Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524970 | XP_003603422.3 | 98.140 | 215 | 4 | 0 | 1 | 215 | 47 | 261 | 3.71e-149 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524970 | G7JB45 | 98.140 | 215 | 4 | 0 | 1 | 215 | 47 | 261 | 1.77e-149 | 425 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088550 | Msa0524970 | -0.803950 | 2.729793e-49 | -8.615850e-47 |
| Msa0094100 | Msa0524970 | -0.834071 | 3.704057e-56 | -8.615850e-47 |
| Msa0135360 | Msa0524970 | -0.800364 | 1.492342e-48 | -8.615850e-47 |
| Msa0153440 | Msa0524970 | -0.806987 | 6.299663e-50 | -8.615850e-47 |
| Msa0162050 | Msa0524970 | -0.800678 | 1.287411e-48 | -8.615850e-47 |
| Msa0162070 | Msa0524970 | -0.807016 | 6.209999e-50 | -8.615850e-47 |
| Msa0180300 | Msa0524970 | -0.804757 | 1.853288e-49 | -8.615850e-47 |
| Msa0185640 | Msa0524970 | 0.813837 | 2.090862e-51 | -8.615850e-47 |
| Msa0193760 | Msa0524970 | -0.804377 | 2.224103e-49 | -8.615850e-47 |
| Msa0223960 | Msa0524970 | -0.807460 | 5.000122e-50 | -8.615850e-47 |
| Msa0371420 | Msa0524970 | 0.838548 | 2.694237e-57 | -8.615850e-47 |
| Msa0411000 | Msa0524970 | -0.821302 | 4.339423e-53 | -8.615850e-47 |
| Msa0414070 | Msa0524970 | -0.824412 | 8.187827e-54 | -8.615850e-47 |
| Msa0419620 | Msa0524970 | 0.829621 | 4.647276e-55 | -8.615850e-47 |
| Msa0438630 | Msa0524970 | 0.805350 | 1.393016e-49 | -8.615850e-47 |
| Msa0440110 | Msa0524970 | -0.829617 | 4.656878e-55 | -8.615850e-47 |
| Msa0455230 | Msa0524970 | -0.820850 | 5.514667e-53 | -8.615850e-47 |
| Msa0457370 | Msa0524970 | -0.805825 | 1.107240e-49 | -8.615850e-47 |
| Msa0465680 | Msa0524970 | 0.844057 | 9.571068e-59 | -8.615850e-47 |
| Msa0265820 | Msa0524970 | -0.832244 | 1.055650e-55 | -8.615850e-47 |
| Msa0265980 | Msa0524970 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0280660 | Msa0524970 | 0.823378 | 1.430913e-53 | -8.615850e-47 |
| Msa0342340 | Msa0524970 | 0.819786 | 9.674914e-53 | -8.615850e-47 |
| Msa0363460 | Msa0524970 | -0.820067 | 8.340330e-53 | -8.615850e-47 |
| Msa0501470 | Msa0524970 | -0.812118 | 4.978667e-51 | -8.615850e-47 |
| Msa0511720 | Msa0524970 | 0.800221 | 1.595408e-48 | -8.615850e-47 |
| Msa0524820 | Msa0524970 | 0.924731 | 4.758367e-90 | -8.615850e-47 |
| Msa0524890 | Msa0524970 | 0.861923 | 7.291115e-64 | -8.615850e-47 |
| Msa0524970 | Msa0530930 | -0.802109 | 6.555578e-49 | -8.615850e-47 |
| Msa0524970 | Msa0563140 | -0.805100 | 1.571368e-49 | -8.615850e-47 |
| Msa0524970 | Msa0576990 | 0.804929 | 1.706062e-49 | -8.615850e-47 |
| Msa0524970 | Msa0577230 | -0.819602 | 1.065713e-52 | -8.615850e-47 |
| Msa0524970 | Msa0583930 | -0.828066 | 1.104911e-54 | -8.615850e-47 |
| Msa0524970 | Msa0583940 | -0.806919 | 6.511717e-50 | -8.615850e-47 |
| Msa0524970 | Msa0589610 | -0.808064 | 3.721165e-50 | -8.615850e-47 |
| Msa0524970 | Msa0617370 | -0.813694 | 2.248008e-51 | -8.615850e-47 |
| Msa0524970 | Msa0617560 | 0.817627 | 2.989772e-52 | -8.615850e-47 |
| Msa0524970 | Msa0621890 | -0.811610 | 6.424137e-51 | -8.615850e-47 |
| Msa0524970 | Msa0660880 | 0.820893 | 5.392748e-53 | -8.615850e-47 |
| Msa0524970 | Msa0688550 | -0.825492 | 4.551065e-54 | -8.615850e-47 |
| Msa0524970 | Msa0697140 | -0.807093 | 5.980269e-50 | -8.615850e-47 |
| Msa0524970 | Msa0697200 | -0.809706 | 1.657166e-50 | -8.615850e-47 |
| Msa0524970 | Msa0715720 | -0.820780 | 5.722904e-53 | -8.615850e-47 |
| Msa0524970 | Msa0716740 | 0.831616 | 1.509283e-55 | -8.615850e-47 |
| Msa0524970 | Msa0722930 | -0.830466 | 2.891167e-55 | -8.615850e-47 |
| Msa0524970 | Msa0723140 | -0.812704 | 3.708770e-51 | -8.615850e-47 |
| Msa0524970 | Msa0750380 | -0.831734 | 1.411187e-55 | -8.615850e-47 |
| Msa0524970 | Msa0752580 | -0.825233 | 5.240709e-54 | -8.615850e-47 |
| Msa0524970 | Msa0754500 | -0.819739 | 9.912705e-53 | -8.615850e-47 |
| Msa0524970 | Msa0794460 | -0.804466 | 2.131805e-49 | -8.615850e-47 |
| Msa0524970 | Msa0799290 | 0.828354 | 9.421433e-55 | -8.615850e-47 |
| Msa0524970 | Msa0830720 | -0.822542 | 2.241158e-53 | -8.615850e-47 |
| Msa0524970 | Msa0830900 | -0.818227 | 2.187763e-52 | -8.615850e-47 |
| Msa0524970 | Msa0837510 | 0.827835 | 1.256284e-54 | -8.615850e-47 |
| Msa0524970 | Msa0844900 | -0.810777 | 9.737572e-51 | -8.615850e-47 |
| Msa0524970 | Msa0847200 | -0.819467 | 1.144030e-52 | -8.615850e-47 |
| Msa0524970 | Msa0883660 | -0.836787 | 7.626432e-57 | -8.615850e-47 |
| Msa0524970 | Msa0883670 | -0.800621 | 1.322681e-48 | -8.615850e-47 |
| Msa0524970 | Msa0929400 | -0.801983 | 6.960653e-49 | -8.615850e-47 |
| Msa0524970 | Msa0951720 | -0.812870 | 3.410411e-51 | -8.615850e-47 |
| Msa0524970 | Msa0961420 | 0.871823 | 5.096283e-67 | -8.615850e-47 |
| Msa0524970 | Msa0964680 | -0.808890 | 2.479194e-50 | -8.615850e-47 |
| Msa0524970 | Msa0980440 | -0.805995 | 1.019776e-49 | -8.615850e-47 |
| Msa0524970 | Msa1008340 | -0.826366 | 2.822752e-54 | -8.615850e-47 |
| Msa0524970 | Msa1016110 | -0.812564 | 3.979338e-51 | -8.615850e-47 |
| Msa0524970 | Msa1049950 | -0.816546 | 5.229231e-52 | -8.615850e-47 |
| Msa0524970 | Msa1081700 | -0.806808 | 6.872227e-50 | -8.615850e-47 |
| Msa0524970 | Msa1085960 | 0.805330 | 1.406625e-49 | -8.615850e-47 |
| Msa0524970 | Msa1087530 | -0.805729 | 1.160065e-49 | -8.615850e-47 |
| Msa0524970 | Msa1130650 | -0.814919 | 1.205501e-51 | -8.615850e-47 |
| Msa0524970 | Msa1139240 | -0.808144 | 3.578391e-50 | -8.615850e-47 |
| Msa0524970 | Msa1161760 | -0.801845 | 7.430763e-49 | -8.615850e-47 |
| Msa0524970 | Msa1182830 | -0.801605 | 8.320167e-49 | -8.615850e-47 |
| Msa0524970 | Msa1204430 | -0.819273 | 1.266379e-52 | -8.615850e-47 |
| Msa0524970 | Msa1204980 | 0.805230 | 1.475770e-49 | -8.615850e-47 |
| Msa0524970 | Msa1205010 | 0.814001 | 1.924119e-51 | -8.615850e-47 |
| Msa0524970 | Msa1207480 | 0.812908 | 3.346106e-51 | -8.615850e-47 |
| Msa0524970 | Msa1221200 | 0.806574 | 7.700493e-50 | -8.615850e-47 |
| Msa0524970 | Msa1222030 | 0.800749 | 1.245494e-48 | -8.615850e-47 |
| Msa0524970 | Msa1256540 | 0.811191 | 7.920534e-51 | -8.615850e-47 |
| Msa0524970 | Msa1279870 | -0.813798 | 2.133108e-51 | -8.615850e-47 |
| Msa0524970 | Msa1296960 | 0.812430 | 4.255889e-51 | -8.615850e-47 |
| Msa0524970 | Msa1355950 | -0.806991 | 6.285919e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524970 | MtrunA17_Chr3g0137981 | 98.140 | 215 | 4 | 0 | 1 | 215 | 47 | 261 | 3.42e-153 | 425 |
| Msa0524970 | MtrunA17_Chr4g0003661 | 51.149 | 174 | 81 | 2 | 19 | 192 | 11 | 180 | 3.00e-51 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524970 | AT5G11280.1 | 72.195 | 205 | 54 | 2 | 13 | 215 | 6 | 209 | 2.94e-111 | 317 |
| Msa0524970 | AT1G80200.3 | 40.933 | 193 | 108 | 4 | 6 | 192 | 25 | 217 | 1.99e-41 | 140 |
| Msa0524970 | AT1G80200.2 | 40.933 | 193 | 108 | 4 | 6 | 192 | 27 | 219 | 2.61e-41 | 140 |
| Msa0524970 | AT1G80200.1 | 41.935 | 186 | 102 | 4 | 13 | 192 | 4 | 189 | 2.73e-41 | 139 |
Find 80 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAAGTTTAACAATTC+TGG | 0.201220 | 3_4:-78511946 | None:intergenic |
| TATCTGTTCCAAAAGGAATT+TGG | 0.208265 | 3_4:-78511901 | None:intergenic |
| TACCCTGGTGCTGCTTTAAA+TGG | 0.213795 | 3_4:+78510794 | Msa0524970:CDS |
| CCTTTCTTCCAAATTCCTTT+TGG | 0.252564 | 3_4:+78511893 | Msa0524970:three_prime_UTR |
| TTGGATCACTTCTTGTGATA+TGG | 0.253529 | 3_4:+78511633 | Msa0524970:CDS |
| TGTTCCTGTTGGCACACAAC+TGG | 0.311672 | 3_4:+78510422 | Msa0524970:five_prime_UTR |
| TTCGCAGGATCAGTATTTAC+TGG | 0.318077 | 3_4:-78511686 | None:intergenic |
| TGTAAAGTATGATATGAAAA+AGG | 0.337916 | 3_4:+78511763 | Msa0524970:CDS |
| CCCGGTAGAATGAGCATGTT+TGG | 0.342893 | 3_4:+78511614 | Msa0524970:CDS |
| AGTTGTGTGCCAACAGGAAC+AGG | 0.356731 | 3_4:-78510420 | None:intergenic |
| ATGATTTATCAGGTCCTTGC+AGG | 0.367749 | 3_4:+78511548 | Msa0524970:intron |
| TCCTAGTTGGGATAGTTTGT+TGG | 0.385762 | 3_4:+78510838 | Msa0524970:CDS |
| GACTTTGATGAGCTCTTAAG+AGG | 0.392333 | 3_4:-78511824 | None:intergenic |
| TTTCCTGTTCCACTTGTAAA+GGG | 0.393641 | 3_4:+78510764 | Msa0524970:CDS |
| CTGCCAGGGCGGCCCCTGTC+CGG | 0.403387 | 3_4:+78511789 | Msa0524970:CDS |
| TACAGGGTTACATGCAGATC+TGG | 0.408658 | 3_4:+78510686 | Msa0524970:intron |
| ATCATGGCAAACACCATTGT+TGG | 0.415601 | 3_4:-78511725 | None:intergenic |
| GGAAGCTACTTTGCAGTAGC+AGG | 0.416283 | 3_4:+78511569 | Msa0524970:CDS |
| TGGATCACTTCTTGTGATAT+GGG | 0.418628 | 3_4:+78511634 | Msa0524970:CDS |
| GCAGTAGCAGGAGCACTTGT+TGG | 0.425218 | 3_4:+78511581 | Msa0524970:CDS |
| ATTTCCTGTTCCACTTGTAA+AGG | 0.426556 | 3_4:+78510763 | Msa0524970:CDS |
| GTGATGATGTTACATGTAAA+GGG | 0.435849 | 3_4:-78510721 | None:intergenic |
| TGAGGAAATGTTCCATCCCT+TGG | 0.437177 | 3_4:-78510537 | None:intergenic |
| AGACCCTTTACAAGTGGAAC+AGG | 0.438573 | 3_4:-78510767 | None:intergenic |
| ATCTTCTTCTTCCTTCTCCA+TGG | 0.442248 | 3_4:+78510478 | Msa0524970:exon |
| CTTCCCAGTTGTGTGCCAAC+AGG | 0.443594 | 3_4:-78510426 | None:intergenic |
| CAACATGACTGTTCCTAGTT+GGG | 0.458590 | 3_4:+78510826 | Msa0524970:CDS |
| CCAAAAGGAATTTGGAAGAA+AGG | 0.460191 | 3_4:-78511893 | None:intergenic |
| TGCAGAAGCTTCCTTGATAG+TGG | 0.474544 | 3_4:-78510876 | None:intergenic |
| TAAAATAGAGAAAATAAGAT+GGG | 0.477086 | 3_4:+78510392 | None:intergenic |
| TCCAAACATGCTCATTCTAC+CGG | 0.484946 | 3_4:-78511615 | None:intergenic |
| TGTGATGATGTTACATGTAA+AGG | 0.485821 | 3_4:-78510722 | None:intergenic |
| GGACCGGACAGGGGCCGCCC+TGG | 0.487426 | 3_4:-78511792 | None:intergenic |
| ACAACATGACTGTTCCTAGT+TGG | 0.492866 | 3_4:+78510825 | Msa0524970:CDS |
| CTATGTCTATCTGTTCCAAA+AGG | 0.493372 | 3_4:-78511908 | None:intergenic |
| GTATAATTTGACCACTATCA+AGG | 0.493949 | 3_4:+78510865 | Msa0524970:CDS |
| CTTGGAAGATGATGATGAGT+AGG | 0.494468 | 3_4:-78510577 | None:intergenic |
| AACCGATCTTCAACGCTTGG+AGG | 0.495020 | 3_4:+78510901 | Msa0524970:CDS |
| GGTTTAGCAGTGGACCGGAC+AGG | 0.498097 | 3_4:-78511803 | None:intergenic |
| ATAAAATAGAGAAAATAAGA+TGG | 0.501316 | 3_4:+78510391 | None:intergenic |
| GTAGATGCGTGCTGCGATTG+AGG | 0.506076 | 3_4:-78510555 | None:intergenic |
| AGACAAGAAGGCACATATCA+TGG | 0.508797 | 3_4:-78511741 | None:intergenic |
| GTTTAGCAGTGGACCGGACA+GGG | 0.519587 | 3_4:-78511802 | None:intergenic |
| TCATGGCAAACACCATTGTT+GGG | 0.522116 | 3_4:-78511724 | None:intergenic |
| GGATCACTTCTTGTGATATG+GGG | 0.524575 | 3_4:+78511635 | Msa0524970:CDS |
| GAACAGTCATGTTGTGGATG+AGG | 0.528098 | 3_4:-78510817 | None:intergenic |
| AGTACCTGAAAAGAGGGACT+TGG | 0.536129 | 3_4:-78510595 | None:intergenic |
| CCAAACATGCTCATTCTACC+GGG | 0.539556 | 3_4:-78511614 | None:intergenic |
| TAAGAGGTTTAGCAGTGGAC+CGG | 0.544646 | 3_4:-78511808 | None:intergenic |
| ATCATACTTTACAGACAAGA+AGG | 0.545178 | 3_4:-78511753 | None:intergenic |
| GAAATCATCACCTTCATCCA+AGG | 0.545466 | 3_4:+78510520 | Msa0524970:CDS |
| ATGTTCCATCCCTTGGATGA+AGG | 0.546480 | 3_4:-78510530 | None:intergenic |
| GTTCCTGTTGGCACACAACT+GGG | 0.559343 | 3_4:+78510423 | Msa0524970:five_prime_UTR |
| GCACACAACTGGGAAGAAGT+TGG | 0.560545 | 3_4:+78510433 | Msa0524970:five_prime_UTR |
| AGTAACCGATCTTCAACGCT+TGG | 0.561137 | 3_4:+78510898 | Msa0524970:CDS |
| ACTTCTTGTGATATGGGGAC+TGG | 0.561214 | 3_4:+78511640 | Msa0524970:CDS |
| AGGCCATTTAAAGCAGCACC+AGG | 0.563544 | 3_4:-78510797 | None:intergenic |
| AACTAGGAACAGTCATGTTG+TGG | 0.564260 | 3_4:-78510823 | None:intergenic |
| AACTTGTGTTGCCATGGAGA+AGG | 0.565910 | 3_4:-78510489 | None:intergenic |
| ATATGGGGACTGGTCAAAGA+AGG | 0.566921 | 3_4:+78511650 | Msa0524970:CDS |
| AACCTCCAAGCGTTGAAGAT+CGG | 0.570379 | 3_4:-78510903 | None:intergenic |
| GTTTGGGAGTACCTGAAAAG+AGG | 0.572459 | 3_4:-78510602 | None:intergenic |
| AGATACAACTTGTGTTGCCA+TGG | 0.577324 | 3_4:-78510495 | None:intergenic |
| GATCAGATGCTTCTCGACGA+TGG | 0.582609 | 3_4:-78510458 | None:intergenic |
| TACAAAAGACCCTTTACAAG+TGG | 0.585226 | 3_4:-78510773 | None:intergenic |
| TAGACGTAGACAGCTTTCGC+AGG | 0.586449 | 3_4:-78511701 | None:intergenic |
| CATCACCTTCATCCAAGGGA+TGG | 0.592421 | 3_4:+78510525 | Msa0524970:CDS |
| CTTGTTGGTATTCTGAAACC+CGG | 0.595853 | 3_4:+78511596 | Msa0524970:CDS |
| TTTGGGAGTACCTGAAAAGA+GGG | 0.608777 | 3_4:-78510601 | None:intergenic |
| AAATCATCACCTTCATCCAA+GGG | 0.613603 | 3_4:+78510521 | Msa0524970:CDS |
| TGGGGACACCCTGTTCCTGT+TGG | 0.617066 | 3_4:+78510411 | Msa0524970:five_prime_UTR |
| TTTAGCAGTGGACCGGACAG+GGG | 0.629054 | 3_4:-78511801 | None:intergenic |
| TCCAACAAACTATCCCAACT+AGG | 0.646774 | 3_4:-78510839 | None:intergenic |
| AAAATAGAGAAAATAAGATG+GGG | 0.652672 | 3_4:+78510393 | None:intergenic |
| CTGCAAAGTAGCTTCCTGCA+AGG | 0.676389 | 3_4:-78511562 | None:intergenic |
| GTTGTGTGCCAACAGGAACA+GGG | 0.678585 | 3_4:-78510419 | None:intergenic |
| TGTCTACGTCTACCCAACAA+TGG | 0.684219 | 3_4:+78511712 | Msa0524970:CDS |
| GCTCTTAAGAGGTTTAGCAG+TGG | 0.687561 | 3_4:-78511813 | None:intergenic |
| GGCCATTTAAAGCAGCACCA+GGG | 0.713591 | 3_4:-78510796 | None:intergenic |
| TGATGATGTTACATGTAAAG+GGG | 0.715942 | 3_4:-78510720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATCATTTTGATTAC+AGG | + | chr3_4:78510669-78510688 | Msa0524970:intron | 15.0% |
| !!! | AATTTATCATTTTGATTACA+GGG | + | chr3_4:78510670-78510689 | Msa0524970:intron | 15.0% |
| !!! | ATATTTTTCAATGATTTATC+AGG | + | chr3_4:78511538-78511557 | Msa0524970:intron | 15.0% |
| !! | TCAATCAATTAATAGAAAAA+TGG | - | chr3_4:78511974-78511993 | None:intergenic | 15.0% |
| !!! | AAATTTATCATTTTGATTAC+AGG | + | chr3_4:78510669-78510688 | Msa0524970:intron | 15.0% |
| !!! | AATTTATCATTTTGATTACA+GGG | + | chr3_4:78510670-78510689 | Msa0524970:intron | 15.0% |
| !!! | ATATTTTTCAATGATTTATC+AGG | + | chr3_4:78511538-78511557 | Msa0524970:intron | 15.0% |
| !! | TCAATCAATTAATAGAAAAA+TGG | - | chr3_4:78511974-78511993 | None:intergenic | 15.0% |
| !! | AATATGTTAGAATAACTAGA+AGG | - | chr3_4:78510642-78510661 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTGTATTTAGAT+CGG | + | chr3_4:78510948-78510967 | Msa0524970:intron | 20.0% |
| !!! | TGTAACATTTTTTGTTGAAA+TGG | + | chr3_4:78511207-78511226 | Msa0524970:intron | 20.0% |
| !!! | TGCATAAGCAAATTTTTTTA+AGG | + | chr3_4:78511286-78511305 | Msa0524970:intron | 20.0% |
| !!! | TAAGCAAATTTTTTTAAGGA+AGG | + | chr3_4:78511290-78511309 | Msa0524970:intron | 20.0% |
| !! | TAAATCATTGAAAAATATCC+AGG | - | chr3_4:78511536-78511555 | None:intergenic | 20.0% |
| !! | TGTAAAGTATGATATGAAAA+AGG | + | chr3_4:78511763-78511782 | Msa0524970:CDS | 20.0% |
| !! | AAATGAAAGTTTAACAATTC+TGG | - | chr3_4:78511949-78511968 | None:intergenic | 20.0% |
| !! | AATATGTTAGAATAACTAGA+AGG | - | chr3_4:78510642-78510661 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTGTATTTAGAT+CGG | + | chr3_4:78510948-78510967 | Msa0524970:intron | 20.0% |
| !!! | TGTAACATTTTTTGTTGAAA+TGG | + | chr3_4:78511207-78511226 | Msa0524970:intron | 20.0% |
| !!! | TGCATAAGCAAATTTTTTTA+AGG | + | chr3_4:78511286-78511305 | Msa0524970:intron | 20.0% |
| !!! | TAAGCAAATTTTTTTAAGGA+AGG | + | chr3_4:78511290-78511309 | Msa0524970:intron | 20.0% |
| !! | TAAATCATTGAAAAATATCC+AGG | - | chr3_4:78511536-78511555 | None:intergenic | 20.0% |
| !! | TGTAAAGTATGATATGAAAA+AGG | + | chr3_4:78511763-78511782 | Msa0524970:CDS | 20.0% |
| !! | AAATGAAAGTTTAACAATTC+TGG | - | chr3_4:78511949-78511968 | None:intergenic | 20.0% |
| ! | GGAAGAAATAAAAAGAGTTT+GGG | - | chr3_4:78510621-78510640 | None:intergenic | 25.0% |
| ! | AGGAAGAAATAAAAAGAGTT+TGG | - | chr3_4:78510622-78510641 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGTTCAGACA+TGG | + | chr3_4:78511167-78511186 | Msa0524970:intron | 25.0% |
| ! | CAATAATCAATTGCTATGTA+GGG | - | chr3_4:78511250-78511269 | None:intergenic | 25.0% |
| ! | AAATAGCTGAAATATCCAAA+GGG | - | chr3_4:78511458-78511477 | None:intergenic | 25.0% |
| ! | AAAATAGCTGAAATATCCAA+AGG | - | chr3_4:78511459-78511478 | None:intergenic | 25.0% |
| ! | GGAAGAAATAAAAAGAGTTT+GGG | - | chr3_4:78510621-78510640 | None:intergenic | 25.0% |
| ! | AGGAAGAAATAAAAAGAGTT+TGG | - | chr3_4:78510622-78510641 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGTTCAGACA+TGG | + | chr3_4:78511167-78511186 | Msa0524970:intron | 25.0% |
| ! | CAATAATCAATTGCTATGTA+GGG | - | chr3_4:78511250-78511269 | None:intergenic | 25.0% |
| ! | AAATAGCTGAAATATCCAAA+GGG | - | chr3_4:78511458-78511477 | None:intergenic | 25.0% |
| ! | AAAATAGCTGAAATATCCAA+AGG | - | chr3_4:78511459-78511478 | None:intergenic | 25.0% |
| ! | TGATGATGTTACATGTAAAG+GGG | - | chr3_4:78510723-78510742 | None:intergenic | 30.0% |
| ! | GTGATGATGTTACATGTAAA+GGG | - | chr3_4:78510724-78510743 | None:intergenic | 30.0% |
| ! | TGTGATGATGTTACATGTAA+AGG | - | chr3_4:78510725-78510744 | None:intergenic | 30.0% |
| GTATAATTTGACCACTATCA+AGG | + | chr3_4:78510865-78510884 | Msa0524970:CDS | 30.0% | |
| AAATAACATGGCATGTCTAT+TGG | + | chr3_4:78511028-78511047 | Msa0524970:intron | 30.0% | |
| AAGCAATCATGAAGAACTTA+CGG | - | chr3_4:78511071-78511090 | None:intergenic | 30.0% | |
| CCAATAATCAATTGCTATGT+AGG | - | chr3_4:78511251-78511270 | None:intergenic | 30.0% | |
| CCTACATAGCAATTGATTAT+TGG | + | chr3_4:78511248-78511267 | Msa0524970:intron | 30.0% | |
| ! | AGAGTATTCTCATTACTATG+AGG | - | chr3_4:78511327-78511346 | None:intergenic | 30.0% |
| ! | GCATATTTTATGCGAGTTTT+AGG | - | chr3_4:78511376-78511395 | None:intergenic | 30.0% |
| CAAATAGACAAGAACAACTA+GGG | - | chr3_4:78511400-78511419 | None:intergenic | 30.0% | |
| ! | GTTCTTGTCTATTTGCATTT+TGG | + | chr3_4:78511405-78511424 | Msa0524970:intron | 30.0% |
| ATCATACTTTACAGACAAGA+AGG | - | chr3_4:78511756-78511775 | None:intergenic | 30.0% | |
| TATCTGTTCCAAAAGGAATT+TGG | - | chr3_4:78511904-78511923 | None:intergenic | 30.0% | |
| ! | TGATGATGTTACATGTAAAG+GGG | - | chr3_4:78510723-78510742 | None:intergenic | 30.0% |
| ! | GTGATGATGTTACATGTAAA+GGG | - | chr3_4:78510724-78510743 | None:intergenic | 30.0% |
| ! | TGTGATGATGTTACATGTAA+AGG | - | chr3_4:78510725-78510744 | None:intergenic | 30.0% |
| GTATAATTTGACCACTATCA+AGG | + | chr3_4:78510865-78510884 | Msa0524970:CDS | 30.0% | |
| AAATAACATGGCATGTCTAT+TGG | + | chr3_4:78511028-78511047 | Msa0524970:intron | 30.0% | |
| AAGCAATCATGAAGAACTTA+CGG | - | chr3_4:78511071-78511090 | None:intergenic | 30.0% | |
| CCAATAATCAATTGCTATGT+AGG | - | chr3_4:78511251-78511270 | None:intergenic | 30.0% | |
| CCTACATAGCAATTGATTAT+TGG | + | chr3_4:78511248-78511267 | Msa0524970:intron | 30.0% | |
| ! | AGAGTATTCTCATTACTATG+AGG | - | chr3_4:78511327-78511346 | None:intergenic | 30.0% |
| ! | GCATATTTTATGCGAGTTTT+AGG | - | chr3_4:78511376-78511395 | None:intergenic | 30.0% |
| CAAATAGACAAGAACAACTA+GGG | - | chr3_4:78511400-78511419 | None:intergenic | 30.0% | |
| ! | GTTCTTGTCTATTTGCATTT+TGG | + | chr3_4:78511405-78511424 | Msa0524970:intron | 30.0% |
| ATCATACTTTACAGACAAGA+AGG | - | chr3_4:78511756-78511775 | None:intergenic | 30.0% | |
| TATCTGTTCCAAAAGGAATT+TGG | - | chr3_4:78511904-78511923 | None:intergenic | 30.0% | |
| AAATCATCACCTTCATCCAA+GGG | + | chr3_4:78510521-78510540 | Msa0524970:CDS | 35.0% | |
| ATTTCCTGTTCCACTTGTAA+AGG | + | chr3_4:78510763-78510782 | Msa0524970:CDS | 35.0% | |
| TTTCCTGTTCCACTTGTAAA+GGG | + | chr3_4:78510764-78510783 | Msa0524970:CDS | 35.0% | |
| TACAAAAGACCCTTTACAAG+TGG | - | chr3_4:78510776-78510795 | None:intergenic | 35.0% | |
| GAGAGTTCATGGAAATAACA+TGG | + | chr3_4:78511016-78511035 | Msa0524970:intron | 35.0% | |
| GCAAATAGACAAGAACAACT+AGG | - | chr3_4:78511401-78511420 | None:intergenic | 35.0% | |
| !! | ACTTGTTATAAGGCAGATGA+AGG | - | chr3_4:78511435-78511454 | None:intergenic | 35.0% |
| !! | ATCCAAAGGGACTTGTTATA+AGG | - | chr3_4:78511445-78511464 | None:intergenic | 35.0% |
| GTACATAGTCTATTTCCATC+AGG | + | chr3_4:78511486-78511505 | Msa0524970:intron | 35.0% | |
| TTGGATCACTTCTTGTGATA+TGG | + | chr3_4:78511633-78511652 | Msa0524970:CDS | 35.0% | |
| TGGATCACTTCTTGTGATAT+GGG | + | chr3_4:78511634-78511653 | Msa0524970:CDS | 35.0% | |
| ! | CTGGTCAAAGAAGGAATTTT+AGG | + | chr3_4:78511659-78511678 | Msa0524970:CDS | 35.0% |
| ATATGAAAAAGGTTACTGCC+AGG | + | chr3_4:78511774-78511793 | Msa0524970:CDS | 35.0% | |
| TATGAAAAAGGTTACTGCCA+GGG | + | chr3_4:78511775-78511794 | Msa0524970:CDS | 35.0% | |
| CCAAAAGGAATTTGGAAGAA+AGG | - | chr3_4:78511896-78511915 | None:intergenic | 35.0% | |
| ! | CCTTTCTTCCAAATTCCTTT+TGG | + | chr3_4:78511893-78511912 | Msa0524970:three_prime_UTR | 35.0% |
| CTATGTCTATCTGTTCCAAA+AGG | - | chr3_4:78511911-78511930 | None:intergenic | 35.0% | |
| AAATCATCACCTTCATCCAA+GGG | + | chr3_4:78510521-78510540 | Msa0524970:CDS | 35.0% | |
| ATTTCCTGTTCCACTTGTAA+AGG | + | chr3_4:78510763-78510782 | Msa0524970:CDS | 35.0% | |
| TTTCCTGTTCCACTTGTAAA+GGG | + | chr3_4:78510764-78510783 | Msa0524970:CDS | 35.0% | |
| TACAAAAGACCCTTTACAAG+TGG | - | chr3_4:78510776-78510795 | None:intergenic | 35.0% | |
| GAGAGTTCATGGAAATAACA+TGG | + | chr3_4:78511016-78511035 | Msa0524970:intron | 35.0% | |
| GCAAATAGACAAGAACAACT+AGG | - | chr3_4:78511401-78511420 | None:intergenic | 35.0% | |
| !! | ACTTGTTATAAGGCAGATGA+AGG | - | chr3_4:78511435-78511454 | None:intergenic | 35.0% |
| !! | ATCCAAAGGGACTTGTTATA+AGG | - | chr3_4:78511445-78511464 | None:intergenic | 35.0% |
| GTACATAGTCTATTTCCATC+AGG | + | chr3_4:78511486-78511505 | Msa0524970:intron | 35.0% | |
| TTGGATCACTTCTTGTGATA+TGG | + | chr3_4:78511633-78511652 | Msa0524970:CDS | 35.0% | |
| TGGATCACTTCTTGTGATAT+GGG | + | chr3_4:78511634-78511653 | Msa0524970:CDS | 35.0% | |
| ! | CTGGTCAAAGAAGGAATTTT+AGG | + | chr3_4:78511659-78511678 | Msa0524970:CDS | 35.0% |
| ATATGAAAAAGGTTACTGCC+AGG | + | chr3_4:78511774-78511793 | Msa0524970:CDS | 35.0% | |
| TATGAAAAAGGTTACTGCCA+GGG | + | chr3_4:78511775-78511794 | Msa0524970:CDS | 35.0% | |
| CCAAAAGGAATTTGGAAGAA+AGG | - | chr3_4:78511896-78511915 | None:intergenic | 35.0% | |
| ! | CCTTTCTTCCAAATTCCTTT+TGG | + | chr3_4:78511893-78511912 | Msa0524970:three_prime_UTR | 35.0% |
| CTATGTCTATCTGTTCCAAA+AGG | - | chr3_4:78511911-78511930 | None:intergenic | 35.0% | |
| ATCTTCTTCTTCCTTCTCCA+TGG | + | chr3_4:78510478-78510497 | Msa0524970:exon | 40.0% | |
| AGATACAACTTGTGTTGCCA+TGG | - | chr3_4:78510498-78510517 | None:intergenic | 40.0% | |
| GAAATCATCACCTTCATCCA+AGG | + | chr3_4:78510520-78510539 | Msa0524970:CDS | 40.0% | |
| ! | CTTGGAAGATGATGATGAGT+AGG | - | chr3_4:78510580-78510599 | None:intergenic | 40.0% |
| !! | TTTGGGAGTACCTGAAAAGA+GGG | - | chr3_4:78510604-78510623 | None:intergenic | 40.0% |
| AACTAGGAACAGTCATGTTG+TGG | - | chr3_4:78510826-78510845 | None:intergenic | 40.0% | |
| ACAACATGACTGTTCCTAGT+TGG | + | chr3_4:78510825-78510844 | Msa0524970:CDS | 40.0% | |
| CAACATGACTGTTCCTAGTT+GGG | + | chr3_4:78510826-78510845 | Msa0524970:CDS | 40.0% | |
| ! | TCCTAGTTGGGATAGTTTGT+TGG | + | chr3_4:78510838-78510857 | Msa0524970:CDS | 40.0% |
| TCCAACAAACTATCCCAACT+AGG | - | chr3_4:78510842-78510861 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAGAGTTCA+TGG | + | chr3_4:78511005-78511024 | Msa0524970:intron | 40.0% | |
| TGCCTTATAACAAGTCCCTT+TGG | + | chr3_4:78511440-78511459 | Msa0524970:intron | 40.0% | |
| CTATTTCCATCAGGTCTATG+CGG | + | chr3_4:78511495-78511514 | Msa0524970:intron | 40.0% | |
| TATTTCCATCAGGTCTATGC+GGG | + | chr3_4:78511496-78511515 | Msa0524970:intron | 40.0% | |
| ATGATTTATCAGGTCCTTGC+AGG | + | chr3_4:78511548-78511567 | Msa0524970:intron | 40.0% | |
| !! | CTTGTTGGTATTCTGAAACC+CGG | + | chr3_4:78511596-78511615 | Msa0524970:CDS | 40.0% |
| TCCAAACATGCTCATTCTAC+CGG | - | chr3_4:78511618-78511637 | None:intergenic | 40.0% | |
| GGATCACTTCTTGTGATATG+GGG | + | chr3_4:78511635-78511654 | Msa0524970:CDS | 40.0% | |
| TTCGCAGGATCAGTATTTAC+TGG | - | chr3_4:78511689-78511708 | None:intergenic | 40.0% | |
| TCATGGCAAACACCATTGTT+GGG | - | chr3_4:78511727-78511746 | None:intergenic | 40.0% | |
| ATCATGGCAAACACCATTGT+TGG | - | chr3_4:78511728-78511747 | None:intergenic | 40.0% | |
| ! | AGACAAGAAGGCACATATCA+TGG | - | chr3_4:78511744-78511763 | None:intergenic | 40.0% |
| GACTTTGATGAGCTCTTAAG+AGG | - | chr3_4:78511827-78511846 | None:intergenic | 40.0% | |
| ATCTTCTTCTTCCTTCTCCA+TGG | + | chr3_4:78510478-78510497 | Msa0524970:exon | 40.0% | |
| AGATACAACTTGTGTTGCCA+TGG | - | chr3_4:78510498-78510517 | None:intergenic | 40.0% | |
| GAAATCATCACCTTCATCCA+AGG | + | chr3_4:78510520-78510539 | Msa0524970:CDS | 40.0% | |
| ! | CTTGGAAGATGATGATGAGT+AGG | - | chr3_4:78510580-78510599 | None:intergenic | 40.0% |
| !! | TTTGGGAGTACCTGAAAAGA+GGG | - | chr3_4:78510604-78510623 | None:intergenic | 40.0% |
| AACTAGGAACAGTCATGTTG+TGG | - | chr3_4:78510826-78510845 | None:intergenic | 40.0% | |
| ACAACATGACTGTTCCTAGT+TGG | + | chr3_4:78510825-78510844 | Msa0524970:CDS | 40.0% | |
| CAACATGACTGTTCCTAGTT+GGG | + | chr3_4:78510826-78510845 | Msa0524970:CDS | 40.0% | |
| ! | TCCTAGTTGGGATAGTTTGT+TGG | + | chr3_4:78510838-78510857 | Msa0524970:CDS | 40.0% |
| TCCAACAAACTATCCCAACT+AGG | - | chr3_4:78510842-78510861 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAGAGTTCA+TGG | + | chr3_4:78511005-78511024 | Msa0524970:intron | 40.0% | |
| TGCCTTATAACAAGTCCCTT+TGG | + | chr3_4:78511440-78511459 | Msa0524970:intron | 40.0% | |
| CTATTTCCATCAGGTCTATG+CGG | + | chr3_4:78511495-78511514 | Msa0524970:intron | 40.0% | |
| TATTTCCATCAGGTCTATGC+GGG | + | chr3_4:78511496-78511515 | Msa0524970:intron | 40.0% | |
| ATGATTTATCAGGTCCTTGC+AGG | + | chr3_4:78511548-78511567 | Msa0524970:intron | 40.0% | |
| !! | CTTGTTGGTATTCTGAAACC+CGG | + | chr3_4:78511596-78511615 | Msa0524970:CDS | 40.0% |
| TCCAAACATGCTCATTCTAC+CGG | - | chr3_4:78511618-78511637 | None:intergenic | 40.0% | |
| GGATCACTTCTTGTGATATG+GGG | + | chr3_4:78511635-78511654 | Msa0524970:CDS | 40.0% | |
| TTCGCAGGATCAGTATTTAC+TGG | - | chr3_4:78511689-78511708 | None:intergenic | 40.0% | |
| TCATGGCAAACACCATTGTT+GGG | - | chr3_4:78511727-78511746 | None:intergenic | 40.0% | |
| ATCATGGCAAACACCATTGT+TGG | - | chr3_4:78511728-78511747 | None:intergenic | 40.0% | |
| ! | AGACAAGAAGGCACATATCA+TGG | - | chr3_4:78511744-78511763 | None:intergenic | 40.0% |
| GACTTTGATGAGCTCTTAAG+AGG | - | chr3_4:78511827-78511846 | None:intergenic | 40.0% | |
| AACTTGTGTTGCCATGGAGA+AGG | - | chr3_4:78510492-78510511 | None:intergenic | 45.0% | |
| ATGTTCCATCCCTTGGATGA+AGG | - | chr3_4:78510533-78510552 | None:intergenic | 45.0% | |
| TGAGGAAATGTTCCATCCCT+TGG | - | chr3_4:78510540-78510559 | None:intergenic | 45.0% | |
| ! | TCTTCCAAGTCCCTCTTTTC+AGG | + | chr3_4:78510591-78510610 | Msa0524970:CDS | 45.0% |
| AGTACCTGAAAAGAGGGACT+TGG | - | chr3_4:78510598-78510617 | None:intergenic | 45.0% | |
| !! | GTTTGGGAGTACCTGAAAAG+AGG | - | chr3_4:78510605-78510624 | None:intergenic | 45.0% |
| TACAGGGTTACATGCAGATC+TGG | + | chr3_4:78510686-78510705 | Msa0524970:intron | 45.0% | |
| AGACCCTTTACAAGTGGAAC+AGG | - | chr3_4:78510770-78510789 | None:intergenic | 45.0% | |
| ! | GTAAAGGGTCTTTTGTACCC+TGG | + | chr3_4:78510779-78510798 | Msa0524970:CDS | 45.0% |
| !! | TACCCTGGTGCTGCTTTAAA+TGG | + | chr3_4:78510794-78510813 | Msa0524970:CDS | 45.0% |
| GAACAGTCATGTTGTGGATG+AGG | - | chr3_4:78510820-78510839 | None:intergenic | 45.0% | |
| TGCAGAAGCTTCCTTGATAG+TGG | - | chr3_4:78510879-78510898 | None:intergenic | 45.0% | |
| AGTAACCGATCTTCAACGCT+TGG | + | chr3_4:78510898-78510917 | Msa0524970:CDS | 45.0% | |
| !! | AACCTCCAAGCGTTGAAGAT+CGG | - | chr3_4:78510906-78510925 | None:intergenic | 45.0% |
| CCAAACATGCTCATTCTACC+GGG | - | chr3_4:78511617-78511636 | None:intergenic | 45.0% | |
| ACTTCTTGTGATATGGGGAC+TGG | + | chr3_4:78511640-78511659 | Msa0524970:CDS | 45.0% | |
| !! | ATATGGGGACTGGTCAAAGA+AGG | + | chr3_4:78511650-78511669 | Msa0524970:CDS | 45.0% |
| TGTCTACGTCTACCCAACAA+TGG | + | chr3_4:78511712-78511731 | Msa0524970:CDS | 45.0% | |
| TAAGAGGTTTAGCAGTGGAC+CGG | - | chr3_4:78511811-78511830 | None:intergenic | 45.0% | |
| GCTCTTAAGAGGTTTAGCAG+TGG | - | chr3_4:78511816-78511835 | None:intergenic | 45.0% | |
| AACTTGTGTTGCCATGGAGA+AGG | - | chr3_4:78510492-78510511 | None:intergenic | 45.0% | |
| ATGTTCCATCCCTTGGATGA+AGG | - | chr3_4:78510533-78510552 | None:intergenic | 45.0% | |
| TGAGGAAATGTTCCATCCCT+TGG | - | chr3_4:78510540-78510559 | None:intergenic | 45.0% | |
| ! | TCTTCCAAGTCCCTCTTTTC+AGG | + | chr3_4:78510591-78510610 | Msa0524970:CDS | 45.0% |
| AGTACCTGAAAAGAGGGACT+TGG | - | chr3_4:78510598-78510617 | None:intergenic | 45.0% | |
| !! | GTTTGGGAGTACCTGAAAAG+AGG | - | chr3_4:78510605-78510624 | None:intergenic | 45.0% |
| TACAGGGTTACATGCAGATC+TGG | + | chr3_4:78510686-78510705 | Msa0524970:intron | 45.0% | |
| AGACCCTTTACAAGTGGAAC+AGG | - | chr3_4:78510770-78510789 | None:intergenic | 45.0% | |
| ! | GTAAAGGGTCTTTTGTACCC+TGG | + | chr3_4:78510779-78510798 | Msa0524970:CDS | 45.0% |
| !! | TACCCTGGTGCTGCTTTAAA+TGG | + | chr3_4:78510794-78510813 | Msa0524970:CDS | 45.0% |
| GAACAGTCATGTTGTGGATG+AGG | - | chr3_4:78510820-78510839 | None:intergenic | 45.0% | |
| TGCAGAAGCTTCCTTGATAG+TGG | - | chr3_4:78510879-78510898 | None:intergenic | 45.0% | |
| AGTAACCGATCTTCAACGCT+TGG | + | chr3_4:78510898-78510917 | Msa0524970:CDS | 45.0% | |
| !! | AACCTCCAAGCGTTGAAGAT+CGG | - | chr3_4:78510906-78510925 | None:intergenic | 45.0% |
| CCAAACATGCTCATTCTACC+GGG | - | chr3_4:78511617-78511636 | None:intergenic | 45.0% | |
| ACTTCTTGTGATATGGGGAC+TGG | + | chr3_4:78511640-78511659 | Msa0524970:CDS | 45.0% | |
| !! | ATATGGGGACTGGTCAAAGA+AGG | + | chr3_4:78511650-78511669 | Msa0524970:CDS | 45.0% |
| TGTCTACGTCTACCCAACAA+TGG | + | chr3_4:78511712-78511731 | Msa0524970:CDS | 45.0% | |
| TAAGAGGTTTAGCAGTGGAC+CGG | - | chr3_4:78511811-78511830 | None:intergenic | 45.0% | |
| GCTCTTAAGAGGTTTAGCAG+TGG | - | chr3_4:78511816-78511835 | None:intergenic | 45.0% | |
| !!! | ATTAAGTTTTTTTTTTTTTT+TGG | + | chr3_4:78511156-78511175 | Msa0524970:intron | 5.0% |
| !!! | ATTAAGTTTTTTTTTTTTTT+TGG | + | chr3_4:78511156-78511175 | Msa0524970:intron | 5.0% |
| GTTGTGTGCCAACAGGAACA+GGG | - | chr3_4:78510422-78510441 | None:intergenic | 50.0% | |
| AGTTGTGTGCCAACAGGAAC+AGG | - | chr3_4:78510423-78510442 | None:intergenic | 50.0% | |
| TGTTCCTGTTGGCACACAAC+TGG | + | chr3_4:78510422-78510441 | Msa0524970:five_prime_UTR | 50.0% | |
| GTTCCTGTTGGCACACAACT+GGG | + | chr3_4:78510423-78510442 | Msa0524970:five_prime_UTR | 50.0% | |
| GCACACAACTGGGAAGAAGT+TGG | + | chr3_4:78510433-78510452 | Msa0524970:five_prime_UTR | 50.0% | |
| GATCAGATGCTTCTCGACGA+TGG | - | chr3_4:78510461-78510480 | None:intergenic | 50.0% | |
| CATCACCTTCATCCAAGGGA+TGG | + | chr3_4:78510525-78510544 | Msa0524970:CDS | 50.0% | |
| ! | GGCCATTTAAAGCAGCACCA+GGG | - | chr3_4:78510799-78510818 | None:intergenic | 50.0% |
| ! | AGGCCATTTAAAGCAGCACC+AGG | - | chr3_4:78510800-78510819 | None:intergenic | 50.0% |
| AACCGATCTTCAACGCTTGG+AGG | + | chr3_4:78510901-78510920 | Msa0524970:CDS | 50.0% | |
| ! | CGGGCACTTTTCAGTTAACC+TGG | + | chr3_4:78511515-78511534 | Msa0524970:intron | 50.0% |
| CTGCAAAGTAGCTTCCTGCA+AGG | - | chr3_4:78511565-78511584 | None:intergenic | 50.0% | |
| ! | GGAAGCTACTTTGCAGTAGC+AGG | + | chr3_4:78511569-78511588 | Msa0524970:CDS | 50.0% |
| CCCGGTAGAATGAGCATGTT+TGG | + | chr3_4:78511614-78511633 | Msa0524970:CDS | 50.0% | |
| TAGACGTAGACAGCTTTCGC+AGG | - | chr3_4:78511704-78511723 | None:intergenic | 50.0% | |
| GAAAAAGGTTACTGCCAGGG+CGG | + | chr3_4:78511778-78511797 | Msa0524970:CDS | 50.0% | |
| GTTGTGTGCCAACAGGAACA+GGG | - | chr3_4:78510422-78510441 | None:intergenic | 50.0% | |
| AGTTGTGTGCCAACAGGAAC+AGG | - | chr3_4:78510423-78510442 | None:intergenic | 50.0% | |
| TGTTCCTGTTGGCACACAAC+TGG | + | chr3_4:78510422-78510441 | Msa0524970:five_prime_UTR | 50.0% | |
| GTTCCTGTTGGCACACAACT+GGG | + | chr3_4:78510423-78510442 | Msa0524970:five_prime_UTR | 50.0% | |
| GCACACAACTGGGAAGAAGT+TGG | + | chr3_4:78510433-78510452 | Msa0524970:five_prime_UTR | 50.0% | |
| GATCAGATGCTTCTCGACGA+TGG | - | chr3_4:78510461-78510480 | None:intergenic | 50.0% | |
| CATCACCTTCATCCAAGGGA+TGG | + | chr3_4:78510525-78510544 | Msa0524970:CDS | 50.0% | |
| ! | GGCCATTTAAAGCAGCACCA+GGG | - | chr3_4:78510799-78510818 | None:intergenic | 50.0% |
| ! | AGGCCATTTAAAGCAGCACC+AGG | - | chr3_4:78510800-78510819 | None:intergenic | 50.0% |
| AACCGATCTTCAACGCTTGG+AGG | + | chr3_4:78510901-78510920 | Msa0524970:CDS | 50.0% | |
| ! | CGGGCACTTTTCAGTTAACC+TGG | + | chr3_4:78511515-78511534 | Msa0524970:intron | 50.0% |
| CTGCAAAGTAGCTTCCTGCA+AGG | - | chr3_4:78511565-78511584 | None:intergenic | 50.0% | |
| ! | GGAAGCTACTTTGCAGTAGC+AGG | + | chr3_4:78511569-78511588 | Msa0524970:CDS | 50.0% |
| CCCGGTAGAATGAGCATGTT+TGG | + | chr3_4:78511614-78511633 | Msa0524970:CDS | 50.0% | |
| TAGACGTAGACAGCTTTCGC+AGG | - | chr3_4:78511704-78511723 | None:intergenic | 50.0% | |
| GAAAAAGGTTACTGCCAGGG+CGG | + | chr3_4:78511778-78511797 | Msa0524970:CDS | 50.0% | |
| CTTCCCAGTTGTGTGCCAAC+AGG | - | chr3_4:78510429-78510448 | None:intergenic | 55.0% | |
| GTAGATGCGTGCTGCGATTG+AGG | - | chr3_4:78510558-78510577 | None:intergenic | 55.0% | |
| AAGTGCCCGCATAGACCTGA+TGG | - | chr3_4:78511504-78511523 | None:intergenic | 55.0% | |
| !! | GCAGTAGCAGGAGCACTTGT+TGG | + | chr3_4:78511581-78511600 | Msa0524970:CDS | 55.0% |
| TTTAGCAGTGGACCGGACAG+GGG | - | chr3_4:78511804-78511823 | None:intergenic | 55.0% | |
| GTTTAGCAGTGGACCGGACA+GGG | - | chr3_4:78511805-78511824 | None:intergenic | 55.0% | |
| CTTCCCAGTTGTGTGCCAAC+AGG | - | chr3_4:78510429-78510448 | None:intergenic | 55.0% | |
| GTAGATGCGTGCTGCGATTG+AGG | - | chr3_4:78510558-78510577 | None:intergenic | 55.0% | |
| AAGTGCCCGCATAGACCTGA+TGG | - | chr3_4:78511504-78511523 | None:intergenic | 55.0% | |
| !! | GCAGTAGCAGGAGCACTTGT+TGG | + | chr3_4:78511581-78511600 | Msa0524970:CDS | 55.0% |
| TTTAGCAGTGGACCGGACAG+GGG | - | chr3_4:78511804-78511823 | None:intergenic | 55.0% | |
| GTTTAGCAGTGGACCGGACA+GGG | - | chr3_4:78511805-78511824 | None:intergenic | 55.0% | |
| TGGGGACACCCTGTTCCTGT+TGG | + | chr3_4:78510411-78510430 | Msa0524970:five_prime_UTR | 60.0% | |
| GGTTTAGCAGTGGACCGGAC+AGG | - | chr3_4:78511806-78511825 | None:intergenic | 60.0% | |
| TGGGGACACCCTGTTCCTGT+TGG | + | chr3_4:78510411-78510430 | Msa0524970:five_prime_UTR | 60.0% | |
| GGTTTAGCAGTGGACCGGAC+AGG | - | chr3_4:78511806-78511825 | None:intergenic | 60.0% | |
| ! | CTGCCAGGGCGGCCCCTGTC+CGG | + | chr3_4:78511789-78511808 | Msa0524970:CDS | 80.0% |
| ! | CTGCCAGGGCGGCCCCTGTC+CGG | + | chr3_4:78511789-78511808 | Msa0524970:CDS | 80.0% |
| ! | GGACCGGACAGGGGCCGCCC+TGG | - | chr3_4:78511795-78511814 | None:intergenic | 85.0% |
| ! | GGACCGGACAGGGGCCGCCC+TGG | - | chr3_4:78511795-78511814 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78510401 | 78512010 | 78510401 | ID=Msa0524970;Name=Msa0524970 |
| chr3_4 | mRNA | 78510401 | 78512010 | 78510401 | ID=Msa0524970-mRNA-1;Parent=Msa0524970;Name=Msa0524970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=96|1|1|1|1|1|3|151|215 |
| chr3_4 | exon | 78510401 | 78510612 | 78510401 | ID=Msa0524970-mRNA-1:exon:23301;Parent=Msa0524970-mRNA-1 |
| chr3_4 | exon | 78510691 | 78510922 | 78510691 | ID=Msa0524970-mRNA-1:exon:23302;Parent=Msa0524970-mRNA-1 |
| chr3_4 | exon | 78511560 | 78512010 | 78511560 | ID=Msa0524970-mRNA-1:exon:23303;Parent=Msa0524970-mRNA-1 |
| chr3_4 | five_prime_UTR | 78510401 | 78510496 | 78510401 | ID=Msa0524970-mRNA-1:five_prime_utr;Parent=Msa0524970-mRNA-1 |
| chr3_4 | CDS | 78510497 | 78510612 | 78510497 | ID=Msa0524970-mRNA-1:cds;Parent=Msa0524970-mRNA-1 |
| chr3_4 | CDS | 78510691 | 78510922 | 78510691 | ID=Msa0524970-mRNA-1:cds;Parent=Msa0524970-mRNA-1 |
| chr3_4 | CDS | 78511560 | 78511859 | 78511560 | ID=Msa0524970-mRNA-1:cds;Parent=Msa0524970-mRNA-1 |
| chr3_4 | three_prime_UTR | 78511860 | 78512010 | 78511860 | ID=Msa0524970-mRNA-1:three_prime_utr;Parent=Msa0524970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
