AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0868140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868140 MtrunA17_Chr5g0423521 99.518 415 2 0 1 415 82 496 0.0 861
Msa0868140 MtrunA17_Chr1g0209881 92.771 415 30 0 1 415 82 496 0.0 814
Msa0868140 MtrunA17_Chr4g0035081 68.704 409 128 0 1 409 94 502 0.0 611
Msa0868140 MtrunA17_Chr1g0166191 65.385 416 143 1 1 415 103 518 0.0 572
Msa0868140 MtrunA17_Chr1g0188051 63.942 416 149 1 1 415 97 512 0.0 570
Msa0868140 MtrunA17_Chr4g0063011 64.251 414 145 2 1 412 85 497 0.0 568
Msa0868140 MtrunA17_Chr7g0276251 64.146 410 139 3 7 410 122 529 0.0 555
Msa0868140 MtrunA17_Chr2g0306781 68.817 372 115 1 42 412 31 402 0.0 530
Msa0868140 MtrunA17_Chr3g0136561 56.905 420 170 3 1 409 484 903 1.45e-175 513
Msa0868140 MtrunA17_Chr2g0277841 54.015 411 185 3 2 410 44 452 2.05e-169 482
Msa0868140 MtrunA17_Chr1g0204301 52.334 407 192 2 3 407 78 484 1.11e-157 453
Msa0868140 MtrunA17_Chr2g0295781 52.099 405 191 2 7 409 48 451 1.37e-156 449
Msa0868140 MtrunA17_Chr6g0480561 53.902 410 185 3 5 411 62 470 9.07e-156 448
Msa0868140 MtrunA17_Chr2g0282281 53.671 395 180 1 4 398 109 500 2.79e-155 448
Msa0868140 MtrunA17_Chr3g0115021 51.843 407 193 3 3 407 78 483 1.17e-150 436
Msa0868140 MtrunA17_Chr3g0115041 51.843 407 193 3 3 407 78 483 1.29e-150 436
Msa0868140 MtrunA17_Chr7g0250661 68.493 292 91 1 122 412 1 292 8.89e-150 426
Msa0868140 MtrunA17_Chr6g0469631 51.365 403 193 3 7 407 81 482 1.46e-141 412
Msa0868140 MtrunA17_Chr7g0276241 61.168 291 105 2 122 409 1 286 5.15e-136 391
Msa0868140 MtrunA17_Chr1g0212951 39.394 429 230 6 3 406 28 451 5.68e-110 332
Msa0868140 MtrunA17_Chr4g0030601 40.244 410 236 5 3 406 27 433 1.41e-108 327
Msa0868140 MtrunA17_Chr2g0327721 41.135 423 229 7 3 408 27 446 5.10e-108 327
Msa0868140 MtrunA17_Chr4g0030591 39.623 424 228 7 3 406 27 442 4.46e-107 324
Msa0868140 MtrunA17_Chr4g0030581 40.191 418 233 6 3 406 27 441 2.93e-104 317
Msa0868140 MtrunA17_Chr6g0461631 52.941 255 119 1 157 410 3 257 1.35e-99 297
Msa0868140 MtrunA17_Chr4g0026871 57.456 228 93 3 185 409 1 227 2.86e-92 277
Msa0868140 MtrunA17_Chr4g0026791 57.542 179 75 1 185 362 1 179 3.10e-68 214
Msa0868140 MtrunA17_Chr4g0026721 56.875 160 66 2 252 409 1 159 9.62e-60 191
Msa0868140 MtrunA17_Chr6g0461621 49.057 159 81 0 1 159 61 219 3.52e-45 156
Msa0868140 MtrunA17_Chr4g0026861 48.387 155 80 0 5 159 60 214 4.87e-45 155
Msa0868140 MtrunA17_Chr7g0250651 47.778 90 47 0 1 90 96 185 9.67e-21 89.4
Msa0868140 MtrunA17_Chr4g0026801 37.000 100 63 0 5 104 60 159 1.83e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868140 AT1G68530.1 85.060 415 62 0 1 415 83 497 0.0 761
Msa0868140 AT1G25450.1 82.892 415 71 0 1 415 78 492 0.0 752
Msa0868140 AT1G19440.1 68.059 407 130 0 1 407 106 512 0.0 615
Msa0868140 AT2G16280.1 68.460 409 129 0 1 409 102 510 0.0 613
Msa0868140 AT4G34510.1 65.122 410 142 1 1 409 76 485 0.0 578
Msa0868140 AT2G26640.1 62.228 413 155 1 1 412 94 506 0.0 551
Msa0868140 AT1G04220.1 62.500 416 148 3 3 410 101 516 0.0 548
Msa0868140 AT5G43760.1 63.007 419 146 4 3 413 107 524 0.0 543
Msa0868140 AT1G01120.1 60.827 411 159 1 3 411 118 528 0.0 542
Msa0868140 AT2G15090.1 57.554 417 169 2 1 409 63 479 0.0 520
Msa0868140 AT4G34520.1 56.699 418 170 2 3 409 73 490 4.48e-179 509
Msa0868140 AT2G26250.1 54.713 435 168 3 1 407 115 548 1.51e-176 504
Msa0868140 AT4G34250.1 55.904 415 177 1 1 409 73 487 1.82e-175 499
Msa0868140 AT2G46720.1 53.902 410 186 1 3 409 56 465 2.01e-174 496
Msa0868140 AT1G68530.2 78.521 284 55 1 1 284 83 360 2.83e-167 474
Msa0868140 AT3G10280.1 52.439 410 185 2 3 409 56 458 2.85e-166 474
Msa0868140 AT1G71160.1 51.225 408 197 2 1 407 40 446 1.05e-160 461
Msa0868140 AT5G49070.1 52.311 411 186 2 7 411 51 457 4.29e-153 441
Msa0868140 AT3G52160.1 45.729 398 184 3 2 398 83 449 4.34e-130 382
Msa0868140 AT3G52160.2 47.922 361 156 3 39 398 7 336 1.56e-123 361
Msa0868140 AT2G28630.2 42.080 423 223 8 3 406 27 446 2.30e-111 335
Msa0868140 AT2G28630.1 42.080 423 223 8 3 406 27 446 2.30e-111 335
Msa0868140 AT5G04530.1 40.777 412 229 6 5 406 31 437 2.73e-108 327
Msa0868140 AT1G07720.1 40.811 419 225 6 8 406 32 447 1.32e-107 326
Msa0868140 AT1G07720.2 40.811 419 225 6 8 406 75 490 3.33e-107 326
Msa0868140 AT5G49070.2 50.190 263 131 0 7 269 51 313 2.13e-88 271

Find 77 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATCTTCTTCATCTTTA+TGG 0.117063 6_1:-1617032 Msa0868140:CDS
ATTTAGAGCTTAACAATTTC+AGG 0.190374 6_1:+1616832 None:intergenic
CGTCCCTTTCGCTACTTTCA+TGG 0.215185 6_1:-1617994 Msa0868140:CDS
TTCACTTCAAAAGGATCTTA+TGG 0.218445 6_1:-1617325 Msa0868140:CDS
CGTCTTGCTTCTTCCATTGT+TGG 0.258187 6_1:+1617846 None:intergenic
GCTTCTTCCATTGTTGGTTT+AGG 0.276327 6_1:+1617852 None:intergenic
TGAAGAGAGGTGATAGAGTA+TGG 0.287194 6_1:-1616975 Msa0868140:CDS
AGCATTAAGACACCTGTTAA+TGG 0.300750 6_1:-1616895 Msa0868140:CDS
TGTTTGAAATCAGGAATATA+AGG 0.323168 6_1:+1617177 None:intergenic
GGTGGGATGTAATGGATTGC+TGG 0.333428 6_1:+1617873 None:intergenic
GAAGACAGAGAAGGTAAAGT+TGG 0.348142 6_1:-1617351 Msa0868140:CDS
GAATGACGCTGCATCGATTC+GGG 0.353166 6_1:-1617056 Msa0868140:CDS
ACAACAACTGCGTTTGAATT+CGG 0.360073 6_1:+1617579 None:intergenic
AGAGTATGGCAAATAGCTTT+TGG 0.363430 6_1:-1616961 Msa0868140:CDS
ATCGTTCGAGAATTCTCATT+TGG 0.366002 6_1:+1617925 None:intergenic
AGCTTCAACCTCTCCGGAAT+GGG 0.368697 6_1:-1617657 Msa0868140:CDS
TTTAGCCCGCGATCTTCTTC+AGG 0.368914 6_1:-1617607 Msa0868140:CDS
ACCAAACTGTTTATTCAGAA+TGG 0.377309 6_1:-1617499 Msa0868140:CDS
AAATCAAATATAACAACTAT+TGG 0.388103 6_1:-1617282 Msa0868140:CDS
AACTCCTTCTTTGTCTGCTA+TGG 0.395630 6_1:-1617715 Msa0868140:CDS
AGTTGGAATTTCACTTCAAA+AGG 0.400364 6_1:-1617334 Msa0868140:CDS
TCTTCCCAAGGTCCATTAAC+AGG 0.401821 6_1:+1616883 None:intergenic
TCAAACGCTTGTTTGAAATC+AGG 0.404416 6_1:+1617168 None:intergenic
TCTTCCATTGTTGGTTTAGG+TGG 0.408011 6_1:+1617855 None:intergenic
CCCATTCTGAATAAACAGTT+TGG 0.412390 6_1:+1617498 None:intergenic
ATAAGAATGTCTATGTCCTT+AGG 0.415605 6_1:+1617762 None:intergenic
AGAATGACGCTGCATCGATT+CGG 0.416495 6_1:-1617057 Msa0868140:CDS
GATACCTTGTTTGCGAAAAC+CGG 0.424265 6_1:-1617792 Msa0868140:CDS
ACAATTTCAGGAATATGAAC+AGG 0.425455 6_1:+1616844 None:intergenic
AAAGGGACGCGGCAAGTAAT+CGG 0.425547 6_1:+1618008 None:intergenic
TTGGTTTAGGTGGGATGTAA+TGG 0.427468 6_1:+1617865 None:intergenic
ATTCTCGAACGATCTGGTCT+TGG 0.430456 6_1:-1617915 Msa0868140:CDS
CCAAACTGTTTATTCAGAAT+GGG 0.431991 6_1:-1617498 Msa0868140:CDS
CTTCCATTGTTGGTTTAGGT+GGG 0.436694 6_1:+1617856 None:intergenic
TTGAACTATATTGAATCAAA+AGG 0.463579 6_1:-1617003 Msa0868140:CDS
GACACCTGTTAATGGACCTT+GGG 0.463994 6_1:-1616887 Msa0868140:CDS
ACCCGCGCTACATCCCATTC+CGG 0.483459 6_1:+1617644 None:intergenic
ATGAGAATTCTCGAACGATC+TGG 0.483710 6_1:-1617921 Msa0868140:CDS
GCTTGTTATCTTCTCATCCA+TGG 0.488002 6_1:-1617814 Msa0868140:CDS
AGTAATCGGCGGTTTGAAGC+AGG 0.491235 6_1:+1618022 None:intergenic
AAGAGTAATTGTTCTGAAGC+AGG 0.493059 6_1:+1617246 None:intergenic
ATCAAGAGCTTCAACCTCTC+CGG 0.495473 6_1:-1617663 Msa0868140:CDS
GAGCTTCAACCTCTCCGGAA+TGG 0.499688 6_1:-1617658 Msa0868140:CDS
TATGTCCTTAGGTTTGAGTC+CGG 0.505098 6_1:+1617773 None:intergenic
AGACACCTGTTAATGGACCT+TGG 0.510300 6_1:-1616888 Msa0868140:CDS
AAGATCGCGGGCTAAATCAA+TGG 0.510668 6_1:+1617614 None:intergenic
TCCGGAATGGGATGTAGCGC+GGG 0.514072 6_1:-1617645 Msa0868140:CDS
AAGGATCTTATGGCTATAGC+TGG 0.515207 6_1:-1617315 Msa0868140:CDS
CTCCGGAATGGGATGTAGCG+CGG 0.535668 6_1:-1617646 Msa0868140:CDS
TTTCGCAAACAAGGTATCCA+TGG 0.546419 6_1:+1617797 None:intergenic
AAGAAGGAGTTGGAGAAAAG+AGG 0.546500 6_1:+1617727 None:intergenic
ATAGCAGACAAAGAAGGAGT+TGG 0.559010 6_1:+1617717 None:intergenic
CATCCCACCTAAACCAACAA+TGG 0.566152 6_1:-1617859 Msa0868140:CDS
TCAAAAGGAAGGATGAAGAG+AGG 0.574451 6_1:-1616988 Msa0868140:CDS
ATTACTCCAAACTATTACCA+AGG 0.582645 6_1:-1617543 Msa0868140:CDS
GTTCCATGAAAGTAGCGAAA+GGG 0.584347 6_1:+1617991 None:intergenic
TGAAAGTAGCGAAAGGGACG+CGG 0.588590 6_1:+1617997 None:intergenic
TTCGAAGAAGAAGACAGAGA+AGG 0.591426 6_1:-1617360 Msa0868140:CDS
ACTATATTGAATCAAAAGGA+AGG 0.597855 6_1:-1616999 Msa0868140:CDS
CTTCTGTAACTCATCGATCA+CGG 0.605553 6_1:+1617116 None:intergenic
ATCACCATAGCAGACAAAGA+AGG 0.610156 6_1:+1617711 None:intergenic
ATAAACCTGAAGAAGATCGC+GGG 0.612944 6_1:+1617602 None:intergenic
AACTGTTTATTCAGAATGGG+TGG 0.613269 6_1:-1617495 Msa0868140:CDS
GGATGAGAAGATAACAAGCT+CGG 0.613593 6_1:+1617818 None:intergenic
TGTTCCATGAAAGTAGCGAA+AGG 0.619184 6_1:+1617990 None:intergenic
CTTCTTCTTCGAAAACGCAA+CGG 0.633833 6_1:+1617370 None:intergenic
GAAAACCGGACTCAAACCTA+AGG 0.634039 6_1:-1617778 Msa0868140:CDS
TGAAGCAGGCATAATCGACT+AGG 0.636758 6_1:+1618036 None:intergenic
TCTGAAGCAGGTAGAACAAG+AGG 0.638656 6_1:+1617258 None:intergenic
CGATCAATGCAATCTTCCCA+AGG 0.639317 6_1:+1616871 None:intergenic
GCTATCTGCTGAACATGTCG+AGG 0.645995 6_1:-1617085 Msa0868140:CDS
CGCTACATCCCATTCCGGAG+AGG 0.648049 6_1:+1617649 None:intergenic
CAAGTTGTTAGAACTCACAA+AGG 0.665486 6_1:-1617411 Msa0868140:CDS
GATAAACCTGAAGAAGATCG+CGG 0.670461 6_1:+1617601 None:intergenic
GTTGTTAGAACTCACAAAGG+AGG 0.692073 6_1:-1617408 Msa0868140:CDS
GGGATGTAATGGATTGCTGG+TGG 0.704587 6_1:+1617876 None:intergenic
TTAAATGCAATAGTGCTGTG+TGG 0.711523 6_1:-1616930 Msa0868140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAATATAACAACTAT+TGG - chr6_1:1617611-1617630 Msa0868140:CDS 15.0%
!! AAATCAAATATAACAACTAT+TGG - chr6_1:1617611-1617630 Msa0868140:CDS 15.0%
!! TTGAACTATATTGAATCAAA+AGG - chr6_1:1617890-1617909 Msa0868140:CDS 20.0%
!! TTGAACTATATTGAATCAAA+AGG - chr6_1:1617890-1617909 Msa0868140:CDS 20.0%
!! TGTTTGAAATCAGGAATATA+AGG + chr6_1:1617719-1617738 None:intergenic 25.0%
! ACTATATTGAATCAAAAGGA+AGG - chr6_1:1617894-1617913 Msa0868140:CDS 25.0%
!! TGTTTGAAATCAGGAATATA+AGG + chr6_1:1617719-1617738 None:intergenic 25.0%
! ACTATATTGAATCAAAAGGA+AGG - chr6_1:1617894-1617913 Msa0868140:CDS 25.0%
ATAAGAATGTCTATGTCCTT+AGG + chr6_1:1617134-1617153 None:intergenic 30.0%
ATTACTCCAAACTATTACCA+AGG - chr6_1:1617350-1617369 Msa0868140:CDS 30.0%
!! TCTTTTCCTTGGTAATAGTT+TGG + chr6_1:1617359-1617378 None:intergenic 30.0%
ACCAAACTGTTTATTCAGAA+TGG - chr6_1:1617394-1617413 Msa0868140:CDS 30.0%
CCAAACTGTTTATTCAGAAT+GGG - chr6_1:1617395-1617414 Msa0868140:CDS 30.0%
AGTTGGAATTTCACTTCAAA+AGG - chr6_1:1617559-1617578 Msa0868140:CDS 30.0%
TTCACTTCAAAAGGATCTTA+TGG - chr6_1:1617568-1617587 Msa0868140:CDS 30.0%
! GGAATATAAGGCTTCATTTT+AGG + chr6_1:1617707-1617726 None:intergenic 30.0%
! ATTTTTGTATTCATGCTGGT+GGG - chr6_1:1617750-1617769 Msa0868140:CDS 30.0%
ACACATCTTCTTCATCTTTA+TGG - chr6_1:1617861-1617880 Msa0868140:CDS 30.0%
ACAATTTCAGGAATATGAAC+AGG + chr6_1:1618052-1618071 None:intergenic 30.0%
ATAAGAATGTCTATGTCCTT+AGG + chr6_1:1617134-1617153 None:intergenic 30.0%
ATTACTCCAAACTATTACCA+AGG - chr6_1:1617350-1617369 Msa0868140:CDS 30.0%
!! TCTTTTCCTTGGTAATAGTT+TGG + chr6_1:1617359-1617378 None:intergenic 30.0%
ACCAAACTGTTTATTCAGAA+TGG - chr6_1:1617394-1617413 Msa0868140:CDS 30.0%
CCAAACTGTTTATTCAGAAT+GGG - chr6_1:1617395-1617414 Msa0868140:CDS 30.0%
AGTTGGAATTTCACTTCAAA+AGG - chr6_1:1617559-1617578 Msa0868140:CDS 30.0%
TTCACTTCAAAAGGATCTTA+TGG - chr6_1:1617568-1617587 Msa0868140:CDS 30.0%
! GGAATATAAGGCTTCATTTT+AGG + chr6_1:1617707-1617726 None:intergenic 30.0%
! ATTTTTGTATTCATGCTGGT+GGG - chr6_1:1617750-1617769 Msa0868140:CDS 30.0%
ACACATCTTCTTCATCTTTA+TGG - chr6_1:1617861-1617880 Msa0868140:CDS 30.0%
ACAATTTCAGGAATATGAAC+AGG + chr6_1:1618052-1618071 None:intergenic 30.0%
!! ATTTGGAACTCAACGCTTTT+CGG + chr6_1:1616954-1616973 None:intergenic 35.0%
ATCGTTCGAGAATTCTCATT+TGG + chr6_1:1616971-1616990 None:intergenic 35.0%
ACAACAACTGCGTTTGAATT+CGG + chr6_1:1617317-1617336 None:intergenic 35.0%
CCCATTCTGAATAAACAGTT+TGG + chr6_1:1617398-1617417 None:intergenic 35.0%
AACTGTTTATTCAGAATGGG+TGG - chr6_1:1617398-1617417 Msa0868140:CDS 35.0%
CAAGTTGTTAGAACTCACAA+AGG - chr6_1:1617482-1617501 Msa0868140:CDS 35.0%
!! AAGAGTAATTGTTCTGAAGC+AGG + chr6_1:1617650-1617669 None:intergenic 35.0%
! CTCTTTCTTTTCACACTCAT+TGG - chr6_1:1617665-1617684 Msa0868140:CDS 35.0%
! TCAAACGCTTGTTTGAAATC+AGG + chr6_1:1617728-1617747 None:intergenic 35.0%
! GAGCATTTTTGTATTCATGC+TGG - chr6_1:1617746-1617765 Msa0868140:CDS 35.0%
! CATTTTTGTATTCATGCTGG+TGG - chr6_1:1617749-1617768 Msa0868140:CDS 35.0%
! AGAGTATGGCAAATAGCTTT+TGG - chr6_1:1617932-1617951 Msa0868140:CDS 35.0%
TTAAATGCAATAGTGCTGTG+TGG - chr6_1:1617963-1617982 Msa0868140:CDS 35.0%
AGCATTAAGACACCTGTTAA+TGG - chr6_1:1617998-1618017 Msa0868140:CDS 35.0%
!! ATTTGGAACTCAACGCTTTT+CGG + chr6_1:1616954-1616973 None:intergenic 35.0%
ATCGTTCGAGAATTCTCATT+TGG + chr6_1:1616971-1616990 None:intergenic 35.0%
ACAACAACTGCGTTTGAATT+CGG + chr6_1:1617317-1617336 None:intergenic 35.0%
CCCATTCTGAATAAACAGTT+TGG + chr6_1:1617398-1617417 None:intergenic 35.0%
AACTGTTTATTCAGAATGGG+TGG - chr6_1:1617398-1617417 Msa0868140:CDS 35.0%
CAAGTTGTTAGAACTCACAA+AGG - chr6_1:1617482-1617501 Msa0868140:CDS 35.0%
!! AAGAGTAATTGTTCTGAAGC+AGG + chr6_1:1617650-1617669 None:intergenic 35.0%
! CTCTTTCTTTTCACACTCAT+TGG - chr6_1:1617665-1617684 Msa0868140:CDS 35.0%
! TCAAACGCTTGTTTGAAATC+AGG + chr6_1:1617728-1617747 None:intergenic 35.0%
! GAGCATTTTTGTATTCATGC+TGG - chr6_1:1617746-1617765 Msa0868140:CDS 35.0%
! CATTTTTGTATTCATGCTGG+TGG - chr6_1:1617749-1617768 Msa0868140:CDS 35.0%
! AGAGTATGGCAAATAGCTTT+TGG - chr6_1:1617932-1617951 Msa0868140:CDS 35.0%
TTAAATGCAATAGTGCTGTG+TGG - chr6_1:1617963-1617982 Msa0868140:CDS 35.0%
AGCATTAAGACACCTGTTAA+TGG - chr6_1:1617998-1618017 Msa0868140:CDS 35.0%
GTTCCATGAAAGTAGCGAAA+GGG + chr6_1:1616905-1616924 None:intergenic 40.0%
TGTTCCATGAAAGTAGCGAA+AGG + chr6_1:1616906-1616925 None:intergenic 40.0%
!! TTTGGAACTCAACGCTTTTC+GGG + chr6_1:1616953-1616972 None:intergenic 40.0%
ATGAGAATTCTCGAACGATC+TGG - chr6_1:1616972-1616991 Msa0868140:CDS 40.0%
TTGGTTTAGGTGGGATGTAA+TGG + chr6_1:1617031-1617050 None:intergenic 40.0%
!! CTTCCATTGTTGGTTTAGGT+GGG + chr6_1:1617040-1617059 None:intergenic 40.0%
!! TCTTCCATTGTTGGTTTAGG+TGG + chr6_1:1617041-1617060 None:intergenic 40.0%
!! GCTTCTTCCATTGTTGGTTT+AGG + chr6_1:1617044-1617063 None:intergenic 40.0%
GGATGAGAAGATAACAAGCT+CGG + chr6_1:1617078-1617097 None:intergenic 40.0%
!! GCTTGTTATCTTCTCATCCA+TGG - chr6_1:1617079-1617098 Msa0868140:CDS 40.0%
! TTTCGCAAACAAGGTATCCA+TGG + chr6_1:1617099-1617118 None:intergenic 40.0%
! GATACCTTGTTTGCGAAAAC+CGG - chr6_1:1617101-1617120 Msa0868140:CDS 40.0%
TATGTCCTTAGGTTTGAGTC+CGG + chr6_1:1617123-1617142 None:intergenic 40.0%
AAGAAGGAGTTGGAGAAAAG+AGG + chr6_1:1617169-1617188 None:intergenic 40.0%
ATAGCAGACAAAGAAGGAGT+TGG + chr6_1:1617179-1617198 None:intergenic 40.0%
AACTCCTTCTTTGTCTGCTA+TGG - chr6_1:1617178-1617197 Msa0868140:CDS 40.0%
ATCACCATAGCAGACAAAGA+AGG + chr6_1:1617185-1617204 None:intergenic 40.0%
ATAAACCTGAAGAAGATCGC+GGG + chr6_1:1617294-1617313 None:intergenic 40.0%
GATAAACCTGAAGAAGATCG+CGG + chr6_1:1617295-1617314 None:intergenic 40.0%
! GCATTGCTCTTTCTTTTCCT+TGG + chr6_1:1617370-1617389 None:intergenic 40.0%
GTTGTTAGAACTCACAAAGG+AGG - chr6_1:1617485-1617504 Msa0868140:CDS 40.0%
CTTCTTCTTCGAAAACGCAA+CGG + chr6_1:1617526-1617545 None:intergenic 40.0%
TTCGAAGAAGAAGACAGAGA+AGG - chr6_1:1617533-1617552 Msa0868140:CDS 40.0%
GAAGACAGAGAAGGTAAAGT+TGG - chr6_1:1617542-1617561 Msa0868140:CDS 40.0%
AAGGATCTTATGGCTATAGC+TGG - chr6_1:1617578-1617597 Msa0868140:CDS 40.0%
CTTCTGTAACTCATCGATCA+CGG + chr6_1:1617780-1617799 None:intergenic 40.0%
TCAAAAGGAAGGATGAAGAG+AGG - chr6_1:1617905-1617924 Msa0868140:CDS 40.0%
TGAAGAGAGGTGATAGAGTA+TGG - chr6_1:1617918-1617937 Msa0868140:CDS 40.0%
!! TGGCAAATAGCTTTTGGAAG+TGG - chr6_1:1617938-1617957 Msa0868140:CDS 40.0%
GTTCCATGAAAGTAGCGAAA+GGG + chr6_1:1616905-1616924 None:intergenic 40.0%
TGTTCCATGAAAGTAGCGAA+AGG + chr6_1:1616906-1616925 None:intergenic 40.0%
!! TTTGGAACTCAACGCTTTTC+GGG + chr6_1:1616953-1616972 None:intergenic 40.0%
ATGAGAATTCTCGAACGATC+TGG - chr6_1:1616972-1616991 Msa0868140:CDS 40.0%
TTGGTTTAGGTGGGATGTAA+TGG + chr6_1:1617031-1617050 None:intergenic 40.0%
!! CTTCCATTGTTGGTTTAGGT+GGG + chr6_1:1617040-1617059 None:intergenic 40.0%
!! TCTTCCATTGTTGGTTTAGG+TGG + chr6_1:1617041-1617060 None:intergenic 40.0%
!! GCTTCTTCCATTGTTGGTTT+AGG + chr6_1:1617044-1617063 None:intergenic 40.0%
GGATGAGAAGATAACAAGCT+CGG + chr6_1:1617078-1617097 None:intergenic 40.0%
!! GCTTGTTATCTTCTCATCCA+TGG - chr6_1:1617079-1617098 Msa0868140:CDS 40.0%
! TTTCGCAAACAAGGTATCCA+TGG + chr6_1:1617099-1617118 None:intergenic 40.0%
! GATACCTTGTTTGCGAAAAC+CGG - chr6_1:1617101-1617120 Msa0868140:CDS 40.0%
TATGTCCTTAGGTTTGAGTC+CGG + chr6_1:1617123-1617142 None:intergenic 40.0%
AAGAAGGAGTTGGAGAAAAG+AGG + chr6_1:1617169-1617188 None:intergenic 40.0%
ATAGCAGACAAAGAAGGAGT+TGG + chr6_1:1617179-1617198 None:intergenic 40.0%
AACTCCTTCTTTGTCTGCTA+TGG - chr6_1:1617178-1617197 Msa0868140:CDS 40.0%
ATCACCATAGCAGACAAAGA+AGG + chr6_1:1617185-1617204 None:intergenic 40.0%
ATAAACCTGAAGAAGATCGC+GGG + chr6_1:1617294-1617313 None:intergenic 40.0%
GATAAACCTGAAGAAGATCG+CGG + chr6_1:1617295-1617314 None:intergenic 40.0%
! GCATTGCTCTTTCTTTTCCT+TGG + chr6_1:1617370-1617389 None:intergenic 40.0%
GTTGTTAGAACTCACAAAGG+AGG - chr6_1:1617485-1617504 Msa0868140:CDS 40.0%
CTTCTTCTTCGAAAACGCAA+CGG + chr6_1:1617526-1617545 None:intergenic 40.0%
TTCGAAGAAGAAGACAGAGA+AGG - chr6_1:1617533-1617552 Msa0868140:CDS 40.0%
GAAGACAGAGAAGGTAAAGT+TGG - chr6_1:1617542-1617561 Msa0868140:CDS 40.0%
AAGGATCTTATGGCTATAGC+TGG - chr6_1:1617578-1617597 Msa0868140:CDS 40.0%
CTTCTGTAACTCATCGATCA+CGG + chr6_1:1617780-1617799 None:intergenic 40.0%
TCAAAAGGAAGGATGAAGAG+AGG - chr6_1:1617905-1617924 Msa0868140:CDS 40.0%
TGAAGAGAGGTGATAGAGTA+TGG - chr6_1:1617918-1617937 Msa0868140:CDS 40.0%
!! TGGCAAATAGCTTTTGGAAG+TGG - chr6_1:1617938-1617957 Msa0868140:CDS 40.0%
TGAAGCAGGCATAATCGACT+AGG + chr6_1:1616860-1616879 None:intergenic 45.0%
ATTCTCGAACGATCTGGTCT+TGG - chr6_1:1616978-1616997 Msa0868140:CDS 45.0%
CATCCCACCTAAACCAACAA+TGG - chr6_1:1617034-1617053 Msa0868140:CDS 45.0%
CGTCTTGCTTCTTCCATTGT+TGG + chr6_1:1617050-1617069 None:intergenic 45.0%
GAAAACCGGACTCAAACCTA+AGG - chr6_1:1617115-1617134 Msa0868140:CDS 45.0%
ATCAAGAGCTTCAACCTCTC+CGG - chr6_1:1617230-1617249 Msa0868140:CDS 45.0%
! AAGATCGCGGGCTAAATCAA+TGG + chr6_1:1617282-1617301 None:intergenic 45.0%
! TCTGAAGCAGGTAGAACAAG+AGG + chr6_1:1617638-1617657 None:intergenic 45.0%
!! AGAATGACGCTGCATCGATT+CGG - chr6_1:1617836-1617855 Msa0868140:CDS 45.0%
! AGACACCTGTTAATGGACCT+TGG - chr6_1:1618005-1618024 Msa0868140:CDS 45.0%
! GACACCTGTTAATGGACCTT+GGG - chr6_1:1618006-1618025 Msa0868140:CDS 45.0%
TCTTCCCAAGGTCCATTAAC+AGG + chr6_1:1618013-1618032 None:intergenic 45.0%
CGATCAATGCAATCTTCCCA+AGG + chr6_1:1618025-1618044 None:intergenic 45.0%
TGAAGCAGGCATAATCGACT+AGG + chr6_1:1616860-1616879 None:intergenic 45.0%
ATTCTCGAACGATCTGGTCT+TGG - chr6_1:1616978-1616997 Msa0868140:CDS 45.0%
CATCCCACCTAAACCAACAA+TGG - chr6_1:1617034-1617053 Msa0868140:CDS 45.0%
CGTCTTGCTTCTTCCATTGT+TGG + chr6_1:1617050-1617069 None:intergenic 45.0%
GAAAACCGGACTCAAACCTA+AGG - chr6_1:1617115-1617134 Msa0868140:CDS 45.0%
ATCAAGAGCTTCAACCTCTC+CGG - chr6_1:1617230-1617249 Msa0868140:CDS 45.0%
! AAGATCGCGGGCTAAATCAA+TGG + chr6_1:1617282-1617301 None:intergenic 45.0%
! TCTGAAGCAGGTAGAACAAG+AGG + chr6_1:1617638-1617657 None:intergenic 45.0%
!! AGAATGACGCTGCATCGATT+CGG - chr6_1:1617836-1617855 Msa0868140:CDS 45.0%
! AGACACCTGTTAATGGACCT+TGG - chr6_1:1618005-1618024 Msa0868140:CDS 45.0%
! GACACCTGTTAATGGACCTT+GGG - chr6_1:1618006-1618025 Msa0868140:CDS 45.0%
TCTTCCCAAGGTCCATTAAC+AGG + chr6_1:1618013-1618032 None:intergenic 45.0%
CGATCAATGCAATCTTCCCA+AGG + chr6_1:1618025-1618044 None:intergenic 45.0%
! AGTAATCGGCGGTTTGAAGC+AGG + chr6_1:1616874-1616893 None:intergenic 50.0%
AAAGGGACGCGGCAAGTAAT+CGG + chr6_1:1616888-1616907 None:intergenic 50.0%
TGAAAGTAGCGAAAGGGACG+CGG + chr6_1:1616899-1616918 None:intergenic 50.0%
! CGTCCCTTTCGCTACTTTCA+TGG - chr6_1:1616899-1616918 Msa0868140:CDS 50.0%
!!! CGCTTTTCGGGTTGTTCTTG+AGG + chr6_1:1616941-1616960 None:intergenic 50.0%
!! GGGATGTAATGGATTGCTGG+TGG + chr6_1:1617020-1617039 None:intergenic 50.0%
!! GGTGGGATGTAATGGATTGC+TGG + chr6_1:1617023-1617042 None:intergenic 50.0%
! GAGTCCGGTTTTCGCAAACA+AGG + chr6_1:1617108-1617127 None:intergenic 50.0%
AGCTTCAACCTCTCCGGAAT+GGG - chr6_1:1617236-1617255 Msa0868140:CDS 50.0%
TTTAGCCCGCGATCTTCTTC+AGG - chr6_1:1617286-1617305 Msa0868140:CDS 50.0%
GCTATCTGCTGAACATGTCG+AGG - chr6_1:1617808-1617827 Msa0868140:CDS 50.0%
!! GAATGACGCTGCATCGATTC+GGG - chr6_1:1617837-1617856 Msa0868140:CDS 50.0%
! AGTAATCGGCGGTTTGAAGC+AGG + chr6_1:1616874-1616893 None:intergenic 50.0%
AAAGGGACGCGGCAAGTAAT+CGG + chr6_1:1616888-1616907 None:intergenic 50.0%
TGAAAGTAGCGAAAGGGACG+CGG + chr6_1:1616899-1616918 None:intergenic 50.0%
! CGTCCCTTTCGCTACTTTCA+TGG - chr6_1:1616899-1616918 Msa0868140:CDS 50.0%
!!! CGCTTTTCGGGTTGTTCTTG+AGG + chr6_1:1616941-1616960 None:intergenic 50.0%
!! GGGATGTAATGGATTGCTGG+TGG + chr6_1:1617020-1617039 None:intergenic 50.0%
!! GGTGGGATGTAATGGATTGC+TGG + chr6_1:1617023-1617042 None:intergenic 50.0%
! GAGTCCGGTTTTCGCAAACA+AGG + chr6_1:1617108-1617127 None:intergenic 50.0%
AGCTTCAACCTCTCCGGAAT+GGG - chr6_1:1617236-1617255 Msa0868140:CDS 50.0%
TTTAGCCCGCGATCTTCTTC+AGG - chr6_1:1617286-1617305 Msa0868140:CDS 50.0%
GCTATCTGCTGAACATGTCG+AGG - chr6_1:1617808-1617827 Msa0868140:CDS 50.0%
!! GAATGACGCTGCATCGATTC+GGG - chr6_1:1617837-1617856 Msa0868140:CDS 50.0%
TCGACTAGGTAGATTGCGCG+TGG + chr6_1:1616846-1616865 None:intergenic 55.0%
GAGCTTCAACCTCTCCGGAA+TGG - chr6_1:1617235-1617254 Msa0868140:CDS 55.0%
TCGACTAGGTAGATTGCGCG+TGG + chr6_1:1616846-1616865 None:intergenic 55.0%
GAGCTTCAACCTCTCCGGAA+TGG - chr6_1:1617235-1617254 Msa0868140:CDS 55.0%
CGCTACATCCCATTCCGGAG+AGG + chr6_1:1617247-1617266 None:intergenic 60.0%
CTCCGGAATGGGATGTAGCG+CGG - chr6_1:1617247-1617266 Msa0868140:CDS 60.0%
TCCGGAATGGGATGTAGCGC+GGG - chr6_1:1617248-1617267 Msa0868140:CDS 60.0%
ACCCGCGCTACATCCCATTC+CGG + chr6_1:1617252-1617271 None:intergenic 60.0%
CGCTACATCCCATTCCGGAG+AGG + chr6_1:1617247-1617266 None:intergenic 60.0%
CTCCGGAATGGGATGTAGCG+CGG - chr6_1:1617247-1617266 Msa0868140:CDS 60.0%
TCCGGAATGGGATGTAGCGC+GGG - chr6_1:1617248-1617267 Msa0868140:CDS 60.0%
ACCCGCGCTACATCCCATTC+CGG + chr6_1:1617252-1617271 None:intergenic 60.0%
GGGACGCGGCAAGTAATCGG+CGG + chr6_1:1616885-1616904 None:intergenic 65.0%
GGGACGCGGCAAGTAATCGG+CGG + chr6_1:1616885-1616904 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 1616834 1618081 1616834 ID=Msa0868140;Name=Msa0868140
chr6_1 mRNA 1616834 1618081 1616834 ID=Msa0868140-mRNA-1;Parent=Msa0868140;Name=Msa0868140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|415
chr6_1 exon 1616834 1618081 1616834 ID=Msa0868140-mRNA-1:exon:440;Parent=Msa0868140-mRNA-1
chr6_1 CDS 1616834 1618081 1616834 ID=Msa0868140-mRNA-1:cds;Parent=Msa0868140-mRNA-1
Gene Sequence

>Msa0868140

ATGTTAAAGCCACGCGCAATCTACCTAGTCGATTATGCCTGCTTCAAACCGCCGATTACTTGCCGCGTCCCTTTCGCTACTTTCATGGAACATTCAAGACTAATCCTCAAGAACAACCCGAAAAGCGTTGAGTTCCAAATGAGAATTCTCGAACGATCTGGTCTTGGAGAAGAAACATGTTTGCCACCAGCAATCCATTACATCCCACCTAAACCAACAATGGAAGAAGCAAGACGCGAAGCCGAGCTTGTTATCTTCTCATCCATGGATACCTTGTTTGCGAAAACCGGACTCAAACCTAAGGACATAGACATTCTTATAGTCAATTGCAGCCTCTTTTCTCCAACTCCTTCTTTGTCTGCTATGGTGATCAACAAATACAAACTTAGAAGCAACATCAAGAGCTTCAACCTCTCCGGAATGGGATGTAGCGCGGGTTTAATCTCCATTGATTTAGCCCGCGATCTTCTTCAGGTTTATCCGAATTCAAACGCAGTTGTTGTGAGCACAGAAATCATTACTCCAAACTATTACCAAGGAAAAGAAAGAGCAATGCTTTTACCAAACTGTTTATTCAGAATGGGTGGTGCTGCTATTCTTTTATCAAACAAAAAAACAGAACACAAAAGAGCAAAATATAGATTGATGCAAGTTGTTAGAACTCACAAAGGAGGTGATGATAAAGCTTACCGTTGCGTTTTCGAAGAAGAAGACAGAGAAGGTAAAGTTGGAATTTCACTTCAAAAGGATCTTATGGCTATAGCTGGAGAAGCATTGAAATCAAATATAACAACTATTGGTCCTCTTGTTCTACCTGCTTCAGAACAATTACTCTTTCTTTTCACACTCATTGGAAAGAAAATCTTCAATCCTAAAATGAAGCCTTATATTCCTGATTTCAAACAAGCGTTTGAGCATTTTTGTATTCATGCTGGTGGGCGTGCCGTGATCGATGAGTTACAGAAGAATCTTCAGCTATCTGCTGAACATGTCGAGGCTTCAAGAATGACGCTGCATCGATTCGGGAACACATCTTCTTCATCTTTATGGTATGAATTGAACTATATTGAATCAAAAGGAAGGATGAAGAGAGGTGATAGAGTATGGCAAATAGCTTTTGGAAGTGGATTTAAATGCAATAGTGCTGTGTGGAAATGTAATAGAAGCATTAAGACACCTGTTAATGGACCTTGGGAAGATTGCATTGATCGATATCCTGTTCATATTCCTGAAATTGTTAAGCTCTAA

Protein sequence

>Msa0868140

MLKPRAIYLVDYACFKPPITCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMEEARREAELVIFSSMDTLFAKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVYPNSNAVVVSTEIITPNYYQGKERAMLLPNCLFRMGGAAILLSNKKTEHKRAKYRLMQVVRTHKGGDDKAYRCVFEEEDREGKVGISLQKDLMAIAGEALKSNITTIGPLVLPASEQLLFLFTLIGKKIFNPKMKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRVWQIAFGSGFKCNSAVWKCNRSIKTPVNGPWEDCIDRYPVHIPEIVKL*