AlfalfaGEDB | Msa0522990

M. sativa cultivar zhongmu-4 / Msa0522990

KEGG: -
GO: -
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522990	XP_003603782.1	96.748	369	11	1	1	368	1	369	0.0	726

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522990	sp\|Q94CH6\|EXL3_ARATH	59.130	345	139	2	23	366	20	363	2.45e-151	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522990	G7J5A5	96.748	369	11	1	1	368	1	369	0.0	726

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0522990	0.800300	1.537372e-48	-8.615850e-47
Msa0002690	Msa0522990	0.844554	7.033742e-59	-8.615850e-47
Msa0002700	Msa0522990	0.853658	2.066416e-61	-8.615850e-47
Msa0003370	Msa0522990	0.843974	1.007256e-58	-8.615850e-47
Msa0005500	Msa0522990	0.849145	3.900711e-60	-8.615850e-47
Msa0018010	Msa0522990	0.808186	3.504356e-50	-8.615850e-47
Msa0021240	Msa0522990	0.807871	4.090258e-50	-8.615850e-47
Msa0021570	Msa0522990	0.848396	6.295251e-60	-8.615850e-47
Msa0022230	Msa0522990	0.805621	1.221734e-49	-8.615850e-47
Msa0024070	Msa0522990	0.840116	1.055403e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522990	MtrunA17_Chr3g0142941	96.748	369	11	1	1	368	1	369	0.0	726
Msa0522990	MtrunA17_Chr1g0156931	69.972	363	105	3	5	366	1	360	0.0	530
Msa0522990	MtrunA17_Chr1g0156891	65.029	346	120	1	19	363	16	361	5.47e-174	488
Msa0522990	MtrunA17_Chr3g0142921	64.225	355	123	2	16	366	3	357	1.36e-169	477
Msa0522990	MtrunA17_Chr1g0156901	60.665	361	140	1	8	366	10	370	2.23e-169	477
Msa0522990	MtrunA17_Chr1g0156911	60.345	348	137	1	16	363	8	354	9.46e-164	462
Msa0522990	MtrunA17_Chr1g0156921	58.571	350	144	1	18	366	14	363	3.82e-157	446
Msa0522990	MtrunA17_Chr5g0405821	54.046	346	156	3	17	359	14	359	4.94e-132	382
Msa0522990	MtrunA17_Chr8g0371491	51.906	341	163	1	24	363	14	354	7.65e-132	381
Msa0522990	MtrunA17_Chr5g0405831	52.464	345	162	2	17	359	14	358	6.37e-128	371

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522990	AT1G75900.1	59.130	345	139	2	23	366	20	363	2.49e-152	434
Msa0522990	AT1G75880.2	53.571	364	165	2	7	366	10	373	7.47e-138	397
Msa0522990	AT1G75880.1	53.699	365	164	3	7	366	10	374	1.14e-136	394
Msa0522990	AT1G75890.2	52.035	344	163	2	22	363	23	366	2.37e-133	385
Msa0522990	AT1G75890.3	52.035	344	163	2	22	363	52	395	3.10e-133	386
Msa0522990	AT5G42170.1	54.217	332	148	2	36	366	40	368	1.09e-131	381
Msa0522990	AT3G14820.1	54.467	347	153	3	17	362	3	345	6.32e-130	376
Msa0522990	AT1G75890.1	50.140	357	163	3	22	363	23	379	7.43e-130	377
Msa0522990	AT1G59406.1	52.000	350	160	6	19	366	5	348	3.46e-124	362
Msa0522990	AT1G59030.1	52.000	350	160	6	19	366	5	348	3.46e-124	362

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Find 93 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGCGATCTTCCTAC+TGG	0.507244	3_4:-76339645	Msa0522990:CDS
AAATCAGTCGGTGATTTCAT+TGG	0.402412	3_4:-76339460	Msa0522990:intron
AAATGCAGGATATAAAGTTG+CGG	0.654000	3_4:-76338888	Msa0522990:intron
AAGCTTTCTGTATACACTTT+CGG	0.369467	3_4:+76338754	None:intergenic
AAGGTGTGGTTGGAGAGAAT+AGG	0.534567	3_4:-76339395	Msa0522990:CDS
AAGTGCAATTTCCCTCCTTA+TGG	0.329907	3_4:-76341600	Msa0522990:CDS
AAGTGTATACAGAAAGCTTG+TGG	0.647850	3_4:-76338750	Msa0522990:CDS
AATATAAATGACCCTACTAT+TGG	0.297842	3_4:+76339035	None:intergenic
AATATCATAGTGCAGTTGTC+TGG	0.466366	3_4:+76339290	None:intergenic
AATATGTATTCTGAATTATC+AGG	0.387799	3_4:+76338797	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCCATCAGACTTGAT+AGG	-	chr3_4:76338803-76338822	Msa0522990:CDS	30.0%
TATATACCTATCAAGTCTGA+TGG	+	chr3_4:76338812-76338831	None:intergenic	30.0%
ATTAATTGAGCCTCATTAGA+AGG	-	chr3_4:76339810-76339829	Msa0522990:intron	30.0%
AAAAGTTAAAAACACAAGCC+TGG	+	chr3_4:76340011-76340030	None:intergenic	30.0%
ATTGTCAGTAGAGAATAATG+TGG	-	chr3_4:76340103-76340122	Msa0522990:intron	30.0%
GAATACATAGTGAAGCTTAA+AGG	-	chr3_4:76340920-76340939	Msa0522990:intron	30.0%
TGCTTCATTGTATTTCTCAT+TGG	+	chr3_4:76341221-76341240	None:intergenic	30.0%
GTGAAGATAATCTAACTCTT+TGG	+	chr3_4:76341269-76341288	None:intergenic	30.0%
CTTGAGAATGATATCAAGTA+AGG	+	chr3_4:76341338-76341357	None:intergenic	30.0%
AAATGCAGGATATAAAGTTG+CGG	-	chr3_4:76341446-76341465	Msa0522990:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	76338438	76341918	76338438	ID=Msa0522990;Name=Msa0522990
chr3_4	mRNA	76338438	76341918	76338438	ID=Msa0522990-mRNA-1;Parent=Msa0522990;Name=Msa0522990-mRNA-1;_AED=0.28;_eAED=0.28;_QI=95\|1\|1\|1\|1\|1\|4\|271\|368
chr3_4	exon	76338438	76338902	76338438	ID=Msa0522990-mRNA-1:exon:22107;Parent=Msa0522990-mRNA-1
chr3_4	exon	76338986	76339475	76338986	ID=Msa0522990-mRNA-1:exon:22106;Parent=Msa0522990-mRNA-1
chr3_4	exon	76339590	76339720	76339590	ID=Msa0522990-mRNA-1:exon:22105;Parent=Msa0522990-mRNA-1
chr3_4	exon	76341532	76341918	76341532	ID=Msa0522990-mRNA-1:exon:22104;Parent=Msa0522990-mRNA-1
chr3_4	five_prime_UTR	76341824	76341918	76341824	ID=Msa0522990-mRNA-1:five_prime_utr;Parent=Msa0522990-mRNA-1
chr3_4	CDS	76341532	76341823	76341532	ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4	CDS	76339590	76339720	76339590	ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4	CDS	76338986	76339475	76338986	ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4	CDS	76338709	76338902	76338709	ID=Msa0522990-mRNA-1:cds;Parent=Msa0522990-mRNA-1
chr3_4	three_prime_UTR	76338438	76338708	76338438	ID=Msa0522990-mRNA-1:three_prime_utr;Parent=Msa0522990-mRNA-1

Gene Sequence

>Msa0522990

ATGGCTGTGTTTATGATGAAGCTGCCTAGCACTTATTCACCAAATAGCTTAATATTATTACGTTTCATGTTGTTGTTAGTTTTATCGTATAGAACGAATGCATTGGTTAAACTACCACCAAATGTTACAGTTCCTGCACTCATAGCTTTTGGAGATTCTATCATGGATACAGGAAATAACAATAACATCAAAACAATCGTCAAGTGCAATTTCCCTCCTTATGGTCAAGATTTTCAGGGAGGGATTCCAACAGGTCGATTTTGCAACGGAAAAAATCCATCAGACTTGATAGTTGAAGAGTTAGGTATTAAAGAGCTTTTACCAGCTTATTTGGATCCAAATCTCAAACCAAGCGATCTTCCTACTGGAGTATGCTTTGCTTCTGGTGCATCTGGATATGATCCTTTAACGCCTAAAATAGTGTCGGTGATTTCATTGGCCGATCAACTAAAGATGTTCAAAGAATACATAGTGAAGCTTAAAGGTGTGGTTGGAGAGAATAGGGCAAACTTCATCCTAGCAAATACTCTTTTCCTTATAGTAGCTGGAAGTGATGACCTTGCCAACACCTATTTTACTATTCGCACCAGACAACTGCACTATGATATTCCTGCTTATGCTGACCTAATGGTCAAAGGAGCCTCTGATTTTATTAAGGAAATATATCAACTTGGAGCACGCAGAATTGGAGTGTTTAGTGCAGCCCCTATTGGGTACTTACCATCACAGAAGACTCTAGGTGGGGGTGTATATAGAAAGACCAATGAGAAATACAATGAAGCAGCCAAGTTATTCAACTCCAAACTCTCCAAAGAGTTAGATTATCTTCACTCTAACTTGCCCAATAGTAGGGTCATTTATATTGATATTTACAGTCCCTTACTTGATATCATTCTCAAGCCCCAAAAATATGGATATAAAGTTGCGGATAAAGGTTGTTGTGGTACAGGAAAGCTAGAGGTTTCAGTGCTATGCAACCCTTTGAGTGCCACTTGTCCTGATAATTCAGAATACATATTTTGGGACAGTTATCATCCAACCGAAAGTGTATACAGAAAGCTTGTGGCTGTAGTTCTTCCAAAATATGTGGGTCGATTGACTGCATGA

Protein sequence

>Msa0522990

MAVFMMKLPSTYSPNSLILLRFMLLLVLSYRTNALVKLPPNVTVPALIAFGDSIMDTGNNNNIKTIVKCNFPPYGQDFQGGIPTGRFCNGKNPSDLIVEELGIKELLPAYLDPNLKPSDLPTGVCFASGASGYDPLTPKIVSVISLADQLKMFKEYIVKLKGVVGENRANFILANTLFLIVAGSDDLANTYFTIRTRQLHYDIPAYADLMVKGASDFIKEIYQLGARRIGVFSAAPIGYLPSQKTLGGGVYRKTNEKYNEAAKLFNSKLSKELDYLHSNLPNSRVIYIDIYSPLLDIILKPQKYGYKVADKGCCGTGKLEVSVLCNPLSATCPDNSEYIFWDSYHPTESVYRKLVAVVLPKYVGRLTA*