AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0446050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446050 MtrunA17_Chr3g0086861 79.901 403 51 5 1 381 1 395 3.17e-178 509
Msa0446050 MtrunA17_Chr3g0086861 78.439 269 19 5 242 479 175 435 3.86e-91 286
Msa0446050 MtrunA17_Chr3g0086861 58.696 92 31 3 376 463 168 256 4.72e-12 68.2
Msa0446050 MtrunA17_Chr4g0061451 72.800 125 32 1 1 125 1 123 3.13e-62 205
Msa0446050 MtrunA17_Chr7g0219021 60.938 128 46 2 1 128 1 124 4.09e-47 164
Msa0446050 MtrunA17_Chr7g0219031 59.091 110 41 2 1 110 1 106 4.55e-33 122
Msa0446050 MtrunA17_Chr3g0121631 46.774 124 57 3 1 124 1 115 8.45e-29 111
Msa0446050 MtrunA17_Chr3g0119311 52.439 82 39 0 45 126 37 118 2.68e-22 92.8
Msa0446050 MtrunA17_Chr4g0035001 52.703 74 35 0 45 118 7 80 7.82e-21 89.4
Msa0446050 MtrunA17_Chr3g0116631 44.211 95 51 1 33 127 197 289 3.56e-20 90.9
Msa0446050 MtrunA17_Chr3g0116631 45.783 83 43 1 45 127 110 190 3.46e-12 67.4
Msa0446050 MtrunA17_Chr4g0035051 49.351 77 39 0 45 121 9 85 3.57e-20 86.3
Msa0446050 MtrunA17_Chr7g0266751 41.346 104 61 0 45 148 33 136 4.09e-20 86.7
Msa0446050 MtrunA17_Chr7g0263001 39.683 126 66 2 1 125 1 117 9.69e-20 85.9
Msa0446050 MtrunA17_Chr4g0035031 48.052 77 40 0 45 121 9 85 9.82e-20 87.4
Msa0446050 MtrunA17_Chr2g0278661 40.476 84 50 0 38 121 1 84 6.82e-19 86.3
Msa0446050 MtrunA17_Chr4g0058151 51.220 82 40 0 47 128 219 300 9.26e-19 87.0
Msa0446050 MtrunA17_Chr4g0058151 42.857 84 46 1 43 126 121 202 1.23e-12 68.9
Msa0446050 MtrunA17_Chr4g0031091 40.000 90 54 0 33 122 22 111 1.01e-18 82.0
Msa0446050 MtrunA17_Chr1g0210241 40.698 86 51 0 38 123 1 86 2.49e-18 85.1
Msa0446050 MtrunA17_Chr1g0181111 45.349 86 47 0 43 128 195 280 3.66e-18 84.7
Msa0446050 MtrunA17_Chr4g0042161 44.578 83 46 0 42 124 49 131 3.93e-18 81.3
Msa0446050 MtrunA17_Chr3g0088511 40.196 102 57 2 19 118 7 106 5.83e-16 74.7
Msa0446050 MtrunA17_Chr6g0481071 41.250 80 47 0 44 123 95 174 1.64e-15 74.7
Msa0446050 MtrunA17_Chr3g0144311 41.237 97 54 3 32 126 16 111 3.85e-15 75.9
Msa0446050 MtrunA17_Chr3g0101061 38.017 121 71 2 3 123 1 117 6.52e-15 77.4
Msa0446050 MtrunA17_Chr5g0447761 44.304 79 42 1 45 123 7 83 1.99e-14 75.9
Msa0446050 MtrunA17_Chr4g0017401 38.824 85 49 2 38 121 10 92 6.68e-14 72.0
Msa0446050 MtrunA17_Chr7g0276531 41.667 84 48 1 38 121 12 94 8.49e-14 71.6
Msa0446050 MtrunA17_Chr2g0327921 42.500 80 46 0 44 123 7 86 1.09e-13 66.6
Msa0446050 MtrunA17_Chr3g0127751 39.326 89 49 2 44 130 26 111 1.10e-13 71.2
Msa0446050 MtrunA17_Chr4g0042151 41.379 87 49 1 39 125 39 123 1.53e-13 69.3
Msa0446050 MtrunA17_Chr3g0110211 40.506 79 46 1 46 123 114 192 1.97e-13 72.0
Msa0446050 MtrunA17_Chr8g0346011 32.051 156 82 4 44 176 37 191 2.70e-13 70.5
Msa0446050 MtrunA17_Chr1g0168601 41.463 82 46 1 42 121 149 230 2.90e-13 69.7
Msa0446050 MtrunA17_Chr3g0135111 41.837 98 55 1 45 142 11 106 3.68e-13 71.2
Msa0446050 MtrunA17_Chr5g0419351 36.957 92 57 1 40 130 6 97 4.02e-13 67.8
Msa0446050 MtrunA17_Chr1g0198431 37.500 80 50 0 45 124 193 272 4.09e-13 70.1
Msa0446050 MtrunA17_Chr4g0050441 43.421 76 43 0 46 121 18 93 9.23e-13 68.9
Msa0446050 MtrunA17_Chr5g0429941 43.421 76 43 0 46 121 18 93 1.33e-12 68.2
Msa0446050 MtrunA17_Chr1g0186351 36.986 73 43 1 45 114 7 79 2.36e-12 69.3
Msa0446050 MtrunA17_Chr1g0186351 39.474 76 45 1 45 120 113 187 6.82e-11 64.7
Msa0446050 MtrunA17_Chr7g0267571 32.090 134 82 3 45 178 110 234 2.59e-12 68.2
Msa0446050 MtrunA17_Chr8g0344491 40.260 77 46 0 46 122 149 225 6.47e-12 67.8
Msa0446050 MtrunA17_Chr5g0426311 40.476 84 49 1 38 121 10 92 6.52e-12 66.2
Msa0446050 MtrunA17_Chr4g0070231 41.558 77 45 0 46 122 133 209 7.73e-12 67.4
Msa0446050 MtrunA17_Chr1g0201001 39.080 87 50 1 38 121 20 106 9.30e-12 67.4
Msa0446050 MtrunA17_Chr7g0268551 40.000 80 48 0 39 118 343 422 9.58e-12 67.0
Msa0446050 MtrunA17_Chr3g0139111 38.961 77 47 0 46 122 147 223 3.82e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446050 AT5G61030.2 57.724 123 48 2 1 123 1 119 1.40e-45 162
Msa0446050 AT5G61030.1 57.724 123 48 2 1 123 1 119 1.40e-45 162
Msa0446050 AT1G74230.1 54.918 122 44 3 1 122 1 111 9.94e-37 138
Msa0446050 AT4G13850.4 46.094 128 52 3 1 124 1 115 2.00e-27 107
Msa0446050 AT4G13850.3 46.094 128 52 3 1 124 1 115 2.08e-27 107
Msa0446050 AT4G13850.2 46.094 128 52 3 1 124 1 115 2.68e-27 107
Msa0446050 AT4G13850.1 46.094 128 52 3 1 124 1 115 3.08e-27 107
Msa0446050 AT3G23830.2 50.562 89 41 1 43 128 34 122 8.44e-25 100
Msa0446050 AT3G23830.1 50.562 89 41 1 43 128 34 122 8.44e-25 100
Msa0446050 AT5G06210.1 48.454 97 42 1 44 140 34 122 3.51e-23 95.9
Msa0446050 AT4G24770.1 51.807 83 40 0 42 124 242 324 1.33e-21 96.3
Msa0446050 AT4G24770.1 45.783 83 43 1 45 127 151 231 1.02e-13 72.8
Msa0446050 AT4G24770.2 51.807 83 40 0 42 124 242 324 1.33e-21 96.3
Msa0446050 AT4G24770.2 45.783 83 43 1 45 127 151 231 1.02e-13 72.8
Msa0446050 AT1G18630.1 48.148 81 41 1 38 118 31 110 6.54e-20 87.0
Msa0446050 AT3G08000.1 53.012 83 39 0 45 127 42 124 6.80e-20 86.7
Msa0446050 AT2G21660.1 49.398 83 42 0 39 121 3 85 7.07e-20 87.8
Msa0446050 AT2G37220.1 48.750 80 41 0 45 124 205 284 5.25e-19 87.8
Msa0446050 AT2G37220.1 38.053 113 59 3 12 118 58 165 9.67e-12 66.2
Msa0446050 AT5G50250.1 50.617 81 40 0 45 125 208 288 5.99e-19 87.8
Msa0446050 AT5G50250.1 45.783 83 43 1 45 127 114 194 1.23e-14 75.1
Msa0446050 AT3G26420.1 38.095 84 52 0 38 121 1 84 1.14e-17 83.2
Msa0446050 AT2G37510.1 49.351 77 38 1 36 112 27 102 1.96e-17 79.7
Msa0446050 AT5G59865.1 41.053 95 55 1 30 123 11 105 3.34e-17 78.2
Msa0446050 AT3G53460.1 47.059 85 44 1 45 128 258 342 3.41e-17 83.6
Msa0446050 AT3G53460.3 47.059 85 44 1 45 128 258 342 3.41e-17 83.6
Msa0446050 AT3G53460.2 47.059 85 44 1 45 128 258 342 3.41e-17 83.6
Msa0446050 AT2G21660.2 50.000 82 41 0 39 120 3 84 3.57e-17 79.3
Msa0446050 AT3G53460.4 47.059 85 44 1 45 128 279 363 5.80e-17 83.2
Msa0446050 AT1G73530.1 40.206 97 51 1 42 131 75 171 7.60e-17 79.0
Msa0446050 AT4G13860.1 48.684 76 39 0 44 119 3 78 2.51e-16 74.7
Msa0446050 AT2G27330.1 46.154 78 42 0 38 115 15 92 2.95e-16 75.5
Msa0446050 AT5G47320.1 48.148 81 42 0 44 124 31 111 3.24e-16 78.2
Msa0446050 AT5G04280.1 38.614 101 60 1 44 144 7 105 3.25e-16 80.1
Msa0446050 AT3G54770.3 42.353 85 48 1 37 121 10 93 3.69e-16 79.0
Msa0446050 AT3G54770.1 42.353 85 48 1 37 121 10 93 4.70e-16 78.6
Msa0446050 AT4G39260.1 44.737 76 42 0 45 120 7 82 8.49e-16 75.9
Msa0446050 AT3G46020.1 41.573 89 50 1 43 129 6 94 1.64e-15 72.8
Msa0446050 AT1G76460.1 41.935 93 52 2 38 129 18 109 2.95e-15 76.6
Msa0446050 AT4G39260.3 44.578 83 46 0 45 127 7 89 6.97e-15 70.9
Msa0446050 AT2G21690.1 43.662 71 40 0 47 117 10 80 8.75e-15 71.2
Msa0446050 AT3G07810.1 43.210 81 44 1 43 123 5 83 1.90e-14 76.3
Msa0446050 AT3G07810.2 43.210 81 44 1 43 123 5 83 1.96e-14 76.3
Msa0446050 AT5G55550.5 45.570 79 41 1 45 123 7 83 3.31e-14 75.5
Msa0446050 AT5G55550.4 45.570 79 41 1 45 123 7 83 3.31e-14 75.5
Msa0446050 AT5G55550.9 45.570 79 41 1 45 123 7 83 3.31e-14 75.5
Msa0446050 AT5G55550.7 45.570 79 41 1 45 123 7 83 3.31e-14 75.5
Msa0446050 AT5G55550.1 45.570 79 41 1 45 123 7 83 3.31e-14 75.5
Msa0446050 AT1G22330.1 40.678 118 62 5 38 151 11 124 3.31e-14 73.9
Msa0446050 AT5G54580.1 44.048 84 45 1 42 125 54 135 3.43e-14 70.9
Msa0446050 AT1G22910.2 40.506 79 44 2 44 121 13 89 4.08e-14 72.8
Msa0446050 AT5G55550.2 45.570 79 41 1 45 123 7 83 4.09e-14 75.1
Msa0446050 AT5G55550.3 45.570 79 41 1 45 123 7 83 4.09e-14 75.1
Msa0446050 AT5G55550.6 45.570 79 41 1 45 123 7 83 4.09e-14 75.1
Msa0446050 AT5G55550.11 45.570 79 41 1 45 123 7 83 4.09e-14 75.1
Msa0446050 AT2G46780.1 37.778 90 52 2 39 125 17 105 4.90e-14 73.9
Msa0446050 AT2G46780.2 37.778 90 52 2 39 125 17 105 4.90e-14 73.9
Msa0446050 AT1G22910.1 40.506 79 44 2 44 121 13 89 5.04e-14 72.4
Msa0446050 AT5G55550.8 47.887 71 35 1 45 115 7 75 6.69e-14 74.7
Msa0446050 AT5G55550.10 47.887 71 35 1 45 115 7 75 7.34e-14 74.3
Msa0446050 AT1G60000.1 45.122 82 43 1 42 121 173 254 7.99e-14 72.0
Msa0446050 AT1G20880.2 42.353 85 46 2 38 121 18 100 9.57e-14 72.0
Msa0446050 AT1G20880.3 42.353 85 46 2 38 121 18 100 9.57e-14 72.0
Msa0446050 AT1G20880.1 42.353 85 46 2 38 121 18 100 9.57e-14 72.0
Msa0446050 AT4G26650.1 43.038 79 43 1 45 123 16 92 1.65e-13 73.2
Msa0446050 AT3G52380.1 44.578 83 45 1 45 127 117 198 1.67e-13 72.0
Msa0446050 AT4G26650.2 43.038 79 43 1 45 123 13 89 1.85e-13 73.2
Msa0446050 AT4G13860.2 53.333 60 28 0 60 119 2 61 2.08e-13 65.9
Msa0446050 AT1G60650.2 37.975 79 49 0 43 121 11 89 2.57e-13 71.2
Msa0446050 AT1G60650.1 37.975 79 49 0 43 121 11 89 2.57e-13 71.2
Msa0446050 AT5G47620.1 41.333 75 41 1 43 114 5 79 4.31e-13 71.6
Msa0446050 AT5G47620.2 41.333 75 41 1 43 114 5 79 4.31e-13 71.6
Msa0446050 AT5G47620.5 41.333 75 41 1 43 114 5 79 4.31e-13 71.6
Msa0446050 AT1G22910.3 40.506 79 44 2 44 121 13 89 4.47e-13 71.2
Msa0446050 AT1G33470.1 29.944 177 109 5 44 213 7 175 4.78e-13 69.7
Msa0446050 AT1G33470.3 29.944 177 109 5 44 213 7 175 5.00e-13 69.3
Msa0446050 AT5G47620.4 45.070 71 36 1 43 110 5 75 8.01e-13 70.9
Msa0446050 AT1G33470.2 41.026 78 43 2 44 120 7 82 1.11e-12 68.6
Msa0446050 AT3G20930.1 37.500 80 50 0 45 124 283 362 1.50e-12 69.7
Msa0446050 AT2G33410.1 40.506 79 45 1 45 123 7 83 2.37e-12 69.3
Msa0446050 AT2G37510.2 37.255 102 38 2 36 112 27 127 2.93e-12 65.5
Msa0446050 AT5G64200.2 42.105 76 44 0 46 121 18 93 4.35e-12 67.4
Msa0446050 AT5G64200.1 42.105 76 44 0 46 121 18 93 4.35e-12 67.4
Msa0446050 AT5G59860.1 32.710 107 67 1 16 122 43 144 5.57e-12 64.3
Msa0446050 AT4G14300.1 40.506 79 45 1 45 123 7 83 6.98e-12 67.8
Msa0446050 AT4G14300.2 40.506 79 45 1 45 123 7 83 6.98e-12 67.8
Msa0446050 AT2G18510.1 32.174 115 65 3 17 123 83 192 7.68e-12 67.4
Msa0446050 AT1G07350.3 36.842 76 48 0 42 117 43 118 1.25e-11 62.8
Msa0446050 AT1G07350.2 36.842 76 48 0 42 117 43 118 1.25e-11 62.8
Msa0446050 AT5G11412.1 38.356 73 41 1 41 109 49 121 1.48e-11 63.5
Msa0446050 AT4G39260.4 41.429 70 41 0 45 114 7 76 1.62e-11 61.6
Msa0446050 AT3G14100.1 36.364 77 49 0 46 122 146 222 1.90e-11 66.6
Msa0446050 AT1G78260.1 38.462 78 47 1 44 121 17 93 1.94e-11 65.5
Msa0446050 AT5G19030.1 32.759 116 61 2 30 128 52 167 2.25e-11 63.2
Msa0446050 AT1G07350.5 36.842 76 48 0 42 117 73 148 2.46e-11 62.8
Msa0446050 AT1G54080.1 36.364 77 49 0 46 122 150 226 3.19e-11 65.9
Msa0446050 AT1G17370.2 37.662 77 48 0 46 122 141 217 4.20e-11 65.5
Msa0446050 AT1G17370.1 37.662 77 48 0 46 122 141 217 4.36e-11 65.5
Msa0446050 AT1G78260.2 38.462 78 47 1 44 121 17 93 7.52e-11 63.5
Msa0446050 AT5G51300.1 38.462 78 48 0 43 120 479 556 9.89e-11 65.1
Msa0446050 AT5G51300.2 38.462 78 48 0 43 120 479 556 9.89e-11 65.1
Msa0446050 AT5G51300.3 38.462 78 48 0 43 120 479 556 9.89e-11 65.1

Find 198 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCCAGGGTATTGATTA+TGG 0.153639 3_3:+21227297 None:intergenic
GCTTTCTCCACCACTGTAAT+TGG 0.187885 3_3:+21227442 None:intergenic
GGAGGTGGTGGTGGATATTC+AGG 0.196213 3_3:-21228304 Msa0446050:CDS
GTAGAGTTGGGAGTTTATTA+AGG 0.262081 3_3:-21230435 Msa0446050:CDS
CTATACCCTGTTGCACTTCC+AGG 0.289310 3_3:+21227284 None:intergenic
GCTCCTGGTGCTGGTGGTTA+TGG 0.294419 3_3:-21227398 Msa0446050:CDS
GGTTATGGCGGAGGTGGTTA+TGG 0.310693 3_3:-21228211 Msa0446050:CDS
GCACCTGGTGTTGGTGGTTA+TGG 0.314342 3_3:-21227479 Msa0446050:CDS
TATGGTGCTGCTGCTGGATT+TGG 0.314919 3_3:-21227380 Msa0446050:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_3:-21227821 Msa0446050:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_3:-21227908 Msa0446050:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_3:-21227995 Msa0446050:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_3:-21228082 Msa0446050:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.326706 3_3:-21227734 Msa0446050:CDS
GCTCCTGTTGCTGGTGTTTA+CGG 0.332135 3_3:-21227572 Msa0446050:CDS
CCAAGCCATACGGTGCTTCT+CGG 0.335689 3_3:-21230353 Msa0446050:CDS
GTTTCAGGAATGGCTTTCTT+TGG 0.351117 3_3:-21230457 Msa0446050:intron
GGTGGTTATGGTGCTGCTGC+TGG 0.354151 3_3:-21227386 Msa0446050:CDS
GCTCCCGGGAGCAGCTTTGC+TGG 0.358288 3_3:-21227248 Msa0446050:CDS
ACCACCACGGGGTCTTTCAT+TGG 0.359285 3_3:+21228348 None:intergenic
GGAGGCATCAAGTGCCATTC+AGG 0.360417 3_3:-21229588 Msa0446050:CDS
GGTGCTAACAATGCAAATTA+TGG 0.362792 3_3:-21227548 Msa0446050:CDS
CAATACCCTGGAAGTGCAAC+AGG 0.364374 3_3:-21227290 Msa0446050:CDS
ACTGGTAGGTCCAAAGGATT+TGG 0.367522 3_3:-21229635 Msa0446050:CDS
TACGGTAGTGCTCCTGTTGC+TGG 0.368507 3_3:-21227581 Msa0446050:CDS
TGGCTTTCTTTGGTAGAGTT+GGG 0.369898 3_3:-21230447 Msa0446050:CDS
GGTGGATATTCAGGTGGTTA+TGG 0.372561 3_3:-21228295 Msa0446050:CDS
TCCTACAAACAGCTTGGTAT+TGG 0.375210 3_3:+21230324 None:intergenic
ACTTCCAGGGTATTGATTAT+GGG 0.377875 3_3:+21227298 None:intergenic
TATGGAAACAATGCAAATTA+TGG 0.382926 3_3:-21227803 Msa0446050:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_3:-21227890 Msa0446050:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_3:-21227977 Msa0446050:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_3:-21228064 Msa0446050:CDS
CCTTATGGTGGTGGAGGTGG+TGG 0.387616 3_3:-21228316 Msa0446050:CDS
TATGGTGGTGGAGGTGGTGG+TGG 0.394686 3_3:-21228313 Msa0446050:CDS
GAAAGCAATTCTGTTAACTA+TGG 0.395798 3_3:-21227425 Msa0446050:CDS
GAAAGCAATTCTGTTAACTA+TGG 0.398237 3_3:-21227506 Msa0446050:CDS
TATGGTAACAATGTGAATTA+TGG 0.398804 3_3:-21227716 Msa0446050:CDS
ATAATTATGGATCGCGAAAC+TGG 0.398913 3_3:-21229653 Msa0446050:CDS
ATAGTACTGGTGGTGTTGGT+GGG 0.401213 3_3:-21227340 Msa0446050:CDS
CCTACAAACAGCTTGGTATT+GGG 0.403404 3_3:+21230325 None:intergenic
GGACCTTATGGTGGTGGAGG+TGG 0.405984 3_3:-21228319 Msa0446050:CDS
CAACACCACCAGTACTATAA+TGG 0.407080 3_3:+21227345 None:intergenic
ATCAAGTGCCATTCAGGCCT+TGG 0.407278 3_3:-21229582 Msa0446050:CDS
TATAGTACTGGTGGTGTTGG+TGG 0.414489 3_3:-21227341 Msa0446050:CDS
GGTGGAAACGATGCAAATTA+TGG 0.422269 3_3:-21228151 Msa0446050:CDS
TATGATAGAACTGGAGGACT+TGG 0.426268 3_3:-21227221 Msa0446050:CDS
ATGGCTTTCTTTGGTAGAGT+TGG 0.428552 3_3:-21230448 Msa0446050:CDS
AGTAACAAAGCCAAATCCTT+TGG 0.430233 3_3:+21229625 None:intergenic
GGCTATAGTGGTAATGCTGC+TGG 0.431605 3_3:-21228235 Msa0446050:CDS
AGCTAAGAACAACAAATTCA+AGG 0.432335 3_3:-21231379 Msa0446050:intron
GGAACTACCAGTGGTGGTTA+TGG 0.436521 3_3:-21228172 Msa0446050:CDS
GGTGGTAACAGTGCAAATTA+TGG 0.437840 3_3:-21227641 Msa0446050:CDS
TATGGTATTGCTCCTGGTGC+TGG 0.438379 3_3:-21227407 Msa0446050:CDS
GCTCCTGGTGTTGGTGGTTA+CGG 0.443707 3_3:-21227665 Msa0446050:CDS
CCCAATACCAAGCTGTTTGT+AGG 0.444353 3_3:-21230325 Msa0446050:CDS
TTTGATGGACCTTATGGTGG+TGG 0.444397 3_3:-21228325 Msa0446050:CDS
CCACCGTAAACACCAGCAAC+AGG 0.447301 3_3:+21227569 None:intergenic
CTGTCCATCCAAGGCCTGAA+TGG 0.451832 3_3:+21229574 None:intergenic
GCACCATAACCACCAGCACC+AGG 0.451978 3_3:+21227395 None:intergenic
TCTTCATACGGTGGTGGGTA+TGG 0.456251 3_3:-21228268 Msa0446050:CDS
GGTAATGCTGCTGGAGGTTA+TGG 0.457740 3_3:-21228226 Msa0446050:CDS
CAAGCCATACGGTGCTTCTC+GGG 0.458672 3_3:-21230352 Msa0446050:CDS
GGCAGTGCTCCTGGTGTTGG+TGG 0.458730 3_3:-21227671 Msa0446050:CDS
GCTAACTATGGCAGTGCTCC+TGG 0.459620 3_3:-21227680 Msa0446050:CDS
GTTAACTATGGTATTGCTCC+TGG 0.461545 3_3:-21227413 Msa0446050:CDS
GCTGCTGATACTGCTAACTA+TGG 0.470068 3_3:-21227692 Msa0446050:CDS
TATGGAAACACTTACAATGA+TGG 0.470763 3_3:-21228193 Msa0446050:CDS
CCCTTCTGCAAAATTTCGCT+AGG 0.471059 3_3:-21231441 Msa0446050:five_prime_UTR
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_3:-21227761 Msa0446050:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_3:-21227848 Msa0446050:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_3:-21227935 Msa0446050:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_3:-21228022 Msa0446050:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_3:-21228109 Msa0446050:CDS
AGTACTGGTGGTGTTGGTGG+GGG 0.472472 3_3:-21227338 Msa0446050:CDS
ACAACTCACCGTCAAGAACT+TGG 0.473731 3_3:+21229802 None:intergenic
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_3:-21227749 Msa0446050:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_3:-21227836 Msa0446050:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_3:-21227923 Msa0446050:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_3:-21228010 Msa0446050:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_3:-21228097 Msa0446050:CDS
GGTAATGCTGCTGGCTATAG+TGG 0.474270 3_3:-21228247 Msa0446050:CDS
ATTATGGGAGAAACCATTGC+TGG 0.474986 3_3:+21227313 None:intergenic
GATGGACCTTATGGTGGTGG+AGG 0.475314 3_3:-21228322 Msa0446050:CDS
TCCACCAGCAAAGCTGCTCC+CGG 0.475573 3_3:+21227244 None:intergenic
GGTGTTGGTGGTTACGGTGG+TGG 0.476651 3_3:-21227659 Msa0446050:CDS
GCTGGTGGATATGATAGAAC+TGG 0.486983 3_3:-21227230 Msa0446050:CDS
GGTGTTGGTGGTTATGGTGG+TGG 0.487083 3_3:-21227473 Msa0446050:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_3:-21227740 Msa0446050:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_3:-21227827 Msa0446050:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_3:-21227914 Msa0446050:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_3:-21228001 Msa0446050:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_3:-21228088 Msa0446050:CDS
CCGAGAAGCACCGTATGGCT+TGG 0.494835 3_3:+21230353 None:intergenic
AGTGATAACCATTATAGTAC+TGG 0.497710 3_3:-21227353 Msa0446050:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498311 3_3:-21228139 Msa0446050:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_3:-21227791 Msa0446050:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_3:-21227878 Msa0446050:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_3:-21227965 Msa0446050:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_3:-21228052 Msa0446050:CDS
TAGTACTGGTGGTGTTGGTG+GGG 0.505708 3_3:-21227339 Msa0446050:CDS
AGCAGTGGCAGTTCAGCTCC+CGG 0.508874 3_3:-21227263 Msa0446050:CDS
GGTAGTGCACCTGGTGTTGG+TGG 0.514951 3_3:-21227485 Msa0446050:CDS
CCCGGGAGCAGCTTTGCTGG+TGG 0.515216 3_3:-21227245 Msa0446050:CDS
CCACCACCTCCACCACCATA+AGG 0.516234 3_3:+21228316 None:intergenic
CGTATGGCTTGGAAAACAGA+TGG 0.517156 3_3:+21230364 None:intergenic
CATTCAGGCCTTGGATGGAC+AGG 0.517691 3_3:-21229573 Msa0446050:intron
TATGGCAGTGCTCCTGGTGT+TGG 0.518016 3_3:-21227674 Msa0446050:CDS
CCTGGTGTTGGTGGTTATGG+TGG 0.520748 3_3:-21227476 Msa0446050:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_3:-21227743 Msa0446050:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_3:-21227830 Msa0446050:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_3:-21227917 Msa0446050:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_3:-21228004 Msa0446050:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_3:-21228091 Msa0446050:CDS
GCTGGAGGTTATGGCGGAGG+TGG 0.526799 3_3:-21228217 Msa0446050:CDS
CAGAAGGGTTTAAGAATCGA+AGG 0.528843 3_3:+21231456 None:intergenic
GATCTGCATGGTCGCCGAGT+TGG 0.531154 3_3:-21228382 Msa0446050:CDS
TATACCCTGTTGCACTTCCA+GGG 0.541487 3_3:+21227285 None:intergenic
GGTAACTCTTCATACGGTGG+TGG 0.542271 3_3:-21228274 Msa0446050:CDS
GTTAACTATGGTAGTGCACC+TGG 0.543191 3_3:-21227494 Msa0446050:CDS
CCTTCTGCAAAATTTCGCTA+GGG 0.543411 3_3:-21231440 Msa0446050:five_prime_UTR
GGTGGGTATGGTAATGCTGC+TGG 0.545529 3_3:-21228256 Msa0446050:CDS
AGTGCCATTCAGGCCTTGGA+TGG 0.546654 3_3:-21229578 Msa0446050:CDS
AGGTCCATCAAAACCACCAC+GGG 0.547372 3_3:+21228336 None:intergenic
CGCGAAACTGGTAGGTCCAA+AGG 0.548206 3_3:-21229641 Msa0446050:CDS
CCACCGTAACCACCAACACC+AGG 0.548591 3_3:+21227662 None:intergenic
CCACCAGCAAAGCTGCTCCC+GGG 0.552776 3_3:+21227245 None:intergenic
CTCACCTCCTACAAACAGCT+TGG 0.553614 3_3:+21230318 None:intergenic
GCAAATTATGGTGCGGCTGT+AGG 0.554874 3_3:-21227629 Msa0446050:CDS
GGTATTGCTCCTGGTGCTGG+TGG 0.555665 3_3:-21227404 Msa0446050:CDS
TATGGTAGTGCACCTGGTGT+TGG 0.559778 3_3:-21227488 Msa0446050:CDS
TACTTACAATACTGTTGAGG+AGG 0.563819 3_3:-21229606 Msa0446050:CDS
TATGGTGCGGCTGTAGGTGG+TGG 0.566297 3_3:-21227623 Msa0446050:CDS
GCTGCTGGAGGTTATGGCGG+AGG 0.566970 3_3:-21228220 Msa0446050:CDS
GGACTTGGATACGGTGAAAG+TGG 0.567518 3_3:-21227206 Msa0446050:CDS
TTCTCCCATAATCAATACCC+TGG 0.572467 3_3:-21227302 Msa0446050:CDS
CCACCATAACCACCAACACC+AGG 0.573676 3_3:+21227476 None:intergenic
GCAAATTATGGTACTGCTGT+AGG 0.575266 3_3:-21227536 Msa0446050:CDS
AGATATGGCCAAGTTCTTGA+CGG 0.577723 3_3:-21229810 Msa0446050:intron
TTTCCATAACCACCAACACC+AGG 0.577846 3_3:+21227818 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_3:+21227905 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_3:+21227992 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_3:+21228079 None:intergenic
TGTTACTTACAATACTGTTG+AGG 0.579889 3_3:-21229609 Msa0446050:CDS
CATTATAGTACTGGTGGTGT+TGG 0.580396 3_3:-21227344 Msa0446050:CDS
GCAGTGGCAGTTCAGCTCCC+GGG 0.581433 3_3:-21227262 Msa0446050:CDS
GAAAGCAATTCTGTTAACTA+CGG 0.582061 3_3:-21227599 Msa0446050:CDS
CTTCCTTACCTGTCCATCCA+AGG 0.582774 3_3:+21229565 None:intergenic
GTATGGCTTGGAAAACAGAT+GGG 0.584601 3_3:+21230365 None:intergenic
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_3:-21227785 Msa0446050:CDS
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_3:-21227872 Msa0446050:CDS
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_3:-21227959 Msa0446050:CDS
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_3:-21228046 Msa0446050:CDS
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_3:-21228133 Msa0446050:CDS
GGTTATGGTAACTCTTCATA+CGG 0.593911 3_3:-21228280 Msa0446050:CDS
AATTATGGTGCGGCTGTAGG+TGG 0.596398 3_3:-21227626 Msa0446050:CDS
AGAACTGGAGGACTTGGATA+CGG 0.599018 3_3:-21227215 Msa0446050:CDS
AGAAGGGTTTAAGAATCGAA+GGG 0.600003 3_3:+21231457 None:intergenic
GGTGGTGGTGGATATTCAGG+TGG 0.605763 3_3:-21228301 Msa0446050:CDS
AACAGTGCCAATTACAGTGG+TGG 0.607861 3_3:-21227449 Msa0446050:CDS
AATACCAAGCTGTTTGTAGG+AGG 0.614431 3_3:-21230322 Msa0446050:intron
TTACCATAACCACCAACACC+AGG 0.615865 3_3:+21227731 None:intergenic
GTTTCCACCATAACCACCAC+TGG 0.622310 3_3:+21228165 None:intergenic
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_3:-21227788 Msa0446050:CDS
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_3:-21227875 Msa0446050:CDS
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_3:-21227962 Msa0446050:CDS
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_3:-21228049 Msa0446050:CDS
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_3:-21228136 Msa0446050:CDS
TTATGGATCGCGAAACTGGT+AGG 0.623605 3_3:-21229649 Msa0446050:CDS
ACTACCAGTGGTGGTTATGG+TGG 0.626441 3_3:-21228169 Msa0446050:CDS
TTATGGGAGAAACCATTGCT+GGG 0.628449 3_3:+21227314 None:intergenic
TGGCAAAATTTACACCAACT+CGG 0.629242 3_3:+21228368 None:intergenic
AGTACCCGAGAAGCACCGTA+TGG 0.630479 3_3:+21230348 None:intergenic
TACAATGATGGAACTACCAG+TGG 0.633369 3_3:-21228181 Msa0446050:CDS
AATGCTGCTGGAGGTTATGG+CGG 0.635356 3_3:-21228223 Msa0446050:CDS
CCTGGTGTTGGTGGTTACGG+TGG 0.637484 3_3:-21227662 Msa0446050:CDS
GATAACCATTATAGTACTGG+TGG 0.641328 3_3:-21227350 Msa0446050:CDS
GTAACTCTTCATACGGTGGT+GGG 0.644863 3_3:-21228273 Msa0446050:CDS
AATGATGGAACTACCAGTGG+TGG 0.655253 3_3:-21228178 Msa0446050:CDS
GAAGGGTTTAAGAATCGAAG+GGG 0.657977 3_3:+21231458 None:intergenic
CCTGTTGCTGGTGTTTACGG+TGG 0.660993 3_3:-21227569 Msa0446050:CDS
GCCAATGAAAGACCCCGTGG+TGG 0.663368 3_3:-21228349 Msa0446050:CDS
AGTGCAACAGGGTATAGCAG+TGG 0.673542 3_3:-21227278 Msa0446050:CDS
GGTGGATATGATAGAACTGG+AGG 0.686015 3_3:-21227227 Msa0446050:CDS
TATGGTAACTCTTCATACGG+TGG 0.686177 3_3:-21228277 Msa0446050:CDS
AAGGTCCATCAAAACCACCA+CGG 0.693888 3_3:+21228335 None:intergenic
TATGGCTTGGAAAACAGATG+GGG 0.700345 3_3:+21230366 None:intergenic
AATACCCTGGAAGTGCAACA+GGG 0.711945 3_3:-21227289 Msa0446050:CDS
TTTGCCAATGAAAGACCCCG+TGG 0.723240 3_3:-21228352 Msa0446050:CDS
TATAGTGGTAATGCTGCTGG+AGG 0.728658 3_3:-21228232 Msa0446050:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_3:-21227798 Msa0446050:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_3:-21227885 Msa0446050:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_3:-21227972 Msa0446050:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_3:-21228059 Msa0446050:CDS
AAACGATGCAAATTATGGTG+CGG 0.748687 3_3:-21228146 Msa0446050:CDS
GGTAACAGTGCCAATTACAG+TGG 0.753278 3_3:-21227452 Msa0446050:CDS
TAACAGTGCAAATTATGGTG+CGG 0.758913 3_3:-21227636 Msa0446050:CDS
GGTCCATCAAAACCACCACG+GGG 0.809353 3_3:+21228337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCGATTTTTTTATTTTATT+AGG - chr3_3:21228032-21228051 Msa0446050:CDS 10.0%
!! TTTCATATATATTGAAAATT+AGG - chr3_3:21228389-21228408 Msa0446050:intron 10.0%
!!! TTCATTCATTTTTTTCTTTT+GGG + chr3_3:21227412-21227431 None:intergenic 15.0%
!!! TTTCATTCATTTTTTTCTTT+TGG + chr3_3:21227413-21227432 None:intergenic 15.0%
!!! TTTGTTTATATTTTCTTTTC+TGG - chr3_3:21227470-21227489 Msa0446050:CDS 15.0%
!!! TTGTTTATATTTTCTTTTCT+GGG - chr3_3:21227471-21227490 Msa0446050:CDS 15.0%
!! ATACTTCATGTTAATTTAAT+TGG - chr3_3:21230165-21230184 Msa0446050:intron 15.0%
!! CATTCATAAATAAATAAGAA+AGG + chr3_3:21230221-21230240 None:intergenic 15.0%
!! ACAAGAAATGAAAAAAAGAT+TGG + chr3_3:21227301-21227320 None:intergenic 20.0%
!! GAACAAATATAACGAAAAAT+GGG + chr3_3:21227852-21227871 None:intergenic 20.0%
!! AGAACAAATATAACGAAAAA+TGG + chr3_3:21227853-21227872 None:intergenic 20.0%
!! CAAAGACAAAATTAAAGTAA+TGG + chr3_3:21227876-21227895 None:intergenic 20.0%
!! ATCATAATTATTACTCTTTC+TGG - chr3_3:21227896-21227915 Msa0446050:CDS 20.0%
!!! TAATAATAACTTTTTCCTTC+AGG - chr3_3:21228000-21228019 Msa0446050:CDS 20.0%
!!! AATAATAACTTTTTCCTTCA+GGG - chr3_3:21228001-21228020 Msa0446050:CDS 20.0%
!!! ATTTTGTTTGTATTTCTTTC+TGG - chr3_3:21228065-21228084 Msa0446050:CDS 20.0%
!! AAATTATTTATCAGTGTCTA+CGG + chr3_3:21228497-21228516 None:intergenic 20.0%
!!! TTTTATAGCAAGGATAATTA+TGG - chr3_3:21228973-21228992 Msa0446050:intron 20.0%
!! TCCACTATGATTAATTATAT+AGG + chr3_3:21229895-21229914 None:intergenic 20.0%
!! GATATTCTCTTTATCTATTA+TGG + chr3_3:21229920-21229939 None:intergenic 20.0%
!!! TGAATGTAATTTTTGTTTTC+AGG - chr3_3:21230235-21230254 Msa0446050:intron 20.0%
! AGAAATGAAAAAAAGATTGG+TGG + chr3_3:21227298-21227317 None:intergenic 25.0%
!!! TTTGGTTTTATTGATGTTTG+TGG - chr3_3:21227506-21227525 Msa0446050:CDS 25.0%
!!! TTGGTTTTATTGATGTTTGT+GGG - chr3_3:21227507-21227526 Msa0446050:CDS 25.0%
! ACGAAAATGAGGAAATAATT+TGG - chr3_3:21227777-21227796 Msa0446050:CDS 25.0%
! AATATAACGAAAAATGGGAA+TGG + chr3_3:21227847-21227866 None:intergenic 25.0%
! CGAAGACAAAATTAAAGTAA+TGG + chr3_3:21227979-21227998 None:intergenic 25.0%
! ATATTGTATTCTGAATGTGA+TGG - chr3_3:21228159-21228178 Msa0446050:CDS 25.0%
! TATTGTATTCTGAATGTGAT+GGG - chr3_3:21228160-21228179 Msa0446050:CDS 25.0%
! AATTATTTATCAGTGTCTAC+GGG + chr3_3:21228496-21228515 None:intergenic 25.0%
! TGCTATGATAAATCCATATT+GGG - chr3_3:21228657-21228676 Msa0446050:intron 25.0%
! TGGGATTCATTATAGTTAAT+CGG + chr3_3:21229282-21229301 None:intergenic 25.0%
! AATGTTCATTGGAATCAATT+GGG + chr3_3:21229301-21229320 None:intergenic 25.0%
! AAAGTTGACAAAAAAAGAAG+TGG + chr3_3:21229345-21229364 None:intergenic 25.0%
! ATAAGATTCGATTCACAATT+TGG - chr3_3:21229476-21229495 Msa0446050:intron 25.0%
! TTAATTATATAGGCAGTACT+GGG + chr3_3:21229885-21229904 None:intergenic 25.0%
! ATTAATTATATAGGCAGTAC+TGG + chr3_3:21229886-21229905 None:intergenic 25.0%
! GCCTATATAATTAATCATAG+TGG - chr3_3:21229891-21229910 Msa0446050:intron 25.0%
! TTATTGTTCCTTCATTTGAT+AGG - chr3_3:21229968-21229987 Msa0446050:intron 25.0%
!!! CTGATAATGACAATTTTAAC+TGG + chr3_3:21230024-21230043 None:intergenic 25.0%
! CAGTTAAAATTGTCATTATC+AGG - chr3_3:21230022-21230041 Msa0446050:intron 25.0%
! AAAAAAGTTTGTAAGATGAC+AGG + chr3_3:21230142-21230161 None:intergenic 25.0%
! TTAATTGGCATTTGTAACAA+CGG - chr3_3:21230180-21230199 Msa0446050:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_3:21230575-21230594 Msa0446050:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_3:21230575-21230594 Msa0446050:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_3:21230575-21230594 Msa0446050:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_3:21230575-21230594 Msa0446050:intron 25.0%
! TATGGTAACAATGTGAATTA+TGG - chr3_3:21230923-21230942 Msa0446050:intron 25.0%
AGCTAAGAACAACAAATTCA+AGG - chr3_3:21227260-21227279 Msa0446050:CDS 30.0%
AATCACTGACACTTCAAAAA+CGG - chr3_3:21227577-21227596 Msa0446050:CDS 30.0%
ATTGAACTCTACGTTATCAA+TGG - chr3_3:21227811-21227830 Msa0446050:CDS 30.0%
!!! CATTTTTTATCCACTCTTTC+TGG + chr3_3:21227936-21227955 None:intergenic 30.0%
!! ATTCTGCTTTTACTGATGTT+TGG - chr3_3:21228099-21228118 Msa0446050:CDS 30.0%
!! TTCTGCTTTTACTGATGTTT+GGG - chr3_3:21228100-21228119 Msa0446050:CDS 30.0%
TTGAAAATTAGGACCTTTGT+TGG - chr3_3:21228400-21228419 Msa0446050:intron 30.0%
TGAAAATTAGGACCTTTGTT+GGG - chr3_3:21228401-21228420 Msa0446050:intron 30.0%
TTGAACGTAACTATATGTGT+TGG - chr3_3:21228533-21228552 Msa0446050:intron 30.0%
ATTCAAATTGAAGACGTGTT+TGG + chr3_3:21228585-21228604 None:intergenic 30.0%
ATTTCTTGTAAAACCACGAT+AGG - chr3_3:21228632-21228651 Msa0446050:intron 30.0%
CTGCTATGATAAATCCATAT+TGG - chr3_3:21228656-21228675 Msa0446050:intron 30.0%
! TGTTTTCTTTTTCCCTTCTA+GGG - chr3_3:21228869-21228888 Msa0446050:intron 30.0%
!!! ATCTCGTTGTTTTTATAGCA+AGG - chr3_3:21228963-21228982 Msa0446050:intron 30.0%
! TGTTACTTACAATACTGTTG+AGG - chr3_3:21229030-21229049 Msa0446050:intron 30.0%
TATACGTACGAGTTGTATAT+CGG - chr3_3:21229171-21229190 Msa0446050:intron 30.0%
! ATGAATCTCTAGTGTGTTTT+TGG - chr3_3:21229221-21229240 Msa0446050:intron 30.0%
GGGATTCATTATAGTTAATC+GGG + chr3_3:21229281-21229300 None:intergenic 30.0%
CAATGTTCATTGGAATCAAT+TGG + chr3_3:21229302-21229321 None:intergenic 30.0%
TAAGCTTACACAATGTTCAT+TGG + chr3_3:21229312-21229331 None:intergenic 30.0%
TTGAGAAACATATCGTGAAT+CGG + chr3_3:21229514-21229533 None:intergenic 30.0%
TACAAATGCTGAAACTACAT+AGG - chr3_3:21229553-21229572 Msa0446050:intron 30.0%
GTAAAAGCTCGACAATTATA+AGG + chr3_3:21229690-21229709 None:intergenic 30.0%
TGCTACTGTCAATATTAGTT+TGG - chr3_3:21229735-21229754 Msa0446050:intron 30.0%
! GCTACTGTCAATATTAGTTT+GGG - chr3_3:21229736-21229755 Msa0446050:intron 30.0%
TATGGAAACACTTACAATGA+TGG - chr3_3:21230446-21230465 Msa0446050:CDS 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_3:21230580-21230599 Msa0446050:intron 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_3:21230580-21230599 Msa0446050:intron 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_3:21230580-21230599 Msa0446050:intron 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_3:21230580-21230599 Msa0446050:intron 30.0%
GAAAGCAATTCTGTTAACTA+CGG - chr3_3:21231040-21231059 Msa0446050:intron 30.0%
GAAAGCAATTCTGTTAACTA+TGG - chr3_3:21231040-21231059 Msa0446050:intron 30.0%
GAAAGCAATTCTGTTAACTA+TGG - chr3_3:21231040-21231059 Msa0446050:intron 30.0%
AGTGATAACCATTATAGTAC+TGG - chr3_3:21231286-21231305 Msa0446050:intron 30.0%
!!! AAGTTGATGCTTTTGCTAAA+CGG - chr3_3:21231485-21231504 Msa0446050:five_prime_UTR 30.0%
AGAAGGGTTTAAGAATCGAA+GGG + chr3_3:21227185-21227204 None:intergenic 35.0%
! ATTTTCTTTTCTGGGTTGTG+CGG - chr3_3:21227479-21227498 Msa0446050:CDS 35.0%
!!! AGCTGAATGAGTTTTTTCGT+TGG - chr3_3:21227734-21227753 Msa0446050:CDS 35.0%
TGGATCAAGATTCTTTCCAT+TGG - chr3_3:21227754-21227773 Msa0446050:CDS 35.0%
! ATTTCCTCATTTTCGTCCAA+TGG + chr3_3:21227773-21227792 None:intergenic 35.0%
!!! ACTCTTTCTGGTTTTGTTTG+GGG + chr3_3:21227924-21227943 None:intergenic 35.0%
!!! CACTCTTTCTGGTTTTGTTT+GGG + chr3_3:21227925-21227944 None:intergenic 35.0%
GTAGAGTTGGGAGTTTATTA+AGG - chr3_3:21228204-21228223 Msa0446050:CDS 35.0%
GAAAATTAGGACCTTTGTTG+GGG - chr3_3:21228402-21228421 Msa0446050:intron 35.0%
AAAATTAGGACCTTTGTTGG+GGG - chr3_3:21228403-21228422 Msa0446050:intron 35.0%
ACGTCTTCAATTTGAATTGC+CGG - chr3_3:21228588-21228607 Msa0446050:intron 35.0%
ATGCCAAGATAGGATCTTTA+TGG - chr3_3:21228704-21228723 Msa0446050:intron 35.0%
CAACCATAAAGATCCTATCT+TGG + chr3_3:21228710-21228729 None:intergenic 35.0%
ATGCAAATTCATGTGTTTGC+AGG - chr3_3:21228760-21228779 Msa0446050:intron 35.0%
!!! AGCGATGCTTTTTCAAGATA+TGG - chr3_3:21228814-21228833 Msa0446050:intron 35.0%
! CTGTTTTCTTTTTCCCTTCT+AGG - chr3_3:21228868-21228887 Msa0446050:intron 35.0%
! GTTTTCTTTTTCCCTTCTAG+GGG - chr3_3:21228870-21228889 Msa0446050:intron 35.0%
! TTTTCTTTTTCCCTTCTAGG+GGG - chr3_3:21228871-21228890 Msa0446050:intron 35.0%
ATAATTATGGATCGCGAAAC+TGG - chr3_3:21228986-21229005 Msa0446050:intron 35.0%
AGTAACAAAGCCAAATCCTT+TGG + chr3_3:21229017-21229036 None:intergenic 35.0%
TACTTACAATACTGTTGAGG+AGG - chr3_3:21229033-21229052 Msa0446050:intron 35.0%
TCAGCATTTGTATGTGTACA+TGG + chr3_3:21229545-21229564 None:intergenic 35.0%
AGCTCACAAACTTCATTCAA+TGG + chr3_3:21229583-21229602 None:intergenic 35.0%
CTCGACAATTATAAGGACAA+GGG + chr3_3:21229683-21229702 None:intergenic 35.0%
ACTTATGTGTCTAATCATCC+AGG - chr3_3:21229708-21229727 Msa0446050:intron 35.0%
!!! AATTTTAACTGGAGACCACA+TGG + chr3_3:21230013-21230032 None:intergenic 35.0%
CATCACAGTTAAGTTACTGA+AGG + chr3_3:21230087-21230106 None:intergenic 35.0%
!!! TTTTGTTTTCAGGATCTGCA+TGG - chr3_3:21230245-21230264 Msa0446050:intron 35.0%
TGGCAAAATTTACACCAACT+CGG + chr3_3:21230274-21230293 None:intergenic 35.0%
GGTTATGGTAACTCTTCATA+CGG - chr3_3:21230359-21230378 Msa0446050:CDS 35.0%
AAACGATGCAAATTATGGTG+CGG - chr3_3:21230493-21230512 Msa0446050:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_3:21230530-21230549 Msa0446050:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_3:21230530-21230549 Msa0446050:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_3:21230530-21230549 Msa0446050:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_3:21230530-21230549 Msa0446050:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_3:21230530-21230549 Msa0446050:intron 35.0%
TAACAGTGCAAATTATGGTG+CGG - chr3_3:21231003-21231022 Msa0446050:intron 35.0%
GGTGCTAACAATGCAAATTA+TGG - chr3_3:21231091-21231110 Msa0446050:intron 35.0%
! GATAACCATTATAGTACTGG+TGG - chr3_3:21231289-21231308 Msa0446050:intron 35.0%
!! ACTTCCAGGGTATTGATTAT+GGG + chr3_3:21231344-21231363 None:intergenic 35.0%
!! AGTTGATGCTTTTGCTAAAC+GGG - chr3_3:21231486-21231505 Msa0446050:five_prime_UTR 35.0%
GAAGGGTTTAAGAATCGAAG+GGG + chr3_3:21227184-21227203 None:intergenic 40.0%
CAGAAGGGTTTAAGAATCGA+AGG + chr3_3:21227186-21227205 None:intergenic 40.0%
! CCTAGCGAAATTTTGCAGAA+GGG + chr3_3:21227201-21227220 None:intergenic 40.0%
CCTTCTGCAAAATTTCGCTA+GGG - chr3_3:21227199-21227218 Msa0446050:CDS 40.0%
CTTTCCATTGGACGAAAATG+AGG - chr3_3:21227766-21227785 Msa0446050:CDS 40.0%
!!! CCACTCTTTCTGGTTTTGTT+TGG + chr3_3:21227926-21227945 None:intergenic 40.0%
CCAAACAAAACCAGAAAGAG+TGG - chr3_3:21227923-21227942 Msa0446050:CDS 40.0%
ATCGAACATTTCATCCCTGA+AGG + chr3_3:21228018-21228037 None:intergenic 40.0%
! TGCTTTTACTGATGTTTGGG+CGG - chr3_3:21228103-21228122 Msa0446050:CDS 40.0%
!! TTCTGAATGTGATGGGTTTC+AGG - chr3_3:21228167-21228186 Msa0446050:CDS 40.0%
!! AATGTGATGGGTTTCAGGAA+TGG - chr3_3:21228172-21228191 Msa0446050:CDS 40.0%
GTTTCAGGAATGGCTTTCTT+TGG - chr3_3:21228182-21228201 Msa0446050:CDS 40.0%
ATGGCTTTCTTTGGTAGAGT+TGG - chr3_3:21228191-21228210 Msa0446050:CDS 40.0%
TGGCTTTCTTTGGTAGAGTT+GGG - chr3_3:21228192-21228211 Msa0446050:CDS 40.0%
! TATGGCTTGGAAAACAGATG+GGG + chr3_3:21228276-21228295 None:intergenic 40.0%
! GTATGGCTTGGAAAACAGAT+GGG + chr3_3:21228277-21228296 None:intergenic 40.0%
! CATCTGTTTTCCAAGCCATA+CGG - chr3_3:21228276-21228295 Msa0446050:CDS 40.0%
CCTACAAACAGCTTGGTATT+GGG + chr3_3:21228317-21228336 None:intergenic 40.0%
TCCTACAAACAGCTTGGTAT+TGG + chr3_3:21228318-21228337 None:intergenic 40.0%
AATACCAAGCTGTTTGTAGG+AGG - chr3_3:21228317-21228336 Msa0446050:CDS 40.0%
!! TTGAAGACGTGTTTGGTGTT+TGG + chr3_3:21228578-21228597 None:intergenic 40.0%
TTATCATAGCAGACCTATCG+TGG + chr3_3:21228648-21228667 None:intergenic 40.0%
! CATGACAGGGTTTAAAACAG+GGG + chr3_3:21228687-21228706 None:intergenic 40.0%
! GCATGACAGGGTTTAAAACA+GGG + chr3_3:21228688-21228707 None:intergenic 40.0%
AGATATGGCCAAGTTCTTGA+CGG - chr3_3:21228829-21228848 Msa0446050:intron 40.0%
!! TTTCTTTTTCCCTTCTAGGG+GGG - chr3_3:21228872-21228891 Msa0446050:intron 40.0%
GCTCGACAATTATAAGGACA+AGG + chr3_3:21229684-21229703 None:intergenic 40.0%
TATTGACAGTAGCAGTAACC+TGG + chr3_3:21229729-21229748 None:intergenic 40.0%
AATAACAGCATGCAACGACA+AGG + chr3_3:21229953-21229972 None:intergenic 40.0%
CAGATGAGCCTATCAAATGA+AGG + chr3_3:21229979-21229998 None:intergenic 40.0%
TCTGTGAGAAGATATCCATG+TGG - chr3_3:21229995-21230014 Msa0446050:intron 40.0%
TATGGTAACTCTTCATACGG+TGG - chr3_3:21230362-21230381 Msa0446050:CDS 40.0%
! TACAATGATGGAACTACCAG+TGG - chr3_3:21230458-21230477 Msa0446050:intron 40.0%
GGTGGAAACGATGCAAATTA+TGG - chr3_3:21230488-21230507 Msa0446050:intron 40.0%
GGTGGTAACAGTGCAAATTA+TGG - chr3_3:21230998-21231017 Msa0446050:intron 40.0%
GCAAATTATGGTACTGCTGT+AGG - chr3_3:21231103-21231122 Msa0446050:intron 40.0%
GTTAACTATGGTATTGCTCC+TGG - chr3_3:21231226-21231245 Msa0446050:intron 40.0%
CAACACCACCAGTACTATAA+TGG + chr3_3:21231297-21231316 None:intergenic 40.0%
!! CATTATAGTACTGGTGGTGT+TGG - chr3_3:21231295-21231314 Msa0446050:intron 40.0%
TTATGGGAGAAACCATTGCT+GGG + chr3_3:21231328-21231347 None:intergenic 40.0%
ATTATGGGAGAAACCATTGC+TGG + chr3_3:21231329-21231348 None:intergenic 40.0%
TTCTCCCATAATCAATACCC+TGG - chr3_3:21231337-21231356 Msa0446050:intron 40.0%
!! CACTTCCAGGGTATTGATTA+TGG + chr3_3:21231345-21231364 None:intergenic 40.0%
TATGATAGAACTGGAGGACT+TGG - chr3_3:21231418-21231437 Msa0446050:five_prime_UTR 40.0%
CCCTTCTGCAAAATTTCGCT+AGG - chr3_3:21227198-21227217 Msa0446050:CDS 45.0%
! CCCTAGCGAAATTTTGCAGA+AGG + chr3_3:21227202-21227221 None:intergenic 45.0%
TCTGGGTTGTGCGGAAAATT+TGG - chr3_3:21227488-21227507 Msa0446050:CDS 45.0%
! GCTTTTACTGATGTTTGGGC+GGG - chr3_3:21228104-21228123 Msa0446050:CDS 45.0%
! CGTATGGCTTGGAAAACAGA+TGG + chr3_3:21228278-21228297 None:intergenic 45.0%
CCCAATACCAAGCTGTTTGT+AGG - chr3_3:21228314-21228333 Msa0446050:CDS 45.0%
GCAACACATTCACCAGACAT+TGG - chr3_3:21228464-21228483 Msa0446050:intron 45.0%
ACTACACAGCTATGTAGCAC+CGG + chr3_3:21228610-21228629 None:intergenic 45.0%
AAACAGGGGCAAACCCAATA+TGG + chr3_3:21228673-21228692 None:intergenic 45.0%
! GGCATGACAGGGTTTAAAAC+AGG + chr3_3:21228689-21228708 None:intergenic 45.0%
AAACCCTGTCATGCCAAGAT+AGG - chr3_3:21228694-21228713 Msa0446050:intron 45.0%
GATCCTATCTTGGCATGACA+GGG + chr3_3:21228700-21228719 None:intergenic 45.0%
AGATCCTATCTTGGCATGAC+AGG + chr3_3:21228701-21228720 None:intergenic 45.0%
ACAACTCACCGTCAAGAACT+TGG + chr3_3:21228840-21228859 None:intergenic 45.0%
TTATGGATCGCGAAACTGGT+AGG - chr3_3:21228990-21229009 Msa0446050:intron 45.0%
ACTGGTAGGTCCAAAGGATT+TGG - chr3_3:21229004-21229023 Msa0446050:intron 45.0%
AAGGTCCATCAAAACCACCA+CGG + chr3_3:21230307-21230326 None:intergenic 45.0%
!!! GGTGGTTTTGATGGACCTTA+TGG - chr3_3:21230308-21230327 Msa0446050:intron 45.0%
!! GGTTTTGATGGACCTTATGG+TGG - chr3_3:21230311-21230330 Msa0446050:intron 45.0%
! TTTGATGGACCTTATGGTGG+TGG - chr3_3:21230314-21230333 Msa0446050:intron 45.0%
GGTGGATATTCAGGTGGTTA+TGG - chr3_3:21230344-21230363 Msa0446050:CDS 45.0%
GTAACTCTTCATACGGTGGT+GGG - chr3_3:21230366-21230385 Msa0446050:CDS 45.0%
! TATAGTGGTAATGCTGCTGG+AGG - chr3_3:21230407-21230426 Msa0446050:CDS 45.0%
! AATGATGGAACTACCAGTGG+TGG - chr3_3:21230461-21230480 Msa0446050:intron 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_3:21230542-21230561 Msa0446050:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_3:21230563-21230582 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_3:21230542-21230561 Msa0446050:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_3:21230563-21230582 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_3:21230542-21230561 Msa0446050:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_3:21230563-21230582 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_3:21230542-21230561 Msa0446050:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_3:21230563-21230582 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_3:21230542-21230561 Msa0446050:intron 45.0%
TTACCATAACCACCAACACC+AGG + chr3_3:21230911-21230930 None:intergenic 45.0%
GCTGCTGATACTGCTAACTA+TGG - chr3_3:21230947-21230966 Msa0446050:intron 45.0%
! GTTAACTATGGTAGTGCACC+TGG - chr3_3:21231145-21231164 Msa0446050:intron 45.0%
GGTAACAGTGCCAATTACAG+TGG - chr3_3:21231187-21231206 Msa0446050:intron 45.0%
AACAGTGCCAATTACAGTGG+TGG - chr3_3:21231190-21231209 Msa0446050:intron 45.0%
GCTTTCTCCACCACTGTAAT+TGG + chr3_3:21231200-21231219 None:intergenic 45.0%
!! TATAGTACTGGTGGTGTTGG+TGG - chr3_3:21231298-21231317 Msa0446050:intron 45.0%
!! ATAGTACTGGTGGTGTTGGT+GGG - chr3_3:21231299-21231318 Msa0446050:intron 45.0%
! AATACCCTGGAAGTGCAACA+GGG - chr3_3:21231350-21231369 Msa0446050:intron 45.0%
TATACCCTGTTGCACTTCCA+GGG + chr3_3:21231357-21231376 None:intergenic 45.0%
! GCTGGTGGATATGATAGAAC+TGG - chr3_3:21231409-21231428 Msa0446050:five_prime_UTR 45.0%
GGTGGATATGATAGAACTGG+AGG - chr3_3:21231412-21231431 Msa0446050:five_prime_UTR 45.0%
AGAACTGGAGGACTTGGATA+CGG - chr3_3:21231424-21231443 Msa0446050:five_prime_UTR 45.0%
!! AAAAAAATGAATTAATTAAA+TGG - chr3_3:21227615-21227634 Msa0446050:CDS 5.0%
!! TTAAATAATTAATCATTATA+TGG - chr3_3:21229832-21229851 Msa0446050:CDS 5.0%
TCACATGTGTTGTGTCGTGC+CGG - chr3_3:21227640-21227659 Msa0446050:CDS 50.0%
! ACGCCTTTGATCAGAGGTGT+AGG - chr3_3:21227672-21227691 Msa0446050:CDS 50.0%
GCACCTACACCTCTGATCAA+AGG + chr3_3:21227678-21227697 None:intergenic 50.0%
CTCACCTCCTACAAACAGCT+TGG + chr3_3:21228324-21228343 None:intergenic 50.0%
ACTGTGAGAACCCCCAACAA+AGG + chr3_3:21228416-21228435 None:intergenic 50.0%
GTCTGGTGAATGTGTTGCGT+CGG + chr3_3:21228462-21228481 None:intergenic 50.0%
!! TACGGGTTAGTGCCAATGTC+TGG + chr3_3:21228479-21228498 None:intergenic 50.0%
CAACTGAATCCCCCCTAGAA+GGG + chr3_3:21228884-21228903 None:intergenic 50.0%
TCAACTGAATCCCCCCTAGA+AGG + chr3_3:21228885-21228904 None:intergenic 50.0%
! ATCAAGTGCCATTCAGGCCT+TGG - chr3_3:21229057-21229076 Msa0446050:intron 50.0%
CTTCCTTACCTGTCCATCCA+AGG + chr3_3:21229077-21229096 None:intergenic 50.0%
GCATGCAACGACAAGGATGA+TGG + chr3_3:21229946-21229965 None:intergenic 50.0%
TTTGCCAATGAAAGACCCCG+TGG - chr3_3:21230287-21230306 Msa0446050:intron 50.0%
AGGTCCATCAAAACCACCAC+GGG + chr3_3:21230306-21230325 None:intergenic 50.0%
GGTAACTCTTCATACGGTGG+TGG - chr3_3:21230365-21230384 Msa0446050:CDS 50.0%
!! TCTTCATACGGTGGTGGGTA+TGG - chr3_3:21230371-21230390 Msa0446050:CDS 50.0%
! GGTAATGCTGCTGGCTATAG+TGG - chr3_3:21230392-21230411 Msa0446050:CDS 50.0%
! GGCTATAGTGGTAATGCTGC+TGG - chr3_3:21230404-21230423 Msa0446050:CDS 50.0%
GGTAATGCTGCTGGAGGTTA+TGG - chr3_3:21230413-21230432 Msa0446050:CDS 50.0%
AATGCTGCTGGAGGTTATGG+CGG - chr3_3:21230416-21230435 Msa0446050:CDS 50.0%
GGAACTACCAGTGGTGGTTA+TGG - chr3_3:21230467-21230486 Msa0446050:intron 50.0%
ACTACCAGTGGTGGTTATGG+TGG - chr3_3:21230470-21230489 Msa0446050:intron 50.0%
GTTTCCACCATAACCACCAC+TGG + chr3_3:21230477-21230496 None:intergenic 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_3:21230500-21230519 Msa0446050:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_3:21230503-21230522 Msa0446050:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_3:21230548-21230567 Msa0446050:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_3:21230500-21230519 Msa0446050:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_3:21230503-21230522 Msa0446050:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_3:21230548-21230567 Msa0446050:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_3:21230500-21230519 Msa0446050:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_3:21230503-21230522 Msa0446050:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_3:21230548-21230567 Msa0446050:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_3:21230500-21230519 Msa0446050:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_3:21230503-21230522 Msa0446050:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_3:21230548-21230567 Msa0446050:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_3:21230500-21230519 Msa0446050:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_3:21230503-21230522 Msa0446050:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_3:21230548-21230567 Msa0446050:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_3:21230500-21230519 Msa0446050:intron 50.0%
AATTATGGTGCGGCTGTAGG+TGG - chr3_3:21230503-21230522 Msa0446050:intron 50.0%
GCTCCTGTTGCTGGTGTTTA+CGG - chr3_3:21231067-21231086 Msa0446050:intron 50.0%
! TATGGTAGTGCACCTGGTGT+TGG - chr3_3:21231151-21231170 Msa0446050:intron 50.0%
TATGGTATTGCTCCTGGTGC+TGG - chr3_3:21231232-21231251 Msa0446050:intron 50.0%
!! TATGGTGCTGCTGCTGGATT+TGG - chr3_3:21231259-21231278 Msa0446050:intron 50.0%
!! TAGTACTGGTGGTGTTGGTG+GGG - chr3_3:21231300-21231319 Msa0446050:intron 50.0%
! CAATACCCTGGAAGTGCAAC+AGG - chr3_3:21231349-21231368 Msa0446050:intron 50.0%
CTATACCCTGTTGCACTTCC+AGG + chr3_3:21231358-21231377 None:intergenic 50.0%
AGTGCAACAGGGTATAGCAG+TGG - chr3_3:21231361-21231380 Msa0446050:intron 50.0%
GGACTTGGATACGGTGAAAG+TGG - chr3_3:21231433-21231452 Msa0446050:five_prime_UTR 50.0%
! TCAAAGGCGTGTCCAGTGTC+CGG + chr3_3:21227662-21227681 None:intergenic 55.0%
CTGGACACGCCTTTGATCAG+AGG - chr3_3:21227666-21227685 Msa0446050:CDS 55.0%
! CAGAGGTGTAGGTGCTGTAG+AGG - chr3_3:21227683-21227702 Msa0446050:CDS 55.0%
CCAAGCCATACGGTGCTTCT+CGG - chr3_3:21228286-21228305 Msa0446050:CDS 55.0%
CAAGCCATACGGTGCTTCTC+GGG - chr3_3:21228287-21228306 Msa0446050:CDS 55.0%
!! AGTACCCGAGAAGCACCGTA+TGG + chr3_3:21228294-21228313 None:intergenic 55.0%
CTAGGGGGGATTCAGTTGAG+AGG - chr3_3:21228886-21228905 Msa0446050:intron 55.0%
CGCGAAACTGGTAGGTCCAA+AGG - chr3_3:21228998-21229017 Msa0446050:intron 55.0%
!! GGAGGCATCAAGTGCCATTC+AGG - chr3_3:21229051-21229070 Msa0446050:intron 55.0%
! AGTGCCATTCAGGCCTTGGA+TGG - chr3_3:21229061-21229080 Msa0446050:intron 55.0%
CTGTCCATCCAAGGCCTGAA+TGG + chr3_3:21229068-21229087 None:intergenic 55.0%
CATTCAGGCCTTGGATGGAC+AGG - chr3_3:21229066-21229085 Msa0446050:intron 55.0%
AGGCCTTGGATGGACAGGTA+AGG - chr3_3:21229071-21229090 Msa0446050:intron 55.0%
ACCACCACGGGGTCTTTCAT+TGG + chr3_3:21230294-21230313 None:intergenic 55.0%
!!! AGACCCCGTGGTGGTTTTGA+TGG - chr3_3:21230299-21230318 Msa0446050:intron 55.0%
GGTCCATCAAAACCACCACG+GGG + chr3_3:21230305-21230324 None:intergenic 55.0%
!! GATGGACCTTATGGTGGTGG+AGG - chr3_3:21230317-21230336 Msa0446050:intron 55.0%
!! GGAGGTGGTGGTGGATATTC+AGG - chr3_3:21230335-21230354 Msa0446050:CDS 55.0%
!! GGTGGTGGTGGATATTCAGG+TGG - chr3_3:21230338-21230357 Msa0446050:CDS 55.0%
! GGTGGGTATGGTAATGCTGC+TGG - chr3_3:21230383-21230402 Msa0446050:CDS 55.0%
! GGTTATGGCGGAGGTGGTTA+TGG - chr3_3:21230428-21230447 Msa0446050:CDS 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_3:21230557-21230576 Msa0446050:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_3:21230557-21230576 Msa0446050:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_3:21230557-21230576 Msa0446050:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_3:21230557-21230576 Msa0446050:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_3:21230557-21230576 Msa0446050:intron 55.0%
GCTAACTATGGCAGTGCTCC+TGG - chr3_3:21230959-21230978 Msa0446050:intron 55.0%
TATGGCAGTGCTCCTGGTGT+TGG - chr3_3:21230965-21230984 Msa0446050:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+CGG - chr3_3:21230557-21230576 Msa0446050:intron 55.0%
TACGGTAGTGCTCCTGTTGC+TGG - chr3_3:21231058-21231077 Msa0446050:intron 55.0%
CCACCGTAAACACCAGCAAC+AGG + chr3_3:21231073-21231092 None:intergenic 55.0%
CCTGTTGCTGGTGTTTACGG+TGG - chr3_3:21231070-21231089 Msa0446050:intron 55.0%
!! GCACCTGGTGTTGGTGGTTA+TGG - chr3_3:21231160-21231179 Msa0446050:intron 55.0%
CCACCATAACCACCAACACC+AGG + chr3_3:21231166-21231185 None:intergenic 55.0%
!! CCTGGTGTTGGTGGTTATGG+TGG - chr3_3:21230560-21230579 Msa0446050:intron 55.0%
!! GGTGTTGGTGGTTATGGTGG+TGG - chr3_3:21231166-21231185 Msa0446050:intron 55.0%
!! AGTACTGGTGGTGTTGGTGG+GGG - chr3_3:21231301-21231320 Msa0446050:intron 55.0%
TGTTGTGTCGTGCCGGACAC+TGG - chr3_3:21227647-21227666 Msa0446050:CDS 60.0%
!! CCGAGAAGCACCGTATGGCT+TGG + chr3_3:21228289-21228308 None:intergenic 60.0%
GATCTGCATGGTCGCCGAGT+TGG - chr3_3:21230257-21230276 Msa0446050:intron 60.0%
GCCAATGAAAGACCCCGTGG+TGG - chr3_3:21230290-21230309 Msa0446050:intron 60.0%
!! GGACCTTATGGTGGTGGAGG+TGG - chr3_3:21230320-21230339 Msa0446050:intron 60.0%
CCACCACCTCCACCACCATA+AGG + chr3_3:21230326-21230345 None:intergenic 60.0%
!! CCTTATGGTGGTGGAGGTGG+TGG - chr3_3:21230323-21230342 Msa0446050:CDS 60.0%
!! TATGGTGGTGGAGGTGGTGG+TGG - chr3_3:21230326-21230345 Msa0446050:CDS 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_3:21230551-21230570 Msa0446050:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_3:21230551-21230570 Msa0446050:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_3:21230551-21230570 Msa0446050:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_3:21230551-21230570 Msa0446050:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_3:21230551-21230570 Msa0446050:intron 60.0%
CCACCGTAACCACCAACACC+AGG + chr3_3:21230980-21230999 None:intergenic 60.0%
!! CCTGGTGTTGGTGGTTACGG+TGG - chr3_3:21230977-21230996 Msa0446050:intron 60.0%
!! GGTGTTGGTGGTTACGGTGG+TGG - chr3_3:21230980-21230999 Msa0446050:intron 60.0%
TATGGTGCGGCTGTAGGTGG+TGG - chr3_3:21231016-21231035 Msa0446050:intron 60.0%
! GGTAGTGCACCTGGTGTTGG+TGG - chr3_3:21231154-21231173 Msa0446050:intron 60.0%
! GGTATTGCTCCTGGTGCTGG+TGG - chr3_3:21231235-21231254 Msa0446050:intron 60.0%
!! GCTCCTGGTGCTGGTGGTTA+TGG - chr3_3:21231241-21231260 Msa0446050:intron 60.0%
GCACCATAACCACCAGCACC+AGG + chr3_3:21231247-21231266 None:intergenic 60.0%
!! GGTGGTTATGGTGCTGCTGC+TGG - chr3_3:21231253-21231272 Msa0446050:intron 60.0%
AGCAGTGGCAGTTCAGCTCC+CGG - chr3_3:21231376-21231395 Msa0446050:intron 60.0%
TCCACCAGCAAAGCTGCTCC+CGG + chr3_3:21231398-21231417 None:intergenic 60.0%
GCTGCTGGAGGTTATGGCGG+AGG - chr3_3:21230419-21230438 Msa0446050:CDS 65.0%
! GCTGGAGGTTATGGCGGAGG+TGG - chr3_3:21230422-21230441 Msa0446050:CDS 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_3:21230506-21230525 Msa0446050:intron 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_3:21230506-21230525 Msa0446050:intron 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_3:21230506-21230525 Msa0446050:intron 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_3:21230506-21230525 Msa0446050:intron 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_3:21230506-21230525 Msa0446050:intron 65.0%
! GGCAGTGCTCCTGGTGTTGG+TGG - chr3_3:21230968-21230987 Msa0446050:intron 65.0%
! GTTGGTGGGGGTCCCAGCAA+TGG - chr3_3:21231313-21231332 Msa0446050:intron 65.0%
GCAGTGGCAGTTCAGCTCCC+GGG - chr3_3:21231377-21231396 Msa0446050:intron 65.0%
CCACCAGCAAAGCTGCTCCC+GGG + chr3_3:21231397-21231416 None:intergenic 65.0%
GCTCCCGGGAGCAGCTTTGC+TGG - chr3_3:21231391-21231410 Msa0446050:five_prime_UTR 70.0%
CCCGGGAGCAGCTTTGCTGG+TGG - chr3_3:21231394-21231413 Msa0446050:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 21227148 21231513 21227148 ID=Msa0446050;Name=Msa0446050
chr3_3 mRNA 21227148 21231513 21227148 ID=Msa0446050-mRNA-1;Parent=Msa0446050;Name=Msa0446050-mRNA-1;_AED=0.08;_eAED=0.14;_QI=136|1|0.8|1|0.75|0.8|5|0|526
chr3_3 exon 21227148 21228404 21227148 ID=Msa0446050-mRNA-1:exon:4457;Parent=Msa0446050-mRNA-1
chr3_3 exon 21229574 21229680 21229574 ID=Msa0446050-mRNA-1:exon:4456;Parent=Msa0446050-mRNA-1
chr3_3 exon 21229811 21229879 21229811 ID=Msa0446050-mRNA-1:exon:4455;Parent=Msa0446050-mRNA-1
chr3_3 exon 21230323 21230472 21230323 ID=Msa0446050-mRNA-1:exon:4454;Parent=Msa0446050-mRNA-1
chr3_3 exon 21231380 21231513 21231380 ID=Msa0446050-mRNA-1:exon:4453;Parent=Msa0446050-mRNA-1
chr3_3 five_prime_UTR 21231380 21231513 21231380 ID=Msa0446050-mRNA-1:five_prime_utr;Parent=Msa0446050-mRNA-1
chr3_3 five_prime_UTR 21230471 21230472 21230471 ID=Msa0446050-mRNA-1:five_prime_utr;Parent=Msa0446050-mRNA-1
chr3_3 CDS 21230323 21230470 21230323 ID=Msa0446050-mRNA-1:cds;Parent=Msa0446050-mRNA-1
chr3_3 CDS 21229811 21229879 21229811 ID=Msa0446050-mRNA-1:cds;Parent=Msa0446050-mRNA-1
chr3_3 CDS 21229574 21229680 21229574 ID=Msa0446050-mRNA-1:cds;Parent=Msa0446050-mRNA-1
chr3_3 CDS 21227148 21228404 21227148 ID=Msa0446050-mRNA-1:cds;Parent=Msa0446050-mRNA-1
Gene Sequence

>Msa0446050

ATGGCTTTCTTTGGTAGAGTTGGGAGTTTATTAAGGAATGCAGCAAATACGAAGATCACTTCTGAGTTGAAGTTACGTTCTTCCCCATCTGTTTTCCAAGCCATACGGTGCTTCTCGGGTACTCCCAATACCAAGCTGTTTGTAGGAGGTATTTCGTATGATACTGATGAACAAAGTTTGAGCGATGCTTTTTCAAGATATGGCCAAGTTCTTGACGCAAGGATAATTATGGATCGCGAAACTGGTAGGTCCAAAGGATTTGGCTTTGTTACTTACAATACTGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGACAGGATCTGCATGGTCGCCGAGTTGGTGTAAATTTTGCCAATGAAAGACCCCGTGGTGGTTTTGATGGACCTTATGGTGGTGGAGGTGGTGGTGGATATTCAGGTGGTTATGGTAACTCTTCATACGGTGGTGGGTATGGTAATGCTGCTGGCTATAGTGGTAATGCTGCTGGAGGTTATGGCGGAGGTGGTTATGGAAACACTTACAATGATGGAACTACCAGTGGTGGTTATGGTGGAAACGATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGTAACAATGTGAATTATGGTGCTGCTGATACTGCTAACTATGGCAGTGCTCCTGGTGTTGGTGGTTACGGTGGTGGTAACAGTGCAAATTATGGTGCGGCTGTAGGTGGTGGAGAAAGCAATTCTGTTAACTACGGTAGTGCTCCTGTTGCTGGTGTTTACGGTGGTGCTAACAATGCAAATTATGGTACTGCTGTAGGTGCTAGAGAAAGCAATTCTGTTAACTATGGTAGTGCACCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCCAATTACAGTGGTGGAGAAAGCAATTCTGTTAACTATGGTATTGCTCCTGGTGCTGGTGGTTATGGTGCTGCTGCTGGATTTGGCAAGAGTGATAACCATTATAGTACTGGTGGTGTTGGTGGGGGTCCCAGCAATGGTTTCTCCCATAATCAATACCCTGGAAGTGCAACAGGGTATAGCAGTGGCAGTTCAGCTCCCGGGAGCAGCTTTGCTGGTGGATATGATAGAACTGGAGGACTTGGATACGGTGAAAGTGGTCAAGAAGATTGCAAGAACGATGATCATGAAGTTGATGCTTTTGCTAAACGGGCTTGA
Protein sequence

>Msa0446050

MAFFGRVGSLLRNAANTKITSELKLRSSPSVFQAIRCFSGTPNTKLFVGGISYDTDEQSLSDAFSRYGQVLDARIIMDRETGRSKGFGFVTYNTVEEASSAIQALDGQDLHGRRVGVNFANERPRGGFDGPYGGGGGGGYSGGYGNSSYGGGYGNAAGYSGNAAGGYGGGGYGNTYNDGTTSGGYGGNDANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNVNYGAADTANYGSAPGVGGYGGGNSANYGAAVGGGESNSVNYGSAPVAGVYGGANNANYGTAVGARESNSVNYGSAPGVGGYGGGNSANYSGGESNSVNYGIAPGAGGYGAAAGFGKSDNHYSTGGVGGGPSNGFSHNQYPGSATGYSSGSSAPGSSFAGGYDRTGGLGYGESGQEDCKNDDHEVDAFAKRA*