AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431270 MtrunA17_Chr3g0136281 96.507 229 6 1 8 234 2 230 5.23e-161 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431270 AT2G26340.1 55.856 222 89 5 22 234 32 253 2.66e-69 213
Msa0431270 AT2G26340.2 55.189 212 84 5 31 234 42 250 1.34e-64 202

Find 78 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTTCCATGTTGTTTA+AGG 0.063769 3_2:+83340139 Msa0431270:three_prime_UTR
TAGAGAAACATATTAACTTT+TGG 0.282146 3_2:+83340077 Msa0431270:three_prime_UTR
GAGATCGGCAGAGGGAAAAT+TGG 0.292643 3_2:-83338353 None:intergenic
ACAGTTCCAGATCAAGGATT+TGG 0.307790 3_2:+83337927 Msa0431270:CDS
TTCCATGTTGTTTAAGGACT+TGG 0.331753 3_2:+83340145 Msa0431270:three_prime_UTR
TCTCCGTTTCCATGTCTTCC+CGG 0.345652 3_2:-83339781 None:intergenic
ATCACCTGTCCAGAGCAATA+AGG 0.367512 3_2:-83339205 None:intergenic
TGCCGATCTCTACTTCGCTC+TGG 0.368041 3_2:+83338366 Msa0431270:CDS
AGATCGGCAGAGGGAAAATT+GGG 0.369482 3_2:-83338352 None:intergenic
TAAGAGTATTGTGTGGATAA+TGG 0.386551 3_2:+83336239 Msa0431270:exon
TACTGCTGAAGGAAGCATTA+TGG 0.402890 3_2:+83336557 Msa0431270:CDS
CAGTTCCAGATCAAGGATTT+GGG 0.422160 3_2:+83337928 Msa0431270:CDS
TCACCTGTCCAGAGCAATAA+GGG 0.422481 3_2:-83339204 None:intergenic
CAGTTCTGCCCTTATTGCTC+TGG 0.425958 3_2:+83339196 Msa0431270:CDS
ATTGATTTAACGGAGGCATC+AGG 0.434244 3_2:-83339161 None:intergenic
AGACATGGAAACGGAGAACT+TGG 0.443335 3_2:+83339787 Msa0431270:CDS
ACCATCAGACGTGTTAAGTA+AGG 0.446609 3_2:+83339730 Msa0431270:CDS
GCCGATCTCTACTTCGCTCT+GGG 0.469537 3_2:+83338367 Msa0431270:CDS
GGATAAACACCATGCCAACT+TGG 0.470426 3_2:+83339988 Msa0431270:three_prime_UTR
TAGCTGATTCATACTTGGAC+CGG 0.479874 3_2:+83339762 Msa0431270:CDS
GGTTATAGCTGATTCATACT+TGG 0.482554 3_2:+83339757 Msa0431270:CDS
CTGCCCTTATTGCTCTGGAC+AGG 0.483084 3_2:+83339201 Msa0431270:CDS
CGCCTGCCTTCCTTCCATGA+TGG 0.483322 3_2:-83336372 None:intergenic
CATTACCCAAATCCTTGATC+TGG 0.483632 3_2:-83337933 None:intergenic
CGCCATCATGGAAGGAAGGC+AGG 0.488050 3_2:+83336370 Msa0431270:CDS
CATGGAAATAGAAGTTCTAA+AGG 0.488268 3_2:-83340129 None:intergenic
TTTGTATGTATTAAACATGA+AGG 0.490256 3_2:+83336208 Msa0431270:five_prime_UTR
GTGGGAGAGAACAAGAGAGA+TGG 0.492502 3_2:-83336403 None:intergenic
ATTCTGTTTCTGAAGGTCAC+TGG 0.496213 3_2:+83339097 Msa0431270:intron
GAAACGGAGAACTTGGACCC+TGG 0.503257 3_2:+83339794 Msa0431270:CDS
TTATGGACAAATATGTTAAG+AGG 0.506114 3_2:+83336574 Msa0431270:CDS
CCCTTACTTAACACGTCTGA+TGG 0.507207 3_2:-83339731 None:intergenic
TGGTTTCAGCCTCTTACAAA+CGG 0.513105 3_2:+83339706 Msa0431270:intron
CACGCAGAAGCAAGGAATCA+AGG 0.516697 3_2:-83339124 None:intergenic
CTGATGGTACCGTTTGTAAG+AGG 0.521003 3_2:-83339715 None:intergenic
AGCGAAGTAGAGATCGGCAG+AGG 0.521610 3_2:-83338362 None:intergenic
CCTCACACAGTTCCAGATCA+AGG 0.524145 3_2:+83337921 Msa0431270:CDS
GATTCTAATTGCTTTAAACC+AGG 0.530046 3_2:-83339812 None:intergenic
CGACTTGAACAACAATGCAA+TGG 0.531568 3_2:-83336327 None:intergenic
CATTGCATTGTTGTTCAAGT+CGG 0.538107 3_2:+83336328 Msa0431270:CDS
TATGCTTCTGACAGTGGCAA+TGG 0.552161 3_2:+83338936 Msa0431270:CDS
ATTCTAATTGCTTTAAACCA+GGG 0.552324 3_2:-83339811 None:intergenic
GTTAGGAAAGAGAATGAAGT+GGG 0.552640 3_2:-83336421 None:intergenic
GCTGTACTTGCTAACATGCG+CGG 0.553235 3_2:-83336301 None:intergenic
TAAACACCATGCCAACTTGG+TGG 0.553430 3_2:+83339991 Msa0431270:three_prime_UTR
CTGTACTTGCTAACATGCGC+GGG 0.554195 3_2:-83336300 None:intergenic
GCATTGTTGTTCAAGTCGGA+AGG 0.556474 3_2:+83336332 Msa0431270:CDS
ATGTTCCTAACTGCGTGAAC+CGG 0.556938 3_2:-83340218 None:intergenic
TTGATCTAAGTCCACCAAGT+TGG 0.564731 3_2:-83340002 None:intergenic
GAAGAGATAAGAGTATTGTG+TGG 0.564905 3_2:+83336232 Msa0431270:five_prime_UTR
TGCCTCCGTTAAATCAATGA+AGG 0.566338 3_2:+83339166 Msa0431270:CDS
TGAACTGTCGCCATCATGGA+AGG 0.567419 3_2:+83336362 Msa0431270:CDS
TCTTGAAGCACGCAGAAGCA+AGG 0.570877 3_2:-83339132 None:intergenic
GGACCGGGAAGACATGGAAA+CGG 0.574097 3_2:+83339778 Msa0431270:CDS
CTGTCGCCATCATGGAAGGA+AGG 0.576016 3_2:+83336366 Msa0431270:CDS
AAATGAGGATGCAGATGCAA+AGG 0.580398 3_2:-83339962 None:intergenic
GCCCAGAGCGAAGTAGAGAT+CGG 0.581943 3_2:-83338368 None:intergenic
ATACTTGGACCGGGAAGACA+TGG 0.582312 3_2:+83339772 Msa0431270:CDS
AGCTGATTCATACTTGGACC+GGG 0.583181 3_2:+83339763 Msa0431270:CDS
AGACGTGTTAAGTAAGGGAA+AGG 0.583469 3_2:+83339736 Msa0431270:CDS
GTTACAGGTGCTACTGCTGA+AGG 0.587152 3_2:+83336546 Msa0431270:intron
CCTTGATCTGGAACTGTGTG+AGG 0.597626 3_2:-83337921 None:intergenic
CCATCAGACGTGTTAAGTAA+GGG 0.598697 3_2:+83339731 Msa0431270:CDS
AGTGTGAACTGTCGCCATCA+TGG 0.598878 3_2:+83336358 Msa0431270:CDS
TTCCAAGTCCTTAAACAACA+TGG 0.601597 3_2:-83340147 None:intergenic
CTTAACAACAGTTATTACAC+CGG 0.603864 3_2:+83340199 Msa0431270:three_prime_UTR
GCGAAGTAGAGATCGGCAGA+GGG 0.604621 3_2:-83338361 None:intergenic
CTAAGTCCACCAAGTTGGCA+TGG 0.605907 3_2:-83339997 None:intergenic
GGTTAGGAAAGAGAATGAAG+TGG 0.616069 3_2:-83336422 None:intergenic
TTTACACGAAGAGATGCTGC+AGG 0.626649 3_2:-83338390 None:intergenic
TGCCTTCATTGATTTAACGG+AGG 0.631585 3_2:-83339168 None:intergenic
ATGGAAGGAAGGCAGGCGCA+TGG 0.631810 3_2:+83336377 Msa0431270:CDS
AACTGTGTGAGGATTACAGC+TGG 0.642570 3_2:-83337910 None:intergenic
GCGCAATATGCTTCTGACAG+TGG 0.644065 3_2:+83338930 Msa0431270:CDS
CTGTTTCTGAAGGTCACTGG+AGG 0.644931 3_2:+83339100 Msa0431270:intron
GCTGGTACGTAAGTCTCCAG+AGG 0.686740 3_2:-83337892 None:intergenic
ACAATGTTGATGATTGTCTG+AGG 0.713768 3_2:+83338973 Msa0431270:CDS
GATCGGCAGAGGGAAAATTG+GGG 0.716033 3_2:-83338351 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTAAACTTTA+GGG - chr3_2:83336913-83336932 None:intergenic 10.0%
!!! TATTTTCATAATAATTTTTG+CGG - chr3_2:83339015-83339034 None:intergenic 10.0%
!!! TTTTTTTTTCTTTCTGTTTA+CGG + chr3_2:83336471-83336490 Msa0431270:intron 15.0%
!!! CATTTTTTTTTGCTTAAATT+TGG + chr3_2:83336603-83336622 Msa0431270:intron 15.0%
!!! GTTTGATTTAATTAAACTTT+AGG - chr3_2:83336914-83336933 None:intergenic 15.0%
!! TTATTTGAATGATACTTTAT+TGG + chr3_2:83337031-83337050 Msa0431270:intron 15.0%
!! TCAAAAAAAAATTACGAAAT+AGG - chr3_2:83337118-83337137 None:intergenic 15.0%
!!! TATTTCGTAATTTTTTTTTG+AGG + chr3_2:83337117-83337136 Msa0431270:intron 15.0%
!! ATGATACAATTAGTATTAAA+CGG + chr3_2:83337411-83337430 Msa0431270:intron 15.0%
!!! ATTTTCATAATAATTTTTGC+GGG - chr3_2:83339014-83339033 None:intergenic 15.0%
!!! AAATGTTTTCACAAAATAAA+CGG - chr3_2:83339339-83339358 None:intergenic 15.0%
!! CAATAAAAATGTCAAAATAA+TGG - chr3_2:83339496-83339515 None:intergenic 15.0%
!! TTTGTATGTATTAAACATGA+AGG + chr3_2:83336208-83336227 Msa0431270:five_prime_UTR 20.0%
!!! AATAACATTGCATTCTAAAA+GGG - chr3_2:83337088-83337107 None:intergenic 20.0%
!!! TTGCTTTTTATAATTTGTAC+TGG + chr3_2:83337766-83337785 Msa0431270:intron 20.0%
!!! TGCTTTTTATAATTTGTACT+GGG + chr3_2:83337767-83337786 Msa0431270:intron 20.0%
!! TTACGTATTTATATCATACT+TGG + chr3_2:83338026-83338045 Msa0431270:intron 20.0%
!! TATTACAGAAAAAACTTTAG+AGG + chr3_2:83338320-83338339 Msa0431270:intron 20.0%
!! ATTACAGAAAAAACTTTAGA+GGG + chr3_2:83338321-83338340 Msa0431270:intron 20.0%
!! AAGTGTATATATACTTAAGT+CGG + chr3_2:83338620-83338639 Msa0431270:intron 20.0%
!! AAAGTAAATGATGATAAACA+TGG - chr3_2:83338852-83338871 None:intergenic 20.0%
!!! GTTTTTCATAATCATAAAAC+TGG - chr3_2:83339059-83339078 None:intergenic 20.0%
!! CTTATTATGTACAAGAAAAA+GGG - chr3_2:83339255-83339274 None:intergenic 20.0%
!!! AATGTTTTCACAAAATAAAC+GGG - chr3_2:83339338-83339357 None:intergenic 20.0%
!!! AAAATGTTTTCGCAAAATAA+TGG + chr3_2:83339605-83339624 Msa0431270:intron 20.0%
!!! AAATGTTTTCGCAAAATAAT+GGG + chr3_2:83339606-83339625 Msa0431270:intron 20.0%
!! ATATTAAGAATATCATCAGA+TGG - chr3_2:83339681-83339700 None:intergenic 20.0%
!!! TGATATTCTTAATATGCTTT+TGG + chr3_2:83339686-83339705 Msa0431270:intron 20.0%
!!! TTAGATCAATGTTTTTTTTC+AGG + chr3_2:83340016-83340035 Msa0431270:three_prime_UTR 20.0%
!!! TAGAGAAACATATTAACTTT+TGG + chr3_2:83340077-83340096 Msa0431270:three_prime_UTR 20.0%
!! TCTCTTTTATTCTATGTTAC+AGG + chr3_2:83336531-83336550 Msa0431270:intron 25.0%
! TTATGGACAAATATGTTAAG+AGG + chr3_2:83336574-83336593 Msa0431270:CDS 25.0%
! AAATCACAAATCCAAAACAA+GGG - chr3_2:83336653-83336672 None:intergenic 25.0%
!! GAATCCAATTTGTTTAATCA+AGG + chr3_2:83336705-83336724 Msa0431270:intron 25.0%
! TAAGCCTTGATTAAACAAAT+TGG - chr3_2:83336712-83336731 None:intergenic 25.0%
!!! AATTAAACTTTAGGGCTATT+TGG - chr3_2:83336905-83336924 None:intergenic 25.0%
!! GGAAAACTAAGATAAGTTTT+TGG - chr3_2:83336952-83336971 None:intergenic 25.0%
! CATTCAAATAATGTCTGAAA+TGG - chr3_2:83337022-83337041 None:intergenic 25.0%
! GAATAACATTGCATTCTAAA+AGG - chr3_2:83337089-83337108 None:intergenic 25.0%
! GATAAAGTGCAAACATATTA+GGG + chr3_2:83337154-83337173 Msa0431270:intron 25.0%
! TAATAACATGACAAAGAACA+AGG - chr3_2:83337182-83337201 None:intergenic 25.0%
! TTCTCAAAGAATGAACAAAA+AGG - chr3_2:83337225-83337244 None:intergenic 25.0%
!! ACATATAAGCTATACTTTTC+CGG + chr3_2:83337365-83337384 Msa0431270:intron 25.0%
! AACCAAGACTTATTTCAATT+AGG + chr3_2:83337466-83337485 Msa0431270:intron 25.0%
! ACCAAGACTTATTTCAATTA+GGG + chr3_2:83337467-83337486 Msa0431270:intron 25.0%
! TTATCCACATCAAAAATACT+GGG - chr3_2:83337557-83337576 None:intergenic 25.0%
! ATTATCCACATCAAAAATAC+TGG - chr3_2:83337558-83337577 None:intergenic 25.0%
!!! TTTTTGTTATGATCACAAGT+AGG + chr3_2:83337596-83337615 Msa0431270:intron 25.0%
! AGCTACTCTAATTTAATTCA+AGG - chr3_2:83337739-83337758 None:intergenic 25.0%
! GAATCAGAATTATCATTCTT+TGG - chr3_2:83337836-83337855 None:intergenic 25.0%
!! TATTTGTAAACCTCTGATTT+TGG + chr3_2:83338001-83338020 Msa0431270:intron 25.0%
!! TATATCATACTTGGTTCTTA+TGG + chr3_2:83338035-83338054 Msa0431270:intron 25.0%
! TCTTCTTTCATTGGTAAATT+TGG + chr3_2:83338125-83338144 Msa0431270:intron 25.0%
! TTCTGTAATAGTAGAAAGAA+AGG - chr3_2:83338310-83338329 None:intergenic 25.0%
!! GAAAAACTTTTAACATCCAA+AGG - chr3_2:83338482-83338501 None:intergenic 25.0%
!!! TCTTTTATTTTTCCTTCCAT+GGG - chr3_2:83338682-83338701 None:intergenic 25.0%
! ACGAATATCATATCAACAAT+GGG - chr3_2:83338807-83338826 None:intergenic 25.0%
! AACGAATATCATATCAACAA+TGG - chr3_2:83338808-83338827 None:intergenic 25.0%
!!! TTTTGCCTTCATTGATTTAA+CGG - chr3_2:83339174-83339193 None:intergenic 25.0%
! CCTTATTATGTACAAGAAAA+AGG - chr3_2:83339256-83339275 None:intergenic 25.0%
!! CCTTTTTCTTGTACATAATA+AGG + chr3_2:83339253-83339272 Msa0431270:intron 25.0%
!! ATTCTAATTGCTTTAAACCA+GGG - chr3_2:83339814-83339833 None:intergenic 25.0%
!! TTCTATTTCCATGTTGTTTA+AGG + chr3_2:83340139-83340158 Msa0431270:three_prime_UTR 25.0%
!! TAAGAGTATTGTGTGGATAA+TGG + chr3_2:83336239-83336258 Msa0431270:exon 30.0%
AAATGATTGAAAAGAGAGAG+AGG - chr3_2:83336454-83336473 None:intergenic 30.0%
TTCAATGTGCATAACAAAGA+AGG - chr3_2:83336509-83336528 None:intergenic 30.0%
!! TTTTTCATACACCCTTGTTT+TGG + chr3_2:83336639-83336658 Msa0431270:intron 30.0%
CAAATCACAAATCCAAAACA+AGG - chr3_2:83336654-83336673 None:intergenic 30.0%
AACAAATTGGATTCCAAACA+GGG - chr3_2:83336699-83336718 None:intergenic 30.0%
AAACAAATTGGATTCCAAAC+AGG - chr3_2:83336700-83336719 None:intergenic 30.0%
! GCTATTATTATTAGCTCTTC+CGG + chr3_2:83336825-83336844 Msa0431270:intron 30.0%
! TCAAATAATGTCTGAAATGG+AGG - chr3_2:83337019-83337038 None:intergenic 30.0%
GGATAAAGTGCAAACATATT+AGG + chr3_2:83337153-83337172 Msa0431270:intron 30.0%
AAAAAGACATGCATGATCAT+AGG + chr3_2:83337255-83337274 Msa0431270:intron 30.0%
!! TGTTGCATTTTGACATTAGT+TGG + chr3_2:83337504-83337523 Msa0431270:intron 30.0%
!! GTTGCATTTTGACATTAGTT+GGG + chr3_2:83337505-83337524 Msa0431270:intron 30.0%
!! TTGCATTTTGACATTAGTTG+GGG + chr3_2:83337506-83337525 Msa0431270:intron 30.0%
!! ATTTCCCAGTATTTTTGATG+TGG + chr3_2:83337550-83337569 Msa0431270:intron 30.0%
CTAAAGATATGATACAACGT+AGG - chr3_2:83337715-83337734 None:intergenic 30.0%
TCAGAATTATCATTCTTTGG+AGG - chr3_2:83337833-83337852 None:intergenic 30.0%
ATCAGAGGTTTACAAATATC+TGG - chr3_2:83337999-83338018 None:intergenic 30.0%
AATATTCGAGCAGTAAGTAA+AGG + chr3_2:83338411-83338430 Msa0431270:intron 30.0%
AAGAAGAACTCAGAAGTTAA+AGG - chr3_2:83338440-83338459 None:intergenic 30.0%
CAAAAAAATGAATTCCCTGT+TGG + chr3_2:83338519-83338538 Msa0431270:intron 30.0%
!!! CTCTTTTATTTTTCCTTCCA+TGG - chr3_2:83338683-83338702 None:intergenic 30.0%
!! TTTCTGAAATCTGCATGATA+TGG - chr3_2:83338729-83338748 None:intergenic 30.0%
! TCTATTGTTCTATGCTGTTT+GGG - chr3_2:83338755-83338774 None:intergenic 30.0%
ATCTATTGTTCTATGCTGTT+TGG - chr3_2:83338756-83338775 None:intergenic 30.0%
CCACTAATTAACTTTCATAC+AGG - chr3_2:83338889-83338908 None:intergenic 30.0%
CCTGTATGAAAGTTAATTAG+TGG + chr3_2:83338886-83338905 Msa0431270:intron 30.0%
AGAAACAGAATTCTTCAGTT+GGG - chr3_2:83339088-83339107 None:intergenic 30.0%
ATTATGTACAAGAAAAAGGG+AGG - chr3_2:83339252-83339271 None:intergenic 30.0%
! TTTGAAACGAATCATTGTGA+TGG + chr3_2:83339418-83339437 Msa0431270:intron 30.0%
! GATTCTAATTGCTTTAAACC+AGG - chr3_2:83339815-83339834 None:intergenic 30.0%
TGGTGTTTATCCAAAAAATG+AGG - chr3_2:83339980-83339999 None:intergenic 30.0%
!!! GATCAATGTTTTTTTTCAGG+AGG + chr3_2:83340019-83340038 Msa0431270:three_prime_UTR 30.0%
!!! GTTTTTTTTCAGGAGGAATA+TGG + chr3_2:83340026-83340045 Msa0431270:three_prime_UTR 30.0%
! CATGGAAATAGAAGTTCTAA+AGG - chr3_2:83340132-83340151 None:intergenic 30.0%
CTTAACAACAGTTATTACAC+CGG + chr3_2:83340199-83340218 Msa0431270:three_prime_UTR 30.0%
!! GAAGAGATAAGAGTATTGTG+TGG + chr3_2:83336232-83336251 Msa0431270:five_prime_UTR 35.0%
! CATTGCATTGTTGTTCAAGT+CGG + chr3_2:83336328-83336347 Msa0431270:CDS 35.0%
GTTAGGAAAGAGAATGAAGT+GGG - chr3_2:83336424-83336443 None:intergenic 35.0%
GATTCCAAACAGGGAATAAT+GGG - chr3_2:83336690-83336709 None:intergenic 35.0%
CTTAAGTTTATCTACTTGCC+CGG - chr3_2:83336873-83336892 None:intergenic 35.0%
GTACTTGCCCATTAAGAATT+GGG + chr3_2:83336991-83337010 Msa0431270:intron 35.0%
AAAGTACGTCTACGCTATAT+AGG + chr3_2:83337056-83337075 Msa0431270:intron 35.0%
! AAGGAGTATGTACTTCGATT+CGG - chr3_2:83337206-83337225 None:intergenic 35.0%
CATGCATGATCATAGGATAT+TGG + chr3_2:83337262-83337281 Msa0431270:intron 35.0%
CATGATCATAGGATATTGGT+GGG + chr3_2:83337266-83337285 Msa0431270:intron 35.0%
ATGATCATAGGATATTGGTG+GGG + chr3_2:83337267-83337286 Msa0431270:intron 35.0%
GTACATGATTCGTTTGATGA+TGG + chr3_2:83337292-83337311 Msa0431270:intron 35.0%
GCCCTAATTGAAATAAGTCT+TGG - chr3_2:83337471-83337490 None:intergenic 35.0%
ATACGTAACACCAAAATCAG+AGG - chr3_2:83338014-83338033 None:intergenic 35.0%
! ACGCGTTTTTCTTCTTTCAT+TGG + chr3_2:83338116-83338135 Msa0431270:intron 35.0%
TGCATTCGTTTATCAGAATG+AGG - chr3_2:83338151-83338170 None:intergenic 35.0%
! TTGGACTGACTCAATCAAAA+GGG - chr3_2:83338558-83338577 None:intergenic 35.0%
! TTTGGACTGACTCAATCAAA+AGG - chr3_2:83338559-83338578 None:intergenic 35.0%
AATGAAGACTCAGATTGCTT+TGG - chr3_2:83338577-83338596 None:intergenic 35.0%
CTGCATGATATGGAAGAAAT+TGG - chr3_2:83338719-83338738 None:intergenic 35.0%
!! GTGGTTCACAAACTTTTTCT+AGG + chr3_2:83338905-83338924 Msa0431270:intron 35.0%
!! ACAATGTTGATGATTGTCTG+AGG + chr3_2:83338973-83338992 Msa0431270:CDS 35.0%
CAGAAACAGAATTCTTCAGT+TGG - chr3_2:83339089-83339108 None:intergenic 35.0%
!! CTGAAGAATTCTGTTTCTGA+AGG + chr3_2:83339090-83339109 Msa0431270:intron 35.0%
GATTAAGAGAGATTCTGCAA+AGG - chr3_2:83339287-83339306 None:intergenic 35.0%
TCTCTTAATCTTACAGCCTT+TGG + chr3_2:83339297-83339316 Msa0431270:intron 35.0%
! AACGAATCATTGTGATGGAA+AGG + chr3_2:83339423-83339442 Msa0431270:intron 35.0%
AAGGAGATGAAATGTTAGCT+AGG + chr3_2:83339442-83339461 Msa0431270:intron 35.0%
AGGAGATGAAATGTTAGCTA+GGG + chr3_2:83339443-83339462 Msa0431270:intron 35.0%
GCTGTGTGTAAACTGTAAAT+TGG - chr3_2:83339657-83339676 None:intergenic 35.0%
! GGTTATAGCTGATTCATACT+TGG + chr3_2:83339757-83339776 Msa0431270:CDS 35.0%
!!! CTCGTACTTTTGATTTCTGT+TGG - chr3_2:83340107-83340126 None:intergenic 35.0%
! TTCCATGTTGTTTAAGGACT+TGG + chr3_2:83340145-83340164 Msa0431270:three_prime_UTR 35.0%
TTCCAAGTCCTTAAACAACA+TGG - chr3_2:83340150-83340169 None:intergenic 35.0%
CGACTTGAACAACAATGCAA+TGG - chr3_2:83336330-83336349 None:intergenic 40.0%
GGTTAGGAAAGAGAATGAAG+TGG - chr3_2:83336425-83336444 None:intergenic 40.0%
GAAAAGAGAGAGAGGAGATA+CGG - chr3_2:83336446-83336465 None:intergenic 40.0%
!! TACTGCTGAAGGAAGCATTA+TGG + chr3_2:83336557-83336576 Msa0431270:CDS 40.0%
AGTTCCCATTATTCCCTGTT+TGG + chr3_2:83336683-83336702 Msa0431270:intron 40.0%
GGATTCCAAACAGGGAATAA+TGG - chr3_2:83336691-83336710 None:intergenic 40.0%
!! CTTATCTTAGTTTTCCCCAG+TGG + chr3_2:83336956-83336975 Msa0431270:intron 40.0%
GGTACTTGCCCATTAAGAAT+TGG + chr3_2:83336990-83337009 Msa0431270:intron 40.0%
!! GGAGGTACCCAATTCTTAAT+GGG - chr3_2:83337001-83337020 None:intergenic 40.0%
!! TGGAGGTACCCAATTCTTAA+TGG - chr3_2:83337002-83337021 None:intergenic 40.0%
!!! TTTTTGAGGTGCTAGCTTGA+AGG + chr3_2:83337131-83337150 Msa0431270:intron 40.0%
!!! TTTTGAGGTGCTAGCTTGAA+GGG + chr3_2:83337132-83337151 Msa0431270:intron 40.0%
GCATGATCATAGGATATTGG+TGG + chr3_2:83337265-83337284 Msa0431270:intron 40.0%
!! CATGATTCGTTTGATGATGG+TGG + chr3_2:83337295-83337314 Msa0431270:intron 40.0%
ATCTCTGTGTTCTCATCATC+CGG - chr3_2:83337387-83337406 None:intergenic 40.0%
TAGAAAAAAGCTAGAGCCTC+TGG + chr3_2:83337876-83337895 Msa0431270:intron 40.0%
ACAGTTCCAGATCAAGGATT+TGG + chr3_2:83337927-83337946 Msa0431270:CDS 40.0%
CAGTTCCAGATCAAGGATTT+GGG + chr3_2:83337928-83337947 Msa0431270:CDS 40.0%
CATTACCCAAATCCTTGATC+TGG - chr3_2:83337936-83337955 None:intergenic 40.0%
ATCTAGCATGACAGAGAAAG+CGG - chr3_2:83337974-83337993 None:intergenic 40.0%
CTAGTTGTGAAGAGTGAACA+TGG - chr3_2:83338219-83338238 None:intergenic 40.0%
CATGTTCACTCTTCACAACT+AGG + chr3_2:83338217-83338236 Msa0431270:intron 40.0%
TTCACAACTAGGATTGCTCT+AGG + chr3_2:83338228-83338247 Msa0431270:intron 40.0%
TCTCGCATCTCTTATACCTT+TGG + chr3_2:83338463-83338482 Msa0431270:intron 40.0%
! ACTGACTCAATCAAAAGGGA+GGG - chr3_2:83338554-83338573 None:intergenic 40.0%
!!! CTCAAGATTTTCAAGTCCCA+TGG + chr3_2:83338663-83338682 Msa0431270:intron 40.0%
!!! AGATTTTCAAGTCCCATGGA+AGG + chr3_2:83338667-83338686 Msa0431270:intron 40.0%
!! ATTCTGTTTCTGAAGGTCAC+TGG + chr3_2:83339097-83339116 Msa0431270:intron 40.0%
!! ATTGATTTAACGGAGGCATC+AGG - chr3_2:83339164-83339183 None:intergenic 40.0%
TGCCTCCGTTAAATCAATGA+AGG + chr3_2:83339166-83339185 Msa0431270:CDS 40.0%
!! TGCCTTCATTGATTTAACGG+AGG - chr3_2:83339171-83339190 None:intergenic 40.0%
GGTGATTTGAATTCGTTGTG+TGG + chr3_2:83339222-83339241 Msa0431270:intron 40.0%
TGGTTTCAGCCTCTTACAAA+CGG + chr3_2:83339706-83339725 Msa0431270:intron 40.0%
ACCATCAGACGTGTTAAGTA+AGG + chr3_2:83339730-83339749 Msa0431270:CDS 40.0%
CCATCAGACGTGTTAAGTAA+GGG + chr3_2:83339731-83339750 Msa0431270:CDS 40.0%
AGACGTGTTAAGTAAGGGAA+AGG + chr3_2:83339736-83339755 Msa0431270:CDS 40.0%
! TAGCTGATTCATACTTGGAC+CGG + chr3_2:83339762-83339781 Msa0431270:CDS 40.0%
AAATGAGGATGCAGATGCAA+AGG - chr3_2:83339965-83339984 None:intergenic 40.0%
!!! GCATCTGCATCCTCATTTTT+TGG + chr3_2:83339967-83339986 Msa0431270:three_prime_UTR 40.0%
TTGATCTAAGTCCACCAAGT+TGG - chr3_2:83340005-83340024 None:intergenic 40.0%
! GCATTGTTGTTCAAGTCGGA+AGG + chr3_2:83336332-83336351 Msa0431270:CDS 45.0%
CTAACAGTCTCTCCAGTAAC+CGG + chr3_2:83336851-83336870 Msa0431270:intron 45.0%
TAACAGTCTCTCCAGTAACC+GGG + chr3_2:83336852-83336871 Msa0431270:intron 45.0%
TTATCTACTTGCCCGGTTAC+TGG - chr3_2:83336866-83336885 None:intergenic 45.0%
!! ATCTTAGTTTTCCCCAGTGG+TGG + chr3_2:83336959-83336978 Msa0431270:intron 45.0%
TACCATTAAGCACCACCACT+GGG - chr3_2:83336974-83336993 None:intergenic 45.0%
AACTGTGTGAGGATTACAGC+TGG - chr3_2:83337913-83337932 None:intergenic 45.0%
GAAAGCGGTTCACGAAAAAC+TGG - chr3_2:83337959-83337978 None:intergenic 45.0%
AGATCGGCAGAGGGAAAATT+GGG - chr3_2:83338355-83338374 None:intergenic 45.0%
TTTACACGAAGAGATGCTGC+AGG - chr3_2:83338393-83338412 None:intergenic 45.0%
TGACTCAATCAAAAGGGAGG+GGG - chr3_2:83338552-83338571 None:intergenic 45.0%
CTGACTCAATCAAAAGGGAG+GGG - chr3_2:83338553-83338572 None:intergenic 45.0%
! GACTGACTCAATCAAAAGGG+AGG - chr3_2:83338555-83338574 None:intergenic 45.0%
TATGCTTCTGACAGTGGCAA+TGG + chr3_2:83338936-83338955 Msa0431270:CDS 45.0%
TCACCTGTCCAGAGCAATAA+GGG - chr3_2:83339207-83339226 None:intergenic 45.0%
ATCACCTGTCCAGAGCAATA+AGG - chr3_2:83339208-83339227 None:intergenic 45.0%
TAAACGGGACCTTAGCTAGT+CGG - chr3_2:83339323-83339342 None:intergenic 45.0%
CTGATGGTACCGTTTGTAAG+AGG - chr3_2:83339718-83339737 None:intergenic 45.0%
CCCTTACTTAACACGTCTGA+TGG - chr3_2:83339734-83339753 None:intergenic 45.0%
! AGCTGATTCATACTTGGACC+GGG + chr3_2:83339763-83339782 Msa0431270:CDS 45.0%
AGACATGGAAACGGAGAACT+TGG + chr3_2:83339787-83339806 Msa0431270:CDS 45.0%
GGATAAACACCATGCCAACT+TGG + chr3_2:83339988-83340007 Msa0431270:three_prime_UTR 45.0%
TAAACACCATGCCAACTTGG+TGG + chr3_2:83339991-83340010 Msa0431270:three_prime_UTR 45.0%
! CTGTACTTGCTAACATGCGC+GGG - chr3_2:83336303-83336322 None:intergenic 50.0%
! GCTGTACTTGCTAACATGCG+CGG - chr3_2:83336304-83336323 None:intergenic 50.0%
AGTGTGAACTGTCGCCATCA+TGG + chr3_2:83336358-83336377 Msa0431270:CDS 50.0%
TGAACTGTCGCCATCATGGA+AGG + chr3_2:83336362-83336381 Msa0431270:CDS 50.0%
GTGGGAGAGAACAAGAGAGA+TGG - chr3_2:83336406-83336425 None:intergenic 50.0%
GAGAGAGAGGAGATACGGTT+AGG - chr3_2:83336441-83336460 None:intergenic 50.0%
!! GTTACAGGTGCTACTGCTGA+AGG + chr3_2:83336546-83336565 Msa0431270:intron 50.0%
CTGGAGAGACTGTTAGGAAC+CGG - chr3_2:83336847-83336866 None:intergenic 50.0%
CGGTTACTGGAGAGACTGTT+AGG - chr3_2:83336853-83336872 None:intergenic 50.0%
ACCATTAAGCACCACCACTG+GGG - chr3_2:83336973-83336992 None:intergenic 50.0%
GTACCATTAAGCACCACCAC+TGG - chr3_2:83336975-83336994 None:intergenic 50.0%
! CCTTGATCTGGAACTGTGTG+AGG - chr3_2:83337924-83337943 None:intergenic 50.0%
CCTCACACAGTTCCAGATCA+AGG + chr3_2:83337921-83337940 Msa0431270:CDS 50.0%
GATCGGCAGAGGGAAAATTG+GGG - chr3_2:83338354-83338373 None:intergenic 50.0%
GAGATCGGCAGAGGGAAAAT+TGG - chr3_2:83338356-83338375 None:intergenic 50.0%
GAGGGGGAAAACTTCCAACA+GGG - chr3_2:83338536-83338555 None:intergenic 50.0%
GCGCAATATGCTTCTGACAG+TGG + chr3_2:83338930-83338949 Msa0431270:CDS 50.0%
!! CTGTTTCTGAAGGTCACTGG+AGG + chr3_2:83339100-83339119 Msa0431270:intron 50.0%
CACGCAGAAGCAAGGAATCA+AGG - chr3_2:83339127-83339146 None:intergenic 50.0%
TCTTGAAGCACGCAGAAGCA+AGG - chr3_2:83339135-83339154 None:intergenic 50.0%
CAGTTCTGCCCTTATTGCTC+TGG + chr3_2:83339196-83339215 Msa0431270:CDS 50.0%
ATACTTGGACCGGGAAGACA+TGG + chr3_2:83339772-83339791 Msa0431270:CDS 50.0%
TCTCCGTTTCCATGTCTTCC+CGG - chr3_2:83339784-83339803 None:intergenic 50.0%
! CTAAGTCCACCAAGTTGGCA+TGG - chr3_2:83340000-83340019 None:intergenic 50.0%
CTGTCGCCATCATGGAAGGA+AGG + chr3_2:83336366-83336385 Msa0431270:CDS 55.0%
! TCCCCAGTGGTGGTGCTTAA+TGG + chr3_2:83336969-83336988 Msa0431270:intron 55.0%
GCTGGTACGTAAGTCTCCAG+AGG - chr3_2:83337895-83337914 None:intergenic 55.0%
GCGAAGTAGAGATCGGCAGA+GGG - chr3_2:83338364-83338383 None:intergenic 55.0%
AGCGAAGTAGAGATCGGCAG+AGG - chr3_2:83338365-83338384 None:intergenic 55.0%
TGCCGATCTCTACTTCGCTC+TGG + chr3_2:83338366-83338385 Msa0431270:CDS 55.0%
GCCGATCTCTACTTCGCTCT+GGG + chr3_2:83338367-83338386 Msa0431270:CDS 55.0%
GCCCAGAGCGAAGTAGAGAT+CGG - chr3_2:83338371-83338390 None:intergenic 55.0%
GGAGGGGGAAAACTTCCAAC+AGG - chr3_2:83338537-83338556 None:intergenic 55.0%
! CTGCCCTTATTGCTCTGGAC+AGG + chr3_2:83339201-83339220 Msa0431270:CDS 55.0%
! AGCCTTTGGCCGACTAGCTA+AGG + chr3_2:83339311-83339330 Msa0431270:intron 55.0%
GACCTTAGCTAGTCGGCCAA+AGG - chr3_2:83339316-83339335 None:intergenic 55.0%
GGACCGGGAAGACATGGAAA+CGG + chr3_2:83339778-83339797 Msa0431270:CDS 55.0%
GAAACGGAGAACTTGGACCC+TGG + chr3_2:83339794-83339813 Msa0431270:CDS 55.0%
CGCCATCATGGAAGGAAGGC+AGG + chr3_2:83336370-83336389 Msa0431270:CDS 60.0%
CGCCTGCCTTCCTTCCATGA+TGG - chr3_2:83336375-83336394 None:intergenic 60.0%
ATGGAAGGAAGGCAGGCGCA+TGG + chr3_2:83336377-83336396 Msa0431270:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 83336208 83340228 83336208 ID=Msa0431270;Name=Msa0431270
chr3_2 mRNA 83336208 83340228 83336208 ID=Msa0431270-mRNA-1;Parent=Msa0431270;Name=Msa0431270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=50|1|1|1|1|1|7|384|234
chr3_2 exon 83336208 83336444 83336208 ID=Msa0431270-mRNA-1:exon:23227;Parent=Msa0431270-mRNA-1
chr3_2 exon 83336553 83336595 83336553 ID=Msa0431270-mRNA-1:exon:23228;Parent=Msa0431270-mRNA-1
chr3_2 exon 83337879 83337949 83337879 ID=Msa0431270-mRNA-1:exon:23229;Parent=Msa0431270-mRNA-1
chr3_2 exon 83338328 83338422 83338328 ID=Msa0431270-mRNA-1:exon:23230;Parent=Msa0431270-mRNA-1
chr3_2 exon 83338927 83338994 83338927 ID=Msa0431270-mRNA-1:exon:23231;Parent=Msa0431270-mRNA-1
chr3_2 exon 83339112 83339222 83339112 ID=Msa0431270-mRNA-1:exon:23232;Parent=Msa0431270-mRNA-1
chr3_2 exon 83339715 83340228 83339715 ID=Msa0431270-mRNA-1:exon:23233;Parent=Msa0431270-mRNA-1
chr3_2 five_prime_UTR 83336208 83336257 83336208 ID=Msa0431270-mRNA-1:five_prime_utr;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83336258 83336444 83336258 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83336553 83336595 83336553 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83337879 83337949 83337879 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83338328 83338422 83338328 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83338927 83338994 83338927 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83339112 83339222 83339112 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 CDS 83339715 83339844 83339715 ID=Msa0431270-mRNA-1:cds;Parent=Msa0431270-mRNA-1
chr3_2 three_prime_UTR 83339845 83340228 83339845 ID=Msa0431270-mRNA-1:three_prime_utr;Parent=Msa0431270-mRNA-1
Gene Sequence

>Msa0431270

ATGGCATCATCATCATCATCATCATCATCATCAGTTGTGAGTCCCGCGCATGTTAGCAAGTACAGCAAACCATTGCATTGTTGTTCAAGTCGGAAGGTGAAGTGTGAACTGTCGCCATCATGGAAGGAAGGCAGGCGCATGGTCTCCATCTCTCTTGTTCTCTCCCACTTCATTCTCTTTCCTAACCGTGCTACTGCTGAAGGAAGCATTATGGACAAATATGTTAAGAGAAAAAAGCTAGAGCCTCTGGAGACTTACGTACCAGCTGTAATCCTCACACAGTTCCAGATCAAGGATTTGGAAAAAACTTTAGAGGGTAATGAGCCCCAATTTTCCCTCTGCCGATCTCTACTTCGCTCTGGGCCTGCAGCATCTCTTCGTGTAAATATTCGAGCAGTCGCGCAATATGCTTCTGACAGTGGCAATGGTAAAACTGCATTGAACAATGTTGATGATTGTCTGAGGTCACTGGAGGACCTTGATTCCTTGCTTCTGCGTGCTTCAAGAAATGATCCTGATGCCTCCGTTAAATCAATGAAGGCAAAAGTCAGTTCTGCCCTTATTGCTCTGGACAGCCTCTTACAAACGGTACCATCAGACGTGTTAAGTAAGGGAAAGGTTATAGCTGATTCATACTTGGACCGGGAAGACATGGAAACGGAGAACTTGGACCCTGGTTTAAAGCAATTAGAATCAATACTGTGA

Protein sequence

>Msa0431270

MASSSSSSSSSVVSPAHVSKYSKPLHCCSSRKVKCELSPSWKEGRRMVSISLVLSHFILFPNRATAEGSIMDKYVKRKKLEPLETYVPAVILTQFQIKDLEKTLEGNEPQFSLCRSLLRSGPAASLRVNIRAVAQYASDSGNGKTALNNVDDCLRSLEDLDSLLLRASRNDPDASVKSMKAKVSSALIALDSLLQTVPSDVLSKGKVIADSYLDREDMETENLDPGLKQLESIL*