Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540870 | XP_013455414.1 | 98.988 | 494 | 5 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540870 | sp|Q8VYT5|FB254_ARATH | 59.118 | 499 | 176 | 8 | 1 | 494 | 1 | 476 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540870 | A0A072UUB0 | 98.988 | 494 | 5 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005710 | Msa0540870 | 0.801466 | 8.884117e-49 | -8.615850e-47 |
| Msa0024680 | Msa0540870 | 0.810298 | 1.235657e-50 | -8.615850e-47 |
| Msa0027540 | Msa0540870 | 0.811929 | 5.473308e-51 | -8.615850e-47 |
| Msa0029540 | Msa0540870 | -0.803802 | 2.929754e-49 | -8.615850e-47 |
| Msa0038350 | Msa0540870 | -0.813585 | 2.375628e-51 | -8.615850e-47 |
| Msa0075310 | Msa0540870 | 0.817957 | 2.517841e-52 | -8.615850e-47 |
| Msa0079040 | Msa0540870 | 0.800495 | 1.403349e-48 | -8.615850e-47 |
| Msa0094100 | Msa0540870 | 0.815066 | 1.118078e-51 | -8.615850e-47 |
| Msa0096670 | Msa0540870 | 0.806451 | 8.174829e-50 | -8.615850e-47 |
| Msa0101810 | Msa0540870 | -0.827050 | 1.937349e-54 | -8.615850e-47 |
| Msa0105420 | Msa0540870 | 0.824610 | 7.351697e-54 | -8.615850e-47 |
| Msa0120330 | Msa0540870 | 0.803645 | 3.158448e-49 | -8.615850e-47 |
| Msa0148780 | Msa0540870 | 0.811366 | 7.259205e-51 | -8.615850e-47 |
| Msa0168100 | Msa0540870 | 0.826629 | 2.443336e-54 | -8.615850e-47 |
| Msa0172350 | Msa0540870 | 0.809211 | 2.117021e-50 | -8.615850e-47 |
| Msa0174560 | Msa0540870 | 0.804886 | 1.741656e-49 | -8.615850e-47 |
| Msa0190830 | Msa0540870 | 0.819133 | 1.363071e-52 | -8.615850e-47 |
| Msa0193650 | Msa0540870 | 0.804234 | 2.382626e-49 | -8.615850e-47 |
| Msa0207000 | Msa0540870 | 0.822070 | 2.883873e-53 | -8.615850e-47 |
| Msa0217400 | Msa0540870 | 0.806763 | 7.025240e-50 | -8.615850e-47 |
| Msa0222920 | Msa0540870 | 0.825441 | 4.680821e-54 | -8.615850e-47 |
| Msa0233190 | Msa0540870 | 0.822166 | 2.740030e-53 | -8.615850e-47 |
| Msa0369570 | Msa0540870 | 0.808011 | 3.819453e-50 | -8.615850e-47 |
| Msa0393680 | Msa0540870 | 0.816058 | 6.725730e-52 | -8.615850e-47 |
| Msa0414950 | Msa0540870 | -0.801196 | 1.009252e-48 | -8.615850e-47 |
| Msa0423360 | Msa0540870 | -0.848667 | 5.296359e-60 | -8.615850e-47 |
| Msa0430820 | Msa0540870 | 0.801392 | 9.201470e-49 | -8.615850e-47 |
| Msa0436280 | Msa0540870 | -0.817704 | 2.872453e-52 | -8.615850e-47 |
| Msa0437710 | Msa0540870 | 0.808472 | 3.045743e-50 | -8.615850e-47 |
| Msa0459770 | Msa0540870 | -0.809472 | 1.860356e-50 | -8.615850e-47 |
| Msa0480980 | Msa0540870 | 0.812593 | 3.920694e-51 | -8.615850e-47 |
| Msa0257250 | Msa0540870 | 0.805033 | 1.622383e-49 | -8.615850e-47 |
| Msa0260820 | Msa0540870 | -0.833498 | 5.153533e-56 | -8.615850e-47 |
| Msa0264350 | Msa0540870 | 0.846992 | 1.532963e-59 | -8.615850e-47 |
| Msa0265820 | Msa0540870 | 0.816479 | 5.413943e-52 | -8.615850e-47 |
| Msa0266000 | Msa0540870 | -0.816273 | 6.021756e-52 | -8.615850e-47 |
| Msa0267760 | Msa0540870 | 0.815156 | 1.068031e-51 | -8.615850e-47 |
| Msa0269360 | Msa0540870 | 0.817436 | 3.301708e-52 | -8.615850e-47 |
| Msa0270270 | Msa0540870 | 0.804893 | 1.735589e-49 | -8.615850e-47 |
| Msa0274360 | Msa0540870 | 0.802596 | 5.205513e-49 | -8.615850e-47 |
| Msa0275670 | Msa0540870 | 0.810185 | 1.307137e-50 | -8.615850e-47 |
| Msa0283520 | Msa0540870 | 0.800406 | 1.462700e-48 | -8.615850e-47 |
| Msa0287000 | Msa0540870 | 0.809870 | 1.527869e-50 | -8.615850e-47 |
| Msa0296760 | Msa0540870 | 0.809025 | 2.319940e-50 | -8.615850e-47 |
| Msa0302450 | Msa0540870 | 0.809961 | 1.460641e-50 | -8.615850e-47 |
| Msa0304740 | Msa0540870 | 0.823748 | 1.172220e-53 | -8.615850e-47 |
| Msa0311580 | Msa0540870 | 0.825710 | 4.039889e-54 | -8.615850e-47 |
| Msa0313990 | Msa0540870 | 0.800995 | 1.109500e-48 | -8.615850e-47 |
| Msa0314210 | Msa0540870 | 0.817650 | 2.953529e-52 | -8.615850e-47 |
| Msa0320100 | Msa0540870 | 0.816298 | 5.942125e-52 | -8.615850e-47 |
| Msa0331590 | Msa0540870 | 0.814014 | 1.911189e-51 | -8.615850e-47 |
| Msa0333720 | Msa0540870 | -0.813017 | 3.167304e-51 | -8.615850e-47 |
| Msa0334350 | Msa0540870 | 0.806482 | 8.053604e-50 | -8.615850e-47 |
| Msa0335040 | Msa0540870 | 0.811518 | 6.725575e-51 | -8.615850e-47 |
| Msa0342200 | Msa0540870 | 0.846918 | 1.605937e-59 | -8.615850e-47 |
| Msa0349080 | Msa0540870 | 0.805985 | 1.024814e-49 | -8.615850e-47 |
| Msa0363310 | Msa0540870 | 0.806756 | 7.049346e-50 | -8.615850e-47 |
| Msa0490350 | Msa0540870 | 0.804212 | 2.407021e-49 | -8.615850e-47 |
| Msa0508200 | Msa0540870 | 0.810153 | 1.328130e-50 | -8.615850e-47 |
| Msa0509970 | Msa0540870 | 0.810188 | 1.304985e-50 | -8.615850e-47 |
| Msa0516320 | Msa0540870 | 0.800598 | 1.337258e-48 | -8.615850e-47 |
| Msa0521880 | Msa0540870 | 0.800270 | 1.559358e-48 | -8.615850e-47 |
| Msa0526710 | Msa0540870 | 0.814233 | 1.709604e-51 | -8.615850e-47 |
| Msa0535030 | Msa0540870 | 0.815456 | 9.161304e-52 | -8.615850e-47 |
| Msa0535060 | Msa0540870 | 0.818977 | 1.478551e-52 | -8.615850e-47 |
| Msa0540870 | Msa0548280 | -0.805635 | 1.213425e-49 | -8.615850e-47 |
| Msa0540870 | Msa0566030 | 0.818205 | 2.213815e-52 | -8.615850e-47 |
| Msa0540870 | Msa0577940 | -0.801038 | 1.087339e-48 | -8.615850e-47 |
| Msa0540870 | Msa0581760 | 0.831515 | 1.598046e-55 | -8.615850e-47 |
| Msa0540870 | Msa0604360 | 0.838567 | 2.663992e-57 | -8.615850e-47 |
| Msa0540870 | Msa0621590 | 0.808172 | 3.528833e-50 | -8.615850e-47 |
| Msa0540870 | Msa0621890 | 0.806170 | 9.367133e-50 | -8.615850e-47 |
| Msa0540870 | Msa0636180 | 0.870273 | 1.652287e-66 | -8.615850e-47 |
| Msa0540870 | Msa0645050 | 0.805673 | 1.191731e-49 | -8.615850e-47 |
| Msa0540870 | Msa0647130 | 0.839896 | 1.204687e-57 | -8.615850e-47 |
| Msa0540870 | Msa0657670 | 0.813448 | 2.546058e-51 | -8.615850e-47 |
| Msa0540870 | Msa0677400 | 0.948479 | 8.691335e-107 | -8.615850e-47 |
| Msa0540870 | Msa0719490 | -0.804123 | 2.511809e-49 | -8.615850e-47 |
| Msa0540870 | Msa0741900 | 0.806868 | 6.673621e-50 | -8.615850e-47 |
| Msa0540870 | Msa0754720 | -0.824406 | 8.213109e-54 | -8.615850e-47 |
| Msa0540870 | Msa0756630 | -0.834842 | 2.372308e-56 | -8.615850e-47 |
| Msa0540870 | Msa0802470 | -0.814710 | 1.341530e-51 | -8.615850e-47 |
| Msa0540870 | Msa0810020 | 0.806077 | 9.798980e-50 | -8.615850e-47 |
| Msa0540870 | Msa0829620 | 0.802877 | 4.555086e-49 | -8.615850e-47 |
| Msa0540870 | Msa0837990 | 0.816273 | 6.020959e-52 | -8.615850e-47 |
| Msa0540870 | Msa0844240 | 0.809008 | 2.339755e-50 | -8.615850e-47 |
| Msa0540870 | Msa0862100 | 0.809317 | 2.008225e-50 | -8.615850e-47 |
| Msa0540870 | Msa0867890 | 0.804709 | 1.896634e-49 | -8.615850e-47 |
| Msa0540870 | Msa0890250 | 0.818854 | 1.577421e-52 | -8.615850e-47 |
| Msa0540870 | Msa0891040 | 0.818967 | 1.486382e-52 | -8.615850e-47 |
| Msa0540870 | Msa0896220 | 0.801636 | 8.201999e-49 | -8.615850e-47 |
| Msa0540870 | Msa0936270 | 0.802724 | 4.898174e-49 | -8.615850e-47 |
| Msa0540870 | Msa0946120 | 0.820808 | 5.638817e-53 | -8.615850e-47 |
| Msa0540870 | Msa0981010 | 0.812444 | 4.226155e-51 | -8.615850e-47 |
| Msa0540870 | Msa0990960 | 0.810466 | 1.136565e-50 | -8.615850e-47 |
| Msa0540870 | Msa0996080 | 0.804598 | 2.000161e-49 | -8.615850e-47 |
| Msa0540870 | Msa1008490 | 0.841889 | 3.612450e-58 | -8.615850e-47 |
| Msa0540870 | Msa1009000 | 0.823605 | 1.265811e-53 | -8.615850e-47 |
| Msa0540870 | Msa1019020 | 0.822114 | 2.816481e-53 | -8.615850e-47 |
| Msa0540870 | Msa1020710 | 0.822279 | 2.578481e-53 | -8.615850e-47 |
| Msa0540870 | Msa1037000 | 0.802481 | 5.497887e-49 | -8.615850e-47 |
| Msa0540870 | Msa1040120 | 0.859565 | 3.789276e-63 | -8.615850e-47 |
| Msa0540870 | Msa1044340 | 0.817184 | 3.761447e-52 | -8.615850e-47 |
| Msa0540870 | Msa1069100 | 0.820738 | 5.851353e-53 | -8.615850e-47 |
| Msa0540870 | Msa1083410 | 0.834025 | 3.804926e-56 | -8.615850e-47 |
| Msa0540870 | Msa1098560 | 0.860917 | 1.477859e-63 | -8.615850e-47 |
| Msa0540870 | Msa1099030 | 0.811597 | 6.466920e-51 | -8.615850e-47 |
| Msa0540870 | Msa1104000 | 0.832071 | 1.165312e-55 | -8.615850e-47 |
| Msa0540870 | Msa1113200 | 0.800856 | 1.184310e-48 | -8.615850e-47 |
| Msa0540870 | Msa1128160 | 0.842655 | 2.264922e-58 | -8.615850e-47 |
| Msa0540870 | Msa1139810 | 0.805149 | 1.534730e-49 | -8.615850e-47 |
| Msa0540870 | Msa1143620 | 0.802077 | 6.657605e-49 | -8.615850e-47 |
| Msa0540870 | Msa1147570 | 0.835750 | 1.399415e-56 | -8.615850e-47 |
| Msa0540870 | Msa1165360 | 0.839124 | 1.911644e-57 | -8.615850e-47 |
| Msa0540870 | Msa1188420 | 0.804100 | 2.540544e-49 | -8.615850e-47 |
| Msa0540870 | Msa1217860 | 0.810892 | 9.193673e-51 | -8.615850e-47 |
| Msa0540870 | Msa1221560 | 0.834628 | 2.685514e-56 | -8.615850e-47 |
| Msa0540870 | Msa1222970 | 0.830010 | 3.735297e-55 | -8.615850e-47 |
| Msa0540870 | Msa1228210 | 0.820629 | 6.199879e-53 | -8.615850e-47 |
| Msa0540870 | Msa1237030 | 0.805822 | 1.108911e-49 | -8.615850e-47 |
| Msa0540870 | Msa1242230 | 0.819319 | 1.236333e-52 | -8.615850e-47 |
| Msa0540870 | Msa1242240 | 0.813538 | 2.433467e-51 | -8.615850e-47 |
| Msa0540870 | Msa1242390 | 0.809831 | 1.558159e-50 | -8.615850e-47 |
| Msa0540870 | Msa1264020 | 0.840334 | 9.254206e-58 | -8.615850e-47 |
| Msa0540870 | Msa1265960 | 0.814262 | 1.685312e-51 | -8.615850e-47 |
| Msa0540870 | Msa1267220 | 0.819235 | 1.291958e-52 | -8.615850e-47 |
| Msa0540870 | Msa1269580 | -0.804704 | 1.901470e-49 | -8.615850e-47 |
| Msa0540870 | Msa1271280 | 0.828086 | 1.093121e-54 | -8.615850e-47 |
| Msa0540870 | Msa1271300 | 0.819152 | 1.349175e-52 | -8.615850e-47 |
| Msa0540870 | Msa1280130 | 0.810500 | 1.117605e-50 | -8.615850e-47 |
| Msa0540870 | Msa1283840 | 0.805371 | 1.378955e-49 | -8.615850e-47 |
| Msa0540870 | Msa1284140 | 0.803493 | 3.396014e-49 | -8.615850e-47 |
| Msa0540870 | Msa1284260 | 0.828079 | 1.097389e-54 | -8.615850e-47 |
| Msa0540870 | Msa1284300 | 0.802538 | 5.350787e-49 | -8.615850e-47 |
| Msa0540870 | Msa1308380 | 0.803288 | 3.744897e-49 | -8.615850e-47 |
| Msa0540870 | Msa1312560 | 0.804841 | 1.779709e-49 | -8.615850e-47 |
| Msa0540870 | Msa1318240 | 0.812844 | 3.454707e-51 | -8.615850e-47 |
| Msa0540870 | Msa1320740 | 0.802923 | 4.455629e-49 | -8.615850e-47 |
| Msa0540870 | Msa1322860 | 0.833125 | 6.382242e-56 | -8.615850e-47 |
| Msa0540870 | Msa1327050 | 0.835308 | 1.809581e-56 | -8.615850e-47 |
| Msa0540870 | Msa1342430 | 0.805435 | 1.336695e-49 | -8.615850e-47 |
| Msa0540870 | Msa1363890 | 0.810582 | 1.072851e-50 | -8.615850e-47 |
| Msa0540870 | Msa1364470 | -0.812238 | 4.686917e-51 | -8.615850e-47 |
| Msa0540870 | Msa1367080 | 0.830153 | 3.447396e-55 | -8.615850e-47 |
| Msa0540870 | Msa1429360 | -0.817329 | 3.488556e-52 | -8.615850e-47 |
| Msa0540870 | Msa1431000 | 0.809588 | 1.757162e-50 | -8.615850e-47 |
| Msa0540870 | Msa1447090 | 0.802063 | 6.701500e-49 | -8.615850e-47 |
| Msa0540870 | Msa1464560 | 0.802605 | 5.183358e-49 | -8.615850e-47 |
| Msa0540870 | Msa1465900 | 0.828100 | 1.084448e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540870 | MtrunA17_Chr4g0018891 | 98.988 | 494 | 5 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| Msa0540870 | MtrunA17_Chr3g0079141 | 64.634 | 492 | 148 | 9 | 10 | 494 | 7 | 479 | 0.0 | 615 |
| Msa0540870 | MtrunA17_Chr2g0286991 | 31.948 | 385 | 235 | 17 | 82 | 447 | 11 | 387 | 1.81e-24 | 107 |
| Msa0540870 | MtrunA17_Chr2g0286991 | 27.239 | 268 | 153 | 11 | 189 | 447 | 256 | 490 | 9.95e-13 | 70.5 |
| Msa0540870 | MtrunA17_Chr4g0004901 | 27.953 | 254 | 170 | 7 | 216 | 464 | 371 | 616 | 1.86e-15 | 79.3 |
| Msa0540870 | MtrunA17_Chr4g0004901 | 22.936 | 436 | 262 | 10 | 82 | 486 | 64 | 456 | 6.68e-11 | 64.7 |
| Msa0540870 | MtrunA17_Chr1g0212071 | 27.202 | 386 | 239 | 18 | 82 | 445 | 20 | 385 | 3.79e-15 | 77.4 |
| Msa0540870 | MtrunA17_Chr1g0212071 | 30.918 | 207 | 113 | 8 | 261 | 464 | 91 | 270 | 2.83e-13 | 71.6 |
| Msa0540870 | MtrunA17_Chr1g0149351 | 25.538 | 325 | 179 | 12 | 189 | 451 | 202 | 525 | 4.34e-12 | 68.6 |
| Msa0540870 | MtrunA17_Chr7g0272131 | 22.727 | 484 | 240 | 15 | 82 | 452 | 49 | 511 | 5.50e-12 | 68.2 |
| Msa0540870 | MtrunA17_Chr1g0152951 | 24.331 | 411 | 235 | 15 | 82 | 430 | 64 | 460 | 4.10e-11 | 65.5 |
| Msa0540870 | MtrunA17_Chr4g0063841 | 24.620 | 329 | 211 | 12 | 189 | 482 | 219 | 545 | 9.23e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540870 | AT5G07670.1 | 59.118 | 499 | 176 | 8 | 1 | 494 | 1 | 476 | 0.0 | 555 |
| Msa0540870 | AT5G51380.1 | 56.341 | 481 | 203 | 3 | 14 | 493 | 4 | 478 | 0.0 | 520 |
| Msa0540870 | AT5G51370.2 | 59.506 | 405 | 163 | 1 | 90 | 494 | 40 | 443 | 3.82e-161 | 464 |
| Msa0540870 | AT5G51370.1 | 57.729 | 317 | 133 | 1 | 90 | 406 | 40 | 355 | 7.91e-117 | 348 |
| Msa0540870 | AT4G15475.1 | 27.919 | 394 | 245 | 12 | 82 | 450 | 11 | 390 | 2.46e-22 | 100 |
| Msa0540870 | AT4G15475.1 | 26.364 | 330 | 201 | 12 | 132 | 452 | 199 | 495 | 2.65e-16 | 82.0 |
| Msa0540870 | AT5G23340.1 | 25.248 | 404 | 239 | 16 | 82 | 453 | 10 | 382 | 5.90e-15 | 77.0 |
| Msa0540870 | AT2G25490.1 | 25.253 | 297 | 186 | 10 | 189 | 451 | 216 | 510 | 3.97e-13 | 72.4 |
| Msa0540870 | AT2G25490.1 | 23.929 | 280 | 182 | 11 | 189 | 450 | 348 | 614 | 2.52e-11 | 66.6 |
| Msa0540870 | AT5G25350.1 | 26.190 | 378 | 217 | 16 | 81 | 416 | 57 | 414 | 4.46e-11 | 65.9 |
Find 137 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTTCAATGGCGAATT+AGG | 0.133712 | 4_1:-23786378 | None:intergenic |
| TTGATCAATGATTGAGAAAT+TGG | 0.141986 | 4_1:-23786529 | None:intergenic |
| TCCGGGACTCGATGAGTATT+TGG | 0.154157 | 4_1:+23787349 | Msa0540870:CDS |
| GGATATTGGTTTGACGATTT+TGG | 0.163958 | 4_1:+23787118 | Msa0540870:CDS |
| TTGAATATGTATATTGATTC+TGG | 0.183844 | 4_1:+23786810 | Msa0540870:CDS |
| GGTTCGGTTGTTTCGGATAT+TGG | 0.212698 | 4_1:+23787104 | Msa0540870:CDS |
| TATCTGGTAGATTGATTTAT+AGG | 0.229578 | 4_1:+23786703 | Msa0540870:CDS |
| ACTTGAACCCTTCTCAAATT+AGG | 0.239059 | 4_1:-23786921 | None:intergenic |
| TGCTAGGGAGATTATTATTC+AGG | 0.242284 | 4_1:+23787463 | Msa0540870:CDS |
| CCTGTTGAGGTTATTGATAA+TGG | 0.245467 | 4_1:+23786873 | Msa0540870:CDS |
| GAACACGGTGGTCTGATTTA+TGG | 0.249895 | 4_1:+23786403 | Msa0540870:CDS |
| GTAAAATTGCTTTACTTAGA+AGG | 0.276039 | 4_1:+23788292 | Msa0540870:CDS |
| GCAACAACGATTTGGTTTAA+AGG | 0.278209 | 4_1:-23786447 | None:intergenic |
| CAGTTCACCATAGTGGAAAT+TGG | 0.281717 | 4_1:+23788937 | Msa0540870:three_prime_UTR |
| TTCACATTTCTCTGTGAATC+TGG | 0.289076 | 4_1:-23786600 | None:intergenic |
| TTCTTTGAGAGTAGTAAATA+AGG | 0.290782 | 4_1:-23788437 | None:intergenic |
| AATCATGTTGATTTGATTCA+TGG | 0.312777 | 4_1:+23786738 | Msa0540870:CDS |
| GGCGAATTAGGGTTAGGGTT+AGG | 0.312829 | 4_1:-23786366 | None:intergenic |
| AAGTCTTGTGGGGATTAGTA+TGG | 0.317529 | 4_1:+23788498 | Msa0540870:CDS |
| TGATCAATGATTGAGAAATT+GGG | 0.319273 | 4_1:-23786528 | None:intergenic |
| GCGAATTAGGGTTAGGGTTA+GGG | 0.322778 | 4_1:-23786365 | None:intergenic |
| CTGTTGAGGTTATTGATAAT+GGG | 0.336909 | 4_1:+23786874 | Msa0540870:CDS |
| AATCAACATGATTAAGATTA+GGG | 0.341888 | 4_1:-23786728 | None:intergenic |
| TCGGCTTTGCAACTGTTTGC+AGG | 0.351431 | 4_1:+23787513 | Msa0540870:CDS |
| GTGTTCTACATTGCAGGAAT+TGG | 0.354359 | 4_1:+23786986 | Msa0540870:CDS |
| GTTTCTTCAATGGCGAATTA+GGG | 0.356220 | 4_1:-23786377 | None:intergenic |
| TGAAATGGGTTTGTTAAGTT+TGG | 0.356585 | 4_1:+23786956 | Msa0540870:CDS |
| GGGTTAGTTGCTTTAGCTAA+TGG | 0.358130 | 4_1:+23786894 | Msa0540870:CDS |
| GGAAGAAGTGATTTCGTATC+TGG | 0.363751 | 4_1:-23788472 | None:intergenic |
| GATCGATTCGGATTCGTGAT+TGG | 0.364905 | 4_1:+23786670 | Msa0540870:CDS |
| ATTCTGGGTCGTCGCCGAAT+TGG | 0.370566 | 4_1:+23786826 | Msa0540870:CDS |
| TTGCAGCAGCAACAACGATT+TGG | 0.372725 | 4_1:-23786455 | None:intergenic |
| CAATTTCCACTATGGTGAAC+TGG | 0.373743 | 4_1:-23788936 | None:intergenic |
| AGATTATTATTCAGGATTGC+TGG | 0.374839 | 4_1:+23787471 | Msa0540870:CDS |
| CTACTCTCAAAGAATTGAAA+TGG | 0.378081 | 4_1:+23788446 | Msa0540870:CDS |
| AAATCAACATGATTAAGATT+AGG | 0.378177 | 4_1:-23786729 | None:intergenic |
| GATTGCTGGGGATTTGATAA+TGG | 0.380312 | 4_1:+23787485 | Msa0540870:CDS |
| TTGTGAAGCTTGAGCTTTGT+GGG | 0.380521 | 4_1:+23787159 | Msa0540870:CDS |
| TAAGAAGATTGATTTGAATC+CGG | 0.381569 | 4_1:+23787331 | Msa0540870:CDS |
| ACAGAGAAATGTGAATTCAT+TGG | 0.382696 | 4_1:+23786608 | Msa0540870:CDS |
| CCGGGACTCGATGAGTATTT+GGG | 0.383808 | 4_1:+23787350 | Msa0540870:CDS |
| TTCAATGGCGAATTAGGGTT+AGG | 0.387616 | 4_1:-23786372 | None:intergenic |
| CTAATCCCCACAAGACTTGA+TGG | 0.388509 | 4_1:-23788493 | None:intergenic |
| TTATATGATATAGCGTATTA+CGG | 0.389783 | 4_1:+23788634 | Msa0540870:three_prime_UTR |
| TTGAGAAGGGTTCAAGTGAT+TGG | 0.391585 | 4_1:+23786927 | Msa0540870:CDS |
| TTTCTGTTTGCAGGGTTGCT+AGG | 0.398905 | 4_1:+23787447 | Msa0540870:CDS |
| TGAAGAGTGTTCTACATTGC+AGG | 0.404045 | 4_1:+23786980 | Msa0540870:CDS |
| TTGGTTTAAAGGCTTTGATT+TGG | 0.408136 | 4_1:-23786436 | None:intergenic |
| TTTGCAAAAGTGTCAGTTGC+GGG | 0.408350 | 4_1:+23787400 | Msa0540870:CDS |
| ATTGCTAACAACAGAAGGTT+TGG | 0.408544 | 4_1:+23788321 | Msa0540870:CDS |
| TGAATATGTATATTGATTCT+GGG | 0.409312 | 4_1:+23786811 | Msa0540870:CDS |
| TTCTGTTTGCAGGGTTGCTA+GGG | 0.414617 | 4_1:+23787448 | Msa0540870:CDS |
| GGATTTGATAATGGCATGTT+CGG | 0.419974 | 4_1:+23787494 | Msa0540870:CDS |
| GTTGAATTTACAAGGTCGTT+TGG | 0.420107 | 4_1:+23786644 | Msa0540870:CDS |
| CTTGTGAAGCTTGAGCTTTG+TGG | 0.422001 | 4_1:+23787158 | Msa0540870:CDS |
| GTGTAGTGATAATGTGTTAA+GGG | 0.429057 | 4_1:+23787019 | Msa0540870:CDS |
| CTTCTTCCATCAAGTCTTGT+GGG | 0.431093 | 4_1:+23788487 | Msa0540870:CDS |
| CGTGTTCCTAGTTTCTTCAA+TGG | 0.432750 | 4_1:-23786387 | None:intergenic |
| TCCTCACAATTAAACCAATT+CGG | 0.434096 | 4_1:-23786840 | None:intergenic |
| GAATTTCATCAGATAACAAA+AGG | 0.435440 | 4_1:-23786554 | None:intergenic |
| AGTGATTGGTGCTAGTGAAA+TGG | 0.438381 | 4_1:+23786941 | Msa0540870:CDS |
| GTCGTTTGGTTCGATCGATT+CGG | 0.438610 | 4_1:+23786658 | Msa0540870:CDS |
| CCATTATCAATAACCTCAAC+AGG | 0.455104 | 4_1:-23786873 | None:intergenic |
| AAGAAGATTGATTTGAATCC+GGG | 0.456191 | 4_1:+23787332 | Msa0540870:CDS |
| AGGGGACCCAATTTCCACTA+TGG | 0.462887 | 4_1:-23788944 | None:intergenic |
| GTATGGCTCATGCTATTAAC+CGG | 0.463218 | 4_1:+23789079 | Msa0540870:three_prime_UTR |
| GATCAATGATTGAGAAATTG+GGG | 0.464246 | 4_1:-23786527 | None:intergenic |
| GATTATTATTCAGGATTGCT+GGG | 0.464395 | 4_1:+23787472 | Msa0540870:CDS |
| TTGTGTTGTTGTTGCGGCGG+TGG | 0.464801 | 4_1:-23786290 | None:intergenic |
| AGTTCACCATAGTGGAAATT+GGG | 0.467391 | 4_1:+23788938 | Msa0540870:three_prime_UTR |
| GCGGGATAAGAAGAGCGTTT+CGG | 0.467821 | 4_1:+23787418 | Msa0540870:CDS |
| ACCTTTAGCTTAGATGTTGG+CGG | 0.468048 | 4_1:+23788831 | Msa0540870:three_prime_UTR |
| GTAAATAAGGTTGCAAGTGA+AGG | 0.475213 | 4_1:-23788424 | None:intergenic |
| TTGATGGGATTAAGGCGATT+GGG | 0.480218 | 4_1:+23787195 | Msa0540870:CDS |
| GTGATTGGTGCTAGTGAAAT+GGG | 0.480614 | 4_1:+23786942 | Msa0540870:CDS |
| TTTGATGGGATTAAGGCGAT+TGG | 0.483087 | 4_1:+23787194 | Msa0540870:CDS |
| GCTTACATGAGACTACTCTA+AGG | 0.483154 | 4_1:-23788378 | None:intergenic |
| AGTGTAGTGATAATGTGTTA+AGG | 0.483866 | 4_1:+23787018 | Msa0540870:CDS |
| TTCCTTATTAGTCTGACAAA+AGG | 0.488534 | 4_1:-23788879 | None:intergenic |
| CCCAAATACTCATCGAGTCC+CGG | 0.489216 | 4_1:-23787350 | None:intergenic |
| ATCATGTTGATTTGATTCAT+GGG | 0.489312 | 4_1:+23786739 | Msa0540870:CDS |
| TCAATGGCGAATTAGGGTTA+GGG | 0.492554 | 4_1:-23786371 | None:intergenic |
| AACCATGTTACCGTTGTCTG+TGG | 0.492851 | 4_1:+23789010 | Msa0540870:three_prime_UTR |
| ATTCATTGGTTTGTAAAAGA+TGG | 0.495844 | 4_1:+23786622 | Msa0540870:CDS |
| AGTTGACATTGTGTGATCAT+AGG | 0.504164 | 4_1:+23787240 | Msa0540870:CDS |
| AAAAGATGGTTGAATTTACA+AGG | 0.506141 | 4_1:+23786636 | Msa0540870:CDS |
| GGAGAATATGCTTCCTGTTG+AGG | 0.516115 | 4_1:+23786860 | Msa0540870:CDS |
| TTCTTCCATCAAGTCTTGTG+GGG | 0.518577 | 4_1:+23788488 | Msa0540870:CDS |
| AAATTGGTTGGGAATGTTGA+GGG | 0.518791 | 4_1:+23787074 | Msa0540870:CDS |
| GCCGAATTGGTTTAATTGTG+AGG | 0.522553 | 4_1:+23786839 | Msa0540870:CDS |
| TTTACCTTTAGCTTAGATGT+TGG | 0.523268 | 4_1:+23788828 | Msa0540870:three_prime_UTR |
| ACTTCTTCCATCAAGTCTTG+TGG | 0.526263 | 4_1:+23788486 | Msa0540870:CDS |
| TGTTGTTGTTGCGGCGGTGG+TGG | 0.529092 | 4_1:-23786287 | None:intergenic |
| ACCGCCAACATCTAAGCTAA+AGG | 0.529111 | 4_1:-23788832 | None:intergenic |
| CTTGAGCTTTGTGGGTGTGA+AGG | 0.531367 | 4_1:+23787167 | Msa0540870:CDS |
| ATGGTTGTCCTAATTTGAGA+AGG | 0.537606 | 4_1:+23786913 | Msa0540870:CDS |
| ATCATAGGATGGATGATGGA+TGG | 0.540837 | 4_1:+23787255 | Msa0540870:CDS |
| TGGGAAGTGTTGTCAGATGT+TGG | 0.542314 | 4_1:+23787214 | Msa0540870:CDS |
| TAGTCTAATAGCAATTATAG+TGG | 0.546807 | 4_1:-23788704 | None:intergenic |
| TTGAGCTTTGTGGGTGTGAA+GGG | 0.551393 | 4_1:+23787168 | Msa0540870:CDS |
| TGCTCATTGCTAACAACAGA+AGG | 0.553995 | 4_1:+23788316 | Msa0540870:CDS |
| AAATGCAGCCTCTCAAGTGC+AGG | 0.555404 | 4_1:-23787380 | None:intergenic |
| GTTCTTGTCCTGCACTTGAG+AGG | 0.559400 | 4_1:+23787372 | Msa0540870:CDS |
| AGTCTTGTGGGGATTAGTAT+GGG | 0.562954 | 4_1:+23788499 | Msa0540870:CDS |
| GGGATTAGTATGGGAAAGAA+AGG | 0.563280 | 4_1:+23788508 | Msa0540870:CDS |
| TTACGCCCAGTTCACCATAG+TGG | 0.569574 | 4_1:+23788930 | Msa0540870:three_prime_UTR |
| TGGTTGTCCTAATTTGAGAA+GGG | 0.574459 | 4_1:+23786914 | Msa0540870:CDS |
| TGTGATCATAGGATGGATGA+TGG | 0.581367 | 4_1:+23787251 | Msa0540870:CDS |
| TGGAGTCTGTAATACATTCG+TGG | 0.584695 | 4_1:+23788341 | Msa0540870:CDS |
| AATTCGCCATTGAAGAAACT+AGG | 0.585056 | 4_1:+23786381 | Msa0540870:CDS |
| ACCATGTTACCGTTGTCTGT+GGG | 0.585946 | 4_1:+23789011 | Msa0540870:three_prime_UTR |
| AATTTCATCAGATAACAAAA+GGG | 0.589426 | 4_1:-23786553 | None:intergenic |
| TAAGGGGAATTGCGGCGTGT+GGG | 0.590970 | 4_1:+23787036 | Msa0540870:CDS |
| GTCTGTAATACATTCGTGGA+AGG | 0.594822 | 4_1:+23788345 | Msa0540870:CDS |
| GCCCACAGACAACGGTAACA+TGG | 0.594899 | 4_1:-23789012 | None:intergenic |
| TTAAGGGGAATTGCGGCGTG+TGG | 0.599283 | 4_1:+23787035 | Msa0540870:CDS |
| GGATGATGGATGGATGGCTG+CGG | 0.600102 | 4_1:+23787265 | Msa0540870:CDS |
| TGTAGTGATAATGTGTTAAG+GGG | 0.600472 | 4_1:+23787020 | Msa0540870:CDS |
| GAAATTGGTTGGGAATGTTG+AGG | 0.606598 | 4_1:+23787073 | Msa0540870:CDS |
| AATTTCCACTATGGTGAACT+GGG | 0.607607 | 4_1:-23788935 | None:intergenic |
| AGCTACAAGCCCACAGACAA+CGG | 0.611946 | 4_1:-23789020 | None:intergenic |
| CTCTCAAAGAATTGAAATGG+AGG | 0.618145 | 4_1:+23788449 | Msa0540870:CDS |
| TAGGATGGATGATGGATGGA+TGG | 0.622771 | 4_1:+23787259 | Msa0540870:CDS |
| ATTTGCAAAAGTGTCAGTTG+CGG | 0.627786 | 4_1:+23787399 | Msa0540870:CDS |
| TATAAAGAAAATGCAACAAG+GGG | 0.630964 | 4_1:-23788962 | None:intergenic |
| GTATAAAGAAAATGCAACAA+GGG | 0.634900 | 4_1:-23788963 | None:intergenic |
| TGTATAAAGAAAATGCAACA+AGG | 0.637047 | 4_1:-23788964 | None:intergenic |
| TAATGTGTTAAGGGGAATTG+CGG | 0.643313 | 4_1:+23787028 | Msa0540870:CDS |
| GACATTGTGTGATCATAGGA+TGG | 0.643629 | 4_1:+23787244 | Msa0540870:CDS |
| ATTATTATTCAGGATTGCTG+GGG | 0.650156 | 4_1:+23787473 | Msa0540870:CDS |
| CATTGAAGAAACTAGGAACA+CGG | 0.661833 | 4_1:+23786388 | Msa0540870:CDS |
| ATTAGTATGGGAAAGAAAGG+CGG | 0.671112 | 4_1:+23788511 | Msa0540870:CDS |
| GAAGTGTTGTCAGATGTTGG+AGG | 0.680445 | 4_1:+23787217 | Msa0540870:CDS |
| TATAGCGTATTACGGAACAA+TGG | 0.707873 | 4_1:+23788642 | Msa0540870:three_prime_UTR |
| TAATTGCTATTAGACTACAA+TGG | 0.735140 | 4_1:+23788710 | Msa0540870:three_prime_UTR |
| ACTATAACGCTATATCATAG+CGG | 0.739086 | 4_1:-23788680 | None:intergenic |
| TGAAGAAACTAGGAACACGG+TGG | 0.807458 | 4_1:+23786391 | Msa0540870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTACACAATATAATTTTT+CGG | - | chr4_1:23787839-23787858 | None:intergenic | 10.0% |
| !! | GAAAAATTATATTGTGTAAT+TGG | + | chr4_1:23787838-23787857 | Msa0540870:intron | 15.0% |
| !! | CTTTAATCATATATGTATAT+TGG | + | chr4_1:23787876-23787895 | Msa0540870:intron | 15.0% |
| !!! | TTCAATTTCTATATGTTTTT+TGG | + | chr4_1:23788155-23788174 | Msa0540870:intron | 15.0% |
| !!! | TCAATTTCTATATGTTTTTT+GGG | + | chr4_1:23788156-23788175 | Msa0540870:intron | 15.0% |
| !! | TAAAAAAGTGATTATTACAT+TGG | - | chr4_1:23788812-23788831 | None:intergenic | 15.0% |
| !!! | ATACTTTTGTATAAAATGTA+TGG | + | chr4_1:23789062-23789081 | Msa0540870:three_prime_UTR | 15.0% |
| !! | AATTTCATCAGATAACAAAA+GGG | - | chr4_1:23786556-23786575 | None:intergenic | 20.0% |
| !! | AATCAACATGATTAAGATTA+GGG | - | chr4_1:23786731-23786750 | None:intergenic | 20.0% |
| !! | AAATCAACATGATTAAGATT+AGG | - | chr4_1:23786732-23786751 | None:intergenic | 20.0% |
| !!! | TTGAATATGTATATTGATTC+TGG | + | chr4_1:23786810-23786829 | Msa0540870:CDS | 20.0% |
| !!! | TGAATATGTATATTGATTCT+GGG | + | chr4_1:23786811-23786830 | Msa0540870:CDS | 20.0% |
| !!! | TCATATTTTAACTTAACTCT+CGG | + | chr4_1:23787759-23787778 | Msa0540870:intron | 20.0% |
| !! | ATATATGTATATTGGCAATA+TGG | + | chr4_1:23787884-23787903 | Msa0540870:intron | 20.0% |
| !!! | AGTAATTTTTTCTTTCAGTA+TGG | + | chr4_1:23787929-23787948 | Msa0540870:intron | 20.0% |
| !!! | AGTAATTTTTTCTTTCAGTA+TGG | + | chr4_1:23787929-23787948 | Msa0540870:intron | 20.0% |
| !! | TTATATGATATAGCGTATTA+CGG | + | chr4_1:23788634-23788653 | Msa0540870:three_prime_UTR | 20.0% |
| !!! | TTTTACATAATTACATTGCT+AGG | - | chr4_1:23788909-23788928 | None:intergenic | 20.0% |
| !!! | AAATTAGTGTTTGATTTTCG+AGG | - | chr4_1:23786507-23786526 | None:intergenic | 25.0% |
| ! | TGATCAATGATTGAGAAATT+GGG | - | chr4_1:23786531-23786550 | None:intergenic | 25.0% |
| ! | TTGATCAATGATTGAGAAAT+TGG | - | chr4_1:23786532-23786551 | None:intergenic | 25.0% |
| ! | GAATTTCATCAGATAACAAA+AGG | - | chr4_1:23786557-23786576 | None:intergenic | 25.0% |
| !!! | ATTCATTGGTTTGTAAAAGA+TGG | + | chr4_1:23786622-23786641 | Msa0540870:CDS | 25.0% |
| ! | AAAAGATGGTTGAATTTACA+AGG | + | chr4_1:23786636-23786655 | Msa0540870:CDS | 25.0% |
| !! | TATCTGGTAGATTGATTTAT+AGG | + | chr4_1:23786703-23786722 | Msa0540870:CDS | 25.0% |
| !!! | AATCATGTTGATTTGATTCA+TGG | + | chr4_1:23786738-23786757 | Msa0540870:CDS | 25.0% |
| !!! | ATCATGTTGATTTGATTCAT+GGG | + | chr4_1:23786739-23786758 | Msa0540870:CDS | 25.0% |
| !!! | GAATTTGCAGATTTTGAAAT+TGG | + | chr4_1:23787058-23787077 | Msa0540870:CDS | 25.0% |
| !!! | TAAGAAGATTGATTTGAATC+CGG | + | chr4_1:23787331-23787350 | Msa0540870:CDS | 25.0% |
| ! | TACATTGGAAGTGATAAATT+TGG | + | chr4_1:23787694-23787713 | Msa0540870:intron | 25.0% |
| !! | GCATAACACAAATTAGTTTA+CGG | + | chr4_1:23787781-23787800 | Msa0540870:intron | 25.0% |
| !! | CATAACACAAATTAGTTTAC+GGG | + | chr4_1:23787782-23787801 | Msa0540870:intron | 25.0% |
| ! | GATTAAAGACATTTCAACAT+TGG | - | chr4_1:23787864-23787883 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTTTCAGTATGGT+TGG | + | chr4_1:23787933-23787952 | Msa0540870:intron | 25.0% |
| !!! | ATTTTTTCTTTCAGTATGGT+TGG | + | chr4_1:23787933-23787952 | Msa0540870:intron | 25.0% |
| ! | GTAAAATTGCTTTACTTAGA+AGG | + | chr4_1:23788292-23788311 | Msa0540870:CDS | 25.0% |
| !! | TTCTTTGAGAGTAGTAAATA+AGG | - | chr4_1:23788440-23788459 | None:intergenic | 25.0% |
| ! | ATAGTTGATCACAAAAATAG+TGG | + | chr4_1:23788580-23788599 | Msa0540870:three_prime_UTR | 25.0% |
| ! | TAGTCTAATAGCAATTATAG+TGG | - | chr4_1:23788707-23788726 | None:intergenic | 25.0% |
| !! | TAATTGCTATTAGACTACAA+TGG | + | chr4_1:23788710-23788729 | Msa0540870:three_prime_UTR | 25.0% |
| !! | AGTAGTTTTCTAATAAACAC+AGG | + | chr4_1:23788734-23788753 | Msa0540870:three_prime_UTR | 25.0% |
| ! | TATAAAGAAAATGCAACAAG+GGG | - | chr4_1:23788965-23788984 | None:intergenic | 25.0% |
| ! | GTATAAAGAAAATGCAACAA+GGG | - | chr4_1:23788966-23788985 | None:intergenic | 25.0% |
| ! | TGTATAAAGAAAATGCAACA+AGG | - | chr4_1:23788967-23788986 | None:intergenic | 25.0% |
| !!! | AAAAACGATGTCGTTTTCAA+CGG | + | chr4_1:23786311-23786330 | Msa0540870:exon | 30.0% |
| ! | TTGGTTTAAAGGCTTTGATT+TGG | - | chr4_1:23786439-23786458 | None:intergenic | 30.0% |
| GATCAATGATTGAGAAATTG+GGG | - | chr4_1:23786530-23786549 | None:intergenic | 30.0% | |
| ACAGAGAAATGTGAATTCAT+TGG | + | chr4_1:23786608-23786627 | Msa0540870:CDS | 30.0% | |
| !!! | GATTGGAACTTTGTTTTATC+TGG | + | chr4_1:23786687-23786706 | Msa0540870:CDS | 30.0% |
| TCCTCACAATTAAACCAATT+CGG | - | chr4_1:23786843-23786862 | None:intergenic | 30.0% | |
| ! | CTGTTGAGGTTATTGATAAT+GGG | + | chr4_1:23786874-23786893 | Msa0540870:CDS | 30.0% |
| !! | TGAAATGGGTTTGTTAAGTT+TGG | + | chr4_1:23786956-23786975 | Msa0540870:CDS | 30.0% |
| ! | AGTGTAGTGATAATGTGTTA+AGG | + | chr4_1:23787018-23787037 | Msa0540870:CDS | 30.0% |
| ! | GTGTAGTGATAATGTGTTAA+GGG | + | chr4_1:23787019-23787038 | Msa0540870:CDS | 30.0% |
| ! | TGTAGTGATAATGTGTTAAG+GGG | + | chr4_1:23787020-23787039 | Msa0540870:CDS | 30.0% |
| !!! | TTGCAGATTTTGAAATTGGT+TGG | + | chr4_1:23787062-23787081 | Msa0540870:CDS | 30.0% |
| !!! | TGCAGATTTTGAAATTGGTT+GGG | + | chr4_1:23787063-23787082 | Msa0540870:CDS | 30.0% |
| !!! | ATTTTATGGTTCGGTTGTTT+CGG | + | chr4_1:23787097-23787116 | Msa0540870:CDS | 30.0% |
| !! | AAGAAGATTGATTTGAATCC+GGG | + | chr4_1:23787332-23787351 | Msa0540870:CDS | 30.0% |
| AGATTATTATTCAGGATTGC+TGG | + | chr4_1:23787471-23787490 | Msa0540870:CDS | 30.0% | |
| GATTATTATTCAGGATTGCT+GGG | + | chr4_1:23787472-23787491 | Msa0540870:CDS | 30.0% | |
| ATTATTATTCAGGATTGCTG+GGG | + | chr4_1:23787473-23787492 | Msa0540870:CDS | 30.0% | |
| TTGGAAGTGATAAATTTGGT+TGG | + | chr4_1:23787698-23787717 | Msa0540870:intron | 30.0% | |
| ATGTATATTGGCAATATGGT+TGG | + | chr4_1:23787888-23787907 | Msa0540870:intron | 30.0% | |
| TGTATATTGGCAATATGGTT+GGG | + | chr4_1:23787889-23787908 | Msa0540870:intron | 30.0% | |
| AACCTTAAGTCTTAAGTTAG+AGG | - | chr4_1:23788044-23788063 | None:intergenic | 30.0% | |
| GCAATATTGGAATAAGGAAA+AGG | - | chr4_1:23788089-23788108 | None:intergenic | 30.0% | |
| CTTGTTGCAATATTGGAATA+AGG | - | chr4_1:23788095-23788114 | None:intergenic | 30.0% | |
| !! | GTATCAACTTGTTGCAATAT+TGG | - | chr4_1:23788102-23788121 | None:intergenic | 30.0% |
| !! | ATTGATTGCTGTTCTTTTTC+AGG | + | chr4_1:23788266-23788285 | Msa0540870:intron | 30.0% |
| CTACTCTCAAAGAATTGAAA+TGG | + | chr4_1:23788446-23788465 | Msa0540870:CDS | 30.0% | |
| !!! | AAGGCGGCAAATTTTTTAAA+AGG | + | chr4_1:23788527-23788546 | Msa0540870:CDS | 30.0% |
| ACTATAACGCTATATCATAG+CGG | - | chr4_1:23788683-23788702 | None:intergenic | 30.0% | |
| ! | ACAGATTATTTTCACTGACA+TGG | + | chr4_1:23788770-23788789 | Msa0540870:three_prime_UTR | 30.0% |
| ! | TTTACCTTTAGCTTAGATGT+TGG | + | chr4_1:23788828-23788847 | Msa0540870:three_prime_UTR | 30.0% |
| ! | TTCCTTTTGTCAGACTAATA+AGG | + | chr4_1:23788877-23788896 | Msa0540870:three_prime_UTR | 30.0% |
| ! | TTCCTTATTAGTCTGACAAA+AGG | - | chr4_1:23788882-23788901 | None:intergenic | 30.0% |
| !! | TCGTTTTTGTGTTGTTGTTG+CGG | - | chr4_1:23786299-23786318 | None:intergenic | 35.0% |
| GTTTCTTCAATGGCGAATTA+GGG | - | chr4_1:23786380-23786399 | None:intergenic | 35.0% | |
| AGTTTCTTCAATGGCGAATT+AGG | - | chr4_1:23786381-23786400 | None:intergenic | 35.0% | |
| AATTCGCCATTGAAGAAACT+AGG | + | chr4_1:23786381-23786400 | Msa0540870:CDS | 35.0% | |
| CATTGAAGAAACTAGGAACA+CGG | + | chr4_1:23786388-23786407 | Msa0540870:CDS | 35.0% | |
| !! | GCAACAACGATTTGGTTTAA+AGG | - | chr4_1:23786450-23786469 | None:intergenic | 35.0% |
| TTCACATTTCTCTGTGAATC+TGG | - | chr4_1:23786603-23786622 | None:intergenic | 35.0% | |
| GTTGAATTTACAAGGTCGTT+TGG | + | chr4_1:23786644-23786663 | Msa0540870:CDS | 35.0% | |
| CCATTATCAATAACCTCAAC+AGG | - | chr4_1:23786876-23786895 | None:intergenic | 35.0% | |
| CCTGTTGAGGTTATTGATAA+TGG | + | chr4_1:23786873-23786892 | Msa0540870:CDS | 35.0% | |
| ATGGTTGTCCTAATTTGAGA+AGG | + | chr4_1:23786913-23786932 | Msa0540870:CDS | 35.0% | |
| TGGTTGTCCTAATTTGAGAA+GGG | + | chr4_1:23786914-23786933 | Msa0540870:CDS | 35.0% | |
| ACTTGAACCCTTCTCAAATT+AGG | - | chr4_1:23786924-23786943 | None:intergenic | 35.0% | |
| TAATGTGTTAAGGGGAATTG+CGG | + | chr4_1:23787028-23787047 | Msa0540870:CDS | 35.0% | |
| AAATTGGTTGGGAATGTTGA+GGG | + | chr4_1:23787074-23787093 | Msa0540870:CDS | 35.0% | |
| ! | TGTTGAGGGATTTTATGGTT+CGG | + | chr4_1:23787088-23787107 | Msa0540870:CDS | 35.0% |
| !!! | GGATATTGGTTTGACGATTT+TGG | + | chr4_1:23787118-23787137 | Msa0540870:CDS | 35.0% |
| AGTTGACATTGTGTGATCAT+AGG | + | chr4_1:23787240-23787259 | Msa0540870:CDS | 35.0% | |
| !! | ATTTGCAAAAGTGTCAGTTG+CGG | + | chr4_1:23787399-23787418 | Msa0540870:CDS | 35.0% |
| TGCTAGGGAGATTATTATTC+AGG | + | chr4_1:23787463-23787482 | Msa0540870:CDS | 35.0% | |
| !! | GGATTTGATAATGGCATGTT+CGG | + | chr4_1:23787494-23787513 | Msa0540870:CDS | 35.0% |
| ! | ACTATACTGTCTAGAACTTG+TGG | + | chr4_1:23787578-23787597 | Msa0540870:intron | 35.0% |
| GTATATTGGCAATATGGTTG+GGG | + | chr4_1:23787890-23787909 | Msa0540870:intron | 35.0% | |
| TATATTGGCAATATGGTTGG+GGG | + | chr4_1:23787891-23787910 | Msa0540870:intron | 35.0% | |
| TTCTTTCAGTATGGTTGGAA+TGG | + | chr4_1:23787979-23787998 | Msa0540870:intron | 35.0% | |
| CACCTCTAACTTAAGACTTA+AGG | + | chr4_1:23788039-23788058 | Msa0540870:intron | 35.0% | |
| TAAGGTTGTAGACTAGAACA+AGG | + | chr4_1:23788057-23788076 | Msa0540870:intron | 35.0% | |
| !!! | TTTTGGGTCTTGTTTGAAGT+TGG | + | chr4_1:23788172-23788191 | Msa0540870:intron | 35.0% |
| GATTACAGTCACTTCTATGT+GGG | - | chr4_1:23788221-23788240 | None:intergenic | 35.0% | |
| TGATTACAGTCACTTCTATG+TGG | - | chr4_1:23788222-23788241 | None:intergenic | 35.0% | |
| ATTGCTAACAACAGAAGGTT+TGG | + | chr4_1:23788321-23788340 | Msa0540870:CDS | 35.0% | |
| GTAAATAAGGTTGCAAGTGA+AGG | - | chr4_1:23788427-23788446 | None:intergenic | 35.0% | |
| CTCTCAAAGAATTGAAATGG+AGG | + | chr4_1:23788449-23788468 | Msa0540870:CDS | 35.0% | |
| ATTAGTATGGGAAAGAAAGG+CGG | + | chr4_1:23788511-23788530 | Msa0540870:CDS | 35.0% | |
| TATAGCGTATTACGGAACAA+TGG | + | chr4_1:23788642-23788661 | Msa0540870:three_prime_UTR | 35.0% | |
| AATTTCCACTATGGTGAACT+GGG | - | chr4_1:23788938-23788957 | None:intergenic | 35.0% | |
| ! | AGTTCACCATAGTGGAAATT+GGG | + | chr4_1:23788938-23788957 | Msa0540870:three_prime_UTR | 35.0% |
| !! | TTTTTGTGTTGTTGTTGCGG+CGG | - | chr4_1:23786296-23786315 | None:intergenic | 40.0% |
| TCAATGGCGAATTAGGGTTA+GGG | - | chr4_1:23786374-23786393 | None:intergenic | 40.0% | |
| TTCAATGGCGAATTAGGGTT+AGG | - | chr4_1:23786375-23786394 | None:intergenic | 40.0% | |
| CGTGTTCCTAGTTTCTTCAA+TGG | - | chr4_1:23786390-23786409 | None:intergenic | 40.0% | |
| ! | GCCGAATTGGTTTAATTGTG+AGG | + | chr4_1:23786839-23786858 | Msa0540870:CDS | 40.0% |
| !! | GGGTTAGTTGCTTTAGCTAA+TGG | + | chr4_1:23786894-23786913 | Msa0540870:CDS | 40.0% |
| TTGAGAAGGGTTCAAGTGAT+TGG | + | chr4_1:23786927-23786946 | Msa0540870:CDS | 40.0% | |
| !! | AGTGATTGGTGCTAGTGAAA+TGG | + | chr4_1:23786941-23786960 | Msa0540870:CDS | 40.0% |
| !! | GTGATTGGTGCTAGTGAAAT+GGG | + | chr4_1:23786942-23786961 | Msa0540870:CDS | 40.0% |
| !! | TGAAGAGTGTTCTACATTGC+AGG | + | chr4_1:23786980-23786999 | Msa0540870:CDS | 40.0% |
| GTGTTCTACATTGCAGGAAT+TGG | + | chr4_1:23786986-23787005 | Msa0540870:CDS | 40.0% | |
| GAAATTGGTTGGGAATGTTG+AGG | + | chr4_1:23787073-23787092 | Msa0540870:CDS | 40.0% | |
| ! | GGGAATGTTGAGGGATTTTA+TGG | + | chr4_1:23787083-23787102 | Msa0540870:CDS | 40.0% |
| !!! | TTTTGGCTCAAGGTTGTAAG+AGG | + | chr4_1:23787135-23787154 | Msa0540870:CDS | 40.0% |
| ! | TTGTGAAGCTTGAGCTTTGT+GGG | + | chr4_1:23787159-23787178 | Msa0540870:CDS | 40.0% |
| !! | AGGGAGTTTTGATGGGATTA+AGG | + | chr4_1:23787187-23787206 | Msa0540870:CDS | 40.0% |
| TTTGATGGGATTAAGGCGAT+TGG | + | chr4_1:23787194-23787213 | Msa0540870:CDS | 40.0% | |
| TTGATGGGATTAAGGCGATT+GGG | + | chr4_1:23787195-23787214 | Msa0540870:CDS | 40.0% | |
| GACATTGTGTGATCATAGGA+TGG | + | chr4_1:23787244-23787263 | Msa0540870:CDS | 40.0% | |
| TGTGATCATAGGATGGATGA+TGG | + | chr4_1:23787251-23787270 | Msa0540870:CDS | 40.0% | |
| !! | ATCATAGGATGGATGATGGA+TGG | + | chr4_1:23787255-23787274 | Msa0540870:CDS | 40.0% |
| !! | TTTGCAAAAGTGTCAGTTGC+GGG | + | chr4_1:23787400-23787419 | Msa0540870:CDS | 40.0% |
| !!! | GGCTTTGTTTTCTGTTTGCA+GGG | + | chr4_1:23787439-23787458 | Msa0540870:CDS | 40.0% |
| GATTGCTGGGGATTTGATAA+TGG | + | chr4_1:23787485-23787504 | Msa0540870:CDS | 40.0% | |
| TTGCAACTGTTTGCAGGTAA+TGG | + | chr4_1:23787519-23787538 | Msa0540870:intron | 40.0% | |
| CTTGCAATCGTCAATCAAAC+AGG | - | chr4_1:23787613-23787632 | None:intergenic | 40.0% | |
| AACTAACGCTCAACACATCA+TGG | - | chr4_1:23787664-23787683 | None:intergenic | 40.0% | |
| TAGTTGTCAATGCGCTACAT+TGG | + | chr4_1:23787679-23787698 | Msa0540870:intron | 40.0% | |
| CACAAATTAGTCCATCACCA+GGG | - | chr4_1:23787738-23787757 | None:intergenic | 40.0% | |
| ATTCAACACACAGTATCCCA+GGG | - | chr4_1:23787815-23787834 | None:intergenic | 40.0% | |
| AATTCAACACACAGTATCCC+AGG | - | chr4_1:23787816-23787835 | None:intergenic | 40.0% | |
| ATATTGGCAATATGGTTGGG+GGG | + | chr4_1:23787892-23787911 | Msa0540870:intron | 40.0% | |
| !! | GTGGGTTAGACGACTAAAAT+TGG | - | chr4_1:23788203-23788222 | None:intergenic | 40.0% |
| TGCTCATTGCTAACAACAGA+AGG | + | chr4_1:23788316-23788335 | Msa0540870:CDS | 40.0% | |
| TGGAGTCTGTAATACATTCG+TGG | + | chr4_1:23788341-23788360 | Msa0540870:CDS | 40.0% | |
| GTCTGTAATACATTCGTGGA+AGG | + | chr4_1:23788345-23788364 | Msa0540870:CDS | 40.0% | |
| GCTTACATGAGACTACTCTA+AGG | - | chr4_1:23788381-23788400 | None:intergenic | 40.0% | |
| GGAAGAAGTGATTTCGTATC+TGG | - | chr4_1:23788475-23788494 | None:intergenic | 40.0% | |
| ACTTCTTCCATCAAGTCTTG+TGG | + | chr4_1:23788486-23788505 | Msa0540870:CDS | 40.0% | |
| ! | CTTCTTCCATCAAGTCTTGT+GGG | + | chr4_1:23788487-23788506 | Msa0540870:CDS | 40.0% |
| ! | TTCTTCCATCAAGTCTTGTG+GGG | + | chr4_1:23788488-23788507 | Msa0540870:CDS | 40.0% |
| ! | AAGTCTTGTGGGGATTAGTA+TGG | + | chr4_1:23788498-23788517 | Msa0540870:CDS | 40.0% |
| ! | AGTCTTGTGGGGATTAGTAT+GGG | + | chr4_1:23788499-23788518 | Msa0540870:CDS | 40.0% |
| ! | GGGATTAGTATGGGAAAGAA+AGG | + | chr4_1:23788508-23788527 | Msa0540870:CDS | 40.0% |
| ! | ACCTTTAGCTTAGATGTTGG+CGG | + | chr4_1:23788831-23788850 | Msa0540870:three_prime_UTR | 40.0% |
| CAATTTCCACTATGGTGAAC+TGG | - | chr4_1:23788939-23788958 | None:intergenic | 40.0% | |
| ! | CAGTTCACCATAGTGGAAAT+TGG | + | chr4_1:23788937-23788956 | Msa0540870:three_prime_UTR | 40.0% |
| GCGAATTAGGGTTAGGGTTA+GGG | - | chr4_1:23786368-23786387 | None:intergenic | 45.0% | |
| TGAAGAAACTAGGAACACGG+TGG | + | chr4_1:23786391-23786410 | Msa0540870:CDS | 45.0% | |
| GAACACGGTGGTCTGATTTA+TGG | + | chr4_1:23786403-23786422 | Msa0540870:CDS | 45.0% | |
| TTGCAGCAGCAACAACGATT+TGG | - | chr4_1:23786458-23786477 | None:intergenic | 45.0% | |
| ! | GTCGTTTGGTTCGATCGATT+CGG | + | chr4_1:23786658-23786677 | Msa0540870:CDS | 45.0% |
| !! | GATCGATTCGGATTCGTGAT+TGG | + | chr4_1:23786670-23786689 | Msa0540870:CDS | 45.0% |
| GGAGAATATGCTTCCTGTTG+AGG | + | chr4_1:23786860-23786879 | Msa0540870:CDS | 45.0% | |
| ! | GGTTCGGTTGTTTCGGATAT+TGG | + | chr4_1:23787104-23787123 | Msa0540870:CDS | 45.0% |
| !!! | GGTTTGACGATTTTGGCTCA+AGG | + | chr4_1:23787125-23787144 | Msa0540870:CDS | 45.0% |
| CTTGTGAAGCTTGAGCTTTG+TGG | + | chr4_1:23787158-23787177 | Msa0540870:CDS | 45.0% | |
| ! | TTGAGCTTTGTGGGTGTGAA+GGG | + | chr4_1:23787168-23787187 | Msa0540870:CDS | 45.0% |
| !! | GGTGTGAAGGGAGTTTTGAT+GGG | + | chr4_1:23787180-23787199 | Msa0540870:CDS | 45.0% |
| !! | TGGGAAGTGTTGTCAGATGT+TGG | + | chr4_1:23787214-23787233 | Msa0540870:CDS | 45.0% |
| !! | GAAGTGTTGTCAGATGTTGG+AGG | + | chr4_1:23787217-23787236 | Msa0540870:CDS | 45.0% |
| !! | TAGGATGGATGATGGATGGA+TGG | + | chr4_1:23787259-23787278 | Msa0540870:CDS | 45.0% |
| !!! | CGGCTTTGTTTTCTGTTTGC+AGG | + | chr4_1:23787438-23787457 | Msa0540870:CDS | 45.0% |
| TTTCTGTTTGCAGGGTTGCT+AGG | + | chr4_1:23787447-23787466 | Msa0540870:CDS | 45.0% | |
| TTCTGTTTGCAGGGTTGCTA+GGG | + | chr4_1:23787448-23787467 | Msa0540870:CDS | 45.0% | |
| CCACAAATTAGTCCATCACC+AGG | - | chr4_1:23787739-23787758 | None:intergenic | 45.0% | |
| !! | CCTGGTGATGGACTAATTTG+TGG | + | chr4_1:23787736-23787755 | Msa0540870:intron | 45.0% |
| CTAATCCCCACAAGACTTGA+TGG | - | chr4_1:23788496-23788515 | None:intergenic | 45.0% | |
| ACCGCCAACATCTAAGCTAA+AGG | - | chr4_1:23788835-23788854 | None:intergenic | 45.0% | |
| AACCATGTTACCGTTGTCTG+TGG | + | chr4_1:23789010-23789029 | Msa0540870:three_prime_UTR | 45.0% | |
| ACCATGTTACCGTTGTCTGT+GGG | + | chr4_1:23789011-23789030 | Msa0540870:three_prime_UTR | 45.0% | |
| GGCGAATTAGGGTTAGGGTT+AGG | - | chr4_1:23786369-23786388 | None:intergenic | 50.0% | |
| ! | CTTGAGCTTTGTGGGTGTGA+AGG | + | chr4_1:23787167-23787186 | Msa0540870:CDS | 50.0% |
| !! | GGGTGTGAAGGGAGTTTTGA+TGG | + | chr4_1:23787179-23787198 | Msa0540870:CDS | 50.0% |
| TCCGGGACTCGATGAGTATT+TGG | + | chr4_1:23787349-23787368 | Msa0540870:CDS | 50.0% | |
| CCCAAATACTCATCGAGTCC+CGG | - | chr4_1:23787353-23787372 | None:intergenic | 50.0% | |
| CCGGGACTCGATGAGTATTT+GGG | + | chr4_1:23787350-23787369 | Msa0540870:CDS | 50.0% | |
| GTTCTTGTCCTGCACTTGAG+AGG | + | chr4_1:23787372-23787391 | Msa0540870:CDS | 50.0% | |
| AAATGCAGCCTCTCAAGTGC+AGG | - | chr4_1:23787383-23787402 | None:intergenic | 50.0% | |
| !! | GCGGGATAAGAAGAGCGTTT+CGG | + | chr4_1:23787418-23787437 | Msa0540870:CDS | 50.0% |
| TCGGCTTTGCAACTGTTTGC+AGG | + | chr4_1:23787513-23787532 | Msa0540870:CDS | 50.0% | |
| CACACAGTATCCCAGGGAAA+GGG | - | chr4_1:23787809-23787828 | None:intergenic | 50.0% | |
| ACACACAGTATCCCAGGGAA+AGG | - | chr4_1:23787810-23787829 | None:intergenic | 50.0% | |
| TTACGCCCAGTTCACCATAG+TGG | + | chr4_1:23788930-23788949 | Msa0540870:three_prime_UTR | 50.0% | |
| AGGGGACCCAATTTCCACTA+TGG | - | chr4_1:23788947-23788966 | None:intergenic | 50.0% | |
| AGCTACAAGCCCACAGACAA+CGG | - | chr4_1:23789023-23789042 | None:intergenic | 50.0% | |
| ! | TTGTGTTGTTGTTGCGGCGG+TGG | - | chr4_1:23786293-23786312 | None:intergenic | 55.0% |
| ATTCTGGGTCGTCGCCGAAT+TGG | + | chr4_1:23786826-23786845 | Msa0540870:CDS | 55.0% | |
| TTAAGGGGAATTGCGGCGTG+TGG | + | chr4_1:23787035-23787054 | Msa0540870:CDS | 55.0% | |
| TAAGGGGAATTGCGGCGTGT+GGG | + | chr4_1:23787036-23787055 | Msa0540870:CDS | 55.0% | |
| !! | GGATGATGGATGGATGGCTG+CGG | + | chr4_1:23787265-23787284 | Msa0540870:CDS | 55.0% |
| TGGTATCCGAGTTCGATCCC+TGG | + | chr4_1:23787718-23787737 | Msa0540870:intron | 55.0% | |
| CCATCACCAGGGATCGAACT+CGG | - | chr4_1:23787727-23787746 | None:intergenic | 55.0% | |
| AGTTTACGGGTCCCTTTCCC+TGG | + | chr4_1:23787795-23787814 | Msa0540870:intron | 55.0% | |
| GTTTACGGGTCCCTTTCCCT+GGG | + | chr4_1:23787796-23787815 | Msa0540870:intron | 55.0% | |
| GCCCACAGACAACGGTAACA+TGG | - | chr4_1:23789015-23789034 | None:intergenic | 55.0% | |
| ! | TGTTGTTGTTGCGGCGGTGG+TGG | - | chr4_1:23786290-23786309 | None:intergenic | 60.0% |
| CCGAGTTCGATCCCTGGTGA+TGG | + | chr4_1:23787724-23787743 | Msa0540870:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 23786233 | 23789098 | 23786233 | ID=Msa0540870;Name=Msa0540870 |
| chr4_1 | mRNA | 23786233 | 23789098 | 23786233 | ID=Msa0540870-mRNA-1;Parent=Msa0540870;Name=Msa0540870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|2|543|494 |
| chr4_1 | exon | 23786233 | 23787534 | 23786233 | ID=Msa0540870-mRNA-1:exon:6525;Parent=Msa0540870-mRNA-1 |
| chr4_1 | exon | 23788288 | 23789098 | 23788288 | ID=Msa0540870-mRNA-1:exon:6526;Parent=Msa0540870-mRNA-1 |
| chr4_1 | five_prime_UTR | 23786233 | 23786317 | 23786233 | ID=Msa0540870-mRNA-1:five_prime_utr;Parent=Msa0540870-mRNA-1 |
| chr4_1 | CDS | 23786318 | 23787534 | 23786318 | ID=Msa0540870-mRNA-1:cds;Parent=Msa0540870-mRNA-1 |
| chr4_1 | CDS | 23788288 | 23788555 | 23788288 | ID=Msa0540870-mRNA-1:cds;Parent=Msa0540870-mRNA-1 |
| chr4_1 | three_prime_UTR | 23788556 | 23789098 | 23788556 | ID=Msa0540870-mRNA-1:three_prime_utr;Parent=Msa0540870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
