AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313550 MtrunA17_Chr2g0283351 99.052 422 3 1 1 421 1 422 0.0 843
Msa0313550 MtrunA17_Chr4g0046081 85.075 402 57 1 23 421 19 420 0.0 702
Msa0313550 MtrunA17_Chr5g0396481 39.550 311 186 1 82 390 72 382 7.64e-63 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313550 AT5G45930.1 85.117 383 55 1 41 421 36 418 0.0 643
Msa0313550 AT4G18480.1 79.433 423 83 3 3 421 2 424 0.0 638
Msa0313550 AT1G08520.1 38.762 307 186 1 82 386 80 386 3.33e-62 214

Find 134 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGATCTTGATCAATT+TGG 0.148397 2_4:+8986318 None:intergenic
CCTGCTCGGTTTATCTTAAT+TGG 0.162278 2_4:-8986563 Msa0313550:CDS
CCCATGACTTCTGGATCTTC+TGG 0.163612 2_4:+8986887 None:intergenic
CGATTTACTTCCTGAAATTA+AGG 0.203719 2_4:-8986939 Msa0313550:CDS
GATTGGAGGTGTAATGATTA+TGG 0.219072 2_4:-8987005 Msa0313550:CDS
GTGAGAGATCGAGTTATAAA+AGG 0.250411 2_4:-8986857 Msa0313550:CDS
AACTGTAGTAGAAAGCTTTA+TGG 0.257689 2_4:-8987945 Msa0313550:CDS
TAGCAGTATAATATGAATAA+AGG 0.259027 2_4:+8988325 None:intergenic
ATCATTACACCTCCAATCTT+TGG 0.264491 2_4:+8987010 None:intergenic
GGCCTGAGCTCCCCTTCTTC+AGG 0.282009 2_4:+8986530 None:intergenic
TAAAGCTTTGGCTGCTCTTA+AGG 0.287507 2_4:-8986222 Msa0313550:CDS
TATTTATTTATAGCCTGATA+TGG 0.299156 2_4:-8985879 Msa0313550:three_prime_UTR
CGGTTTATCTTAATTGGTTC+GGG 0.302908 2_4:-8986557 Msa0313550:CDS
TGTTGATGAAGTTAATCTTT+TGG 0.310779 2_4:-8986669 Msa0313550:CDS
AGAAAGCTTTATGGAGGAAT+TGG 0.315276 2_4:-8987936 Msa0313550:CDS
ATGCTCAAGTCGGGACTGTT+AGG 0.321538 2_4:-8986481 Msa0313550:CDS
CCACAACTATTAGATAGATT+TGG 0.329771 2_4:-8986509 Msa0313550:CDS
TTCATAAATTTCTTGTATAC+AGG 0.330795 2_4:-8985944 Msa0313550:three_prime_UTR
AGCAGTATAATATGAATAAA+GGG 0.332217 2_4:+8988326 None:intergenic
TCGGTTTATCTTAATTGGTT+CGG 0.341266 2_4:-8986558 Msa0313550:CDS
CCATTGGAGTCAATAGATTC+AGG 0.345881 2_4:-8986125 Msa0313550:CDS
TCTTCTGGGTCTGAGTTATA+TGG 0.351902 2_4:+8986902 None:intergenic
CTACAACACATAACCATATC+AGG 0.354520 2_4:+8985866 None:intergenic
CCATGACTTCTGGATCTTCT+GGG 0.365705 2_4:+8986888 None:intergenic
TAAGTCTCTCGAAATTCCTT+TGG 0.366656 2_4:+8986404 None:intergenic
AACATGGTTGATTTGCCATT+AGG 0.368329 2_4:-8986803 Msa0313550:CDS
TGAGAGATCGAGTTATAAAA+GGG 0.371671 2_4:-8986856 Msa0313550:CDS
ATTGGAGGTGTAATGATTAT+GGG 0.375076 2_4:-8987004 Msa0313550:CDS
AGATTGTAGAGGAGAGAGCT+AGG 0.378530 2_4:-8986439 Msa0313550:CDS
ACTTCGACTCCCATGACTTC+TGG 0.379031 2_4:+8986878 None:intergenic
AGACGGTGTCTCAAGCAGTT+AGG 0.384711 2_4:+8986158 None:intergenic
CATTAGGAGCTACAGAAGAT+AGG 0.394363 2_4:-8986787 Msa0313550:CDS
GGTTAGAGAGAGAGTGTGAA+TGG 0.402142 2_4:+8988077 None:intergenic
AAAGCTTTGGCTGCTCTTAA+GGG 0.402953 2_4:-8986221 Msa0313550:CDS
ATCTGTGAGCTTCTCCTGCT+CGG 0.406916 2_4:+8986376 None:intergenic
GCAGATGGCATGCTTCCTAT+TGG 0.415599 2_4:+8988250 None:intergenic
TATGGTTATGTGTTGTAGTA+AGG 0.417386 2_4:-8985861 Msa0313550:three_prime_UTR
GTTGTTGAAGACATAGTTGA+AGG 0.419164 2_4:+8988162 None:intergenic
CCGGATGGTGGGAGGCCAAT+AGG 0.419967 2_4:-8988265 Msa0313550:five_prime_UTR
TTGTTGGATTCTGCTGCATC+AGG 0.426710 2_4:-8986626 Msa0313550:CDS
CTATCTTCTGTAGCTCCTAA+TGG 0.430630 2_4:+8986788 None:intergenic
TCACTTGGTTGATGTGTTGT+TGG 0.430871 2_4:-8986642 Msa0313550:CDS
AGAGAGAGAGTGTGAATGGA+AGG 0.431677 2_4:+8988081 None:intergenic
GAGAGTGTGAATGGAAGGGT+TGG 0.431700 2_4:+8988086 None:intergenic
ATCAACTACGGTTAGGTCAT+TGG 0.437961 2_4:-8986963 Msa0313550:CDS
AACGTGATTGATCCAAAGAT+TGG 0.439659 2_4:-8987022 Msa0313550:CDS
TCAGTGGCAACATTAACAAC+AGG 0.445906 2_4:+8987882 None:intergenic
GACGGTGTCTCAAGCAGTTA+GGG 0.450521 2_4:+8986159 None:intergenic
AATCTATCTATCTTCTTATC+CGG 0.450606 2_4:-8988284 Msa0313550:five_prime_UTR
TTAGAATTTAACCTTTCCTA+TGG 0.452291 2_4:-8985998 Msa0313550:three_prime_UTR
ATCCTGAAGAAGGGGAGCTC+AGG 0.452372 2_4:-8986532 Msa0313550:CDS
TGAAGTTAACTCTGTAGAAC+AGG 0.454733 2_4:-8987862 Msa0313550:intron
AAACAGAGCTGCTAAAGCTT+TGG 0.461836 2_4:-8986234 Msa0313550:CDS
TCTTTGGATCAATCACGTTA+AGG 0.470100 2_4:+8987026 None:intergenic
CAAAAGGGTACACCGGCCTC+TGG 0.473741 2_4:+8987089 None:intergenic
GGTGTCAAGGCATTTGAGCC+TGG 0.474133 2_4:-8986725 Msa0313550:CDS
CCCAGAAGATCCAGAAGTCA+TGG 0.480402 2_4:-8986888 Msa0313550:CDS
TGTCCTACTATCGCAGCAAA+AGG 0.481621 2_4:+8987073 None:intergenic
ATCTCAAGGTGAAAATCTCT+AGG 0.491689 2_4:-8986304 Msa0313550:CDS
TTGGAATGCATGCTCAAGTC+GGG 0.491946 2_4:-8986490 Msa0313550:CDS
ATTGGAATTAGTAGCACAAA+GGG 0.494468 2_4:-8987918 Msa0313550:CDS
TTTCTATCTCGCATCCTGCT+CGG 0.495735 2_4:-8986577 Msa0313550:CDS
CCTATTGGCCTCCCACCATC+CGG 0.496429 2_4:+8988265 None:intergenic
GTGTGAATGGAAGGGTTGGA+AGG 0.502705 2_4:+8988090 None:intergenic
AGCTCTCACTGAGGGTGTCA+AGG 0.503283 2_4:-8986738 Msa0313550:CDS
CCTGAATCTATTGACTCCAA+TGG 0.518336 2_4:+8986125 None:intergenic
CAGGGAAATCAACTACGGTT+AGG 0.519735 2_4:-8986970 Msa0313550:CDS
GAGAGAGAGTGTGAATGGAA+GGG 0.521667 2_4:+8988082 None:intergenic
TGCTCAAGTCGGGACTGTTA+GGG 0.522981 2_4:-8986480 Msa0313550:CDS
CTTGAGACACCGTCTTAGAA+AGG 0.523882 2_4:-8986150 Msa0313550:CDS
GAATTTAACCTTTCCTATGG+CGG 0.526063 2_4:-8985995 Msa0313550:three_prime_UTR
TGGTTATGTGTTGTAGTAAG+GGG 0.530247 2_4:-8985859 Msa0313550:three_prime_UTR
TTCTAAAGAAAGCCAGAGGC+CGG 0.532237 2_4:-8987101 Msa0313550:CDS
AGAGACTTACAAAGCCGAGC+AGG 0.533133 2_4:-8986390 Msa0313550:CDS
GGTTCGGGAAATCCTGAAGA+AGG 0.534941 2_4:-8986542 Msa0313550:CDS
TTGGAGGTGTAATGATTATG+GGG 0.535125 2_4:-8987003 Msa0313550:CDS
ATTAGGAGCTACAGAAGATA+GGG 0.539881 2_4:-8986786 Msa0313550:CDS
CAATATCCTCTACAGTCACT+TGG 0.541710 2_4:+8986192 None:intergenic
TGTGCAGAGTTGAATGTGGA+TGG 0.543317 2_4:-8986278 Msa0313550:CDS
CTATTAGCTAAAGCTAATAG+AGG 0.543722 2_4:-8986701 Msa0313550:CDS
CTATCTTCTTATCCGGATGG+TGG 0.546147 2_4:-8988277 Msa0313550:five_prime_UTR
ATGGTTATGTGTTGTAGTAA+GGG 0.551998 2_4:-8985860 Msa0313550:three_prime_UTR
TGGATTCTGCTGCATCAGGT+TGG 0.555239 2_4:-8986622 Msa0313550:CDS
CCAAATTGATCAAGATCTCA+AGG 0.555254 2_4:-8986318 Msa0313550:CDS
TTAGCTTTAGCTAATAGTCC+AGG 0.555649 2_4:+8986707 None:intergenic
AATAAATATAGTATAAGAGA+AGG 0.557426 2_4:+8985894 None:intergenic
CATAAAATCCGCCATAGGAA+AGG 0.562276 2_4:+8985987 None:intergenic
CACACTCTCTCTCTAACCTC+AGG 0.564110 2_4:-8988072 Msa0313550:intron
GCAGTATAATATGAATAAAG+GGG 0.566931 2_4:+8988327 None:intergenic
TATCTTCTTATCCGGATGGT+GGG 0.568293 2_4:-8988276 Msa0313550:five_prime_UTR
TTGGAACACAGTGGAGAGAG+AGG 0.569168 2_4:-8986603 Msa0313550:CDS
CCAGAAGATCCAGAAGTCAT+GGG 0.571144 2_4:-8986887 Msa0313550:CDS
GGAGAAGAAAGGTAACGTGA+AGG 0.574357 2_4:+8988111 None:intergenic
CCAATTAAGATAAACCGAGC+AGG 0.575699 2_4:+8986563 None:intergenic
AAGGGTTGGAAGGAGAAGAA+AGG 0.575980 2_4:+8988100 None:intergenic
CCGTCTTAGAAAGGATCCAT+TGG 0.583615 2_4:-8986141 Msa0313550:CDS
GTCCTACTATCGCAGCAAAA+GGG 0.584833 2_4:+8987074 None:intergenic
GTTCGGGAAATCCTGAAGAA+GGG 0.590838 2_4:-8986541 Msa0313550:CDS
TATCTATCTTCTTATCCGGA+TGG 0.591591 2_4:-8988280 Msa0313550:five_prime_UTR
TCTCAAGGTGAAAATCTCTA+GGG 0.593212 2_4:-8986303 Msa0313550:CDS
GGTTATGTGTTGTAGTAAGG+GGG 0.593356 2_4:-8985858 Msa0313550:three_prime_UTR
CCAAATCTATCTAATAGTTG+TGG 0.593953 2_4:+8986509 None:intergenic
TTCTACAGAGTTAACTTCAG+TGG 0.594027 2_4:+8987866 None:intergenic
CTTCTTATCCGGATGGTGGG+AGG 0.594771 2_4:-8988273 Msa0313550:five_prime_UTR
ATACAACAGTTTGTCTGCTG+TGG 0.596276 2_4:-8986047 Msa0313550:three_prime_UTR
GTGATTGATCCAAAGATTGG+AGG 0.596512 2_4:-8987019 Msa0313550:CDS
ACTATGTCTTCAACAACACT+AGG 0.601368 2_4:-8988156 Msa0313550:CDS
AAGACCATAAAATCCGCCAT+AGG 0.602662 2_4:+8985982 None:intergenic
CCAATGGATCCTTTCTAAGA+CGG 0.606040 2_4:+8986141 None:intergenic
GTAGCACAAAGGGAAAGTCT+AGG 0.606575 2_4:-8987908 Msa0313550:CDS
AAGAGACCAAGTGACTGTAG+AGG 0.612252 2_4:-8986198 Msa0313550:CDS
TTCGGGAAATCCTGAAGAAG+GGG 0.616573 2_4:-8986540 Msa0313550:CDS
TTTGGAATGCATGCTCAAGT+CGG 0.624410 2_4:-8986491 Msa0313550:CDS
TTGAATGTGGATGGATTGAG+AGG 0.624939 2_4:-8986269 Msa0313550:CDS
CAGATCAAATTACCTCGGCA+AGG 0.628152 2_4:-8986358 Msa0313550:CDS
CGAAAGTATCTTCCTTGCCG+AGG 0.629459 2_4:+8986346 None:intergenic
AATTGGAATTAGTAGCACAA+AGG 0.629598 2_4:-8987919 Msa0313550:CDS
ACGTGAAGGAAGAAATGCAA+TGG 0.631404 2_4:+8988125 None:intergenic
TGTAGTAGAAAGCTTTATGG+AGG 0.634921 2_4:-8987942 Msa0313550:CDS
TGGAGGTGTAATGATTATGG+GGG 0.635560 2_4:-8987002 Msa0313550:CDS
CAGTATAATATGAATAAAGG+GGG 0.636966 2_4:+8988328 None:intergenic
GCTACAGAAGATAGGGTGTG+TGG 0.637186 2_4:-8986779 Msa0313550:CDS
TAGGTTTGACAAGAATCCAA+AGG 0.644338 2_4:-8986420 Msa0313550:CDS
AGGAACAGGGAAATCAACTA+CGG 0.645219 2_4:-8986975 Msa0313550:CDS
TGGAACACAGTGGAGAGAGA+GGG 0.656944 2_4:-8986602 Msa0313550:CDS
GAGAGATCGAGTTATAAAAG+GGG 0.661074 2_4:-8986855 Msa0313550:CDS
GCTGAGAGTGAAGATTGTAG+AGG 0.661411 2_4:-8986450 Msa0313550:CDS
GCTCACAGATCAAATTACCT+CGG 0.673145 2_4:-8986363 Msa0313550:CDS
ATCGCAGCAAAAGGGTACAC+CGG 0.682408 2_4:+8987082 None:intergenic
GGTGTGTGCAGAGTTGAATG+TGG 0.691143 2_4:-8986282 Msa0313550:CDS
CAGTGGCAACATTAACAACA+GGG 0.692478 2_4:+8987883 None:intergenic
TGTGTTGAGCAAAATCAACA+TGG 0.720795 2_4:-8986819 Msa0313550:CDS
CTATTTCTAAAGAAAGCCAG+AGG 0.724955 2_4:-8987105 Msa0313550:CDS
TGCATCAGGTTGGAACACAG+TGG 0.734702 2_4:-8986612 Msa0313550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCTATTTTAGCAAATTA+TGG - chr2_4:8986315-8986334 Msa0313550:CDS 15.0%
!! AATAAATATAGTATAAGAGA+AGG + chr2_4:8988243-8988262 None:intergenic 15.0%
!! AGCAGTATAATATGAATAAA+GGG + chr2_4:8985811-8985830 None:intergenic 20.0%
!! TAGCAGTATAATATGAATAA+AGG + chr2_4:8985812-8985831 None:intergenic 20.0%
!!! TTAAAAAAGTGCAATGTATA+AGG + chr2_4:8986385-8986404 None:intergenic 20.0%
!! TAAACTTATATAAGTCTGTT+TGG - chr2_4:8986402-8986421 Msa0313550:CDS 20.0%
!! TTCATAAATTTCTTGTATAC+AGG - chr2_4:8988190-8988209 Msa0313550:five_prime_UTR 20.0%
!! TATTTATTTATAGCCTGATA+TGG - chr2_4:8988255-8988274 Msa0313550:five_prime_UTR 20.0%
! CAGTATAATATGAATAAAGG+GGG + chr2_4:8985809-8985828 None:intergenic 25.0%
! GCAGTATAATATGAATAAAG+GGG + chr2_4:8985810-8985829 None:intergenic 25.0%
! AATCTATCTATCTTCTTATC+CGG - chr2_4:8985850-8985869 Msa0313550:three_prime_UTR 25.0%
!! ACTCAAGTTTATGTGTTTTA+TGG + chr2_4:8985909-8985928 None:intergenic 25.0%
!! AATTGCAGATAGAATTTTCT+AGG - chr2_4:8986716-8986735 Msa0313550:CDS 25.0%
! CTTGTAAGTTGTAACATTAT+AGG + chr2_4:8986858-8986877 None:intergenic 25.0%
! ACTTACAAGCTAATTCAAAT+TGG - chr2_4:8986869-8986888 Msa0313550:CDS 25.0%
! TGCATGAAATTAGTATACTT+TGG + chr2_4:8986896-8986915 None:intergenic 25.0%
! ACTAATTTCATGCATTTGTT+AGG - chr2_4:8986902-8986921 Msa0313550:CDS 25.0%
! TTCTTAGAAGTAAAGGATTA+GGG - chr2_4:8986925-8986944 Msa0313550:CDS 25.0%
!!! TGTTGATGAAGTTAATCTTT+TGG - chr2_4:8987465-8987484 Msa0313550:intron 25.0%
! TTAGAATTTAACCTTTCCTA+TGG - chr2_4:8988136-8988155 Msa0313550:CDS 25.0%
!!! GACTGTTTTAAGTAAATACA+TGG + chr2_4:8988221-8988240 None:intergenic 25.0%
! TTTATGTGTTTTATGGCAGA+TGG + chr2_4:8985902-8985921 None:intergenic 30.0%
CAATATATACAACATACCTG+AGG + chr2_4:8986081-8986100 None:intergenic 30.0%
!! TTCCTTTGCTTTTCTTGTTT+TGG - chr2_4:8986126-8986145 Msa0313550:CDS 30.0%
TTTGGACATTATGTGATTGT+TGG - chr2_4:8986144-8986163 Msa0313550:CDS 30.0%
TTGGAATATACATTGATGCA+GGG - chr2_4:8986163-8986182 Msa0313550:CDS 30.0%
AACTGTAGTAGAAAGCTTTA+TGG - chr2_4:8986189-8986208 Msa0313550:CDS 30.0%
AATTGGAATTAGTAGCACAA+AGG - chr2_4:8986215-8986234 Msa0313550:CDS 30.0%
ATTGGAATTAGTAGCACAAA+GGG - chr2_4:8986216-8986235 Msa0313550:CDS 30.0%
AGTATTTGGACACTATTGTT+TGG + chr2_4:8986688-8986707 None:intergenic 30.0%
GCAATTGCATATCAAGTATT+TGG + chr2_4:8986702-8986721 None:intergenic 30.0%
TGCAAACAAGTTAAATGAGA+AGG + chr2_4:8986762-8986781 None:intergenic 30.0%
TGTTAGGTTCTTAGAAGTAA+AGG - chr2_4:8986918-8986937 Msa0313550:CDS 30.0%
GTTCTTAGAAGTAAAGGATT+AGG - chr2_4:8986924-8986943 Msa0313550:CDS 30.0%
ATATCAAAAGTTCACAGAGT+TGG + chr2_4:8986995-8987014 None:intergenic 30.0%
TAGAAATAGTATTCAGACTC+TGG + chr2_4:8987018-8987037 None:intergenic 30.0%
! ATTGGAGGTGTAATGATTAT+GGG - chr2_4:8987130-8987149 Msa0313550:intron 30.0%
CGATTTACTTCCTGAAATTA+AGG - chr2_4:8987195-8987214 Msa0313550:intron 30.0%
CCAAAAACAACCTTAATTTC+AGG + chr2_4:8987208-8987227 None:intergenic 30.0%
!! CCTGAAATTAAGGTTGTTTT+TGG - chr2_4:8987205-8987224 Msa0313550:intron 30.0%
TGAGAGATCGAGTTATAAAA+GGG - chr2_4:8987278-8987297 Msa0313550:intron 30.0%
CTATTAGCTAAAGCTAATAG+AGG - chr2_4:8987433-8987452 Msa0313550:intron 30.0%
! TAATCTTTTGGATGATCACT+TGG - chr2_4:8987477-8987496 Msa0313550:intron 30.0%
TCGGTTTATCTTAATTGGTT+CGG - chr2_4:8987576-8987595 Msa0313550:intron 30.0%
CCAAATCTATCTAATAGTTG+TGG + chr2_4:8987628-8987647 None:intergenic 30.0%
CCACAACTATTAGATAGATT+TGG - chr2_4:8987625-8987644 Msa0313550:intron 30.0%
TATGGTTATGTGTTGTAGTA+AGG - chr2_4:8988273-8988292 Msa0313550:five_prime_UTR 30.0%
ATGGTTATGTGTTGTAGTAA+GGG - chr2_4:8988274-8988293 Msa0313550:five_prime_UTR 30.0%
TATCTATCTTCTTATCCGGA+TGG - chr2_4:8985854-8985873 Msa0313550:three_prime_UTR 35.0%
GTTGTTGAAGACATAGTTGA+AGG + chr2_4:8985975-8985994 None:intergenic 35.0%
ACTATGTCTTCAACAACACT+AGG - chr2_4:8985978-8985997 Msa0313550:three_prime_UTR 35.0%
GTCCAAAACAAGAAAAGCAA+AGG + chr2_4:8986131-8986150 None:intergenic 35.0%
GTTGGAATATACATTGATGC+AGG - chr2_4:8986162-8986181 Msa0313550:CDS 35.0%
! TGTAGTAGAAAGCTTTATGG+AGG - chr2_4:8986192-8986211 Msa0313550:CDS 35.0%
! AGAAAGCTTTATGGAGGAAT+TGG - chr2_4:8986198-8986217 Msa0313550:CDS 35.0%
TTCTACAGAGTTAACTTCAG+TGG + chr2_4:8986271-8986290 None:intergenic 35.0%
TGAAGTTAACTCTGTAGAAC+AGG - chr2_4:8986272-8986291 Msa0313550:CDS 35.0%
!! CTATTTCTAAAGAAAGCCAG+AGG - chr2_4:8987029-8987048 Msa0313550:CDS 35.0%
TCTTTGGATCAATCACGTTA+AGG + chr2_4:8987111-8987130 None:intergenic 35.0%
AACGTGATTGATCCAAAGAT+TGG - chr2_4:8987112-8987131 Msa0313550:CDS 35.0%
ATCATTACACCTCCAATCTT+TGG + chr2_4:8987127-8987146 None:intergenic 35.0%
! GATTGGAGGTGTAATGATTA+TGG - chr2_4:8987129-8987148 Msa0313550:intron 35.0%
! TTGGAGGTGTAATGATTATG+GGG - chr2_4:8987131-8987150 Msa0313550:intron 35.0%
GTGAGAGATCGAGTTATAAA+AGG - chr2_4:8987277-8987296 Msa0313550:intron 35.0%
GAGAGATCGAGTTATAAAAG+GGG - chr2_4:8987279-8987298 Msa0313550:intron 35.0%
!! GTTGATTTTGCTCAACACAA+TGG + chr2_4:8987314-8987333 None:intergenic 35.0%
TGTGTTGAGCAAAATCAACA+TGG - chr2_4:8987315-8987334 Msa0313550:intron 35.0%
!! AACATGGTTGATTTGCCATT+AGG - chr2_4:8987331-8987350 Msa0313550:intron 35.0%
ATTAGGAGCTACAGAAGATA+GGG - chr2_4:8987348-8987367 Msa0313550:intron 35.0%
ATTGAAAAAGCTCTCACTGA+GGG - chr2_4:8987388-8987407 Msa0313550:intron 35.0%
!! TTAGCTTTAGCTAATAGTCC+AGG + chr2_4:8987430-8987449 None:intergenic 35.0%
! CGGTTTATCTTAATTGGTTC+GGG - chr2_4:8987577-8987596 Msa0313550:intron 35.0%
TAGGTTTGACAAGAATCCAA+AGG - chr2_4:8987714-8987733 Msa0313550:intron 35.0%
TAAGTCTCTCGAAATTCCTT+TGG + chr2_4:8987733-8987752 None:intergenic 35.0%
CCTTGAGATCTTGATCAATT+TGG + chr2_4:8987819-8987838 None:intergenic 35.0%
CCAAATTGATCAAGATCTCA+AGG - chr2_4:8987816-8987835 Msa0313550:intron 35.0%
ATCTCAAGGTGAAAATCTCT+AGG - chr2_4:8987830-8987849 Msa0313550:intron 35.0%
TCTCAAGGTGAAAATCTCTA+GGG - chr2_4:8987831-8987850 Msa0313550:intron 35.0%
GAATTTAACCTTTCCTATGG+CGG - chr2_4:8988139-8988158 Msa0313550:CDS 35.0%
CTACAACACATAACCATATC+AGG + chr2_4:8988271-8988290 None:intergenic 35.0%
TGGTTATGTGTTGTAGTAAG+GGG - chr2_4:8988275-8988294 Msa0313550:five_prime_UTR 35.0%
CTGCTAAAAAGAGAGAGAGA+AGG - chr2_4:8985826-8985845 Msa0313550:three_prime_UTR 40.0%
TATCTTCTTATCCGGATGGT+GGG - chr2_4:8985858-8985877 Msa0313550:three_prime_UTR 40.0%
ACGTGAAGGAAGAAATGCAA+TGG + chr2_4:8986012-8986031 None:intergenic 40.0%
CAGTGGCAACATTAACAACA+GGG + chr2_4:8986254-8986273 None:intergenic 40.0%
TCAGTGGCAACATTAACAAC+AGG + chr2_4:8986255-8986274 None:intergenic 40.0%
GAAGTAAAGGATTAGGGTCT+TGG - chr2_4:8986931-8986950 Msa0313550:CDS 40.0%
GTGATTGATCCAAAGATTGG+AGG - chr2_4:8987115-8987134 Msa0313550:CDS 40.0%
! TGGAGGTGTAATGATTATGG+GGG - chr2_4:8987132-8987151 Msa0313550:intron 40.0%
GTAATGATTATGGGGGATAG+AGG - chr2_4:8987139-8987158 Msa0313550:intron 40.0%
AGGAACAGGGAAATCAACTA+CGG - chr2_4:8987159-8987178 Msa0313550:intron 40.0%
ATCAACTACGGTTAGGTCAT+TGG - chr2_4:8987171-8987190 Msa0313550:intron 40.0%
TCTTCTGGGTCTGAGTTATA+TGG + chr2_4:8987235-8987254 None:intergenic 40.0%
CTATCTTCTGTAGCTCCTAA+TGG + chr2_4:8987349-8987368 None:intergenic 40.0%
CATTAGGAGCTACAGAAGAT+AGG - chr2_4:8987347-8987366 Msa0313550:intron 40.0%
CATTGAAAAAGCTCTCACTG+AGG - chr2_4:8987387-8987406 Msa0313550:intron 40.0%
! TCACTTGGTTGATGTGTTGT+TGG - chr2_4:8987492-8987511 Msa0313550:intron 40.0%
CCAATTAAGATAAACCGAGC+AGG + chr2_4:8987574-8987593 None:intergenic 40.0%
CCTGCTCGGTTTATCTTAAT+TGG - chr2_4:8987571-8987590 Msa0313550:intron 40.0%
! TTTGGAATGCATGCTCAAGT+CGG - chr2_4:8987643-8987662 Msa0313550:intron 40.0%
GCTCACAGATCAAATTACCT+CGG - chr2_4:8987771-8987790 Msa0313550:intron 40.0%
!! TTGAATGTGGATGGATTGAG+AGG - chr2_4:8987865-8987884 Msa0313550:CDS 40.0%
AAACAGAGCTGCTAAAGCTT+TGG - chr2_4:8987900-8987919 Msa0313550:CDS 40.0%
! TAAAGCTTTGGCTGCTCTTA+AGG - chr2_4:8987912-8987931 Msa0313550:CDS 40.0%
! AAAGCTTTGGCTGCTCTTAA+GGG - chr2_4:8987913-8987932 Msa0313550:CDS 40.0%
CAATATCCTCTACAGTCACT+TGG + chr2_4:8987945-8987964 None:intergenic 40.0%
! CCAATGGATCCTTTCTAAGA+CGG + chr2_4:8987996-8988015 None:intergenic 40.0%
!! CCTGAATCTATTGACTCCAA+TGG + chr2_4:8988012-8988031 None:intergenic 40.0%
CCATTGGAGTCAATAGATTC+AGG - chr2_4:8988009-8988028 Msa0313550:intron 40.0%
ATACAACAGTTTGTCTGCTG+TGG - chr2_4:8988087-8988106 Msa0313550:CDS 40.0%
CATAAAATCCGCCATAGGAA+AGG + chr2_4:8988150-8988169 None:intergenic 40.0%
!!! CTTTCCTATGGCGGATTTTA+TGG - chr2_4:8988148-8988167 Msa0313550:CDS 40.0%
AAGACCATAAAATCCGCCAT+AGG + chr2_4:8988155-8988174 None:intergenic 40.0%
GGTTATGTGTTGTAGTAAGG+GGG - chr2_4:8988276-8988295 Msa0313550:five_prime_UTR 40.0%
CTATCTTCTTATCCGGATGG+TGG - chr2_4:8985857-8985876 Msa0313550:three_prime_UTR 45.0%
GGAGAAGAAAGGTAACGTGA+AGG + chr2_4:8986026-8986045 None:intergenic 45.0%
AAGGGTTGGAAGGAGAAGAA+AGG + chr2_4:8986037-8986056 None:intergenic 45.0%
! GAGAGAGAGTGTGAATGGAA+GGG + chr2_4:8986055-8986074 None:intergenic 45.0%
! AGAGAGAGAGTGTGAATGGA+AGG + chr2_4:8986056-8986075 None:intergenic 45.0%
! GGTTAGAGAGAGAGTGTGAA+TGG + chr2_4:8986060-8986079 None:intergenic 45.0%
GTAGCACAAAGGGAAAGTCT+AGG - chr2_4:8986226-8986245 Msa0313550:CDS 45.0%
GCATCAGTGTTTATGTCAGC+AGG + chr2_4:8986447-8986466 None:intergenic 45.0%
TAAACACTGATGCGACCGTT+TGG - chr2_4:8986454-8986473 Msa0313550:CDS 45.0%
AAACACTGATGCGACCGTTT+GGG - chr2_4:8986455-8986474 Msa0313550:CDS 45.0%
TTTCCATAAGCTCCCCCAAA+CGG + chr2_4:8986472-8986491 None:intergenic 45.0%
! TTCTAAAGAAAGCCAGAGGC+CGG - chr2_4:8987033-8987052 Msa0313550:CDS 45.0%
! TACCCTTTTGCTGCGATAGT+AGG - chr2_4:8987058-8987077 Msa0313550:CDS 45.0%
GTCCTACTATCGCAGCAAAA+GGG + chr2_4:8987063-8987082 None:intergenic 45.0%
TGTCCTACTATCGCAGCAAA+AGG + chr2_4:8987064-8987083 None:intergenic 45.0%
! TTTTGCTGCGATAGTAGGAC+AGG - chr2_4:8987063-8987082 Msa0313550:CDS 45.0%
ATTATGGGGGATAGAGGAAC+AGG - chr2_4:8987145-8987164 Msa0313550:intron 45.0%
TTATGGGGGATAGAGGAACA+GGG - chr2_4:8987146-8987165 Msa0313550:intron 45.0%
CAGGGAAATCAACTACGGTT+AGG - chr2_4:8987164-8987183 Msa0313550:intron 45.0%
CCATGACTTCTGGATCTTCT+GGG + chr2_4:8987249-8987268 None:intergenic 45.0%
CCAGAAGATCCAGAAGTCAT+GGG - chr2_4:8987247-8987266 Msa0313550:intron 45.0%
TTGTTGGATTCTGCTGCATC+AGG - chr2_4:8987508-8987527 Msa0313550:intron 45.0%
TTTCTATCTCGCATCCTGCT+CGG - chr2_4:8987557-8987576 Msa0313550:intron 45.0%
GTTCGGGAAATCCTGAAGAA+GGG - chr2_4:8987593-8987612 Msa0313550:intron 45.0%
TTCGGGAAATCCTGAAGAAG+GGG - chr2_4:8987594-8987613 Msa0313550:intron 45.0%
TTGGAATGCATGCTCAAGTC+GGG - chr2_4:8987644-8987663 Msa0313550:intron 45.0%
GCTGAGAGTGAAGATTGTAG+AGG - chr2_4:8987684-8987703 Msa0313550:intron 45.0%
AGATTGTAGAGGAGAGAGCT+AGG - chr2_4:8987695-8987714 Msa0313550:intron 45.0%
CAGATCAAATTACCTCGGCA+AGG - chr2_4:8987776-8987795 Msa0313550:intron 45.0%
TGTGCAGAGTTGAATGTGGA+TGG - chr2_4:8987856-8987875 Msa0313550:intron 45.0%
AAGAGACCAAGTGACTGTAG+AGG - chr2_4:8987936-8987955 Msa0313550:CDS 45.0%
CTTGAGACACCGTCTTAGAA+AGG - chr2_4:8987984-8988003 Msa0313550:intron 45.0%
CCGTCTTAGAAAGGATCCAT+TGG - chr2_4:8987993-8988012 Msa0313550:intron 45.0%
GCAGATGGCATGCTTCCTAT+TGG + chr2_4:8985887-8985906 None:intergenic 50.0%
GTGTGAATGGAAGGGTTGGA+AGG + chr2_4:8986047-8986066 None:intergenic 50.0%
! GAGAGTGTGAATGGAAGGGT+TGG + chr2_4:8986051-8986070 None:intergenic 50.0%
CACACTCTCTCTCTAACCTC+AGG - chr2_4:8986062-8986081 Msa0313550:three_prime_UTR 50.0%
AACACTGATGCGACCGTTTG+GGG - chr2_4:8986456-8986475 Msa0313550:CDS 50.0%
! ATCGCAGCAAAAGGGTACAC+CGG + chr2_4:8987055-8987074 None:intergenic 50.0%
CCCAGAAGATCCAGAAGTCA+TGG - chr2_4:8987246-8987265 Msa0313550:intron 50.0%
CCCATGACTTCTGGATCTTC+TGG + chr2_4:8987250-8987269 None:intergenic 50.0%
ACTTCGACTCCCATGACTTC+TGG + chr2_4:8987259-8987278 None:intergenic 50.0%
GCTACAGAAGATAGGGTGTG+TGG - chr2_4:8987355-8987374 Msa0313550:intron 50.0%
TGGATTCTGCTGCATCAGGT+TGG - chr2_4:8987512-8987531 Msa0313550:intron 50.0%
!! TGCATCAGGTTGGAACACAG+TGG - chr2_4:8987522-8987541 Msa0313550:intron 50.0%
TTGGAACACAGTGGAGAGAG+AGG - chr2_4:8987531-8987550 Msa0313550:intron 50.0%
TGGAACACAGTGGAGAGAGA+GGG - chr2_4:8987532-8987551 Msa0313550:intron 50.0%
GGTTCGGGAAATCCTGAAGA+AGG - chr2_4:8987592-8987611 Msa0313550:intron 50.0%
ATGCTCAAGTCGGGACTGTT+AGG - chr2_4:8987653-8987672 Msa0313550:intron 50.0%
TGCTCAAGTCGGGACTGTTA+GGG - chr2_4:8987654-8987673 Msa0313550:intron 50.0%
AGAGACTTACAAAGCCGAGC+AGG - chr2_4:8987744-8987763 Msa0313550:intron 50.0%
ATCTGTGAGCTTCTCCTGCT+CGG + chr2_4:8987761-8987780 None:intergenic 50.0%
!! CGAAAGTATCTTCCTTGCCG+AGG + chr2_4:8987791-8987810 None:intergenic 50.0%
GGTGTGTGCAGAGTTGAATG+TGG - chr2_4:8987852-8987871 Msa0313550:intron 50.0%
GACGGTGTCTCAAGCAGTTA+GGG + chr2_4:8987978-8987997 None:intergenic 50.0%
AGACGGTGTCTCAAGCAGTT+AGG + chr2_4:8987979-8987998 None:intergenic 50.0%
!! CTTCTTATCCGGATGGTGGG+AGG - chr2_4:8985861-8985880 Msa0313550:three_prime_UTR 55.0%
ACACTGATGCGACCGTTTGG+GGG - chr2_4:8986457-8986476 Msa0313550:CDS 55.0%
!! AGCTCTCACTGAGGGTGTCA+AGG - chr2_4:8987396-8987415 Msa0313550:intron 55.0%
! GGTGTCAAGGCATTTGAGCC+TGG - chr2_4:8987409-8987428 Msa0313550:intron 55.0%
ATCCTGAAGAAGGGGAGCTC+AGG - chr2_4:8987602-8987621 Msa0313550:intron 55.0%
! CCTATTGGCCTCCCACCATC+CGG + chr2_4:8985872-8985891 None:intergenic 60.0%
CGACCGTTTGGGGGAGCTTA+TGG - chr2_4:8986466-8986485 Msa0313550:CDS 60.0%
! CAAAAGGGTACACCGGCCTC+TGG + chr2_4:8987048-8987067 None:intergenic 60.0%
!! CCGGATGGTGGGAGGCCAAT+AGG - chr2_4:8985869-8985888 Msa0313550:three_prime_UTR 65.0%
GGCCTGAGCTCCCCTTCTTC+AGG + chr2_4:8987607-8987626 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 8985798 8988358 8985798 ID=Msa0313550;Name=Msa0313550
chr2_4 mRNA 8985798 8988358 8985798 ID=Msa0313550-mRNA-1;Parent=Msa0313550;Name=Msa0313550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=183|1|1|1|1|1|3|287|421
chr2_4 exon 8985798 8987137 8985798 ID=Msa0313550-mRNA-1:exon:3424;Parent=Msa0313550-mRNA-1
chr2_4 exon 8987863 8987972 8987863 ID=Msa0313550-mRNA-1:exon:3423;Parent=Msa0313550-mRNA-1
chr2_4 exon 8988073 8988358 8988073 ID=Msa0313550-mRNA-1:exon:3422;Parent=Msa0313550-mRNA-1
chr2_4 five_prime_UTR 8988176 8988358 8988176 ID=Msa0313550-mRNA-1:five_prime_utr;Parent=Msa0313550-mRNA-1
chr2_4 CDS 8988073 8988175 8988073 ID=Msa0313550-mRNA-1:cds;Parent=Msa0313550-mRNA-1
chr2_4 CDS 8987863 8987972 8987863 ID=Msa0313550-mRNA-1:cds;Parent=Msa0313550-mRNA-1
chr2_4 CDS 8986085 8987137 8986085 ID=Msa0313550-mRNA-1:cds;Parent=Msa0313550-mRNA-1
chr2_4 three_prime_UTR 8985798 8986084 8985798 ID=Msa0313550-mRNA-1:three_prime_utr;Parent=Msa0313550-mRNA-1
Gene Sequence

>Msa0313550

ATGTCTTCAACAACACTAGGCACTTCTTCCATTGCATTTCTTCCTTCACGTTACCTTTCTTCTCCTTCCAACCCTTCCATTCACACTCTCTCTCTAACCTCAGGGCAAAACTGTAGTAGAAAGCTTTATGGAGGAATTGGAATTAGTAGCACAAAGGGAAAGTCTAGGTTCCCTGTTGTTAATGTTGCCACTGAAGTTAACTCTGTAGAACAGAGTCTGAATACTATTTCTAAAGAAAGCCAGAGGCCGGTGTACCCTTTTGCTGCGATAGTAGGACAGGATGAGATGAAACTTTGTCTTCTCCTTAACGTGATTGATCCAAAGATTGGAGGTGTAATGATTATGGGGGATAGAGGAACAGGGAAATCAACTACGGTTAGGTCATTGGTCGATTTACTTCCTGAAATTAAGGTTGTTTTTGGTGATCCATATAACTCAGACCCAGAAGATCCAGAAGTCATGGGAGTCGAAGTGAGAGATCGAGTTATAAAAGGGGAGCAACTTTCCATTGTGTTGAGCAAAATCAACATGGTTGATTTGCCATTAGGAGCTACAGAAGATAGGGTGTGTGGAACAATCGACATTGAAAAAGCTCTCACTGAGGGTGTCAAGGCATTTGAGCCTGGACTATTAGCTAAAGCTAATAGAGGAATCTTATATGTTGATGAAGTTAATCTTTTGGATGATCACTTGGTTGATGTGTTGTTGGATTCTGCTGCATCAGGTTGGAACACAGTGGAGAGAGAGGGTATTTCTATCTCGCATCCTGCTCGGTTTATCTTAATTGGTTCGGGAAATCCTGAAGAAGGGGAGCTCAGGCCACAACTATTAGATAGATTTGGAATGCATGCTCAAGTCGGGACTGTTAGGGATGCTGAGCTGAGAGTGAAGATTGTAGAGGAGAGAGCTAGGTTTGACAAGAATCCAAAGGAATTTCGAGAGACTTACAAAGCCGAGCAGGAGAAGCTCACAGATCAAATTACCTCGGCAAGGAAGATACTTTCGTCTGTCCAAATTGATCAAGATCTCAAGGTGAAAATCTCTAGGGTGTGTGCAGAGTTGAATGTGGATGGATTGAGAGGAGACATAGTATCAAACAGAGCTGCTAAAGCTTTGGCTGCTCTTAAGGGAAGAGACCAAGTGACTGTAGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGTCTTAGAAAGGATCCATTGGAGTCAATAGATTCAGGTTTACTTGTTACAGAGAAATTTTATGAAGTATTCAGCTGA

Protein sequence

>Msa0313550

MSSTTLGTSSIAFLPSRYLSSPSNPSIHTLSLTSGQNCSRKLYGGIGISSTKGKSRFPVVNVATEVNSVEQSLNTISKESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVFGDPYNSDPEDPEVMGVEVRDRVIKGEQLSIVLSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRETYKAEQEKLTDQITSARKILSSVQIDQDLKVKISRVCAELNVDGLRGDIVSNRAAKALAALKGRDQVTVEDIATVIPNCLRHRLRKDPLESIDSGLLVTEKFYEVFS*