AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395430 MtrunA17_Chr7g0273841 93.077 390 13 3 1 376 1 390 0.0 721
Msa1395430 MtrunA17_Chr8g0349411 59.821 336 64 11 1 275 1 326 3.34e-108 320
Msa1395430 MtrunA17_Chr8g0361041 90.000 110 11 0 201 310 6 115 1.01e-64 201
Msa1395430 MtrunA17_Chr3g0109341 42.405 316 125 7 96 373 23 319 1.60e-60 198
Msa1395430 MtrunA17_Chr3g0109331 42.258 310 133 8 96 370 23 321 1.14e-57 191
Msa1395430 MtrunA17_Chr8g0349401 87.671 73 9 0 304 376 6 78 1.86e-36 127
Msa1395430 MtrunA17_Chr8g0361031 74.194 93 9 2 299 376 7 99 9.69e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395430 AT1G54520.1 61.266 395 123 12 4 376 5 391 1.35e-144 416

Find 146 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTACTCTGCACCGTATTA+TGG 0.167452 tig0021940:+44388 Msa1395430:CDS
AAATGGGGATATTGATTAAT+TGG 0.179379 tig0021940:-43886 None:intergenic
GAATTAAATTGAATTGAAAA+TGG 0.198264 tig0021940:-43903 None:intergenic
TTAGAGTTTGTGTGCATTAT+CGG 0.270321 tig0021940:+49923 Msa1395430:three_prime_UTR
TTCTTGTAGGTTGGTTTGTT+GGG 0.272525 tig0021940:+46501 Msa1395430:intron
TTTACTTTGGACCTGCTGTT+GGG 0.289346 tig0021940:+44434 Msa1395430:CDS
TGGTTGCGAGAGATTGTAAT+AGG 0.297018 tig0021940:-44201 None:intergenic
CTTACTCTGCACCGTATTAT+GGG 0.301234 tig0021940:+44389 Msa1395430:CDS
CCACAGTTATTAGCTGAACT+TGG 0.314929 tig0021940:+49602 Msa1395430:three_prime_UTR
TGCAGGCAGTTGAGGTGTTA+TGG 0.316865 tig0021940:+49468 Msa1395430:intron
GAAGATCATCTTCGTCTTCT+AGG 0.322441 tig0021940:+44332 Msa1395430:CDS
AATCTCTCGCAACCACTATA+TGG 0.326831 tig0021940:+44209 Msa1395430:CDS
TGGACAATTATGTCAAATTA+AGG 0.328811 tig0021940:-49859 None:intergenic
AATTAAATTGAATTGAAAAT+GGG 0.335632 tig0021940:-43902 None:intergenic
CACTTCAAAGGGATCTCAAT+AGG 0.346195 tig0021940:+46535 Msa1395430:CDS
ACACAATGTCACACTGATAT+TGG 0.351804 tig0021940:-49734 None:intergenic
GTAGGTTGGTTTGTTGGGGA+TGG 0.358522 tig0021940:+46506 Msa1395430:intron
AGTTGTACATATTACCCATT+AGG 0.361505 tig0021940:+49789 Msa1395430:three_prime_UTR
ATTAGCTTTGCTTCGGCATC+CGG 0.368451 tig0021940:+47010 Msa1395430:CDS
GTTGGGGTTGGAGTTGGTGC+TGG 0.371881 tig0021940:+44451 Msa1395430:CDS
GTTCTTGTAGGTTGGTTTGT+TGG 0.376176 tig0021940:+46500 Msa1395430:intron
TCAGTTCCATCACCGAGTCC+TGG 0.378951 tig0021940:+44361 Msa1395430:CDS
CCTGCTGTTGGGGTTGGAGT+TGG 0.379807 tig0021940:+44445 Msa1395430:CDS
TATATATCAGATAACAATCT+TGG 0.384768 tig0021940:+49266 Msa1395430:intron
AACACGTCCTTGGCAGCATC+TGG 0.386556 tig0021940:+44295 Msa1395430:CDS
GTGACATTGTGTCACTATAA+AGG 0.386584 tig0021940:+49745 Msa1395430:three_prime_UTR
TGCTAAGATGAGAAATAAAC+TGG 0.388702 tig0021940:-44476 None:intergenic
GATGCTGCCAAGGACGTGTT+TGG 0.389014 tig0021940:-44292 None:intergenic
ACGAGAAGCCAGAGATCTAA+TGG 0.389758 tig0021940:+47684 Msa1395430:CDS
TTTGTAGGTGGACATAAAAC+GGG 0.392756 tig0021940:+47557 Msa1395430:intron
GTTTACTTTGGACCTGCTGT+TGG 0.396536 tig0021940:+44433 Msa1395430:CDS
GGCCTTCTCCGTTTAGCGGC+GGG 0.403324 tig0021940:+44410 Msa1395430:CDS
CGCACAAGTCTCCCATCATC+AGG 0.409626 tig0021940:+43833 Msa1395430:five_prime_UTR
TGCTGAACCCATTAGATCTC+TGG 0.409729 tig0021940:-47692 None:intergenic
CCTGTCTCTTCCATTTGAAA+TGG 0.411813 tig0021940:+44029 Msa1395430:CDS
AATATGTAACTCAAACCTTC+TGG 0.411911 tig0021940:-46585 None:intergenic
TTCTATAGATGAGATCCTAA+TGG 0.414275 tig0021940:-49804 None:intergenic
AATTTATCTGCTGTTGAATC+CGG 0.422102 tig0021940:+49893 Msa1395430:three_prime_UTR
TAGGTTGGTTTGTTGGGGAT+GGG 0.422903 tig0021940:+46507 Msa1395430:intron
AACCACCGTACTCAAGCTTC+AGG 0.427212 tig0021940:+44576 Msa1395430:CDS
GGCAGCATCTGGAGGTAGAA+TGG 0.429878 tig0021940:+44306 Msa1395430:CDS
GGTAGTGTTCTTACTGCTGC+TGG 0.430179 tig0021940:+44550 Msa1395430:CDS
TTTGGACCTGCTGTTGGGGT+TGG 0.434596 tig0021940:+44439 Msa1395430:CDS
TGCGACGATGATGGAATTGA+TGG 0.434750 tig0021940:-43943 None:intergenic
ATTGGTTGTTCCATTTCAAA+TGG 0.435368 tig0021940:-44039 None:intergenic
AGTTTATTTCTCATCTTAGC+AGG 0.437254 tig0021940:+44478 Msa1395430:CDS
TAATAATTTGCTCGAAGGAA+TGG 0.440166 tig0021940:-49367 None:intergenic
AAGTAAACCCCGCCGCTAAA+CGG 0.443423 tig0021940:-44418 None:intergenic
GCGGCCTTTGTAAATTGTAA+TGG 0.444824 tig0021940:+49553 Msa1395430:exon
AGCTAATAACTGTGGAAGAC+TGG 0.446448 tig0021940:-49594 None:intergenic
CATCCGGATTACTGTATCTC+GGG 0.450640 tig0021940:+47026 Msa1395430:CDS
TCGAAGTGTGTTCCATATAG+TGG 0.454279 tig0021940:-44221 None:intergenic
TCTATAGATGAGATCCTAAT+GGG 0.454312 tig0021940:-49803 None:intergenic
AGGAAGTTTATGTTCTCCTT+CGG 0.456217 tig0021940:-49295 None:intergenic
TAAGTGACATTTGAATTTGA+TGG 0.457442 tig0021940:-44131 None:intergenic
TTTAGCGGCGGGGTTTACTT+TGG 0.458274 tig0021940:+44421 Msa1395430:CDS
AACCTTGCAGATTGAGTAGC+AGG 0.458482 tig0021940:-49699 None:intergenic
TGATGGAATTGATGGAGATA+TGG 0.459102 tig0021940:-43935 None:intergenic
CATAAACTTCCTAGCATCAA+TGG 0.460567 tig0021940:+49306 Msa1395430:CDS
AGACCTCATTAGCTTTGCTT+CGG 0.467947 tig0021940:+47003 Msa1395430:CDS
TATATTTGTTGCGACGATGA+TGG 0.468011 tig0021940:-43952 None:intergenic
AAATGATACTCTCTCGGAAC+GGG 0.469991 tig0021940:+49505 Msa1395430:CDS
CCATTTCAAATGGAAGAGAC+AGG 0.470023 tig0021940:-44029 None:intergenic
GGTTGCGAGAGATTGTAATA+GGG 0.471213 tig0021940:-44200 None:intergenic
CAATGGAAGTGGAAACTTGA+AGG 0.473142 tig0021940:+49323 Msa1395430:CDS
GCGCTTGCCGCTATATTAAT+CGG 0.475453 tig0021940:+44250 Msa1395430:CDS
GGATGGGTCGTTCACTTCAA+AGG 0.475754 tig0021940:+46523 Msa1395430:CDS
CGTATACTGTGTGCCTTTGA+CGG 0.479382 tig0021940:-43812 None:intergenic
CTTCCTAGCATCAATGGAAG+TGG 0.493075 tig0021940:+49312 Msa1395430:CDS
GAGTAGCAGGATAGTATCAA+TGG 0.493646 tig0021940:-49686 None:intergenic
CAGTTCCATCACCGAGTCCT+GGG 0.494367 tig0021940:+44362 Msa1395430:CDS
TTACTTTGGACCTGCTGTTG+GGG 0.494918 tig0021940:+44435 Msa1395430:CDS
AGTTGAGGATTATATACTAA+TGG 0.495770 tig0021940:+49638 Msa1395430:three_prime_UTR
CACAGTTATTAGCTGAACTT+GGG 0.497149 tig0021940:+49603 Msa1395430:three_prime_UTR
ATTTACAAAGGCCGCAAAAG+TGG 0.500444 tig0021940:-49545 None:intergenic
GGTTTGAGTTACATATTGAC+AGG 0.505076 tig0021940:+46591 Msa1395430:CDS
GCAGCATCTGGAGGTAGAAT+GGG 0.505661 tig0021940:+44307 Msa1395430:CDS
GAATTGGAAGTTATTGAAGA+GGG 0.510110 tig0021940:-44172 None:intergenic
GAAGAAATGAACCCTGATGA+TGG 0.517675 tig0021940:-43845 None:intergenic
AACGGAGAAGGCCCATAATA+CGG 0.518903 tig0021940:-44400 None:intergenic
TAATTACTTGCAGGCAGTTG+AGG 0.519740 tig0021940:+49460 Msa1395430:intron
CGAGAAGCCAGAGATCTAAT+GGG 0.521062 tig0021940:+47685 Msa1395430:CDS
ATTAATATAGCGGCAAGCGC+GGG 0.526515 tig0021940:-44247 None:intergenic
TATGGGCCTTCTCCGTTTAG+CGG 0.528018 tig0021940:+44406 Msa1395430:CDS
GAGTAAGAAAACCCAGGACT+CGG 0.528838 tig0021940:-44373 None:intergenic
TGGGGATATTGATTAATTGG+AGG 0.529470 tig0021940:-43883 None:intergenic
TCTTGTAGGTTGGTTTGTTG+GGG 0.534202 tig0021940:+46502 Msa1395430:intron
ATACAATCCAAACACGTCCT+TGG 0.537594 tig0021940:+44285 Msa1395430:CDS
AAGAAATGAACCCTGATGAT+GGG 0.538441 tig0021940:-43844 None:intergenic
TTTCCACTTCCATTGATGCT+AGG 0.543766 tig0021940:-49315 None:intergenic
CCAACTCCAACCCCAACAGC+AGG 0.545304 tig0021940:-44445 None:intergenic
ATTAAATTGAATTGAAAATG+GGG 0.545365 tig0021940:-43901 None:intergenic
TCAAAACGATGGGCCGTCAA+AGG 0.545399 tig0021940:+43799 Msa1395430:five_prime_UTR
GCCTTCTCCGTTTAGCGGCG+GGG 0.547880 tig0021940:+44411 Msa1395430:CDS
AAATGAAAATGATACTCTCT+CGG 0.552119 tig0021940:+49499 Msa1395430:CDS
TTATCTGCTGTTGAATCCGG+TGG 0.553590 tig0021940:+49896 Msa1395430:three_prime_UTR
TCAACGTTAACAACATAAAG+AGG 0.553658 tig0021940:+47655 Msa1395430:CDS
CAAAGTGGTGGACATGGTCA+TGG 0.555256 tig0021940:-43996 None:intergenic
ATAAAACGGGGTATAGAAGA+AGG 0.555616 tig0021940:+47570 Msa1395430:CDS
TTTCTTTCTGATCGTGATGA+GGG 0.556740 tig0021940:+44529 Msa1395430:CDS
TACCCCGAGATACAGTAATC+CGG 0.558063 tig0021940:-47029 None:intergenic
TAGTAACAAAGTGGTGGACA+TGG 0.559325 tig0021940:-44002 None:intergenic
ACCCCGCCGCTAAACGGAGA+AGG 0.560494 tig0021940:-44412 None:intergenic
GATGGGTCGTTCACTTCAAA+GGG 0.562374 tig0021940:+46524 Msa1395430:CDS
ACAATCTTGGCTGCTGCCGA+AGG 0.564362 tig0021940:+49279 Msa1395430:CDS
AGATGAGGTTTCAAAACGAT+GGG 0.567231 tig0021940:+43789 Msa1395430:five_prime_UTR
ATGCCGAAGCAAAGCTAATG+AGG 0.567725 tig0021940:-47006 None:intergenic
TCTACCTCCAGATGCTGCCA+AGG 0.571275 tig0021940:-44302 None:intergenic
GAAAACCCAGGACTCGGTGA+TGG 0.571859 tig0021940:-44367 None:intergenic
ATTGGAAGTTATTGAAGAGG+GGG 0.573267 tig0021940:-44170 None:intergenic
TGAATTGGAAGTTATTGAAG+AGG 0.578390 tig0021940:-44173 None:intergenic
AATTACCTGAAGCTTGAGTA+CGG 0.580346 tig0021940:-44581 None:intergenic
TAAAACGGGGTATAGAAGAA+GGG 0.585010 tig0021940:+47571 Msa1395430:CDS
CTTACTAATAATTTGCTCGA+AGG 0.586071 tig0021940:-49372 None:intergenic
AATTGGAAGTTATTGAAGAG+GGG 0.587351 tig0021940:-44171 None:intergenic
TTATGAGATGAGATGAGATG+AGG 0.588614 tig0021940:+43774 Msa1395430:five_prime_UTR
GGGTTGTGATTGCGTAGTTG+AGG 0.592820 tig0021940:+49623 Msa1395430:three_prime_UTR
CAACTTTCAATTGAAGAGCG+AGG 0.593938 tig0021940:+47609 Msa1395430:CDS
GGGCCTTCTCCGTTTAGCGG+CGG 0.595463 tig0021940:+44409 Msa1395430:CDS
GAGTGCGAGGAAAATAAGAT+TGG 0.596892 tig0021940:-44057 None:intergenic
AAAATGATACTCTCTCGGAA+CGG 0.598062 tig0021940:+49504 Msa1395430:CDS
TTTACAAAGGCCGCAAAAGT+GGG 0.602051 tig0021940:-49544 None:intergenic
TAGAATTCCGATTAATATAG+CGG 0.602152 tig0021940:-44257 None:intergenic
CATTTCAAATGGAAGAGACA+GGG 0.603035 tig0021940:-44028 None:intergenic
GAATTGATGGAGATATGGAA+TGG 0.604965 tig0021940:-43930 None:intergenic
GATGGAGATATGGAATGGAA+TGG 0.606050 tig0021940:-43925 None:intergenic
AAAATTTGATGAAGAGACGC+TGG 0.618378 tig0021940:+47632 Msa1395430:CDS
GAGATGAGGTTTCAAAACGA+TGG 0.624856 tig0021940:+43788 Msa1395430:five_prime_UTR
GTTCAGCAATGAATACATAG+TGG 0.625878 tig0021940:+47707 Msa1395430:CDS
GCAGATACATCATCTCCAGA+AGG 0.629689 tig0021940:+46570 Msa1395430:CDS
GTTGTGAAGGTGTGAGTGCG+AGG 0.630964 tig0021940:-44070 None:intergenic
AAAACGGGGTATAGAAGAAG+GGG 0.631384 tig0021940:+47572 Msa1395430:CDS
CATGCCATTACAATTTACAA+AGG 0.632498 tig0021940:-49557 None:intergenic
GCATCTGGAGGTAGAATGGG+AGG 0.634245 tig0021940:+44310 Msa1395430:CDS
TATTGATATTGAAGTTGTGA+AGG 0.636338 tig0021940:-44083 None:intergenic
ACGTCCTTGGCAGCATCTGG+AGG 0.640164 tig0021940:+44298 Msa1395430:CDS
CCAAGTTCAGCTAATAACTG+TGG 0.642791 tig0021940:-49602 None:intergenic
GCACAAGTCTCCCATCATCA+GGG 0.648277 tig0021940:+43834 Msa1395430:five_prime_UTR
ATCCTGCTACTCAATCTGCA+AGG 0.663410 tig0021940:+49697 Msa1395430:three_prime_UTR
GGGCTCTAGTAACAAAGTGG+TGG 0.663644 tig0021940:-44008 None:intergenic
ATCCGGATTACTGTATCTCG+GGG 0.671601 tig0021940:+47027 Msa1395430:CDS
ACAGGGCTCTAGTAACAAAG+TGG 0.685325 tig0021940:-44011 None:intergenic
TCTGCAAGGTTATACAGCTG+CGG 0.685547 tig0021940:+49711 Msa1395430:three_prime_UTR
TTGTAGGTGGACATAAAACG+GGG 0.693677 tig0021940:+47558 Msa1395430:intron
TACCTGAAGCTTGAGTACGG+TGG 0.724017 tig0021940:-44578 None:intergenic
GGTGCAGAGTAAGAAAACCC+AGG 0.731550 tig0021940:-44379 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATTGAATTGAAAAT+GGG - tig0021940:43905-43924 None:intergenic 10.0%
!! CATTTCATTAATTAAAATTT+GGG + tig0021940:44933-44952 Msa1395430:intron 10.0%
!! ATTATTTACATTTCTTAAAT+AGG + tig0021940:46109-46128 Msa1395430:intron 10.0%
!!! AGTTTTAAGTATTATTATTT+AGG - tig0021940:47334-47353 None:intergenic 10.0%
!! AAAACTTAAAAAAATAACTT+TGG + tig0021940:47789-47808 Msa1395430:intron 10.0%
!! AAACTTAAAAAAATAACTTT+GGG + tig0021940:47790-47809 Msa1395430:intron 10.0%
!! ATTAAAAAATAGATATGAAT+CGG - tig0021940:48869-48888 None:intergenic 10.0%
!! ATCAAAAAAAAAAAAAAACA+GGG - tig0021940:48991-49010 None:intergenic 10.0%
!! AATCAAAAAAAAAAAAAAAC+AGG - tig0021940:48992-49011 None:intergenic 10.0%
!! AAATAAAAATTCAAAAAACA+GGG - tig0021940:49023-49042 None:intergenic 10.0%
!! ATTAAATTGAATTGAAAATG+GGG - tig0021940:43904-43923 None:intergenic 15.0%
!! GAATTAAATTGAATTGAAAA+TGG - tig0021940:43906-43925 None:intergenic 15.0%
!!! TTATTATGTGATTTTATGTT+GGG - tig0021940:44109-44128 None:intergenic 15.0%
!! GAAAAAGTTGTTAATATTAT+TGG + tig0021940:44705-44724 Msa1395430:intron 15.0%
!!! TACAAATGAATTAGTTATTT+TGG + tig0021940:44753-44772 Msa1395430:intron 15.0%
!! GCATTTCATTAATTAAAATT+TGG + tig0021940:44932-44951 Msa1395430:intron 15.0%
!! TTATTACAAAATATGCATTT+AGG - tig0021940:45592-45611 None:intergenic 15.0%
!! AGACATATAAATAATTCATA+AGG + tig0021940:45611-45630 Msa1395430:intron 15.0%
!!! AATTTTAAAAAATGAAGGTA+CGG + tig0021940:45760-45779 Msa1395430:intron 15.0%
!! TAAAATAACTAAGTAAAAGT+AGG + tig0021940:45959-45978 Msa1395430:intron 15.0%
!!! ATTTTGAATAACATAAAGTA+TGG + tig0021940:46154-46173 Msa1395430:intron 15.0%
!! CATATAGATTTATGAATAAA+AGG + tig0021940:46356-46375 Msa1395430:intron 15.0%
!! ATTTATGAATAAAAGGTTAT+TGG + tig0021940:46363-46382 Msa1395430:intron 15.0%
!! TTTATGAATAAAAGGTTATT+GGG + tig0021940:46364-46383 Msa1395430:intron 15.0%
!! ATGATAATCATAATACTTTA+AGG + tig0021940:46677-46696 Msa1395430:intron 15.0%
!! CAACATTATTTATTTATTAG+AGG + tig0021940:47403-47422 Msa1395430:intron 15.0%
!! TTATACTTACTTTATATTGT+TGG + tig0021940:47469-47488 Msa1395430:intron 15.0%
!!! TTTATAGATCATTTTTCTTT+TGG - tig0021940:47973-47992 None:intergenic 15.0%
!! AAAATGATCTATAAAAGATA+TGG + tig0021940:47978-47997 Msa1395430:intron 15.0%
!! AACAAGAAAACAAAAAAAAA+AGG + tig0021940:48220-48239 Msa1395430:intron 15.0%
!! ACAAGAAAACAAAAAAAAAA+GGG + tig0021940:48221-48240 Msa1395430:intron 15.0%
!! TTTGATTCATTAAAAAATGA+AGG + tig0021940:48309-48328 Msa1395430:intron 15.0%
!! AAATCACAAAACAAATATTT+GGG - tig0021940:48344-48363 None:intergenic 15.0%
!! TAAATCACAAAACAAATATT+TGG - tig0021940:48345-48364 None:intergenic 15.0%
!!! TGTTTTAATTTGTTCTTATA+TGG + tig0021940:48700-48719 Msa1395430:intron 15.0%
!! TTAAAAAATAGATATGAATC+GGG - tig0021940:48868-48887 None:intergenic 15.0%
!!! TATCTATTTTTTAATAACAC+AGG + tig0021940:48874-48893 Msa1395430:intron 15.0%
!! ACTAATCTTATAAATTCAAT+AGG + tig0021940:48939-48958 Msa1395430:intron 15.0%
!! CAAATAAAAATTCAAAAAAC+AGG - tig0021940:49024-49043 None:intergenic 15.0%
!!! CTGTTTTTTGAATTTTTATT+TGG + tig0021940:49022-49041 Msa1395430:intron 15.0%
!! AGAAAAATTGTGTAAAAAAA+AGG - tig0021940:49439-49458 None:intergenic 15.0%
!!! AGATAAATTTTTAAACAGAA+TGG - tig0021940:49882-49901 None:intergenic 15.0%
!!! AAAAAACCTTTTTTAAGTAT+TGG + tig0021940:49959-49978 Msa1395430:three_prime_UTR 15.0%
!!! GTTATTATGTGATTTTATGT+TGG - tig0021940:44110-44129 None:intergenic 20.0%
!! TACATTTATGATTATGATGA+TGG - tig0021940:44647-44666 None:intergenic 20.0%
!! GTTGTTAATATTATTGGAAA+TGG + tig0021940:44711-44730 Msa1395430:intron 20.0%
!!! ATGAATTAGTTATTTTGGAA+CGG + tig0021940:44758-44777 Msa1395430:intron 20.0%
!! ACATAATAAAAAATAGTGTG+AGG + tig0021940:44970-44989 Msa1395430:intron 20.0%
!! TATATGCCATAACAATTATA+GGG - tig0021940:45063-45082 None:intergenic 20.0%
!! AATCTTTCAAATAGATCAAT+AGG + tig0021940:45687-45706 Msa1395430:intron 20.0%
!!! ATTTTAAAAAATGAAGGTAC+GGG + tig0021940:45761-45780 Msa1395430:intron 20.0%
!!! CATCAAAAGAAAGATAATTT+TGG + tig0021940:45893-45912 Msa1395430:intron 20.0%
!!! CTTAGTTATTTTATCGTAAT+TGG - tig0021940:45952-45971 None:intergenic 20.0%
!!! TGCTAAATTGACTTTTTTAA+AGG + tig0021940:46184-46203 Msa1395430:intron 20.0%
!!! TATTCACTATTTTGAATCTT+TGG + tig0021940:46448-46467 Msa1395430:intron 20.0%
!!! AAAGTATTATGATTATCATG+TGG - tig0021940:46676-46695 None:intergenic 20.0%
!!! TTTAGTATTTTGTGTAATGA+AGG + tig0021940:46722-46741 Msa1395430:intron 20.0%
!!! AAAAATCTAGAACATTTATG+TGG - tig0021940:47134-47153 None:intergenic 20.0%
!!! TTATTTTCCAACATTTTTGT+AGG + tig0021940:47542-47561 Msa1395430:intron 20.0%
!!! GACATACAATTAATCATTTT+AGG + tig0021940:47875-47894 Msa1395430:intron 20.0%
!! TTTAGATATTGATGTCAATT+GGG - tig0021940:47933-47952 None:intergenic 20.0%
!! TAAAAGATATGGATAATGTT+TGG + tig0021940:47989-48008 Msa1395430:intron 20.0%
!! TTAACATGAATGATCTTATA+TGG - tig0021940:48123-48142 None:intergenic 20.0%
!! AATATCAAGAGAGAAAAATA+AGG - tig0021940:48781-48800 None:intergenic 20.0%
!! TATATATCAGATAACAATCT+TGG + tig0021940:49266-49285 Msa1395430:intron 20.0%
!!! ATTTTTCTATAATTACTTGC+AGG + tig0021940:49451-49470 Msa1395430:intron 20.0%
!! AAATGGGGATATTGATTAAT+TGG - tig0021940:43889-43908 None:intergenic 25.0%
! TATTGATATTGAAGTTGTGA+AGG - tig0021940:44086-44105 None:intergenic 25.0%
! TAAGTGACATTTGAATTTGA+TGG - tig0021940:44134-44153 None:intergenic 25.0%
!! TTGTAATAGGGATTTTGAAT+TGG - tig0021940:44191-44210 None:intergenic 25.0%
! TAGAATTCCGATTAATATAG+CGG - tig0021940:44260-44279 None:intergenic 25.0%
!! TTTTTATGCAAGCAAAATCA+AGG + tig0021940:44910-44929 Msa1395430:intron 25.0%
!! TAAAATTTGGGTTATACAGA+CGG + tig0021940:44945-44964 Msa1395430:intron 25.0%
! AAACAACCCTATAATTGTTA+TGG + tig0021940:45054-45073 Msa1395430:intron 25.0%
! GTATATGCCATAACAATTAT+AGG - tig0021940:45064-45083 None:intergenic 25.0%
! GAAAAGTAAACATAGTCTAA+TGG - tig0021940:45086-45105 None:intergenic 25.0%
! TTCAAATAGATCAATAGGTA+CGG + tig0021940:45692-45711 Msa1395430:intron 25.0%
!!! CGGCAAATTTTAAAAAATGA+AGG + tig0021940:45755-45774 Msa1395430:intron 25.0%
!! TTTTGATGAAAATAGTAGAG+GGG - tig0021940:45881-45900 None:intergenic 25.0%
!! CTTTTGATGAAAATAGTAGA+GGG - tig0021940:45882-45901 None:intergenic 25.0%
!! TCTTTTGATGAAAATAGTAG+AGG - tig0021940:45883-45902 None:intergenic 25.0%
! TAACTAAGTAAAAGTAGGTA+TGG + tig0021940:45964-45983 Msa1395430:intron 25.0%
! ATGTTATTCAAAATCCTTAC+AGG - tig0021940:46148-46167 None:intergenic 25.0%
!!! GTTTTTCTAGTAAATAAGTC+TGG + tig0021940:46216-46235 Msa1395430:intron 25.0%
! ATTATGATTATCATGTGGTT+AGG - tig0021940:46671-46690 None:intergenic 25.0%
!!! TCAGTACTTTTTCTTTTATC+TGG - tig0021940:47160-47179 None:intergenic 25.0%
!!! TAAAAGAAAAAGTACTGAAG+TGG + tig0021940:47162-47181 Msa1395430:intron 25.0%
!!! CTATATTTTTTGTGCCTTTT+TGG + tig0021940:47205-47224 Msa1395430:intron 25.0%
!! GAATTTTCTCAAAACCAAAA+AGG - tig0021940:47222-47241 None:intergenic 25.0%
! ATTTATTAGAGGTCATCATT+AGG + tig0021940:47414-47433 Msa1395430:intron 25.0%
! TTTATTAGAGGTCATCATTA+GGG + tig0021940:47415-47434 Msa1395430:intron 25.0%
! TATTGTTGGCATAGAAATAA+AGG + tig0021940:47483-47502 Msa1395430:intron 25.0%
! GAAACTGAGTTTATAGAAAT+TGG + tig0021940:47505-47524 Msa1395430:intron 25.0%
! TTTAAGTCTACATTGCATAA+AGG - tig0021940:47772-47791 None:intergenic 25.0%
! CTTTAGATATTGATGTCAAT+TGG - tig0021940:47934-47953 None:intergenic 25.0%
! ATATATCAAGCATATCAACA+AGG - tig0021940:48162-48181 None:intergenic 25.0%
! AACAAAAAAAAAAGGGAACA+AGG + tig0021940:48228-48247 Msa1395430:intron 25.0%
! TATCAAGGACAAAAAAGAAA+TGG - tig0021940:48495-48514 None:intergenic 25.0%
!! AAACAACTTTTTGTTCTGTT+TGG - tig0021940:48526-48545 None:intergenic 25.0%
!!! AGTTCTATTTTACTGATTGA+TGG + tig0021940:48617-48636 Msa1395430:intron 25.0%
! TATGTTAATCACCAATACTA+GGG - tig0021940:48834-48853 None:intergenic 25.0%
!!! AATAGTTTGCAAGTCATTTT+CGG + tig0021940:49401-49420 Msa1395430:intron 25.0%
!! AGTATCATTTTCATTTTGTG+GGG - tig0021940:49495-49514 None:intergenic 25.0%
!! GAGTATCATTTTCATTTTGT+GGG - tig0021940:49496-49515 None:intergenic 25.0%
!!! AGAGTATCATTTTCATTTTG+TGG - tig0021940:49497-49516 None:intergenic 25.0%
! AAATGAAAATGATACTCTCT+CGG + tig0021940:49499-49518 Msa1395430:CDS 25.0%
! AGTTGAGGATTATATACTAA+TGG + tig0021940:49638-49657 Msa1395430:three_prime_UTR 25.0%
! TGGACAATTATGTCAAATTA+AGG - tig0021940:49862-49881 None:intergenic 25.0%
! CAACTTCCAATACTTAAAAA+AGG - tig0021940:49968-49987 None:intergenic 25.0%
!! TGGTCATGGTTTTTCAATTT+TGG - tig0021940:43985-44004 None:intergenic 30.0%
ATTGGTTGTTCCATTTCAAA+TGG - tig0021940:44042-44061 None:intergenic 30.0%
AATTGGAAGTTATTGAAGAG+GGG - tig0021940:44174-44193 None:intergenic 30.0%
GAATTGGAAGTTATTGAAGA+GGG - tig0021940:44175-44194 None:intergenic 30.0%
TGAATTGGAAGTTATTGAAG+AGG - tig0021940:44176-44195 None:intergenic 30.0%
TGCTAAGATGAGAAATAAAC+TGG - tig0021940:44479-44498 None:intergenic 30.0%
! AGTTTATTTCTCATCTTAGC+AGG + tig0021940:44478-44497 Msa1395430:CDS 30.0%
!!! AATTAGTTATTTTGGAACGG+AGG + tig0021940:44761-44780 Msa1395430:intron 30.0%
!!! ATTAGTTATTTTGGAACGGA+GGG + tig0021940:44762-44781 Msa1395430:intron 30.0%
!!! ATTATAGGGTTGTTTTTTCC+AGG - tig0021940:45049-45068 None:intergenic 30.0%
GGCTTAAATTTCTGAACTAA+AGG + tig0021940:45128-45147 Msa1395430:intron 30.0%
ACTTAAGAAAGAGAATCCTA+GGG - tig0021940:45160-45179 None:intergenic 30.0%
! TATGTGACTTCTTCTTTTAG+TGG + tig0021940:45187-45206 Msa1395430:intron 30.0%
! ATGTGACTTCTTCTTTTAGT+GGG + tig0021940:45188-45207 Msa1395430:intron 30.0%
TGGCTTCGTCATATTTATTT+AGG + tig0021940:45276-45295 Msa1395430:intron 30.0%
GTGCTTTCAATAAATTGTGT+TGG + tig0021940:45456-45475 Msa1395430:intron 30.0%
TCAAATAGATCAATAGGTAC+GGG + tig0021940:45693-45712 Msa1395430:intron 30.0%
AAGTAAAAGTAGGTATGGTT+CGG + tig0021940:45969-45988 Msa1395430:intron 30.0%
AAAATCCTTACAGGATTAAC+AGG - tig0021940:46139-46158 None:intergenic 30.0%
AAGTAGCAATACATGATTTC+AGG - tig0021940:46310-46329 None:intergenic 30.0%
AACAAGATACTGAGAAATCT+TGG - tig0021940:46391-46410 None:intergenic 30.0%
!! TCACTATTTTGAATCTTTGG+TGG + tig0021940:46451-46470 Msa1395430:intron 30.0%
! AATGATAGTGTTGTTCTTGT+AGG + tig0021940:46488-46507 Msa1395430:intron 30.0%
AATATGTAACTCAAACCTTC+TGG - tig0021940:46588-46607 None:intergenic 30.0%
! GTTCCTAAACATGTGATTTT+TGG + tig0021940:46618-46637 Msa1395430:intron 30.0%
TGACCAAAAATCACATGTTT+AGG - tig0021940:46624-46643 None:intergenic 30.0%
TGATGTTGTGTAAACTATTG+TGG + tig0021940:46781-46800 Msa1395430:intron 30.0%
ATGCATGTAGAAAATGATGA+GGG + tig0021940:46827-46846 Msa1395430:intron 30.0%
ATCTATTCCAGCAATACAAT+TGG - tig0021940:47089-47108 None:intergenic 30.0%
! TTTTCCAACATTTTTGTAGG+TGG + tig0021940:47545-47564 Msa1395430:intron 30.0%
! TTTTGTAGGTGGACATAAAA+CGG + tig0021940:47556-47575 Msa1395430:intron 30.0%
TCAACGTTAACAACATAAAG+AGG + tig0021940:47655-47674 Msa1395430:CDS 30.0%
TAGTGGTATCATAACTATCT+TGG + tig0021940:47724-47743 Msa1395430:intron 30.0%
ATATAAACCTGGATGTTGAA+CGG - tig0021940:47910-47929 None:intergenic 30.0%
AAAAAACTGTTCATTCTCAG+TGG - tig0021940:48061-48080 None:intergenic 30.0%
!!! ACTGAGAATGAACAGTTTTT+TGG + tig0021940:48060-48079 Msa1395430:intron 30.0%
!!! CTGAGAATGAACAGTTTTTT+GGG + tig0021940:48061-48080 Msa1395430:intron 30.0%
TTATATGGCATGTGAAAAAG+TGG - tig0021940:48108-48127 None:intergenic 30.0%
AAACAATGATTGTTCCATTG+AGG + tig0021940:48184-48203 Msa1395430:intron 30.0%
AAAAAAAAAGGGAACAAGGA+AGG + tig0021940:48232-48251 Msa1395430:intron 30.0%
AAGGACAAAAAAGAAATGGT+TGG - tig0021940:48491-48510 None:intergenic 30.0%
TCAGTAAAATAGAACTACAG+AGG - tig0021940:48613-48632 None:intergenic 30.0%
AGTTACAATCCAAATTCACT+CGG - tig0021940:48739-48758 None:intergenic 30.0%
ATGTTAATCACCAATACTAG+GGG - tig0021940:48833-48852 None:intergenic 30.0%
CTATGTTAATCACCAATACT+AGG - tig0021940:48835-48854 None:intergenic 30.0%
!! AGTATTGGTGATTAACATAG+TGG + tig0021940:48835-48854 Msa1395430:intron 30.0%
AGATTAGTAATATGCCTGTT+TGG - tig0021940:48927-48946 None:intergenic 30.0%
! ATTTTCAGCAAACAGATTTG+CGG - tig0021940:49072-49091 None:intergenic 30.0%
!!! CTTCACTTTTTCAAGTGATT+AGG - tig0021940:49204-49223 None:intergenic 30.0%
GAACAACAAAGTTTAGAAGA+AGG - tig0021940:49245-49264 None:intergenic 30.0%
AAGGAAGCTTTACAAAAACT+TGG + tig0021940:49342-49361 Msa1395430:CDS 30.0%
!! TAATAATTTGCTCGAAGGAA+TGG - tig0021940:49370-49389 None:intergenic 30.0%
!! CTTACTAATAATTTGCTCGA+AGG - tig0021940:49375-49394 None:intergenic 30.0%
CATGCCATTACAATTTACAA+AGG - tig0021940:49560-49579 None:intergenic 30.0%
AGTTGTACATATTACCCATT+AGG + tig0021940:49789-49808 Msa1395430:three_prime_UTR 30.0%
TCTATAGATGAGATCCTAAT+GGG - tig0021940:49806-49825 None:intergenic 30.0%
TTCTATAGATGAGATCCTAA+TGG - tig0021940:49807-49826 None:intergenic 30.0%
AATTTATCTGCTGTTGAATC+CGG + tig0021940:49893-49912 Msa1395430:three_prime_UTR 30.0%
TTAGAGTTTGTGTGCATTAT+CGG + tig0021940:49923-49942 Msa1395430:three_prime_UTR 30.0%
TTATGAGATGAGATGAGATG+AGG + tig0021940:43774-43793 Msa1395430:five_prime_UTR 35.0%
AGATGAGGTTTCAAAACGAT+GGG + tig0021940:43789-43808 Msa1395430:five_prime_UTR 35.0%
AAGAAATGAACCCTGATGAT+GGG - tig0021940:43847-43866 None:intergenic 35.0%
! TGGGGATATTGATTAATTGG+AGG - tig0021940:43886-43905 None:intergenic 35.0%
GAATTGATGGAGATATGGAA+TGG - tig0021940:43933-43952 None:intergenic 35.0%
TGATGGAATTGATGGAGATA+TGG - tig0021940:43938-43957 None:intergenic 35.0%
! TATATTTGTTGCGACGATGA+TGG - tig0021940:43955-43974 None:intergenic 35.0%
CATTTCAAATGGAAGAGACA+GGG - tig0021940:44031-44050 None:intergenic 35.0%
ATTGGAAGTTATTGAAGAGG+GGG - tig0021940:44173-44192 None:intergenic 35.0%
! TTTTCTTTCTGATCGTGATG+AGG + tig0021940:44528-44547 Msa1395430:CDS 35.0%
TTTCTTTCTGATCGTGATGA+GGG + tig0021940:44529-44548 Msa1395430:CDS 35.0%
AATTACCTGAAGCTTGAGTA+CGG - tig0021940:44584-44603 None:intergenic 35.0%
GCAAGGAATAAAGAAAACAC+TGG - tig0021940:44797-44816 None:intergenic 35.0%
CAACACAAAAACATGAAGCA+TGG - tig0021940:44832-44851 None:intergenic 35.0%
!! CATGCTTCATGTTTTTGTGT+TGG + tig0021940:44830-44849 Msa1395430:intron 35.0%
GTCAATATTGCATACAACGA+TGG + tig0021940:45107-45126 Msa1395430:intron 35.0%
CACTTAAGAAAGAGAATCCT+AGG - tig0021940:45161-45180 None:intergenic 35.0%
! TCTTTTAGTGGGATTTACGT+TGG + tig0021940:45199-45218 Msa1395430:intron 35.0%
! TTTTTGCTTAGCCGAAGTTA+AGG + tig0021940:45481-45500 Msa1395430:intron 35.0%
! TTTTGCTTAGCCGAAGTTAA+GGG + tig0021940:45482-45501 Msa1395430:intron 35.0%
ACTATTTCCACCCTTAACTT+CGG - tig0021940:45495-45514 None:intergenic 35.0%
ATAGCCTCAACTCAATATGT+AGG + tig0021940:45652-45671 Msa1395430:intron 35.0%
! TTAGCCTACATATTGAGTTG+AGG - tig0021940:45659-45678 None:intergenic 35.0%
AAATTTGCCGTATTACGTAC+CGG - tig0021940:45745-45764 None:intergenic 35.0%
!! TCATATACTCTCTGAAGCAT+GGG - tig0021940:46054-46073 None:intergenic 35.0%
!! ATCATATACTCTCTGAAGCA+TGG - tig0021940:46055-46074 None:intergenic 35.0%
! AAATAAGTCTGGCTTAGCTT+TGG + tig0021940:46227-46246 Msa1395430:intron 35.0%
AGGTAAGGATGAAATAAGTC+AGG - tig0021940:46290-46309 None:intergenic 35.0%
! GCAATACATGATTTCAGGTA+AGG - tig0021940:46305-46324 None:intergenic 35.0%
! ATAGTGTTGTTCTTGTAGGT+TGG + tig0021940:46492-46511 Msa1395430:intron 35.0%
!! TTCTTGTAGGTTGGTTTGTT+GGG + tig0021940:46501-46520 Msa1395430:intron 35.0%
! GGTTTGAGTTACATATTGAC+AGG + tig0021940:46591-46610 Msa1395430:CDS 35.0%
GATGCATGTAGAAAATGATG+AGG + tig0021940:46826-46845 Msa1395430:intron 35.0%
TACCATTCCAATTGTATTGC+TGG + tig0021940:47079-47098 Msa1395430:intron 35.0%
TTCCAGCAATACAATTGGAA+TGG - tig0021940:47084-47103 None:intergenic 35.0%
ATGTCCACCTACAAAAATGT+TGG - tig0021940:47552-47571 None:intergenic 35.0%
TTTGTAGGTGGACATAAAAC+GGG + tig0021940:47557-47576 Msa1395430:intron 35.0%
ATAAAACGGGGTATAGAAGA+AGG + tig0021940:47570-47589 Msa1395430:CDS 35.0%
TAAAACGGGGTATAGAAGAA+GGG + tig0021940:47571-47590 Msa1395430:CDS 35.0%
AAAATTTGATGAAGAGACGC+TGG + tig0021940:47632-47651 Msa1395430:CDS 35.0%
GTTCAGCAATGAATACATAG+TGG + tig0021940:47707-47726 Msa1395430:CDS 35.0%
TGTCAATTGGGATATAAACC+TGG - tig0021940:47921-47940 None:intergenic 35.0%
TACTACTTTGTCTTCCTCAA+TGG - tig0021940:48201-48220 None:intergenic 35.0%
AACAAGGAAGGAAAGCAATA+TGG + tig0021940:48244-48263 Msa1395430:intron 35.0%
! GTGTTGCTCTTCAGAAAATT+AGG + tig0021940:48281-48300 Msa1395430:intron 35.0%
! GACTTTTGAATGTTGTGTTG+CGG - tig0021940:48459-48478 None:intergenic 35.0%
TGTTTGGTAGAGGATTATCA+AGG - tig0021940:48510-48529 None:intergenic 35.0%
! CTTTTTGTTCTGTTTGGTAG+AGG - tig0021940:48520-48539 None:intergenic 35.0%
TGAGTCTGATTACATTTGTC+TGG + tig0021940:48651-48670 Msa1395430:intron 35.0%
CTCTCTTGATATTTGTCTGA+TGG + tig0021940:48788-48807 Msa1395430:intron 35.0%
AAAATAGATATGAATCGGGC+AGG - tig0021940:48864-48883 None:intergenic 35.0%
GGACATAGATGCAGATTAAT+GGG - tig0021940:48906-48925 None:intergenic 35.0%
TGGACATAGATGCAGATTAA+TGG - tig0021940:48907-48926 None:intergenic 35.0%
! TTTTCAGCAAACAGATTTGC+GGG - tig0021940:49071-49090 None:intergenic 35.0%
!! TCAAGTATCGACAAACGATT+TGG + tig0021940:49108-49127 Msa1395430:intron 35.0%
TGAAAAAGTGAAGTTCCATG+AGG + tig0021940:49211-49230 Msa1395430:intron 35.0%
AGGAAGTTTATGTTCTCCTT+CGG - tig0021940:49298-49317 None:intergenic 35.0%
CATAAACTTCCTAGCATCAA+TGG + tig0021940:49306-49325 Msa1395430:CDS 35.0%
AAAATGATACTCTCTCGGAA+CGG + tig0021940:49504-49523 Msa1395430:CDS 35.0%
!! TTGAAGATTACCCACTTTTG+CGG + tig0021940:49534-49553 Msa1395430:CDS 35.0%
CACAGTTATTAGCTGAACTT+GGG + tig0021940:49603-49622 Msa1395430:three_prime_UTR 35.0%
ACACAATGTCACACTGATAT+TGG - tig0021940:49737-49756 None:intergenic 35.0%
! GTGACATTGTGTCACTATAA+AGG + tig0021940:49745-49764 Msa1395430:three_prime_UTR 35.0%
! CACAAACTCTAAAAATCCAC+CGG - tig0021940:49915-49934 None:intergenic 35.0%
GAGATGAGGTTTCAAAACGA+TGG + tig0021940:43788-43807 Msa1395430:five_prime_UTR 40.0%
GAAGAAATGAACCCTGATGA+TGG - tig0021940:43848-43867 None:intergenic 40.0%
GATGGAGATATGGAATGGAA+TGG - tig0021940:43928-43947 None:intergenic 40.0%
!! TAGTAACAAAGTGGTGGACA+TGG - tig0021940:44005-44024 None:intergenic 40.0%
CCATTTCAAATGGAAGAGAC+AGG - tig0021940:44032-44051 None:intergenic 40.0%
CCTGTCTCTTCCATTTGAAA+TGG + tig0021940:44029-44048 Msa1395430:CDS 40.0%
GAGTGCGAGGAAAATAAGAT+TGG - tig0021940:44060-44079 None:intergenic 40.0%
!! AAGAGGGGGTTTTGTGATTT+TGG - tig0021940:44159-44178 None:intergenic 40.0%
GGTTGCGAGAGATTGTAATA+GGG - tig0021940:44203-44222 None:intergenic 40.0%
TGGTTGCGAGAGATTGTAAT+AGG - tig0021940:44204-44223 None:intergenic 40.0%
AATCTCTCGCAACCACTATA+TGG + tig0021940:44209-44228 Msa1395430:CDS 40.0%
TCGAAGTGTGTTCCATATAG+TGG - tig0021940:44224-44243 None:intergenic 40.0%
ATACAATCCAAACACGTCCT+TGG + tig0021940:44285-44304 Msa1395430:CDS 40.0%
GAAGATCATCTTCGTCTTCT+AGG + tig0021940:44332-44351 Msa1395430:CDS 40.0%
TCTTACTCTGCACCGTATTA+TGG + tig0021940:44388-44407 Msa1395430:CDS 40.0%
CTTACTCTGCACCGTATTAT+GGG + tig0021940:44389-44408 Msa1395430:CDS 40.0%
TTTACTTTGGACCTGCTGTT+GGG + tig0021940:44434-44453 Msa1395430:CDS 40.0%
!!! AGGTTTCGCTGCTTTTGTTT+TGG + tig0021940:44498-44517 Msa1395430:CDS 40.0%
!!! GCTGCTTTTGTTTTGGTTTC+TGG + tig0021940:44505-44524 Msa1395430:CDS 40.0%
CATGGCAAATACAAGAAGCA+AGG - tig0021940:44814-44833 None:intergenic 40.0%
TAGTGTGAGGAGAATACGAT+AGG + tig0021940:44983-45002 Msa1395430:intron 40.0%
AGTGTGAGGAGAATACGATA+GGG + tig0021940:44984-45003 Msa1395430:intron 40.0%
ATTTACGTTGGTCCTGCTTT+AGG + tig0021940:45211-45230 Msa1395430:intron 40.0%
TTTACGTTGGTCCTGCTTTA+GGG + tig0021940:45212-45231 Msa1395430:intron 40.0%
AACTGAGGTGAGAAAGAAAC+TGG - tig0021940:45257-45276 None:intergenic 40.0%
AGTTTCTTTCTCACCTCAGT+TGG + tig0021940:45256-45275 Msa1395430:intron 40.0%
AAATATGACGAAGCCAACTG+AGG - tig0021940:45272-45291 None:intergenic 40.0%
TAGGCTTCTAAGTTTCTTCC+AGG + tig0021940:45295-45314 Msa1395430:intron 40.0%
CTTCTAAGTTTCTTCCAGGT+TGG + tig0021940:45299-45318 Msa1395430:intron 40.0%
GTACATTATTCACACCAACC+TGG - tig0021940:45316-45335 None:intergenic 40.0%
GTTAAGGGTGGAAATAGTCT+AGG + tig0021940:45497-45516 Msa1395430:intron 40.0%
TAGATCAATAGGTACGGGTA+CGG + tig0021940:45698-45717 Msa1395430:intron 40.0%
!! ATTGGTGCCGCAAAAATGTA+CGG - tig0021940:45934-45953 None:intergenic 40.0%
GTTGTCCTGTTAATCCTGTA+AGG + tig0021940:46131-46150 Msa1395430:intron 40.0%
TAAGTCAGGCAATCCAACAA+AGG - tig0021940:46276-46295 None:intergenic 40.0%
!! GTTCTTGTAGGTTGGTTTGT+TGG + tig0021940:46500-46519 Msa1395430:intron 40.0%
!! TCTTGTAGGTTGGTTTGTTG+GGG + tig0021940:46502-46521 Msa1395430:intron 40.0%
CACTTCAAAGGGATCTCAAT+AGG + tig0021940:46535-46554 Msa1395430:CDS 40.0%
!! AGACCTCATTAGCTTTGCTT+CGG + tig0021940:47003-47022 Msa1395430:CDS 40.0%
TTGTAGGTGGACATAAAACG+GGG + tig0021940:47558-47577 Msa1395430:intron 40.0%
AAAACGGGGTATAGAAGAAG+GGG + tig0021940:47572-47591 Msa1395430:CDS 40.0%
CAACTTTCAATTGAAGAGCG+AGG + tig0021940:47609-47628 Msa1395430:CDS 40.0%
AGCACAAGTTAACCTGTTCT+AGG + tig0021940:47842-47861 Msa1395430:intron 40.0%
! TCTAGTTTCATGCCTAGAAC+AGG - tig0021940:47857-47876 None:intergenic 40.0%
CATTCTCAGTGGAATGCATT+AGG - tig0021940:48050-48069 None:intergenic 40.0%
TGAAAAAGTGGCTAGTGGAA+AGG - tig0021940:48096-48115 None:intergenic 40.0%
ATCTGCATCTATGTCCAAAC+AGG + tig0021940:48910-48929 Msa1395430:intron 40.0%
TTTCAGCAAACAGATTTGCG+GGG - tig0021940:49070-49089 None:intergenic 40.0%
AAAGTGAAGTTCCATGAGGA+CGG + tig0021940:49215-49234 Msa1395430:intron 40.0%
TTTCCACTTCCATTGATGCT+AGG - tig0021940:49318-49337 None:intergenic 40.0%
CAATGGAAGTGGAAACTTGA+AGG + tig0021940:49323-49342 Msa1395430:CDS 40.0%
TAATTACTTGCAGGCAGTTG+AGG + tig0021940:49460-49479 Msa1395430:intron 40.0%
AAATGATACTCTCTCGGAAC+GGG + tig0021940:49505-49524 Msa1395430:CDS 40.0%
TTTACAAAGGCCGCAAAAGT+GGG - tig0021940:49547-49566 None:intergenic 40.0%
ATTTACAAAGGCCGCAAAAG+TGG - tig0021940:49548-49567 None:intergenic 40.0%
GCGGCCTTTGTAAATTGTAA+TGG + tig0021940:49553-49572 Msa1395430:exon 40.0%
AGCTAATAACTGTGGAAGAC+TGG - tig0021940:49597-49616 None:intergenic 40.0%
CCAAGTTCAGCTAATAACTG+TGG - tig0021940:49605-49624 None:intergenic 40.0%
CCACAGTTATTAGCTGAACT+TGG + tig0021940:49602-49621 Msa1395430:three_prime_UTR 40.0%
GAGTAGCAGGATAGTATCAA+TGG - tig0021940:49689-49708 None:intergenic 40.0%
CGTATACTGTGTGCCTTTGA+CGG - tig0021940:43815-43834 None:intergenic 45.0%
!! TGCGACGATGATGGAATTGA+TGG - tig0021940:43946-43965 None:intergenic 45.0%
! ACAGGGCTCTAGTAACAAAG+TGG - tig0021940:44014-44033 None:intergenic 45.0%
ATTAATATAGCGGCAAGCGC+GGG - tig0021940:44250-44269 None:intergenic 45.0%
GATTAATATAGCGGCAAGCG+CGG - tig0021940:44251-44270 None:intergenic 45.0%
GCGCTTGCCGCTATATTAAT+CGG + tig0021940:44250-44269 Msa1395430:CDS 45.0%
GAGTAAGAAAACCCAGGACT+CGG - tig0021940:44376-44395 None:intergenic 45.0%
AACGGAGAAGGCCCATAATA+CGG - tig0021940:44403-44422 None:intergenic 45.0%
GTTTACTTTGGACCTGCTGT+TGG + tig0021940:44433-44452 Msa1395430:CDS 45.0%
TTACTTTGGACCTGCTGTTG+GGG + tig0021940:44435-44454 Msa1395430:CDS 45.0%
!! GCAAGAGCACTGCTATTTGT+TGG + tig0021940:45020-45039 Msa1395430:intron 45.0%
GAACTAAAGGCTAATGCCCT+AGG + tig0021940:45141-45160 Msa1395430:intron 45.0%
ATATGCATGGTGGCTCTCAA+TGG - tig0021940:45345-45364 None:intergenic 45.0%
TAAGCGAAGCATATGCATGG+TGG - tig0021940:45355-45374 None:intergenic 45.0%
CCATAAGCGAAGCATATGCA+TGG - tig0021940:45358-45377 None:intergenic 45.0%
CCATGCATATGCTTCGCTTA+TGG + tig0021940:45355-45374 Msa1395430:intron 45.0%
AGGGTGGAAATAGTCTAGGT+TGG + tig0021940:45501-45520 Msa1395430:intron 45.0%
! TGGAAATAGTCTAGGTTGGC+CGG + tig0021940:45505-45524 Msa1395430:intron 45.0%
AACTCAGGTCTACCAAATCC+CGG - tig0021940:45527-45546 None:intergenic 45.0%
! TGGTAGACCTGAGTTTGTTC+AGG + tig0021940:45532-45551 Msa1395430:intron 45.0%
! GGTAGACCTGAGTTTGTTCA+GGG + tig0021940:45533-45552 Msa1395430:intron 45.0%
GCAAGCTTAAGGCTTGAGTT+TGG + tig0021940:45558-45577 Msa1395430:intron 45.0%
AGCTTAAGGCTTGAGTTTGG+TGG + tig0021940:45561-45580 Msa1395430:intron 45.0%
!! ACTGGTACCGGTACGTAATA+CGG + tig0021940:45735-45754 Msa1395430:intron 45.0%
! AAATGAAGGTACGGGTACGT+TGG + tig0021940:45769-45788 Msa1395430:intron 45.0%
! TCAACGCCCGTACATTTTTG+CGG + tig0021940:45924-45943 Msa1395430:intron 45.0%
!! TTGGTGCCGCAAAAATGTAC+GGG - tig0021940:45933-45952 None:intergenic 45.0%
AAGCATGGGTACTCCAAACA+CGG - tig0021940:46040-46059 None:intergenic 45.0%
!! TCTGGCTTAGCTTTGGTTTG+AGG + tig0021940:46234-46253 Msa1395430:intron 45.0%
!! GCTTTGGTTTGAGGTAGACT+AGG + tig0021940:46243-46262 Msa1395430:intron 45.0%
! GTTTGAGGTAGACTAGGCTA+AGG + tig0021940:46249-46268 Msa1395430:intron 45.0%
ACTAGGCTAAGGACCTTTGT+TGG + tig0021940:46260-46279 Msa1395430:intron 45.0%
!! TAGGTTGGTTTGTTGGGGAT+GGG + tig0021940:46507-46526 Msa1395430:intron 45.0%
GATGGGTCGTTCACTTCAAA+GGG + tig0021940:46524-46543 Msa1395430:CDS 45.0%
GCAGATACATCATCTCCAGA+AGG + tig0021940:46570-46589 Msa1395430:CDS 45.0%
TAATGTAGCTGAAAGCTGCG+TGG + tig0021940:46936-46955 Msa1395430:intron 45.0%
AATGAGGTCTCTGCAACAGA+AGG - tig0021940:46993-47012 None:intergenic 45.0%
ATGCCGAAGCAAAGCTAATG+AGG - tig0021940:47009-47028 None:intergenic 45.0%
!! ATTAGCTTTGCTTCGGCATC+CGG + tig0021940:47010-47029 Msa1395430:CDS 45.0%
GCATCCGGATTACTGTATCT+CGG + tig0021940:47025-47044 Msa1395430:CDS 45.0%
CATCCGGATTACTGTATCTC+GGG + tig0021940:47026-47045 Msa1395430:CDS 45.0%
ATCCGGATTACTGTATCTCG+GGG + tig0021940:47027-47046 Msa1395430:CDS 45.0%
TACCCCGAGATACAGTAATC+CGG - tig0021940:47032-47051 None:intergenic 45.0%
CTGGAATAGATGACGTCTTG+TGG + tig0021940:47098-47117 Msa1395430:intron 45.0%
ACGAGAAGCCAGAGATCTAA+TGG + tig0021940:47684-47703 Msa1395430:CDS 45.0%
CGAGAAGCCAGAGATCTAAT+GGG + tig0021940:47685-47704 Msa1395430:CDS 45.0%
TGCTGAACCCATTAGATCTC+TGG - tig0021940:47695-47714 None:intergenic 45.0%
AAAAGTGGCTAGTGGAAAGG+TGG - tig0021940:48093-48112 None:intergenic 45.0%
GCATGTGAAAAAGTGGCTAG+TGG - tig0021940:48101-48120 None:intergenic 45.0%
AAGAGCAACACAGATGAGAG+AGG - tig0021940:48272-48291 None:intergenic 45.0%
AGATGCGTTCCGAGTGAATT+TGG + tig0021940:48727-48746 Msa1395430:intron 45.0%
AAGAAGGTAAACCGTCCTCA+TGG - tig0021940:49229-49248 None:intergenic 45.0%
CTTCCTAGCATCAATGGAAG+TGG + tig0021940:49312-49331 Msa1395430:CDS 45.0%
ATCCTGCTACTCAATCTGCA+AGG + tig0021940:49697-49716 Msa1395430:three_prime_UTR 45.0%
AACCTTGCAGATTGAGTAGC+AGG - tig0021940:49702-49721 None:intergenic 45.0%
TCTGCAAGGTTATACAGCTG+CGG + tig0021940:49711-49730 Msa1395430:three_prime_UTR 45.0%
TTATCTGCTGTTGAATCCGG+TGG + tig0021940:49896-49915 Msa1395430:three_prime_UTR 45.0%
TCAAAACGATGGGCCGTCAA+AGG + tig0021940:43799-43818 Msa1395430:five_prime_UTR 50.0%
GCACAAGTCTCCCATCATCA+GGG + tig0021940:43834-43853 Msa1395430:five_prime_UTR 50.0%
!! CAAAGTGGTGGACATGGTCA+TGG - tig0021940:43999-44018 None:intergenic 50.0%
! GGGCTCTAGTAACAAAGTGG+TGG - tig0021940:44011-44030 None:intergenic 50.0%
GCAGCATCTGGAGGTAGAAT+GGG + tig0021940:44307-44326 Msa1395430:CDS 50.0%
GGTGCAGAGTAAGAAAACCC+AGG - tig0021940:44382-44401 None:intergenic 50.0%
TATGGGCCTTCTCCGTTTAG+CGG + tig0021940:44406-44425 Msa1395430:CDS 50.0%
AAGTAAACCCCGCCGCTAAA+CGG - tig0021940:44421-44440 None:intergenic 50.0%
TTTAGCGGCGGGGTTTACTT+TGG + tig0021940:44421-44440 Msa1395430:CDS 50.0%
GGTAGTGTTCTTACTGCTGC+TGG + tig0021940:44550-44569 Msa1395430:CDS 50.0%
AACCACCGTACTCAAGCTTC+AGG + tig0021940:44576-44595 Msa1395430:CDS 50.0%
TACCTGAAGCTTGAGTACGG+TGG - tig0021940:44581-44600 None:intergenic 50.0%
! ACTGCTATTTGTTGGTCGCC+TGG + tig0021940:45028-45047 Msa1395430:intron 50.0%
!! TCCTGCTTTAGGGTTCAGTG+AGG + tig0021940:45222-45241 Msa1395430:intron 50.0%
TCCTCACTGAACCCTAAAGC+AGG - tig0021940:45226-45245 None:intergenic 50.0%
TGCTTAGCCGAAGTTAAGGG+TGG + tig0021940:45485-45504 Msa1395430:intron 50.0%
! GGAAATAGTCTAGGTTGGCC+GGG + tig0021940:45506-45525 Msa1395430:intron 50.0%
TTGCGACCCTGAACAAACTC+AGG - tig0021940:45542-45561 None:intergenic 50.0%
TGTTCAGGGTCGCAAGCTTA+AGG + tig0021940:45547-45566 Msa1395430:intron 50.0%
TACCGGTACTTCTCCGTGTT+TGG + tig0021940:46024-46043 Msa1395430:intron 50.0%
! CTCCAAACACGGAGAAGTAC+CGG - tig0021940:46029-46048 None:intergenic 50.0%
GACAGTCATGTGTAGTGCAG+TGG - tig0021940:46419-46438 None:intergenic 50.0%
!! GTAGGTTGGTTTGTTGGGGA+TGG + tig0021940:46506-46525 Msa1395430:intron 50.0%
GGATGGGTCGTTCACTTCAA+AGG + tig0021940:46523-46542 Msa1395430:CDS 50.0%
CCTGGATGTTGAACGGTAAG+AGG - tig0021940:47903-47922 None:intergenic 50.0%
CCTCTTACCGTTCAACATCC+AGG + tig0021940:47900-47919 Msa1395430:intron 50.0%
CTCAGTGGAATGCATTAGGC+TGG - tig0021940:48046-48065 None:intergenic 50.0%
! TGCAGGCAGTTGAGGTGTTA+TGG + tig0021940:49468-49487 Msa1395430:intron 50.0%
GGGTTGTGATTGCGTAGTTG+AGG + tig0021940:49623-49642 Msa1395430:three_prime_UTR 50.0%
CGCACAAGTCTCCCATCATC+AGG + tig0021940:43833-43852 Msa1395430:five_prime_UTR 55.0%
! GTTGTGAAGGTGTGAGTGCG+AGG - tig0021940:44073-44092 None:intergenic 55.0%
GATGCTGCCAAGGACGTGTT+TGG - tig0021940:44295-44314 None:intergenic 55.0%
AACACGTCCTTGGCAGCATC+TGG + tig0021940:44295-44314 Msa1395430:CDS 55.0%
TCTACCTCCAGATGCTGCCA+AGG - tig0021940:44305-44324 None:intergenic 55.0%
GGCAGCATCTGGAGGTAGAA+TGG + tig0021940:44306-44325 Msa1395430:CDS 55.0%
GCATCTGGAGGTAGAATGGG+AGG + tig0021940:44310-44329 Msa1395430:CDS 55.0%
TCAGTTCCATCACCGAGTCC+TGG + tig0021940:44361-44380 Msa1395430:CDS 55.0%
CAGTTCCATCACCGAGTCCT+GGG + tig0021940:44362-44381 Msa1395430:CDS 55.0%
!! GAAAACCCAGGACTCGGTGA+TGG - tig0021940:44370-44389 None:intergenic 55.0%
TTTGGACCTGCTGTTGGGGT+TGG + tig0021940:44439-44458 Msa1395430:CDS 55.0%
! AGTCTAGGTTGGCCGGGATT+TGG + tig0021940:45512-45531 Msa1395430:intron 55.0%
ATAGGTACGGGTACGGTACC+CGG + tig0021940:45705-45724 Msa1395430:intron 55.0%
ACCGGTACCAGTACCCATAC+CGG - tig0021940:45727-45746 None:intergenic 55.0%
ACGAGTACCATACGCGTACC+CGG + tig0021940:46001-46020 Msa1395430:intron 55.0%
!! ACACGGAGAAGTACCGGTAC+CGG - tig0021940:46023-46042 None:intergenic 55.0%
GTTTGCGTCGCCCCTAGTAT+TGG + tig0021940:48820-48839 Msa1395430:intron 55.0%
ACAATCTTGGCTGCTGCCGA+AGG + tig0021940:49279-49298 Msa1395430:CDS 55.0%
ACGTCCTTGGCAGCATCTGG+AGG + tig0021940:44298-44317 Msa1395430:CDS 60.0%
CCAACTCCAACCCCAACAGC+AGG - tig0021940:44448-44467 None:intergenic 60.0%
CCTGCTGTTGGGGTTGGAGT+TGG + tig0021940:44445-44464 Msa1395430:CDS 60.0%
!! GTTGGGGTTGGAGTTGGTGC+TGG + tig0021940:44451-44470 Msa1395430:CDS 60.0%
TACGGGTACGGTACCCGGTA+TGG + tig0021940:45710-45729 Msa1395430:intron 60.0%
ACGGGTACGGTACCCGGTAT+GGG + tig0021940:45711-45730 Msa1395430:intron 60.0%
ACGGTACCCGGTATGGGTAC+TGG + tig0021940:45717-45736 Msa1395430:intron 60.0%
CCGGTACCAGTACCCATACC+GGG - tig0021940:45726-45745 None:intergenic 60.0%
!! CCCGGTATGGGTACTGGTAC+CGG + tig0021940:45723-45742 Msa1395430:intron 60.0%
ACCATACGCGTACCCGGTAC+CGG + tig0021940:46007-46026 Msa1395430:intron 60.0%
!! CACGGAGAAGTACCGGTACC+GGG - tig0021940:46022-46041 None:intergenic 60.0%
GGGCCTTCTCCGTTTAGCGG+CGG + tig0021940:44409-44428 Msa1395430:CDS 65.0%
GGCCTTCTCCGTTTAGCGGC+GGG + tig0021940:44410-44429 Msa1395430:CDS 65.0%
GCCTTCTCCGTTTAGCGGCG+GGG + tig0021940:44411-44430 Msa1395430:CDS 65.0%
ACCCCGCCGCTAAACGGAGA+AGG - tig0021940:44415-44434 None:intergenic 65.0%
! ACCGGTACCGGGTACGCGTA+TGG - tig0021940:46011-46030 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021940 gene 43764 50013 43764 ID=Msa1395430;Name=Msa1395430
tig0021940 mRNA 43764 50013 43764 ID=Msa1395430-mRNA-1;Parent=Msa1395430;Name=Msa1395430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=234|1|1|1|1|1|6|448|376
tig0021940 exon 43764 44597 43764 ID=Msa1395430-mRNA-1:exon:14859;Parent=Msa1395430-mRNA-1
tig0021940 exon 46510 46612 46510 ID=Msa1395430-mRNA-1:exon:14860;Parent=Msa1395430-mRNA-1
tig0021940 exon 47003 47058 47003 ID=Msa1395430-mRNA-1:exon:14861;Parent=Msa1395430-mRNA-1
tig0021940 exon 47564 47728 47564 ID=Msa1395430-mRNA-1:exon:14862;Parent=Msa1395430-mRNA-1
tig0021940 exon 49276 49389 49276 ID=Msa1395430-mRNA-1:exon:14863;Parent=Msa1395430-mRNA-1
tig0021940 exon 49473 50013 49473 ID=Msa1395430-mRNA-1:exon:14864;Parent=Msa1395430-mRNA-1
tig0021940 five_prime_UTR 43764 43997 43764 ID=Msa1395430-mRNA-1:five_prime_utr;Parent=Msa1395430-mRNA-1
tig0021940 CDS 43998 44597 43998 ID=Msa1395430-mRNA-1:cds;Parent=Msa1395430-mRNA-1
tig0021940 CDS 46510 46612 46510 ID=Msa1395430-mRNA-1:cds;Parent=Msa1395430-mRNA-1
tig0021940 CDS 47003 47058 47003 ID=Msa1395430-mRNA-1:cds;Parent=Msa1395430-mRNA-1
tig0021940 CDS 47564 47728 47564 ID=Msa1395430-mRNA-1:cds;Parent=Msa1395430-mRNA-1
tig0021940 CDS 49276 49389 49276 ID=Msa1395430-mRNA-1:cds;Parent=Msa1395430-mRNA-1
tig0021940 CDS 49473 49565 49473 ID=Msa1395430-mRNA-1:cds;Parent=Msa1395430-mRNA-1
tig0021940 three_prime_UTR 49566 50013 49566 ID=Msa1395430-mRNA-1:three_prime_utr;Parent=Msa1395430-mRNA-1
Gene Sequence

>Msa1395430

ATGACCATGTCCACCACTTTGTTACTAGAGCCCTGTCTCTTCCATTTGAAATGGAACAACCAATCTTATTTTCCTCGCACTCACACCTTCACAACTTCAATATCAATACCCAACATAAAATCACATAATAACACCATCAAATTCAAATGTCACTTAAACCAAAATCACAAAACCCCCTCTTCAATAACTTCCAATTCAAAATCCCTATTACAATCTCTCGCAACCACTATATGGAACACACTTCGAAAACCCGCGCTTGCCGCTATATTAATCGGAATTCTATTGACATACAATCCAAACACGTCCTTGGCAGCATCTGGAGGTAGAATGGGAGGAAGATCATCTTCGTCTTCTAGGAGTTATTCAGTTCCATCACCGAGTCCTGGGTTTTCTTACTCTGCACCGTATTATGGGCCTTCTCCGTTTAGCGGCGGGGTTTACTTTGGACCTGCTGTTGGGGTTGGAGTTGGTGCTGGTTCCAGTTTATTTCTCATCTTAGCAGGTTTCGCTGCTTTTGTTTTGGTTTCTGGTTTTCTTTCTGATCGTGATGAGGGTAGTGTTCTTACTGCTGCTGGAAAAACCACCGTACTCAAGCTTCAGGTTGGTTTGTTGGGGATGGGTCGTTCACTTCAAAGGGATCTCAATAGGATTGCAGAAGTTGCAGATACATCATCTCCAGAAGGTTTGAGTTACATATTGACAGAGACCTCATTAGCTTTGCTTCGGCATCCGGATTACTGTATCTCGGGGTACTCTTCTGTGGACATAAAACGGGGTATAGAAGAAGGGGAGAAACGTTTTAATCAACTTTCAATTGAAGAGCGAGGAAAATTTGATGAAGAGACGCTGGTCAACGTTAACAACATAAAGAGGCAAAGCACGAGAAGCCAGAGATCTAATGGGTTCAGCAATGAATACATAGTGATAACAATCTTGGCTGCTGCCGAAGGAGAACATAAACTTCCTAGCATCAATGGAAGTGGAAACTTGAAGGAAGCTTTACAAAAACTTGGATCCATTCCTTCGAGCAAATTATTAGCAGTTGAGGTGTTATGGACCCCACAAAATGAAAATGATACTCTCTCGGAACGGGAGTTACTTGAAGATTACCCACTTTTGCGGCCTTTGTAA

Protein sequence

>Msa1395430

MTMSTTLLLEPCLFHLKWNNQSYFPRTHTFTTSISIPNIKSHNNTIKFKCHLNQNHKTPSSITSNSKSLLQSLATTIWNTLRKPALAAILIGILLTYNPNTSLAASGGRMGGRSSSSSRSYSVPSPSPGFSYSAPYYGPSPFSGGVYFGPAVGVGVGAGSSLFLILAGFAAFVLVSGFLSDRDEGSVLTAAGKTTVLKLQVGLLGMGRSLQRDLNRIAEVADTSSPEGLSYILTETSLALLRHPDYCISGYSSVDIKRGIEEGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTRSQRSNGFSNEYIVITILAAAEGEHKLPSINGSGNLKEALQKLGSIPSSKLLAVEVLWTPQNENDTLSERELLEDYPLLRPL*