Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0594280 | 0.820460 | 6.780354e-53 | -8.615850e-47 |
| Msa0026910 | Msa0594280 | 0.801470 | 8.868007e-49 | -8.615850e-47 |
| Msa0075880 | Msa0594280 | 0.822346 | 2.488731e-53 | -8.615850e-47 |
| Msa0084380 | Msa0594280 | 0.810326 | 1.218898e-50 | -8.615850e-47 |
| Msa0095560 | Msa0594280 | 0.807966 | 3.903953e-50 | -8.615850e-47 |
| Msa0114060 | Msa0594280 | 0.801728 | 7.850186e-49 | -8.615850e-47 |
| Msa0114430 | Msa0594280 | 0.805856 | 1.090509e-49 | -8.615850e-47 |
| Msa0180500 | Msa0594280 | 0.807791 | 4.254265e-50 | -8.615850e-47 |
| Msa0188830 | Msa0594280 | 0.828030 | 1.127575e-54 | -8.615850e-47 |
| Msa0206010 | Msa0594280 | 0.805755 | 1.145118e-49 | -8.615850e-47 |
| Msa0210450 | Msa0594280 | 0.806779 | 6.967944e-50 | -8.615850e-47 |
| Msa0223010 | Msa0594280 | 0.814255 | 1.690567e-51 | -8.615850e-47 |
| Msa0373930 | Msa0594280 | 0.816631 | 5.006224e-52 | -8.615850e-47 |
| Msa0379640 | Msa0594280 | 0.801309 | 9.570313e-49 | -8.615850e-47 |
| Msa0440750 | Msa0594280 | 0.804249 | 2.365723e-49 | -8.615850e-47 |
| Msa0259370 | Msa0594280 | 0.806149 | 9.461680e-50 | -8.615850e-47 |
| Msa0290760 | Msa0594280 | 0.802932 | 4.435864e-49 | -8.615850e-47 |
| Msa0317510 | Msa0594280 | 0.801266 | 9.766609e-49 | -8.615850e-47 |
| Msa0326110 | Msa0594280 | 0.800807 | 1.212057e-48 | -8.615850e-47 |
| Msa0339620 | Msa0594280 | 0.809030 | 2.313805e-50 | -8.615850e-47 |
| Msa0345970 | Msa0594280 | 0.804656 | 1.945169e-49 | -8.615850e-47 |
| Msa0493630 | Msa0594280 | 0.808022 | 3.797943e-50 | -8.615850e-47 |
| Msa0545700 | Msa0594280 | 0.823771 | 1.157626e-53 | -8.615850e-47 |
| Msa0594280 | Msa0649110 | 0.818078 | 2.364749e-52 | -8.615850e-47 |
| Msa0594280 | Msa0657610 | 0.804363 | 2.239591e-49 | -8.615850e-47 |
| Msa0594280 | Msa0667050 | 0.803291 | 3.739460e-49 | -8.615850e-47 |
| Msa0594280 | Msa0669440 | 0.803690 | 3.091458e-49 | -8.615850e-47 |
| Msa0594280 | Msa0673460 | 0.803721 | 3.044895e-49 | -8.615850e-47 |
| Msa0594280 | Msa0688480 | 0.808726 | 2.687976e-50 | -8.615850e-47 |
| Msa0594280 | Msa0711790 | 0.805072 | 1.592568e-49 | -8.615850e-47 |
| Msa0594280 | Msa0724210 | 0.804455 | 2.142780e-49 | -8.615850e-47 |
| Msa0594280 | Msa0767760 | 0.823785 | 1.148898e-53 | -8.615850e-47 |
| Msa0594280 | Msa0773840 | 0.839865 | 1.227090e-57 | -8.615850e-47 |
| Msa0594280 | Msa0820850 | 0.835515 | 1.604785e-56 | -8.615850e-47 |
| Msa0594280 | Msa0832150 | 0.812600 | 3.907432e-51 | -8.615850e-47 |
| Msa0594280 | Msa0844450 | 0.807650 | 4.557904e-50 | -8.615850e-47 |
| Msa0594280 | Msa0861130 | 0.828878 | 7.035367e-55 | -8.615850e-47 |
| Msa0594280 | Msa0910000 | 0.807290 | 5.433092e-50 | -8.615850e-47 |
| Msa0594280 | Msa0925290 | 0.809746 | 1.624573e-50 | -8.615850e-47 |
| Msa0594280 | Msa0969520 | 0.811901 | 5.550858e-51 | -8.615850e-47 |
| Msa0594280 | Msa0973600 | 0.810321 | 1.221682e-50 | -8.615850e-47 |
| Msa0594280 | Msa1014540 | 0.803274 | 3.769341e-49 | -8.615850e-47 |
| Msa0594280 | Msa1030970 | 0.816751 | 4.706235e-52 | -8.615850e-47 |
| Msa0594280 | Msa1054990 | 0.817522 | 3.156495e-52 | -8.615850e-47 |
| Msa0594280 | Msa1075650 | 0.808371 | 3.200152e-50 | -8.615850e-47 |
| Msa0594280 | Msa1082500 | 0.805124 | 1.553418e-49 | -8.615850e-47 |
| Msa0594280 | Msa1117170 | 0.822042 | 2.926567e-53 | -8.615850e-47 |
| Msa0594280 | Msa1124540 | -0.803443 | 3.477707e-49 | -8.615850e-47 |
| Msa0594280 | Msa1152440 | 0.804904 | 1.726406e-49 | -8.615850e-47 |
| Msa0594280 | Msa1204530 | 0.818808 | 1.615473e-52 | -8.615850e-47 |
| Msa0594280 | Msa1233890 | 0.823224 | 1.554189e-53 | -8.615850e-47 |
| Msa0594280 | Msa1249490 | 0.807009 | 6.231857e-50 | -8.615850e-47 |
| Msa0594280 | Msa1250890 | 0.806526 | 7.883339e-50 | -8.615850e-47 |
| Msa0594280 | Msa1284680 | 0.813074 | 3.076387e-51 | -8.615850e-47 |
| Msa0594280 | Msa1287460 | 0.803737 | 3.021499e-49 | -8.615850e-47 |
| Msa0594280 | Msa1305190 | 0.804613 | 1.985981e-49 | -8.615850e-47 |
| Msa0594280 | Msa1305340 | 0.811119 | 8.212595e-51 | -8.615850e-47 |
| Msa0594280 | Msa1306850 | 0.805330 | 1.405966e-49 | -8.615850e-47 |
| Msa0594280 | Msa1327550 | 0.804011 | 2.650901e-49 | -8.615850e-47 |
| Msa0594280 | Msa1331000 | 0.818517 | 1.881397e-52 | -8.615850e-47 |
| Msa0594280 | Msa1357530 | 0.808918 | 2.445609e-50 | -8.615850e-47 |
| Msa0594280 | Msa1360060 | 0.810226 | 1.280661e-50 | -8.615850e-47 |
| Msa0594280 | Msa1364830 | 0.819048 | 1.424872e-52 | -8.615850e-47 |
| Msa0594280 | Msa1372760 | 0.838373 | 2.988322e-57 | -8.615850e-47 |
| Msa0594280 | Msa1373030 | 0.822306 | 2.541452e-53 | -8.615850e-47 |
| Msa0594280 | Msa1392260 | 0.822449 | 2.355194e-53 | -8.615850e-47 |
| Msa0594280 | Msa1397120 | 0.801611 | 8.297740e-49 | -8.615850e-47 |
| Msa0594280 | Msa1403480 | 0.801074 | 1.068664e-48 | -8.615850e-47 |
| Msa0594280 | Msa1411020 | 0.812847 | 3.450052e-51 | -8.615850e-47 |
| Msa0594280 | Msa1412640 | 0.819576 | 1.080251e-52 | -8.615850e-47 |
| Msa0594280 | Msa1420820 | 0.806026 | 1.004385e-49 | -8.615850e-47 |
| Msa0594280 | Msa1423390 | 0.800872 | 1.175567e-48 | -8.615850e-47 |
| Msa0594280 | Msa1424290 | 0.811995 | 5.295079e-51 | -8.615850e-47 |
| Msa0594280 | Msa1424450 | 0.809250 | 2.076282e-50 | -8.615850e-47 |
| Msa0594280 | Msa1427230 | 0.829052 | 6.387905e-55 | -8.615850e-47 |
| Msa0594280 | Msa1429900 | 0.814363 | 1.600765e-51 | -8.615850e-47 |
| Msa0594280 | Msa1430680 | 0.842488 | 2.507932e-58 | -8.615850e-47 |
| Msa0594280 | Msa1434350 | 0.809302 | 2.023813e-50 | -8.615850e-47 |
| Msa0594280 | Msa1439320 | 0.813310 | 2.730211e-51 | -8.615850e-47 |
| Msa0594280 | Msa1440370 | 0.801073 | 1.069617e-48 | -8.615850e-47 |
| Msa0594280 | Msa1440810 | 0.808947 | 2.410866e-50 | -8.615850e-47 |
| Msa0594280 | Msa1443850 | 0.810169 | 1.317708e-50 | -8.615850e-47 |
| Msa0594280 | Msa1453560 | 0.832151 | 1.113397e-55 | -8.615850e-47 |
| Msa0594280 | Msa1460830 | 0.820388 | 7.043821e-53 | -8.615850e-47 |
| Msa0594280 | Msa1466540 | 0.800815 | 1.207636e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAATATTATCCAATAAA+AGG | 0.260189 | 4_2:+21625846 | None:intergenic |
| CATCTTTGCTTCTGGCAAAA+TGG | 0.262684 | 4_2:-21628000 | Msa0594280:intron |
| ATTGATATGTTCTCTGCTTC+TGG | 0.272947 | 4_2:-21626262 | Msa0594280:three_prime_UTR |
| TACTGTAATGCAGAAGTAAA+TGG | 0.338645 | 4_2:+21625993 | None:intergenic |
| ACTGCACTCATCTTTGCTTC+TGG | 0.346245 | 4_2:-21628008 | Msa0594280:CDS |
| TTCAGATATCTCCTTTGTCT+TGG | 0.406113 | 4_2:+21626313 | None:intergenic |
| TTATTGGATAATATTTCAGT+GGG | 0.531295 | 4_2:-21625842 | None:intergenic |
| CTGAATTGATAACAAGGCAA+TGG | 0.554700 | 4_2:-21626295 | Msa0594280:exon |
| TTTATTGGATAATATTTCAG+TGG | 0.566837 | 4_2:-21625843 | Msa0594280:three_prime_UTR |
| GATTGTTCTAACAGGAGCCA+AGG | 0.576547 | 4_2:-21626663 | Msa0594280:intron |
| CAAAAGAGTTCGAAATTGCA+AGG | 0.579809 | 4_2:+21626079 | None:intergenic |
| CATTGGTAGTAAACAGACAT+TGG | 0.582259 | 4_2:+21628624 | None:intergenic |
| TTAGAATCCTGGTAGGAGGA+GGG | 0.600102 | 4_2:-21627846 | Msa0594280:intron |
| AGATATCTGAATTGATAACA+AGG | 0.631988 | 4_2:-21626301 | Msa0594280:exon |
| CTGTATATAAACCAAGACAA+AGG | 0.691790 | 4_2:-21626324 | Msa0594280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCATAATAATTATTACAT+TGG | + | chr4_2:21625860-21625879 | None:intergenic | 15.0% |
| !! | TTATTATTTACTTTGAATTC+TGG | - | chr4_2:21625884-21625903 | Msa0594280:three_prime_UTR | 15.0% |
| !!! | ATTTATTTTGGTTTAGTAAA+AGG | + | chr4_2:21626819-21626838 | None:intergenic | 15.0% |
| !! | ATACAAAAAATGTGTATATA+AGG | + | chr4_2:21627888-21627907 | None:intergenic | 15.0% |
| !! | CACAAAAAAATTTCAAAAAG+TGG | + | chr4_2:21626212-21626231 | None:intergenic | 20.0% |
| !!! | AATTTTTTTGTGTTTCTTTC+TGG | - | chr4_2:21626220-21626239 | Msa0594280:three_prime_UTR | 20.0% |
| !! | TTGTAGTCAAATAAAAAGAT+TGG | - | chr4_2:21626549-21626568 | Msa0594280:intron | 20.0% |
| !!! | TGTACTGTATCAATTTATTT+TGG | + | chr4_2:21626831-21626850 | None:intergenic | 20.0% |
| !!! | GTAAATTTTGAAAAATAAGC+AGG | + | chr4_2:21627123-21627142 | None:intergenic | 20.0% |
| !!! | AGTGTAAGCTATTTTATTTA+CGG | - | chr4_2:21627454-21627473 | Msa0594280:intron | 20.0% |
| !! | TGTGTATAAAATTATTACCT+TGG | + | chr4_2:21627821-21627840 | None:intergenic | 20.0% |
| !!! | TACACATTTTTTGTATTATC+AGG | - | chr4_2:21627892-21627911 | Msa0594280:intron | 20.0% |
| !! | AGAAGAAAAGAAAAAAAAAG+TGG | - | chr4_2:21628297-21628316 | Msa0594280:intron | 20.0% |
| !!! | AAACTGACTTAAAAATTGTA+AGG | + | chr4_2:21628419-21628438 | None:intergenic | 20.0% |
| !! | CTGAAATATTATCCAATAAA+AGG | + | chr4_2:21628621-21628640 | None:intergenic | 20.0% |
| ! | TATTGTTTCAACAGTCAATT+TGG | - | chr4_2:21625988-21626007 | Msa0594280:three_prime_UTR | 25.0% |
| !! | GAAAGTGAAAATTAACTTGA+TGG | - | chr4_2:21626175-21626194 | Msa0594280:three_prime_UTR | 25.0% |
| !! | TGATTTGGAATAACAAAAGA+GGG | + | chr4_2:21626326-21626345 | None:intergenic | 25.0% |
| !!! | TTGATTTGGAATAACAAAAG+AGG | + | chr4_2:21626327-21626346 | None:intergenic | 25.0% |
| !! | GTATTTGCAGAATATTGATT+TGG | + | chr4_2:21626341-21626360 | None:intergenic | 25.0% |
| !!! | TTGATTCTTTTTTAGAATCC+TGG | - | chr4_2:21626607-21626626 | Msa0594280:intron | 25.0% |
| ! | AGTTCTGCATAATAAACATA+CGG | + | chr4_2:21626666-21626685 | None:intergenic | 25.0% |
| ! | GTAAAAGGAACATTACATTA+CGG | + | chr4_2:21626804-21626823 | None:intergenic | 25.0% |
| !! | TTATGCTGTTCTAATTTTAC+TGG | - | chr4_2:21626923-21626942 | Msa0594280:intron | 25.0% |
| ! | TTTCAGTGAAGATAATCAAA+GGG | + | chr4_2:21627241-21627260 | None:intergenic | 25.0% |
| ! | ATTTCAGTGAAGATAATCAA+AGG | + | chr4_2:21627242-21627261 | None:intergenic | 25.0% |
| !! | ATATACTGAACTTGCTTATA+TGG | - | chr4_2:21627690-21627709 | Msa0594280:intron | 25.0% |
| !! | TATACTGAACTTGCTTATAT+GGG | - | chr4_2:21627691-21627710 | Msa0594280:intron | 25.0% |
| ! | AAAATTAGCAAGACAATCTT+CGG | + | chr4_2:21627769-21627788 | None:intergenic | 25.0% |
| ! | TTCGATGAAACTATAACAAT+CGG | + | chr4_2:21628032-21628051 | None:intergenic | 25.0% |
| !!! | GACGTGAATATTTTATTTTG+TGG | - | chr4_2:21628071-21628090 | Msa0594280:intron | 25.0% |
| !!! | TTTATTTTGTGGCAGATTTT+TGG | - | chr4_2:21628082-21628101 | Msa0594280:intron | 25.0% |
| !! | AGATATCTGAATTGATAACA+AGG | - | chr4_2:21628163-21628182 | Msa0594280:intron | 25.0% |
| !! | TTTTGATATTGTTATGTGAC+AGG | - | chr4_2:21628225-21628244 | Msa0594280:intron | 25.0% |
| !!! | TGAAAAAGATGATTTTGAAG+AGG | - | chr4_2:21628273-21628292 | Msa0594280:intron | 25.0% |
| !!! | AACACTCATGATTTTAAGTT+TGG | + | chr4_2:21628448-21628467 | None:intergenic | 25.0% |
| GCAATGGAAAAAGAAAACAT+GGG | + | chr4_2:21626146-21626165 | None:intergenic | 30.0% | |
| AGCAATGGAAAAAGAAAACA+TGG | + | chr4_2:21626147-21626166 | None:intergenic | 30.0% | |
| ! | GTTTTCTTTTTCCATTGCTT+TGG | - | chr4_2:21626148-21626167 | Msa0594280:three_prime_UTR | 30.0% |
| !!! | TTCTTTTTTAGAATCCTGGT+AGG | - | chr4_2:21626611-21626630 | Msa0594280:intron | 30.0% |
| ! | TTGATTTGATTCACTCTGTA+TGG | - | chr4_2:21626730-21626749 | Msa0594280:intron | 30.0% |
| ! | AAATTTTAAACTCCCAACCA+TGG | + | chr4_2:21626756-21626775 | None:intergenic | 30.0% |
| AATTGATACAGTACATGTGA+AGG | - | chr4_2:21626836-21626855 | Msa0594280:intron | 30.0% | |
| ! | CTAATTTTACTGGTATGACT+AGG | - | chr4_2:21626933-21626952 | Msa0594280:intron | 30.0% |
| TGCTATTAATGTCTCTCTAA+CGG | - | chr4_2:21627042-21627061 | Msa0594280:intron | 30.0% | |
| ATTCATCCTAATCAACTTTG+AGG | + | chr4_2:21627072-21627091 | None:intergenic | 30.0% | |
| ! | ATAAACTATGCCATTTGTGT+TGG | - | chr4_2:21627090-21627109 | Msa0594280:intron | 30.0% |
| AAGGAATCAACTACTAATCA+AGG | + | chr4_2:21627328-21627347 | None:intergenic | 30.0% | |
| ! | TGATTAGTAGTTGATTCCTT+CGG | - | chr4_2:21627328-21627347 | Msa0594280:intron | 30.0% |
| TTCAAGATTCAGAACATTGT+TGG | - | chr4_2:21627367-21627386 | Msa0594280:intron | 30.0% | |
| TTGTGTTAGAATGTAGATGA+TGG | - | chr4_2:21627593-21627612 | Msa0594280:intron | 30.0% | |
| !! | TTAGAATGTAGATGATGGAA+AGG | - | chr4_2:21627598-21627617 | Msa0594280:intron | 30.0% |
| !! | TAGAATGTAGATGATGGAAA+GGG | - | chr4_2:21627599-21627618 | Msa0594280:intron | 30.0% |
| !! | GTCTTGCTAATTTTTGTTTC+TGG | - | chr4_2:21627775-21627794 | Msa0594280:intron | 30.0% |
| ! | TATTTTCACCCTCAAAATCA+TGG | - | chr4_2:21627853-21627872 | Msa0594280:intron | 30.0% |
| AGTTCAGGAAAAATCAACAA+TGG | - | chr4_2:21627966-21627985 | Msa0594280:intron | 30.0% | |
| AGGAAAAATCAACAATGGTA+TGG | - | chr4_2:21627971-21627990 | Msa0594280:intron | 30.0% | |
| GGAAAAATCAACAATGGTAT+GGG | - | chr4_2:21627972-21627991 | Msa0594280:intron | 30.0% | |
| GGCAAAAAATGAATTTCTTG+CGG | - | chr4_2:21628103-21628122 | Msa0594280:intron | 30.0% | |
| CTGTATATAAACCAAGACAA+AGG | - | chr4_2:21628140-21628159 | Msa0594280:intron | 30.0% | |
| TACTGTAATGCAGAAGTAAA+TGG | + | chr4_2:21628474-21628493 | None:intergenic | 30.0% | |
| ! | TGACTTCTATCTCCTTTTAT+TGG | - | chr4_2:21628606-21628625 | Msa0594280:intron | 30.0% |
| TTCTGCAAGTAAACAGACAT+TGG | + | chr4_2:21625967-21625986 | None:intergenic | 35.0% | |
| AGTCAATTTGGACACTAAGT+TGG | - | chr4_2:21626000-21626019 | Msa0594280:three_prime_UTR | 35.0% | |
| TAATGCAGAGTATAATCCCA+AGG | - | chr4_2:21626051-21626070 | Msa0594280:intron | 35.0% | |
| CAAGAGATTAAACTTGCCTT+GGG | + | chr4_2:21626070-21626089 | None:intergenic | 35.0% | |
| TCAAGAGATTAAACTTGCCT+TGG | + | chr4_2:21626071-21626090 | None:intergenic | 35.0% | |
| !! | AAGATGAGTGCAGTTGTTTT+TGG | + | chr4_2:21626450-21626469 | None:intergenic | 35.0% |
| !! | GAAAAGCACTTATATGACAG+AGG | + | chr4_2:21626514-21626533 | None:intergenic | 35.0% |
| !!! | TTTTTTAGAATCCTGGTAGG+AGG | - | chr4_2:21626614-21626633 | Msa0594280:intron | 35.0% |
| AACATTACATTACGGACATG+AGG | + | chr4_2:21626796-21626815 | None:intergenic | 35.0% | |
| TATTAATGTCTCTCTAACGG+AGG | - | chr4_2:21627045-21627064 | Msa0594280:intron | 35.0% | |
| ! | AACCAAGCTTTTGGATGATA+CGG | + | chr4_2:21627189-21627208 | None:intergenic | 35.0% |
| !! | TAGCATTGAAACCAAGCTTT+TGG | + | chr4_2:21627198-21627217 | None:intergenic | 35.0% |
| AAAAGCTTGGTTTCAATGCT+AGG | - | chr4_2:21627197-21627216 | Msa0594280:intron | 35.0% | |
| TGGTTTCAATGCTAGGTTTA+AGG | - | chr4_2:21627204-21627223 | Msa0594280:intron | 35.0% | |
| ! | ATCGCTTGATGTGATTTGTA+TGG | - | chr4_2:21627495-21627514 | Msa0594280:intron | 35.0% |
| ! | TCGCTTGATGTGATTTGTAT+GGG | - | chr4_2:21627496-21627515 | Msa0594280:intron | 35.0% |
| GATTTGTATGGGGATAAGTA+TGG | - | chr4_2:21627507-21627526 | Msa0594280:intron | 35.0% | |
| CAATCTTCGGTTTCTTCATA+CGG | + | chr4_2:21627756-21627775 | None:intergenic | 35.0% | |
| TCTGGAAAGATTGTTCTAAC+AGG | - | chr4_2:21627793-21627812 | Msa0594280:intron | 35.0% | |
| TGAGGGTGAAAATAACAGAA+GGG | + | chr4_2:21627847-21627866 | None:intergenic | 35.0% | |
| TTGAGGGTGAAAATAACAGA+AGG | + | chr4_2:21627848-21627867 | None:intergenic | 35.0% | |
| ! | CTAGTGAACCATGATTTTGA+GGG | + | chr4_2:21627864-21627883 | None:intergenic | 35.0% |
| TTTGTATTATCAGGTGAGAG+AGG | - | chr4_2:21627901-21627920 | Msa0594280:intron | 35.0% | |
| ACTATAACAATCGGCATAGA+TGG | + | chr4_2:21628023-21628042 | None:intergenic | 35.0% | |
| TCACGTCAGTAAATCAATAG+TGG | + | chr4_2:21628058-21628077 | None:intergenic | 35.0% | |
| TTCAGATATCTCCTTTGTCT+TGG | + | chr4_2:21628154-21628173 | None:intergenic | 35.0% | |
| ! | CTGAATTGATAACAAGGCAA+TGG | - | chr4_2:21628169-21628188 | Msa0594280:intron | 35.0% |
| ATTGATATGTTCTCTGCTTC+TGG | - | chr4_2:21628202-21628221 | Msa0594280:intron | 35.0% | |
| CAAAAGAGTTCGAAATTGCA+AGG | + | chr4_2:21628388-21628407 | None:intergenic | 35.0% | |
| TATACTCTGCATTACGAGCT+TGG | + | chr4_2:21626045-21626064 | None:intergenic | 40.0% | |
| GGAAAAAGAAAACATGGGCA+AGG | + | chr4_2:21626141-21626160 | None:intergenic | 40.0% | |
| CACTTTCACTACCAAAGCAA+TGG | + | chr4_2:21626162-21626181 | None:intergenic | 40.0% | |
| ! | GTTTTGCTGCTGTCATTATG+AGG | - | chr4_2:21626415-21626434 | Msa0594280:intron | 40.0% |
| CATCTTTGCTTCTGGCAAAA+TGG | - | chr4_2:21626464-21626483 | Msa0594280:intron | 40.0% | |
| AAGCACTTATATGACAGAGG+TGG | + | chr4_2:21626511-21626530 | None:intergenic | 40.0% | |
| TGGTATGACTAGGTTTGTAC+TGG | - | chr4_2:21626943-21626962 | Msa0594280:intron | 40.0% | |
| GAGTGAGCAACAGTCTAAAT+TGG | - | chr4_2:21626972-21626991 | Msa0594280:intron | 40.0% | |
| AACAGTCTAAATTGGCAGCA+AGG | - | chr4_2:21626980-21626999 | Msa0594280:intron | 40.0% | |
| ! | CTATGCCATTTGTGTTGGAT+TGG | - | chr4_2:21627095-21627114 | Msa0594280:intron | 40.0% |
| ! | ACCAAGCTTTTGGATGATAC+GGG | + | chr4_2:21627188-21627207 | None:intergenic | 40.0% |
| GTGATGTCAAGTTCCCAATA+CGG | - | chr4_2:21627395-21627414 | Msa0594280:intron | 40.0% | |
| ! | CGCTTGATGTGATTTGTATG+GGG | - | chr4_2:21627497-21627516 | Msa0594280:intron | 40.0% |
| ! | CTGAACTTGCTTATATGGGA+TGG | - | chr4_2:21627695-21627714 | Msa0594280:intron | 40.0% |
| TTCATACGGTAGATTAACCC+AGG | + | chr4_2:21627742-21627761 | None:intergenic | 40.0% | |
| GAGGGTGAAAATAACAGAAG+GGG | + | chr4_2:21627846-21627865 | None:intergenic | 40.0% | |
| ! | CCTAGTGAACCATGATTTTG+AGG | + | chr4_2:21627865-21627884 | None:intergenic | 40.0% |
| CCTCAAAATCATGGTTCACT+AGG | - | chr4_2:21627862-21627881 | Msa0594280:intron | 40.0% | |
| CACAGGGTATATTTGCTCAA+AGG | + | chr4_2:21627939-21627958 | None:intergenic | 40.0% | |
| AAAAAGTGGCTAGAGCTAGA+TGG | - | chr4_2:21628311-21628330 | Msa0594280:intron | 40.0% | |
| ACTGCACTCATCTTTGCTTC+TGG | - | chr4_2:21626456-21626475 | Msa0594280:intron | 45.0% | |
| ! | TTTAGAATCCTGGTAGGAGG+AGG | - | chr4_2:21626617-21626636 | Msa0594280:intron | 45.0% |
| TTAGAATCCTGGTAGGAGGA+GGG | - | chr4_2:21626618-21626637 | Msa0594280:intron | 45.0% | |
| TGATTCACTCTGTATGGCCA+TGG | - | chr4_2:21626736-21626755 | Msa0594280:intron | 45.0% | |
| GTCTAAATTGGCAGCAAGGA+AGG | - | chr4_2:21626984-21627003 | Msa0594280:intron | 45.0% | |
| ! | GGAGGACCTCAAAGTTGATT+AGG | - | chr4_2:21627063-21627082 | Msa0594280:intron | 45.0% |
| AGGCTCCAATCCAACACAAA+TGG | + | chr4_2:21627103-21627122 | None:intergenic | 45.0% | |
| ! | TTCCTTCGGCTTTATGCTTC+AGG | - | chr4_2:21627342-21627361 | Msa0594280:intron | 45.0% |
| ATCCTGAAGCATAAAGCCGA+AGG | + | chr4_2:21627347-21627366 | None:intergenic | 45.0% | |
| TGTCAAGTTCCCAATACGGT+TGG | - | chr4_2:21627399-21627418 | Msa0594280:intron | 45.0% | |
| AAGTTCCCAATACGGTTGGA+GGG | - | chr4_2:21627403-21627422 | Msa0594280:intron | 45.0% | |
| AGGGTCTTGCATATTCCCAT+GGG | - | chr4_2:21627422-21627441 | Msa0594280:intron | 45.0% | |
| TACACTAGAGAAAGCCCCAT+GGG | + | chr4_2:21627440-21627459 | None:intergenic | 45.0% | |
| TTACACTAGAGAAAGCCCCA+TGG | + | chr4_2:21627441-21627460 | None:intergenic | 45.0% | |
| TCACATCAAGCGATCACGAA+GGG | + | chr4_2:21627489-21627508 | None:intergenic | 45.0% | |
| ATCACATCAAGCGATCACGA+AGG | + | chr4_2:21627490-21627509 | None:intergenic | 45.0% | |
| ! | TATGAACCTGAGCTGTTTCC+TGG | - | chr4_2:21627721-21627740 | Msa0594280:intron | 45.0% |
| ! | ATGAACCTGAGCTGTTTCCT+GGG | - | chr4_2:21627722-21627741 | Msa0594280:intron | 45.0% |
| ATTAACCCAGGAAACAGCTC+AGG | + | chr4_2:21627730-21627749 | None:intergenic | 45.0% | |
| GATTGTTCTAACAGGAGCCA+AGG | - | chr4_2:21627801-21627820 | Msa0594280:intron | 45.0% | |
| TCCTGAACTCAGTAAGCACA+GGG | + | chr4_2:21627955-21627974 | None:intergenic | 45.0% | |
| TTCCTGAACTCAGTAAGCAC+AGG | + | chr4_2:21627956-21627975 | None:intergenic | 45.0% | |
| TCACTCTGTATGGCCATGGT+TGG | - | chr4_2:21626740-21626759 | Msa0594280:intron | 50.0% | |
| CACTCTGTATGGCCATGGTT+GGG | - | chr4_2:21626741-21626760 | Msa0594280:intron | 50.0% | |
| GCCCGTATCATCCAAAAGCT+TGG | - | chr4_2:21627184-21627203 | Msa0594280:intron | 50.0% | |
| CAAGTTCCCAATACGGTTGG+AGG | - | chr4_2:21627402-21627421 | Msa0594280:intron | 50.0% | |
| CAAGACCCTCCAACCGTATT+GGG | + | chr4_2:21627411-21627430 | None:intergenic | 50.0% | |
| GAGGGTCTTGCATATTCCCA+TGG | - | chr4_2:21627421-21627440 | Msa0594280:intron | 50.0% | |
| GGGTCTTGCATATTCCCATG+GGG | - | chr4_2:21627423-21627442 | Msa0594280:intron | 50.0% | |
| ACCCTGTGCTTACTGAGTTC+AGG | - | chr4_2:21627951-21627970 | Msa0594280:intron | 50.0% | |
| CTAATGACCCTCCTCCTACC+AGG | + | chr4_2:21626628-21626647 | None:intergenic | 55.0% | |
| GCAAGACCCTCCAACCGTAT+TGG | + | chr4_2:21627412-21627431 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 21625843 | 21628643 | 21625843 | ID=Msa0594280;Name=Msa0594280 |
| chr4_2 | mRNA | 21625843 | 21628643 | 21625843 | ID=Msa0594280-mRNA-1;Parent=Msa0594280;Name=Msa0594280-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.14|0.37|0.62|0.85|0.75|8|425|60 |
| chr4_2 | exon | 21625843 | 21626035 | 21625843 | ID=Msa0594280-mRNA-1:exon:5999;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21626082 | 21626389 | 21626082 | ID=Msa0594280-mRNA-1:exon:5998;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21626664 | 21626671 | 21626664 | ID=Msa0594280-mRNA-1:exon:5997;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21627299 | 21627305 | 21627299 | ID=Msa0594280-mRNA-1:exon:5996;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21627847 | 21627853 | 21627847 | ID=Msa0594280-mRNA-1:exon:5995;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21627858 | 21627864 | 21627858 | ID=Msa0594280-mRNA-1:exon:5994;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21628001 | 21628072 | 21628001 | ID=Msa0594280-mRNA-1:exon:5993;Parent=Msa0594280-mRNA-1 |
| chr4_2 | exon | 21628638 | 21628643 | 21628638 | ID=Msa0594280-mRNA-1:exon:5992;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21628638 | 21628643 | 21628638 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21628001 | 21628072 | 21628001 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21627858 | 21627864 | 21627858 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21627847 | 21627853 | 21627847 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21627299 | 21627305 | 21627299 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21626664 | 21626671 | 21626664 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | CDS | 21626314 | 21626389 | 21626314 | ID=Msa0594280-mRNA-1:cds;Parent=Msa0594280-mRNA-1 |
| chr4_2 | three_prime_UTR | 21626082 | 21626313 | 21626082 | ID=Msa0594280-mRNA-1:three_prime_utr;Parent=Msa0594280-mRNA-1 |
| chr4_2 | three_prime_UTR | 21625843 | 21626035 | 21625843 | ID=Msa0594280-mRNA-1:three_prime_utr;Parent=Msa0594280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
