338 1.65e-49 170
Msa0522990 MtrunA17_Chr3g0099161 32.386 352 218 8 15 355 62 404 5.13e-49 170
Msa0522990 MtrunA17_Chr4g0068441 33.234 337 211 7 18 349 13 340 2.43e-48 167
Msa0522990 MtrunA17_Chr7g0215961 29.907 321 199 6 46 359 33 334 9.44e-47 162
Msa0522990 MtrunA17_Chr2g0294311 32.508 323 194 8 45 350 31 346 1.32e-46 162
Msa0522990 MtrunA17_Chr3g0099151 32.486 354 214 10 16 355 58 400 2.03e-46 163
Msa0522990 MtrunA17_Chr3g0099231 31.988 322 201 8 44 355 26 339 1.18e-45 160
Msa0522990 MtrunA17_Chr4g0027571 38.785 214 130 1 148 360 2 215 2.91e-45 155
Msa0522990 MtrunA17_Chr5g0396511 30.968 310 207 4 51 356 51 357 1.29e-44 157
Msa0522990 MtrunA17_Chr8g0380031 32.239 335 206 8 22 352 63 380 2.63e-43 155
Msa0522990 MtrunA17_Chr2g0301641 30.791 354 224 7 17 358 14 358 2.84e-43 154
Msa0522990 MtrunA17_Chr2g0284991 32.353 340 211 11 17 349 3 330 7.27e-43 153
Msa0522990 MtrunA17_Chr8g0344941 32.390 318 203 6 46 356 41 353 2.51e-42 151
Msa0522990 MtrunA17_Chr2g0284921 32.484 314 192 8 44 350 32 332 2.42e-41 148
Msa0522990 MtrunA17_Chr3g0085881 31.847 314 188 10 44 350 31 325 4.64e-41 147
Msa0522990 MtrunA17_Chr5g0444401 30.675 326 201 8 44 355 26 340 6.39e-41 147
Msa0522990 MtrunA17_Chr8g0344931 31.132 318 202 7 46 358 37 342 2.56e-39 143
Msa0522990 MtrunA17_Chr2g0284951 31.940 335 205 12 22 349 8 326 4.33e-39 142
Msa0522990 MtrunA17_Chr5g0420811 32.733 333 194 12 24 348 15 325 4.18e-38 139
Msa0522990 MtrunA17_Chr8g0349341 31.871 342 210 11 23 352 10 340 1.09e-36 136
Msa0522990 MtrunA17_Chr7g0229591 38.049 205 121 1 15 219 5 203 2.05e-35 129
Msa0522990 MtrunA17_Chr7g0229581 45.390 141 76 1 221 360 8 148 3.28e-35 126
Msa0522990 MtrunA17_Chr8g0349321 31.962 316 194 10 46 352 37 340 1.17e-34 130
Msa0522990 MtrunA17_Chr2g0284941 30.094 319 174 11 44 351 31 311 1.05e-33 128
Msa0522990 MtrunA17_Chr3g0085231 30.294 340 206 10 17 350 10 324 3.04e-33 126
Msa0522990 MtrunA17_Chr8g0370981 28.851 409 219 13 23 368 19 418 3.28e-33 128
Msa0522990 MtrunA17_Chr2g0285001 30.530 321 205 12 44 358 31 339 9.20e-33 125
Msa0522990 MtrunA17_Chr8g0370951 28.125 352 213 12 21 348 4 339 9.90e-32 123
Msa0522990 MtrunA17_Chr8g0349301 31.457 302 188 10 23 317 10 299 4.11e-31 120
Msa0522990 MtrunA17_Chr1g0160011 30.194 361 212 14 19 350 9 358 2.35e-30 119
Msa0522990 MtrunA17_Chr8g0349331 28.704 324 178 8 41 352 26 308 4.35e-29 115
Msa0522990 MtrunA17_Chr1g0160031 29.191 346 205 13 41 359 34 366 2.30e-28 114
Msa0522990 MtrunA17_Chr4g0018571 38.462 156 95 1 209 363 19 174 9.68e-28 107
Msa0522990 MtrunA17_Chr2g0301581 31.092 357 202 14 18 355 9 340 1.19e-27 111
Msa0522990 MtrunA17_Chr2g0283481 29.692 357 220 13 16 352 21 366 1.67e-27 112
Msa0522990 MtrunA17_Chr6g0469511 48.214 112 58 0 44 155 28 139 6.77e-27 103
Msa0522990 MtrunA17_Chr2g0283511 30.556 324 196 13 51 352 36 352 6.88e-27 110
Msa0522990 MtrunA17_Chr1g0159991 29.235 366 214 15 19 352 6 358 1.27e-26 109
Msa0522990 MtrunA17_Chr7g0273101 27.794 349 209 12 41 359 24 359 1.63e-26 108
Msa0522990 MtrunA17_Chr3g0104821 29.290 338 198 15 46 356 44 367 4.27e-26 107
Msa0522990 MtrunA17_Chr2g0301541 30.532 357 204 14 18 355 9 340 6.99e-26 106
Msa0522990 MtrunA17_Chr7g0254461 26.064 376 233 13 15 359 15 376 1.67e-25 106
Msa0522990 MtrunA17_Chr6g0469521 43.802 121 67 1 221 340 32 152 5.81e-25 99.4
Msa0522990 MtrunA17_Chr1g0191461 26.301 346 221 9 41 361 26 362 1.01e-24 103
Msa0522990 MtrunA17_Chr4g0027561 46.721 122 59 1 16 137 6 121 1.33e-24 98.2
Msa0522990 MtrunA17_Chr8g0370961 27.311 238 156 6 140 366 11 242 2.70e-24 100
Msa0522990 MtrunA17_Chr6g0459921 33.023 215 132 5 144 351 127 336 5.48e-24 101
Msa0522990 MtrunA17_Chr1g0159981 27.855 359 221 14 18 349 18 365 1.01e-23 101
Msa0522990 MtrunA17_Chr2g0283501 29.499 339 203 15 46 359 31 358 2.64e-23 99.8
Msa0522990 MtrunA17_Chr1g0159971 26.400 375 224 15 13 352 12 369 3.25e-23 99.8
Msa0522990 MtrunA17_Chr7g0271551 27.976 336 201 15 45 359 34 349 3.79e-23 99.4
Msa0522990 MtrunA17_Chr1g0160101 28.235 340 193 13 45 350 41 363 4.17e-23 99.4
Msa0522990 MtrunA17_Chr6g0455661 32.093 215 134 5 144 351 238 447 4.61e-23 100
Msa0522990 MtrunA17_Chr6g0455661 38.400 125 66 4 24 143 6 124 1.86e-14 74.3
Msa0522990 MtrunA17_Chr7g0275291 27.105 380 222 13 13 359 3 360 1.28e-22 97.8
Msa0522990 MtrunA17_Chr8g0381581 25.706 354 218 14 41 362 35 375 2.61e-22 97.1
Msa0522990 MtrunA17_Chr3g0112821 26.994 326 212 12 46 355 30 345 3.47e-21 93.6
Msa0522990 MtrunA17_Chr6g0450731 26.667 360 227 13 15 356 2 342 3.70e-21 93.6
Msa0522990 MtrunA17_Chr4g0027581 35.135 148 73 2 236 360 41 188 8.42e-20 86.7
Msa0522990 MtrunA17_Chr2g0317271 26.685 356 224 14 18 356 3 338 8.81e-20 89.4
Msa0522990 MtrunA17_Chr2g0301551 30.389 283 159 11 92 355 33 296 1.38e-19 88.2
Msa0522990 MtrunA17_Chr6g0450701 25.858 379 230 12 15 359 2 363 1.99e-19 88.6
Msa0522990 MtrunA17_Chr7g0226941 25.926 351 215 12 40 359 27 363 2.12e-19 88.6
Msa0522990 MtrunA17_Chr1g0198351 25.444 338 215 12 41 366 38 350 2.15e-19 88.2
Msa0522990 MtrunA17_Chr3g0093031 25.620 363 230 16 18 355 3 350 2.83e-19 88.2
Msa0522990 MtrunA17_Chr2g0317261 27.528 356 221 15 18 356 3 338 3.21e-19 87.8
Msa0522990 MtrunA17_Chr0c01g0489571 27.273 352 219 14 22 356 7 338 6.70e-19 87.0
Msa0522990 MtrunA17_Chr6g0450721 27.035 344 215 11 30 356 16 340 7.17e-19 87.0
Msa0522990 MtrunA17_Chr2g0301571 30.035 283 160 12 92 355 33 296 9.95e-19 85.9
Msa0522990 MtrunA17_Chr0c01g0489581 26.989 352 220 14 22 356 7 338 1.22e-18 86.3
Msa0522990 MtrunA17_Chr6g0450711 28.182 330 196 11 45 348 121 435 1.42e-18 86.7
Msa0522990 MtrunA17_Chr8g0347751 26.437 348 206 14 46 359 36 367 2.90e-18 85.5
Msa0522990 MtrunA17_Chr1g0189921 47.126 87 45 1 46 132 31 116 4.26e-17 77.8
Msa0522990 MtrunA17_Chr1g0178941 26.380 326 205 14 47 354 41 349 5.42e-17 81.3
Msa0522990 MtrunA17_Chr5g0440501 23.005 213 157 3 145 350 10 222 6.45e-17 79.7
Msa0522990 MtrunA17_Chr2g0283531 26.593 361 232 14 20 355 1 353 8.91e-17 80.9
Msa0522990 MtrunA17_Chr7g0266061 26.126 333 196 18 44 354 40 344 1.20e-16 80.5
Msa0522990 MtrunA17_Chr4g0057991 25.134 374 241 15 9 359 3 360 2.34e-16 79.7
Msa0522990 MtrunA17_Chr1g0178931 26.235 324 200 13 47 354 38 338 5.07e-16 78.6
Msa0522990 MtrunA17_Chr2g0301591 29.739 306 165 12 18 304 9 283 1.28e-15 76.3
Msa0522990 MtrunA17_Chr5g0432081 50.000 62 27 1 305 362 10 71 1.38e-15 71.2
Msa0522990 MtrunA17_Chr3g0112691 24.798 371 229 18 18 359 3 352 4.41e-15 75.9
Msa0522990 MtrunA17_Chr2g0321991 43.333 90 49 2 44 132 31 119 5.13e-15 71.2
Msa0522990 MtrunA17_Chr8g0370971 41.304 92 50 1 45 132 37 128 8.34e-14 68.9
Msa0522990 MtrunA17_Chr7g0228261 41.538 65 38 0 295 359 10 74 1.24e-13 66.2
Msa0522990 MtrunA17_Chr3g0104831 26.117 291 175 14 94 356 8 286 1.94e-13 70.5
Msa0522990 MtrunA17_Chr4g0018561 64.583 48 17 0 44 91 28 75 5.70e-13 64.7
Msa0522990 MtrunA17_Chr2g0308201 49.367 79 31 2 19 97 16 85 9.12e-13 63.9
Msa0522990 MtrunA17_Chr3g0096551 25.926 351 201 15 46 355 29 361 1.91e-12 67.8
Msa0522990 MtrunA17_Chr1g0189911 30.303 99 69 0 261 359 30 128 2.72e-12 63.9
Msa0522990 MtrunA17_Chr1g0198381 23.853 327 204 13 47 354 3 303 4.87e-12 66.2
Msa0522990 MtrunA17_Chr8g0339251 24.036 337 219 11 23 339 4 323 2.55e-11 64.3
Msa0522990 MtrunA17_Chr3g0104801 33.803 142 81 5 46 180 44 179 5.52e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522990 AT1G75900.1 59.130 345 139 2 23 366 20 363 2.49e-152 434
Msa0522990 AT1G75880.2 53.571 364 165 2 7 366 10 373 7.47e-138 397
Msa0522990 AT1G75880.1 53.699 365 164 3 7 366 10 374 1.14e-136 394
Msa0522990 AT1G75890.2 52.035 344 163 2 22 363 23 366 2.37e-133 385
Msa0522990 AT1G75890.3 52.035 344 163 2 22 363 52 395 3.10e-133 386
Msa0522990 AT5G42170.1 54.217 332 148 2 36 366 40 368 1.09e-131 381
Msa0522990 AT3G14820.1 54.467 347 153 3 17 362 3 345 6.32e-130 376
Msa0522990 AT1G75890.1 50.140 357 163 3 22 363 23 379 7.43e-130 377
Msa0522990 AT1G59406.1 52.000 350 160 6 19 366 5 348 3.46e-124 362
Msa0522990 AT1G59030.1 52.000 350 160 6 19 366 5 348 3.46e-124 362
Msa0522990 AT1G58725.1 52.000 350 160 6 19 366 5 348 3.46e-124 362
Msa0522990 AT1G58520.3 51.952 333 147 5 36 366 20 341 4.94e-115 338
Msa0522990 AT1G58525.1 51.952 333 147 5 36 366 20 341 4.94e-115 338
Msa0522990 AT1G20120.1 50.932 322 157 1 34 354 66 387 9.68e-114 337
Msa0522990 AT3G43570.1 48.286 350 147 5 18 366 3 319 1.42e-113 333
Msa0522990 AT1G20132.1 48.012 327 169 1 41 366 56 382 6.59e-105 314
Msa0522990 AT3G43550.1 52.577 291 129 4 16 305 4 286 4.20e-99 295
Msa0522990 AT1G73610.1 42.857 357 184 6 15 366 2 343 5.39e-95 287
Msa0522990 AT5G63170.1 47.097 310 149 4 44 351 26 322 2.93e-92 280
Msa0522990 AT5G45960.1 42.769 325 181 2 43 362 44 368 3.01e-92 281
Msa0522990 AT1G23500.1 47.152 316 152 4 41 354 30 332 8.28e-91 276
Msa0522990 AT1G06990.1 40.000 340 191 4 22 351 8 344 2.46e-89 273
Msa0522990 AT2G30310.1 40.730 356 206 4 16 368 6 359 2.24e-88 271
Msa0522990 AT2G04570.1 41.433 321 179 3 35 348 13 331 2.25e-88 270
Msa0522990 AT1G20130.2 41.420 338 184 4 41 367 179 513 1.07e-87 274
Msa0522990 AT1G20130.1 41.420 338 184 4 41 367 199 533 1.44e-87 274
Msa0522990 AT2G31540.1 39.276 359 215 3 13 368 2 360 1.75e-87 268
Msa0522990 AT2G30220.1 41.880 351 188 5 12 354 2 344 8.16e-87 266
Msa0522990 AT5G03810.1 43.087 311 175 2 44 352 28 338 2.71e-85 263
Msa0522990 AT2G24560.1 42.258 310 176 3 45 351 33 342 6.81e-85 262
Msa0522990 AT5G22810.1 43.125 320 178 2 44 359 32 351 1.33e-84 261
Msa0522990 AT2G42990.1 40.584 308 178 2 44 348 26 331 6.42e-84 259
Msa0522990 AT2G40250.1 41.337 329 184 3 40 361 30 356 1.20e-83 259
Msa0522990 AT1G58430.1 40.118 339 200 3 33 368 22 360 1.76e-83 258
Msa0522990 AT4G26790.1 39.514 329 196 3 36 362 18 345 1.81e-83 258
Msa0522990 AT4G26790.2 39.514 329 196 3 36 362 18 345 1.81e-83 258
Msa0522990 AT1G20135.1 41.401 314 171 5 43 355 26 327 1.17e-81 252
Msa0522990 AT3G16370.1 40.566 318 187 2 44 359 28 345 3.44e-81 252
Msa0522990 AT5G03820.1 41.066 319 185 2 44 359 31 349 1.59e-79 248
Msa0522990 AT5G03820.2 41.667 312 179 2 44 352 59 370 3.82e-79 248
Msa0522990 AT3G53100.1 39.812 319 191 1 44 361 27 345 1.84e-77 243
Msa0522990 AT1G75920.2 39.403 335 190 5 23 354 6 330 1.70e-74 234
Msa0522990 AT1G75920.1 37.714 350 190 6 23 354 1 340 1.78e-70 224
Msa0522990 AT5G45950.1 37.690 329 200 4 27 355 21 344 5.85e-70 223
Msa0522990 AT1G75910.1 38.170 317 184 4 41 354 23 330 8.86e-70 223
Msa0522990 AT1G75930.1 38.486 317 178 6 41 352 24 328 1.86e-62 203
Msa0522990 AT2G24560.2 40.530 264 154 3 45 305 33 296 1.81e-61 200
Msa0522990 AT1G75920.4 38.542 288 164 5 70 354 25 302 5.42e-61 199
Msa0522990 AT5G33370.1 34.066 364 215 8 11 363 2 351 2.39e-60 199
Msa0522990 AT4G28780.1 31.875 320 215 3 46 363 31 349 1.49e-59 197
Msa0522990 AT1G29670.1 32.738 336 217 6 19 350 5 335 1.17e-58 194
Msa0522990 AT1G29670.2 32.738 336 217 6 19 350 73 403 7.88e-58 194
Msa0522990 AT5G45670.1 32.239 335 217 7 20 350 6 334 1.24e-57 191
Msa0522990 AT1G71691.2 37.621 311 183 8 44 350 53 356 3.35e-57 191
Msa0522990 AT5G08460.1 33.119 311 201 5 45 349 48 357 2.45e-56 189
Msa0522990 AT4G18970.1 32.797 311 202 5 44 350 26 333 3.16e-56 188
Msa0522990 AT1G33811.1 32.464 345 217 10 19 350 3 344 3.58e-56 188
Msa0522990 AT4G18970.2 32.797 311 202 5 44 350 26 333 1.21e-55 187
Msa0522990 AT1G75920.3 34.030 335 177 6 23 354 6 299 1.33e-55 185
Msa0522990 AT5G18430.1 31.661 319 211 3 46 359 28 344 2.78e-54 183
Msa0522990 AT3G50400.1 31.105 344 228 6 16 350 4 347 4.36e-54 182
Msa0522990 AT5G15720.1 35.202 321 194 10 44 356 28 342 7.45e-54 182
Msa0522990 AT3G04290.1 31.212 330 212 6 38 359 21 343 1.81e-53 181
Msa0522990 AT5G55050.1 34.545 330 198 9 42 359 35 358 1.63e-52 179
Msa0522990 AT1G71250.1 31.231 333 220 5 25 350 16 346 1.65e-52 179
Msa0522990 AT2G23540.1 32.803 314 201 6 46 350 48 360 2.33e-52 178
Msa0522990 AT2G31550.1 38.356 219 133 2 152 368 1 219 8.88e-52 172
Msa0522990 AT1G74460.1 31.962 316 207 7 50 361 27 338 1.19e-50 173
Msa0522990 AT5G41890.1 35.202 321 181 9 50 350 35 348 1.35e-50 174
Msa0522990 AT5G37690.1 30.836 347 220 9 17 355 1 335 2.64e-50 172
Msa0522990 AT1G29660.1 30.631 333 217 7 22 350 14 336 3.91e-50 172
Msa0522990 AT5G37690.2 29.651 344 220 9 17 355 1 327 2.26e-45 159
Msa0522990 AT4G10950.2 29.712 313 209 5 44 350 69 376 2.60e-45 160
Msa0522990 AT1G71120.1 33.228 316 195 8 43 352 28 333 4.41e-45 159
Msa0522990 AT2G19010.1 34.076 314 182 11 44 350 28 323 5.41e-45 158
Msa0522990 AT2G19010.2 34.076 314 182 11 44 350 58 353 8.91e-45 158
Msa0522990 AT2G19060.1 31.737 334 198 13 44 368 28 340 6.39e-44 155
Msa0522990 AT5G33370.2 33.993 303 178 7 11 305 2 290 2.77e-43 153
Msa0522990 AT2G19050.1 30.791 354 213 13 24 368 9 339 2.83e-43 154
Msa0522990 AT1G53920.1 29.912 341 226 7 25 358 27 361 4.10e-43 154
Msa0522990 AT4G10950.1 29.712 313 205 6 44 350 69 372 1.16e-42 153
Msa0522990 AT4G30140.1 33.439 314 182 13 44 350 31 324 5.59e-38 139
Msa0522990 AT2G03980.2 33.228 316 186 12 45 348 42 344 1.68e-37 139
Msa0522990 AT2G03980.3 33.228 316 186 12 45 348 42 344 1.68e-37 139
Msa0522990 AT2G03980.1 33.228 316 186 12 45 348 42 344 1.68e-37 139
Msa0522990 AT2G03980.4 33.228 316 186 12 45 348 42 344 1.68e-37 139
Msa0522990 AT1G53940.2 30.488 328 203 10 46 358 39 356 6.22e-37 137
Msa0522990 AT1G71691.3 36.090 266 159 8 44 305 53 311 1.21e-36 135
Msa0522990 AT5G40990.1 30.745 322 210 7 46 358 37 354 2.04e-36 136
Msa0522990 AT3G14225.1 28.923 325 216 7 46 358 37 358 6.56e-36 134
Msa0522990 AT5G15720.2 33.829 269 167 8 44 305 28 292 2.22e-35 132
Msa0522990 AT3G14225.2 28.793 323 215 7 46 358 37 354 5.32e-35 132
Msa0522990 AT1G71691.1 32.432 259 165 7 96 350 3 255 5.78e-35 130
Msa0522990 AT1G54790.3 29.275 345 201 12 45 359 31 362 8.19e-34 129
Msa0522990 AT4G16230.1 38.537 205 120 4 44 244 28 230 1.08e-33 125
Msa0522990 AT5G15720.3 31.660 259 166 8 106 356 56 311 6.56e-33 125
Msa0522990 AT2G19050.2 31.273 275 170 9 24 292 9 270 1.23e-32 124
Msa0522990 AT3G05180.1 28.446 341 209 9 45 359 35 366 2.99e-31 122
Msa0522990 AT1G53990.1 27.795 331 201 12 46 358 35 345 9.75e-31 120
Msa0522990 AT1G28590.1 29.041 365 214 15 16 352 9 356 1.12e-28 115
Msa0522990 AT1G28610.2 30.484 351 187 16 44 359 29 357 2.39e-28 114
Msa0522990 AT1G28580.1 28.763 372 228 14 14 359 4 364 1.84e-27 112
Msa0522990 AT2G04020.1 35.000 220 118 8 45 252 42 248 4.42e-27 108
Msa0522990 AT2G27360.1 30.409 342 197 12 46 359 33 361 5.24e-27 110
Msa0522990 AT5G14450.1 27.322 366 227 10 22 359 17 371 7.10e-27 110
Msa0522990 AT1G54790.1 25.543 368 229 13 23 359 8 361 9.92e-27 109
Msa0522990 AT1G53940.1 31.618 272 167 9 46 308 39 300 1.48e-26 107
Msa0522990 AT2G04020.2 33.772 228 126 8 45 260 42 256 2.26e-26 107
Msa0522990 AT1G28640.1 28.190 337 210 13 46 359 35 362 2.62e-26 108
Msa0522990 AT1G28600.1 28.455 369 228 14 13 359 3 357 2.75e-25 105
Msa0522990 AT3G26430.1 29.462 353 184 15 40 350 25 354 5.31e-25 105
Msa0522990 AT4G01130.1 27.666 347 203 13 46 359 34 365 2.07e-24 103
Msa0522990 AT1G31550.2 29.204 339 195 16 46 355 36 358 2.24e-24 103
Msa0522990 AT1G56670.1 28.406 345 202 15 45 365 39 362 2.98e-24 102
Msa0522990 AT1G28670.1 28.571 336 211 11 46 359 35 363 4.89e-24 102
Msa0522990 AT1G28570.1 29.124 388 219 15 1 359 1 361 6.60e-24 102
Msa0522990 AT1G28650.1 27.095 358 232 11 24 359 14 364 7.75e-24 101
Msa0522990 AT1G09390.1 28.045 353 214 14 17 350 13 344 1.63e-23 100
Msa0522990 AT1G54030.1 27.869 305 198 9 47 350 53 336 2.23e-22 98.2
Msa0522990 AT1G31550.1 28.402 338 196 16 46 355 36 355 5.14e-22 96.7
Msa0522990 AT1G28660.1 27.807 374 227 15 15 359 3 362 8.17e-22 95.9
Msa0522990 AT1G54790.2 24.873 394 225 16 23 359 8 387 8.82e-22 96.3
Msa0522990 AT1G54020.2 26.590 346 219 13 24 359 11 331 2.91e-21 94.4
Msa0522990 AT5G45910.1 28.125 384 223 18 20 367 1 367 1.17e-20 92.4
Msa0522990 AT4G01130.3 27.915 283 165 10 110 359 3 279 1.31e-20 91.3
Msa0522990 AT1G54000.1 26.727 333 218 10 24 348 14 328 1.66e-20 92.4
Msa0522990 AT1G28660.2 27.807 374 226 16 15 359 3 361 1.71e-20 92.4
Msa0522990 AT5G03610.1 25.538 325 209 11 47 358 44 348 2.48e-20 91.7
Msa0522990 AT3G48460.1 26.289 388 223 18 8 359 1 361 2.33e-19 89.0
Msa0522990 AT1G67830.1 25.284 352 210 13 45 360 29 363 5.14e-19 87.8
Msa0522990 AT3G62280.1 29.565 345 184 18 45 359 35 350 6.49e-19 87.4
Msa0522990 AT3G27950.1 26.571 350 222 11 23 350 10 346 6.95e-19 87.4
Msa0522990 AT1G54010.1 25.000 332 225 9 24 348 14 328 9.27e-19 87.4
Msa0522990 AT4G16233.1 40.217 92 54 1 259 349 11 102 9.38e-17 76.6
Msa0522990 AT4G01130.2 27.937 315 180 14 46 332 34 329 1.13e-16 80.5
Msa0522990 AT1G56670.2 28.571 280 160 13 45 305 39 297 2.09e-15 76.3
Msa0522990 AT4G16220.1 44.944 89 47 1 44 132 28 114 4.46e-15 74.7
Msa0522990 AT1G54030.2 27.376 263 163 9 47 304 53 292 1.11e-13 71.6
Msa0522990 AT3G14210.1 26.048 334 206 15 40 358 33 340 2.16e-13 71.2
Msa0522990 AT1G54020.1 24.809 262 169 10 107 359 3 245 3.18e-12 67.0
Msa0522990 AT1G54020.5 24.809 262 169 10 107 359 3 245 3.18e-12 67.0
Msa0522990 AT1G54020.3 24.809 262 169 10 107 359 3 245 3.18e-12 67.0
Msa0522990 AT2G36325.1 26.074 326 208 12 47 360 48 352 4.06e-12 67.4
Msa0522990 AT3G14220.1 23.885 314 209 9 45 348 31 324 6.63e-12 66.6
Msa0522990 AT3G62280.2 29.670 273 138 16 45 292 35 278 5.01e-11 63.5

Find 93 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAATAATATTAAGCTATT+TGG 0.132394 3_4:+76341762 None:intergenic
ATAATTCAGAATACATATTT+TGG 0.133098 3_4:-76338793 Msa0522990:CDS
GTCAATCGACCCACATATTT+TGG 0.162844 3_4:+76338716 None:intergenic
ATCTAACTCTTTGGAGAGTT+TGG 0.221727 3_4:+76339077 None:intergenic
CTTCTGTTCACAATTGTAAT+TGG 0.235083 3_4:-76338638 Msa0522990:three_prime_UTR
AGATCGCTTGGTTTGAGATT+TGG 0.268644 3_4:+76339654 None:intergenic
GTTCCTGCACTCATAGCTTT+TGG 0.270619 3_4:-76341672 Msa0522990:CDS
GAATACATAGTGAAGCTTAA+AGG 0.291893 3_4:-76339414 Msa0522990:CDS
TGCTTCATTGTATTTCTCAT+TGG 0.293543 3_4:+76339116 None:intergenic
AATATAAATGACCCTACTAT+TGG 0.297842 3_4:+76339035 None:intergenic
CAGAGGCTCCTTTGACCATT+AGG 0.304522 3_4:+76339253 None:intergenic
TGCTTTGCTTCTGGTGCATC+TGG 0.313289 3_4:-76339618 Msa0522990:CDS
AAGTGCAATTTCCCTCCTTA+TGG 0.329907 3_4:-76341600 Msa0522990:CDS
ACTGGAGTATGCTTTGCTTC+TGG 0.338515 3_4:-76339627 Msa0522990:CDS
GTGGCTTTATTGAGTATGTT+TGG 0.346874 3_4:-76338599 Msa0522990:three_prime_UTR
GTGAAGATAATCTAACTCTT+TGG 0.356818 3_4:+76339068 None:intergenic
CAACTTGGAGCACGCAGAAT+TGG 0.361534 3_4:-76339210 Msa0522990:CDS
TCTGGTGCGAATAGTAAAAT+AGG 0.368387 3_4:+76339308 None:intergenic
AAGCTTTCTGTATACACTTT+CGG 0.369467 3_4:+76338754 None:intergenic
CATCACTTCCAGCTACTATA+AGG 0.370304 3_4:+76339343 None:intergenic
ACTCTAACTTGCCCAATAGT+AGG 0.371094 3_4:-76339047 Msa0522990:CDS
GGATATAAAGTTGCGGATAA+AGG 0.374731 3_4:-76338881 Msa0522990:CDS
TTGTTCTCAGTTGAAGAGTT+AGG 0.379803 3_4:-76339708 Msa0522990:intron
TGTTTAGTGCAGCCCCTATT+GGG 0.384622 3_4:-76339185 Msa0522990:CDS
AATATGTATTCTGAATTATC+AGG 0.387799 3_4:+76338797 None:intergenic
GGAGATTCTATCATGGATAC+AGG 0.388121 3_4:-76341651 Msa0522990:CDS
AGGTGTGGTTGGAGAGAATA+GGG 0.393629 3_4:-76339394 Msa0522990:CDS
GTGTTTAGTGCAGCCCCTAT+TGG 0.394496 3_4:-76339186 Msa0522990:CDS
ATCTATATGTTGAAATTTGA+GGG 0.398940 3_4:-76338526 Msa0522990:three_prime_UTR
AATCTATATGTTGAAATTTG+AGG 0.399158 3_4:-76338527 Msa0522990:three_prime_UTR
TCCTGCTTATGCTGACCTAA+TGG 0.399190 3_4:-76339268 Msa0522990:CDS
CTTGCTGAACTCTCTCTATA+TGG 0.400568 3_4:-76341820 Msa0522990:exon
TGTGATGGTAAGTACCCAAT+AGG 0.401521 3_4:+76339171 None:intergenic
AAATCAGTCGGTGATTTCAT+TGG 0.402412 3_4:-76339460 Msa0522990:intron
ATATAAATGACCCTACTATT+GGG 0.404016 3_4:+76339036 None:intergenic
TGAATTAATTGACAATGAAA+AGG 0.430872 3_4:-76338437 None:intergenic
CCCTGAAAATCTTGACCATA+AGG 0.434979 3_4:+76341585 None:intergenic
GTGATGGTAAGTACCCAATA+GGG 0.441957 3_4:+76339172 None:intergenic
CTTGAGAATGATATCAAGTA+AGG 0.448541 3_4:+76338999 None:intergenic
CCGTTGCAAAATCGACCTGT+TGG 0.457925 3_4:+76341555 None:intergenic
AATATCATAGTGCAGTTGTC+TGG 0.466366 3_4:+76339290 None:intergenic
TTTCAGGGAGGGATTCCAAC+AGG 0.467679 3_4:-76341570 Msa0522990:CDS
TTTGAACATCTTTAGTTGAT+CGG 0.472275 3_4:+76339437 None:intergenic
GATAAAGGTTGTTGTGGTAC+AGG 0.474471 3_4:-76338866 Msa0522990:CDS
ACCATTAGGTCAGCATAAGC+AGG 0.475339 3_4:+76339267 None:intergenic
TCCTTTAACGCCTAAAATAG+TGG 0.484726 3_4:-76339589 Msa0522990:intron
TGTAGTTCTTCCAAAATATG+TGG 0.495162 3_4:-76338726 Msa0522990:CDS
AAACCAAGCGATCTTCCTAC+TGG 0.507244 3_4:-76339645 Msa0522990:CDS
AGATTTGGATCCAAATAAGC+TGG 0.507343 3_4:+76339669 None:intergenic
CTCTAACTTGCCCAATAGTA+GGG 0.518740 3_4:-76339046 Msa0522990:CDS
TTTCTGTATACACTTTCGGT+TGG 0.527788 3_4:+76338758 None:intergenic
TATATACCTATCAAGTCTGA+TGG 0.528276 3_4:+76341525 None:intergenic
CAGGACAAGTGGCACTCAAA+GGG 0.531905 3_4:+76338816 None:intergenic
AAGGTGTGGTTGGAGAGAAT+AGG 0.534567 3_4:-76339395 Msa0522990:CDS
ATTAAGGAAATATATCAACT+TGG 0.538446 3_4:-76339225 Msa0522990:CDS
GTGAAGCTTAAAGGTGTGGT+TGG 0.538530 3_4:-76339405 Msa0522990:CDS
ATCGTATAGAACGAATGCAT+TGG 0.545694 3_4:-76341718 Msa0522990:CDS
TAAGGAAAAGAGTATTTGCT+AGG 0.548012 3_4:+76339361 None:intergenic
TCAGGACAAGTGGCACTCAA+AGG 0.553804 3_4:+76338815 None:intergenic
GCGAATAGTAAAATAGGTGT+TGG 0.556326 3_4:+76339314 None:intergenic
TCTCCAAAAGCTATGAGTGC+AGG 0.557089 3_4:+76341669 None:intergenic
GCAGGAACTGTAACATTTGG+TGG 0.559617 3_4:+76341687 None:intergenic
GAGTTTGGAGTTGAATAACT+TGG 0.562850 3_4:+76339092 None:intergenic
TTACCATCACAGAAGACTCT+AGG 0.572011 3_4:-76339159 Msa0522990:CDS
TTCTGAATTATCAGGACAAG+TGG 0.574457 3_4:+76338805 None:intergenic
GTTGCGGATAAAGGTTGTTG+TGG 0.574838 3_4:-76338872 Msa0522990:CDS
AGTGCAGGAACTGTAACATT+TGG 0.575059 3_4:+76341684 None:intergenic
CTATTTGGTGAATAAGTGCT+AGG 0.575285 3_4:+76341777 None:intergenic
GAGGGGTTGAACTTACTACA+AGG 0.584717 3_4:-76338508 Msa0522990:three_prime_UTR
ACTCCAGTAGGAAGATCGCT+TGG 0.585216 3_4:+76339642 None:intergenic
GAAGCAAAGCATACTCCAGT+AGG 0.590600 3_4:+76339630 None:intergenic
CCACCTAGAGTCTTCTGTGA+TGG 0.593938 3_4:+76339156 None:intergenic
TTGGAGTGTGAAACTGCATA+TGG 0.594535 3_4:-76338580 Msa0522990:three_prime_UTR
TAGTAAAATAGGTGTTGGCA+AGG 0.594605 3_4:+76339319 None:intergenic
TCTATATGTTGAAATTTGAG+GGG 0.598354 3_4:-76338525 Msa0522990:three_prime_UTR
GAAAATCTTGACCATAAGGA+GGG 0.605056 3_4:+76341589 None:intergenic
ATCACAGAAGACTCTAGGTG+GGG 0.606452 3_4:-76339154 Msa0522990:CDS
TATGCTGACCTAATGGTCAA+AGG 0.606777 3_4:-76339261 Msa0522990:CDS
ATATAGAGAGAGTTCAGCAA+GGG 0.613794 3_4:+76341822 None:intergenic
CATAGTGAAGCTTAAAGGTG+TGG 0.614858 3_4:-76339409 Msa0522990:CDS
TATTTCCTTAATAAAATCAG+AGG 0.620327 3_4:+76339236 None:intergenic
TGAAAATCTTGACCATAAGG+AGG 0.620952 3_4:+76341588 None:intergenic
GTAGTTCTTCCAAAATATGT+GGG 0.621430 3_4:-76338725 Msa0522990:CDS
TTGAGAATGATATCAAGTAA+GGG 0.622870 3_4:+76339000 None:intergenic
TTGTGGTACAGGAAAGCTAG+AGG 0.630213 3_4:-76338855 Msa0522990:CDS
AGGGGTTGAACTTACTACAA+GGG 0.632273 3_4:-76338507 Msa0522990:three_prime_UTR
CATCACAGAAGACTCTAGGT+GGG 0.635304 3_4:-76339155 Msa0522990:CDS
CCATCACAGAAGACTCTAGG+TGG 0.643895 3_4:-76339156 Msa0522990:CDS
AAGTGTATACAGAAAGCTTG+TGG 0.647850 3_4:-76338750 Msa0522990:CDS
AAATGCAGGATATAAAGTTG+CGG 0.654000 3_4:-76338888 Msa0522990:intron
CATATAGAGAGAGTTCAGCA+AGG 0.663146 3_4:+76341821 None:intergenic
TGATGGTAAGTACCCAATAG+GGG 0.663546 3_4:+76339173 None:intergenic
TCACAGAAGACTCTAGGTGG+GGG 0.675044 3_4:-76339153 Msa0522990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATTTTTTATTTTTTGA+AGG + chr3_4:76338870-76338889 None:intergenic 10.0%
!! ATAAAAAATTCATATCTATA+TGG - chr3_4:76338877-76338896 Msa0522990:CDS 10.0%
!!! ATATATTTTTAAATACATTG+TGG - chr3_4:76338928-76338947 Msa0522990:intron 10.0%
!! ATTATTTACAGTATATAATT+AGG + chr3_4:76339238-76339257 None:intergenic 10.0%
!! CATTTAATGAATTATATATT+AGG + chr3_4:76341431-76341450 None:intergenic 10.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr3_4:76339294-76339313 None:intergenic 15.0%
!! AAATTAACCAATAGTTAATA+AGG - chr3_4:76339411-76339430 Msa0522990:CDS 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr3_4:76339421-76339440 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr3_4:76339420-76339439 Msa0522990:CDS 15.0%
!! AATGATTAAAAGAAAAAGAA+TGG + chr3_4:76339454-76339473 None:intergenic 15.0%
!!! TGTGAATTTTTAAATTACAA+AGG + chr3_4:76339743-76339762 None:intergenic 15.0%
!! TTTGTAATATTCATTAAATG+TGG + chr3_4:76340319-76340338 None:intergenic 15.0%
!! TTATATTCAACAAAACTTTA+AGG + chr3_4:76340376-76340395 None:intergenic 15.0%
!!! ACATGCATTTTTTTTATATT+TGG + chr3_4:76340528-76340547 None:intergenic 15.0%
!! TCATATAGTAATTAATTACT+TGG - chr3_4:76340603-76340622 Msa0522990:intron 15.0%
!!! AATTTTTTTTACAAATCAGT+CGG - chr3_4:76340862-76340881 Msa0522990:intron 15.0%
!!! TAATTACTTACCATATTTTT+GGG + chr3_4:76341362-76341381 None:intergenic 15.0%
!!! TTAATTACTTACCATATTTT+TGG + chr3_4:76341363-76341382 None:intergenic 15.0%
!! ATATATAATTCATTAAATGC+AGG - chr3_4:76341432-76341451 Msa0522990:intron 15.0%
!!! ATAATTCAGAATACATATTT+TGG - chr3_4:76341541-76341560 Msa0522990:CDS 15.0%
!!! TAATTCAGAATACATATTTT+GGG - chr3_4:76341542-76341561 Msa0522990:CDS 15.0%
!! CGTAATAATATTAAGCTATT+TGG + chr3_4:76338575-76338594 None:intergenic 20.0%
!!! AAGCTTGATTTAAAATGTTA+AGG + chr3_4:76338979-76338998 None:intergenic 20.0%
!!! AACAAAATTTTCAAGGTTTT+TGG + chr3_4:76339159-76339178 None:intergenic 20.0%
!!! TTACACAAACAAAATTTTCA+AGG + chr3_4:76339166-76339185 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr3_4:76339334-76339353 None:intergenic 20.0%
!! TTAAATTACAAAGGTTTCAT+GGG + chr3_4:76339734-76339753 None:intergenic 20.0%
!! TTTAAATTACAAAGGTTTCA+TGG + chr3_4:76339735-76339754 None:intergenic 20.0%
!! TAAAAATTCACATATTTGCT+TGG - chr3_4:76339751-76339770 Msa0522990:intron 20.0%
!! AAGAAAAAAGTAGTTGAAAA+CGG - chr3_4:76340079-76340098 Msa0522990:intron 20.0%
!!! ATTTTCTACTATTTTGAACT+AGG + chr3_4:76340231-76340250 None:intergenic 20.0%
!!! TTTTGAATTAACTTTGTCAT+TGG - chr3_4:76340470-76340489 Msa0522990:intron 20.0%
!! TTTGAATTAACTTTGTCATT+GGG - chr3_4:76340471-76340490 Msa0522990:intron 20.0%
!! TATTTCCTTAATAAAATCAG+AGG + chr3_4:76341101-76341120 None:intergenic 20.0%
!! ATTAAGGAAATATATCAACT+TGG - chr3_4:76341109-76341128 Msa0522990:intron 20.0%
!!! AATTACTTACCATATTTTTG+GGG + chr3_4:76341361-76341380 None:intergenic 20.0%
!! AATATGTATTCTGAATTATC+AGG + chr3_4:76341540-76341559 None:intergenic 20.0%
!! AATCTATATGTTGAAATTTG+AGG - chr3_4:76341807-76341826 Msa0522990:exon 20.0%
!! ATCTATATGTTGAAATTTGA+GGG - chr3_4:76341808-76341827 Msa0522990:exon 20.0%
! AATGTTAAGGTTGTAAAACA+AGG + chr3_4:76338966-76338985 None:intergenic 25.0%
! AGTGTTAAACATTGATAAAG+TGG - chr3_4:76339001-76339020 Msa0522990:CDS 25.0%
!!! TTTTTTGTTGTCAAAAGATC+AGG - chr3_4:76339648-76339667 Msa0522990:CDS 25.0%
! TTGTATCGAAATTCAATCAT+TGG - chr3_4:76339698-76339717 Msa0522990:CDS 25.0%
!!! TGTTTTTTTTACTGATAACG+TGG - chr3_4:76340128-76340147 Msa0522990:intron 25.0%
! TTTGAACTAGGATTAACTAA+AGG + chr3_4:76340219-76340238 None:intergenic 25.0%
! TTTGAACATCTTTAGTTGAT+CGG + chr3_4:76340900-76340919 None:intergenic 25.0%
! ATATAAATGACCCTACTATT+GGG + chr3_4:76341301-76341320 None:intergenic 25.0%
! AATATAAATGACCCTACTAT+TGG + chr3_4:76341302-76341321 None:intergenic 25.0%
! TTGAGAATGATATCAAGTAA+GGG + chr3_4:76341337-76341356 None:intergenic 25.0%
! TCTATATGTTGAAATTTGAG+GGG - chr3_4:76341809-76341828 Msa0522990:exon 25.0%
AAAAATCCATCAGACTTGAT+AGG - chr3_4:76338803-76338822 Msa0522990:CDS 30.0%
TATATACCTATCAAGTCTGA+TGG + chr3_4:76338812-76338831 None:intergenic 30.0%
!!! TTTCAAGGTTTTTGGCTTTT+GGG + chr3_4:76339151-76339170 None:intergenic 30.0%
!!! TTTTCAAGGTTTTTGGCTTT+TGG + chr3_4:76339152-76339171 None:intergenic 30.0%
!!! CTTTTTAATTTGACACCTTC+TGG - chr3_4:76339186-76339205 Msa0522990:CDS 30.0%
!!! TGATTAGTTTTTTCTCCAGA+AGG + chr3_4:76339204-76339223 None:intergenic 30.0%
! TGTTCAGAGTATTAATTGGA+GGG + chr3_4:76339368-76339387 None:intergenic 30.0%
! GTAGTGTTCAGAGTATTAAT+TGG + chr3_4:76339372-76339391 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr3_4:76339502-76339521 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr3_4:76339503-76339522 Msa0522990:intron 30.0%
! ACCAAATGAAAACGATGTTT+TGG - chr3_4:76339779-76339798 Msa0522990:intron 30.0%
! ACCAAAACATCGTTTTCATT+TGG + chr3_4:76339783-76339802 None:intergenic 30.0%
ATTAATTGAGCCTCATTAGA+AGG - chr3_4:76339810-76339829 Msa0522990:intron 30.0%
AAAAGTTAAAAACACAAGCC+TGG + chr3_4:76340011-76340030 None:intergenic 30.0%
ATTGTCAGTAGAGAATAATG+TGG - chr3_4:76340103-76340122 Msa0522990:intron 30.0%
! TTCATCCATACCACTATTTT+AGG + chr3_4:76340758-76340777 None:intergenic 30.0%
GAATACATAGTGAAGCTTAA+AGG - chr3_4:76340920-76340939 Msa0522990:intron 30.0%
!! TAAGGAAAAGAGTATTTGCT+AGG + chr3_4:76340976-76340995 None:intergenic 30.0%
TGCTTCATTGTATTTCTCAT+TGG + chr3_4:76341221-76341240 None:intergenic 30.0%
GTGAAGATAATCTAACTCTT+TGG + chr3_4:76341269-76341288 None:intergenic 30.0%
CTTGAGAATGATATCAAGTA+AGG + chr3_4:76341338-76341357 None:intergenic 30.0%
AAATGCAGGATATAAAGTTG+CGG - chr3_4:76341446-76341465 Msa0522990:intron 30.0%
AAGCTTTCTGTATACACTTT+CGG + chr3_4:76341583-76341602 None:intergenic 30.0%
TGTAGTTCTTCCAAAATATG+TGG - chr3_4:76341608-76341627 Msa0522990:CDS 30.0%
GTAGTTCTTCCAAAATATGT+GGG - chr3_4:76341609-76341628 Msa0522990:CDS 30.0%
CTTCTGTTCACAATTGTAAT+TGG - chr3_4:76341696-76341715 Msa0522990:CDS 30.0%
! TGTCCTCTAAAAACAAAACA+TGG + chr3_4:76341780-76341799 None:intergenic 30.0%
!!! GGATAGCTTTTTCATCTCTT+TGG + chr3_4:76338494-76338513 None:intergenic 35.0%
ATATAGAGAGAGTTCAGCAA+GGG + chr3_4:76338515-76338534 None:intergenic 35.0%
! CTATTTGGTGAATAAGTGCT+AGG + chr3_4:76338560-76338579 None:intergenic 35.0%
ATCGTATAGAACGAATGCAT+TGG - chr3_4:76338616-76338635 Msa0522990:three_prime_UTR 35.0%
!! AGCTTTTGGAGATTCTATCA+TGG - chr3_4:76338676-76338695 Msa0522990:three_prime_UTR 35.0%
GAAAATCTTGACCATAAGGA+GGG + chr3_4:76338748-76338767 None:intergenic 35.0%
TGAAAATCTTGACCATAAGG+AGG + chr3_4:76338749-76338768 None:intergenic 35.0%
! TCCTTATGGTCAAGATTTTC+AGG - chr3_4:76338748-76338767 Msa0522990:CDS 35.0%
! CCTTATGGTCAAGATTTTCA+GGG - chr3_4:76338749-76338768 Msa0522990:CDS 35.0%
CTTCTTTCGTCATTGTCATA+TGG - chr3_4:76339079-76339098 Msa0522990:CDS 35.0%
!!! TTCAAGGTTTTTGGCTTTTG+GGG + chr3_4:76339150-76339169 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_4:76339268-76339287 None:intergenic 35.0%
! GTGTTCAGAGTATTAATTGG+AGG + chr3_4:76339369-76339388 None:intergenic 35.0%
TTGTTGTCAAAAGATCAGGA+AGG - chr3_4:76339652-76339671 Msa0522990:CDS 35.0%
TTGAATGAGTGATACGTCAA+TGG - chr3_4:76339905-76339924 Msa0522990:intron 35.0%
!! AGAGCAAGGCATTTTTATCA+TGG - chr3_4:76339930-76339949 Msa0522990:intron 35.0%
ATGGTAATTACTTGGAAGTC+TGG + chr3_4:76339967-76339986 None:intergenic 35.0%
! TCTAGCTCATGGTAATTACT+TGG + chr3_4:76339975-76339994 None:intergenic 35.0%
TTGTTCTCAGTTGAAGAGTT+AGG - chr3_4:76340626-76340645 Msa0522990:intron 35.0%
! AGAGCTTTTACCAGCTTATT+TGG - chr3_4:76340655-76340674 Msa0522990:intron 35.0%
AGATTTGGATCCAAATAAGC+TGG + chr3_4:76340668-76340687 None:intergenic 35.0%
TCCTTTAACGCCTAAAATAG+TGG - chr3_4:76340745-76340764 Msa0522990:intron 35.0%
!! ACCACTATTTTAGGCGTTAA+AGG + chr3_4:76340749-76340768 None:intergenic 35.0%
TAACGCCTAAAATAGTGGTA+TGG - chr3_4:76340750-76340769 Msa0522990:intron 35.0%
AAATCAGTCGGTGATTTCAT+TGG - chr3_4:76340874-76340893 Msa0522990:intron 35.0%
! ACTCTTTTCCTTATAGTAGC+TGG - chr3_4:76340983-76341002 Msa0522990:intron 35.0%
!! TAGTAAAATAGGTGTTGGCA+AGG + chr3_4:76341018-76341037 None:intergenic 35.0%
GCGAATAGTAAAATAGGTGT+TGG + chr3_4:76341023-76341042 None:intergenic 35.0%
TCTGGTGCGAATAGTAAAAT+AGG + chr3_4:76341029-76341048 None:intergenic 35.0%
AATATCATAGTGCAGTTGTC+TGG + chr3_4:76341047-76341066 None:intergenic 35.0%
! AGGAGCCTCTGATTTTATTA+AGG - chr3_4:76341093-76341112 Msa0522990:intron 35.0%
! GAGTTTGGAGTTGAATAACT+TGG + chr3_4:76341245-76341264 None:intergenic 35.0%
! ATCTAACTCTTTGGAGAGTT+TGG + chr3_4:76341260-76341279 None:intergenic 35.0%
ATTCTCAAGCCCCAAAAATA+TGG - chr3_4:76341349-76341368 Msa0522990:intron 35.0%
GGATATAAAGTTGCGGATAA+AGG - chr3_4:76341453-76341472 Msa0522990:intron 35.0%
TTCTGAATTATCAGGACAAG+TGG + chr3_4:76341532-76341551 None:intergenic 35.0%
TTTCTGTATACACTTTCGGT+TGG + chr3_4:76341579-76341598 None:intergenic 35.0%
AAGTGTATACAGAAAGCTTG+TGG - chr3_4:76341584-76341603 Msa0522990:CDS 35.0%
!! TGGTTTTTGTTTCACAACAG+TGG - chr3_4:76341716-76341735 Msa0522990:CDS 35.0%
!! GTGGCTTTATTGAGTATGTT+TGG - chr3_4:76341735-76341754 Msa0522990:CDS 35.0%
!!! TGGCCATGTTTTGTTTTTAG+AGG - chr3_4:76341774-76341793 Msa0522990:CDS 35.0%
!! ACGTGCTAGCTATAGTTTTG+TGG - chr3_4:76338442-76338461 Msa0522990:three_prime_UTR 40.0%
CATATAGAGAGAGTTCAGCA+AGG + chr3_4:76338516-76338535 None:intergenic 40.0%
CTTGCTGAACTCTCTCTATA+TGG - chr3_4:76338514-76338533 Msa0522990:three_prime_UTR 40.0%
AGTGCAGGAACTGTAACATT+TGG + chr3_4:76338653-76338672 None:intergenic 40.0%
GGAGATTCTATCATGGATAC+AGG - chr3_4:76338683-76338702 Msa0522990:three_prime_UTR 40.0%
AAGTGCAATTTCCCTCCTTA+TGG - chr3_4:76338734-76338753 Msa0522990:CDS 40.0%
CCCTGAAAATCTTGACCATA+AGG + chr3_4:76338752-76338771 None:intergenic 40.0%
!! TATGGTCAAGATTTTCAGGG+AGG - chr3_4:76338752-76338771 Msa0522990:CDS 40.0%
!! ATGGTCAAGATTTTCAGGGA+GGG - chr3_4:76338753-76338772 Msa0522990:CDS 40.0%
ATATGGCTGTGAGGAATTCA+TGG - chr3_4:76339096-76339115 Msa0522990:CDS 40.0%
GGCCTATGAGATGACATATA+TGG - chr3_4:76339123-76339142 Msa0522990:CDS 40.0%
GGCCATATATGTCATCTCAT+AGG + chr3_4:76339128-76339147 None:intergenic 40.0%
!!! TCAAGGTTTTTGGCTTTTGG+GGG + chr3_4:76339149-76339168 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_4:76339507-76339526 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_4:76339507-76339526 Msa0522990:intron 40.0%
ATACGTCAATGGATAGAGCA+AGG - chr3_4:76339916-76339935 Msa0522990:intron 40.0%
! ACATACTCATGTCTAGCTCA+TGG + chr3_4:76339986-76340005 None:intergenic 40.0%
! AGATCGCTTGGTTTGAGATT+TGG + chr3_4:76340683-76340702 None:intergenic 40.0%
CATAGTGAAGCTTAAAGGTG+TGG - chr3_4:76340925-76340944 Msa0522990:intron 40.0%
CATCACTTCCAGCTACTATA+AGG + chr3_4:76340994-76341013 None:intergenic 40.0%
TATGCTGACCTAATGGTCAA+AGG - chr3_4:76341073-76341092 Msa0522990:intron 40.0%
TGATGGTAAGTACCCAATAG+GGG + chr3_4:76341164-76341183 None:intergenic 40.0%
GTGATGGTAAGTACCCAATA+GGG + chr3_4:76341165-76341184 None:intergenic 40.0%
TGTGATGGTAAGTACCCAAT+AGG + chr3_4:76341166-76341185 None:intergenic 40.0%
TTACCATCACAGAAGACTCT+AGG - chr3_4:76341175-76341194 Msa0522990:intron 40.0%
! ACTCTAACTTGCCCAATAGT+AGG - chr3_4:76341287-76341306 Msa0522990:intron 40.0%
! CTCTAACTTGCCCAATAGTA+GGG - chr3_4:76341288-76341307 Msa0522990:intron 40.0%
GATAAAGGTTGTTGTGGTAC+AGG - chr3_4:76341468-76341487 Msa0522990:intron 40.0%
! GTCAATCGACCCACATATTT+TGG + chr3_4:76341621-76341640 None:intergenic 40.0%
TTGGAGTGTGAAACTGCATA+TGG - chr3_4:76341754-76341773 Msa0522990:CDS 40.0%
AGGGGTTGAACTTACTACAA+GGG - chr3_4:76341827-76341846 Msa0522990:five_prime_UTR 40.0%
GCAGGAACTGTAACATTTGG+TGG + chr3_4:76338650-76338669 None:intergenic 45.0%
! GTTCCTGCACTCATAGCTTT+TGG - chr3_4:76338662-76338681 Msa0522990:three_prime_UTR 45.0%
TCTCCAAAAGCTATGAGTGC+AGG + chr3_4:76338668-76338687 None:intergenic 45.0%
!! CCAACAGGTCGATTTTGCAA+CGG - chr3_4:76338779-76338798 Msa0522990:CDS 45.0%
GTCATTGTCATATGGCTGTG+AGG - chr3_4:76339087-76339106 Msa0522990:CDS 45.0%
CTGTGAGGAATTCATGGAGA+GGG - chr3_4:76339102-76339121 Msa0522990:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_4:76339506-76339525 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_4:76339506-76339525 Msa0522990:intron 45.0%
! AAAGATCAGGAAGGTGTGTG+TGG - chr3_4:76339661-76339680 Msa0522990:CDS 45.0%
GTGAGCTTCACCTTCTAATG+AGG + chr3_4:76339823-76339842 None:intergenic 45.0%
CTAGACATGAGTATGTGTCC+AGG - chr3_4:76339990-76340009 Msa0522990:intron 45.0%
AAACCAAGCGATCTTCCTAC+TGG - chr3_4:76340689-76340708 Msa0522990:intron 45.0%
GAAGCAAAGCATACTCCAGT+AGG + chr3_4:76340707-76340726 None:intergenic 45.0%
ACTGGAGTATGCTTTGCTTC+TGG - chr3_4:76340707-76340726 Msa0522990:intron 45.0%
! GTGAAGCTTAAAGGTGTGGT+TGG - chr3_4:76340929-76340948 Msa0522990:intron 45.0%
AAGGTGTGGTTGGAGAGAAT+AGG - chr3_4:76340939-76340958 Msa0522990:intron 45.0%
AGGTGTGGTTGGAGAGAATA+GGG - chr3_4:76340940-76340959 Msa0522990:intron 45.0%
TCCTGCTTATGCTGACCTAA+TGG - chr3_4:76341066-76341085 Msa0522990:intron 45.0%
ACCATTAGGTCAGCATAAGC+AGG + chr3_4:76341070-76341089 None:intergenic 45.0%
TGTTTAGTGCAGCCCCTATT+GGG - chr3_4:76341149-76341168 Msa0522990:intron 45.0%
CATCACAGAAGACTCTAGGT+GGG - chr3_4:76341179-76341198 Msa0522990:intron 45.0%
ATCACAGAAGACTCTAGGTG+GGG - chr3_4:76341180-76341199 Msa0522990:intron 45.0%
GTTGCGGATAAAGGTTGTTG+TGG - chr3_4:76341462-76341481 Msa0522990:intron 45.0%
TTGTGGTACAGGAAAGCTAG+AGG - chr3_4:76341479-76341498 Msa0522990:intron 45.0%
GAGGGGTTGAACTTACTACA+AGG - chr3_4:76341826-76341845 Msa0522990:five_prime_UTR 45.0%
!! AATTAATTATATAATAAAGT+TGG + chr3_4:76340834-76340853 None:intergenic 5.0%
TTTCAGGGAGGGATTCCAAC+AGG - chr3_4:76338764-76338783 Msa0522990:CDS 50.0%
CCGTTGCAAAATCGACCTGT+TGG + chr3_4:76338782-76338801 None:intergenic 50.0%
GCTGTGAGGAATTCATGGAG+AGG - chr3_4:76339101-76339120 Msa0522990:CDS 50.0%
ACTCCAGTAGGAAGATCGCT+TGG + chr3_4:76340695-76340714 None:intergenic 50.0%
TGCTTTGCTTCTGGTGCATC+TGG - chr3_4:76340716-76340735 Msa0522990:intron 50.0%
CAGAGGCTCCTTTGACCATT+AGG + chr3_4:76341084-76341103 None:intergenic 50.0%
CAACTTGGAGCACGCAGAAT+TGG - chr3_4:76341124-76341143 Msa0522990:intron 50.0%
GTGTTTAGTGCAGCCCCTAT+TGG - chr3_4:76341148-76341167 Msa0522990:intron 50.0%
CCACCTAGAGTCTTCTGTGA+TGG + chr3_4:76341181-76341200 None:intergenic 50.0%
CCATCACAGAAGACTCTAGG+TGG - chr3_4:76341178-76341197 Msa0522990:intron 50.0%
TCACAGAAGACTCTAGGTGG+GGG - chr3_4:76341181-76341200 Msa0522990:intron 50.0%
CAGGACAAGTGGCACTCAAA+GGG + chr3_4:76341521-76341540 None:intergenic 50.0%
TCAGGACAAGTGGCACTCAA+AGG + chr3_4:76341522-76341541 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 76338438 76341918 76338438 ID=Msa0522990;Name=Msa0522990
chr3_4 mRNA 76338438 76341918 76338438 ID=Msa0522990-mRNA-1;Parent=Msa0522990;Name=Msa0522990-mRNA-1;_AED=0.28;_eAED=0.28;_QI=95|1|1|1|1|1|4|271|368
chr3_4 exon 76338438 76338902 76338438 ID=Msa0522990-mRNA-1:exon:22107;Parent=Msa0522990-mRNA-1
chr3_4 exon 76338986 76339475 76338986 ID=Msa0522990-mRNA-1:exon:22106;Parent=Msa0522990-mRNA-1
chr3_4 exon 76339590 76339720 76339590 ID=Msa0522990-mRNA-1:exon:22105;Parent=Msa0522990-mRNA-1
chr3_4 exon 76341532 76341918 76341532 ID=Msa0522990-mRNA-1:exon:22104;Parent=Msa0522990-mRNA-1
chr3_4 five_prime_UTR 76341824 76341918 76341824 ID=Msa0522990-mRNA-1:five_prime_utr;Parent=Msa0522990-mRNA-1
chr3_4 CDS 76341532 76341823 76341532 ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4 CDS 76339590 76339720 76339590 ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4 CDS 76338986 76339475 76338986 ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4 CDS 76338709 76338902 76338709 ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4 three_prime_UTR 76338438 76338708 76338438 ID=Msa0522990-mRNA-1:three_prime_utr;Parent=Msa0522990-mRNA-1
Gene Sequence

>Msa0522990

ATGGCTGTGTTTATGATGAAGCTGCCTAGCACTTATTCACCAAATAGCTTAATATTATTACGTTTCATGTTGTTGTTAGTTTTATCGTATAGAACGAATGCATTGGTTAAACTACCACCAAATGTTACAGTTCCTGCACTCATAGCTTTTGGAGATTCTATCATGGATACAGGAAATAACAATAACATCAAAACAATCGTCAAGTGCAATTTCCCTCCTTATGGTCAAGATTTTCAGGGAGGGATTCCAACAGGTCGATTTTGCAACGGAAAAAATCCATCAGACTTGATAGTTGAAGAGTTAGGTATTAAAGAGCTTTTACCAGCTTATTTGGATCCAAATCTCAAACCAAGCGATCTTCCTACTGGAGTATGCTTTGCTTCTGGTGCATCTGGATATGATCCTTTAACGCCTAAAATAGTGTCGGTGATTTCATTGGCCGATCAACTAAAGATGTTCAAAGAATACATAGTGAAGCTTAAAGGTGTGGTTGGAGAGAATAGGGCAAACTTCATCCTAGCAAATACTCTTTTCCTTATAGTAGCTGGAAGTGATGACCTTGCCAACACCTATTTTACTATTCGCACCAGACAACTGCACTATGATATTCCTGCTTATGCTGACCTAATGGTCAAAGGAGCCTCTGATTTTATTAAGGAAATATATCAACTTGGAGCACGCAGAATTGGAGTGTTTAGTGCAGCCCCTATTGGGTACTTACCATCACAGAAGACTCTAGGTGGGGGTGTATATAGAAAGACCAATGAGAAATACAATGAAGCAGCCAAGTTATTCAACTCCAAACTCTCCAAAGAGTTAGATTATCTTCACTCTAACTTGCCCAATAGTAGGGTCATTTATATTGATATTTACAGTCCCTTACTTGATATCATTCTCAAGCCCCAAAAATATGGATATAAAGTTGCGGATAAAGGTTGTTGTGGTACAGGAAAGCTAGAGGTTTCAGTGCTATGCAACCCTTTGAGTGCCACTTGTCCTGATAATTCAGAATACATATTTTGGGACAGTTATCATCCAACCGAAAGTGTATACAGAAAGCTTGTGGCTGTAGTTCTTCCAAAATATGTGGGTCGATTGACTGCATGA

Protein sequence

>Msa0522990

MAVFMMKLPSTYSPNSLILLRFMLLLVLSYRTNALVKLPPNVTVPALIAFGDSIMDTGNNNNIKTIVKCNFPPYGQDFQGGIPTGRFCNGKNPSDLIVEELGIKELLPAYLDPNLKPSDLPTGVCFASGASGYDPLTPKIVSVISLADQLKMFKEYIVKLKGVVGENRANFILANTLFLIVAGSDDLANTYFTIRTRQLHYDIPAYADLMVKGASDFIKEIYQLGARRIGVFSAAPIGYLPSQKTLGGGVYRKTNEKYNEAAKLFNSKLSKELDYLHSNLPNSRVIYIDIYSPLLDIILKPQKYGYKVADKGCCGTGKLEVSVLCNPLSATCPDNSEYIFWDSYHPTESVYRKLVAVVLPKYVGRLTA*