AlfalfaGEDB | Msa0160010

M. sativa cultivar zhongmu-4 / Msa0160010

KEGG: K01537
GO: GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
PFAM: PF00122.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160010	KEH28647.1	94.400	125	7	0	3	127	392	516	9.59e-70	236

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160010	sp\|Q9M2L4\|ACA11_ARATH	69.841	126	34	1	1	126	390	511	1.56e-51	179

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160010	A0A072UG28	94.400	125	7	0	3	127	392	516	4.58e-70	236

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011500	Msa0160010	0.806972	6.343356e-50	-8.615850e-47
Msa0022310	Msa0160010	0.805434	1.337555e-49	-8.615850e-47
Msa0022550	Msa0160010	0.813315	2.723401e-51	-8.615850e-47
Msa0027390	Msa0160010	0.830102	3.548026e-55	-8.615850e-47
Msa0045790	Msa0160010	0.811657	6.275527e-51	-8.615850e-47
Msa0046160	Msa0160010	0.808703	2.719155e-50	-8.615850e-47
Msa0060400	Msa0160010	0.812675	3.763271e-51	-8.615850e-47
Msa0077450	Msa0160010	0.800802	1.214975e-48	-8.615850e-47
Msa0101810	Msa0160010	-0.813187	2.906100e-51	-8.615850e-47
Msa0122810	Msa0160010	0.816353	5.777057e-52	-8.615850e-47
Msa0123100	Msa0160010	0.813860	2.067236e-51	-8.615850e-47
Msa0145070	Msa0160010	0.812119	4.975665e-51	-8.615850e-47
Msa0152400	Msa0160010	0.804463	2.134267e-49	-8.615850e-47
Msa0160010	Msa0165300	0.831961	1.240408e-55	-8.615850e-47
Msa0160010	Msa0170140	0.806491	8.015633e-50	-8.615850e-47
Msa0160010	Msa0181230	0.819858	9.313795e-53	-8.615850e-47
Msa0160010	Msa0191250	0.823664	1.226289e-53	-8.615850e-47
Msa0160010	Msa0197660	0.809519	1.818305e-50	-8.615850e-47
Msa0160010	Msa0212990	0.809145	2.186189e-50	-8.615850e-47
Msa0160010	Msa0223690	0.816558	5.199189e-52	-8.615850e-47
Msa0160010	Msa0239800	0.805421	1.346120e-49	-8.615850e-47
Msa0160010	Msa0244860	0.800824	1.202215e-48	-8.615850e-47
Msa0160010	Msa0259500	0.803105	4.086575e-49	-8.615850e-47
Msa0160010	Msa0264780	0.807614	4.638456e-50	-8.615850e-47
Msa0160010	Msa0272730	0.809820	1.566299e-50	-8.615850e-47
Msa0160010	Msa0274360	0.801416	9.097855e-49	-8.615850e-47
Msa0160010	Msa0276920	0.826385	2.793168e-54	-8.615850e-47
Msa0160010	Msa0283450	0.808693	2.732799e-50	-8.615850e-47
Msa0160010	Msa0283520	0.822501	2.290098e-53	-8.615850e-47
Msa0160010	Msa0287650	0.812805	3.523694e-51	-8.615850e-47
Msa0160010	Msa0305700	0.805464	1.318511e-49	-8.615850e-47
Msa0160010	Msa0317510	0.812466	4.181106e-51	-8.615850e-47
Msa0160010	Msa0317730	0.835609	1.519052e-56	-8.615850e-47
Msa0160010	Msa0328070	0.802484	5.488045e-49	-8.615850e-47
Msa0160010	Msa0332000	0.820046	8.436134e-53	-8.615850e-47
Msa0160010	Msa0333720	-0.826066	3.325934e-54	-8.615850e-47
Msa0160010	Msa0334350	0.809234	2.092877e-50	-8.615850e-47
Msa0160010	Msa0345970	0.803835	2.884378e-49	-8.615850e-47
Msa0160010	Msa0356890	-0.827712	1.344303e-54	-8.615850e-47
Msa0160010	Msa0376350	0.804967	1.674809e-49	-8.615850e-47
Msa0160010	Msa0376590	0.805853	1.092259e-49	-8.615850e-47
Msa0160010	Msa0388960	0.818099	2.338849e-52	-8.615850e-47
Msa0160010	Msa0389340	0.805920	1.057649e-49	-8.615850e-47
Msa0160010	Msa0395790	0.809274	2.052129e-50	-8.615850e-47
Msa0160010	Msa0414170	0.806212	9.178389e-50	-8.615850e-47
Msa0160010	Msa0436370	0.813200	2.887146e-51	-8.615850e-47
Msa0160010	Msa0452920	0.803677	3.109622e-49	-8.615850e-47
Msa0160010	Msa0466390	0.817087	3.954567e-52	-8.615850e-47
Msa0160010	Msa0484780	0.815051	1.126985e-51	-8.615850e-47
Msa0160010	Msa0503060	0.815308	9.882482e-52	-8.615850e-47
Msa0160010	Msa0507680	0.803884	2.817289e-49	-8.615850e-47
Msa0160010	Msa0509610	0.825070	5.727952e-54	-8.615850e-47
Msa0160010	Msa0516370	0.806413	8.324656e-50	-8.615850e-47
Msa0160010	Msa0526890	0.800747	1.246425e-48	-8.615850e-47
Msa0160010	Msa0572420	0.805590	1.240291e-49	-8.615850e-47
Msa0160010	Msa0572480	0.810139	1.337511e-50	-8.615850e-47
Msa0160010	Msa0608200	0.804732	1.875854e-49	-8.615850e-47
Msa0160010	Msa0636180	0.807972	3.893205e-50	-8.615850e-47
Msa0160010	Msa0647130	0.809349	1.977176e-50	-8.615850e-47
Msa0160010	Msa0648520	0.832550	8.867022e-56	-8.615850e-47
Msa0160010	Msa0648880	0.800436	1.442625e-48	-8.615850e-47
Msa0160010	Msa0657610	0.801104	1.053904e-48	-8.615850e-47
Msa0160010	Msa0658570	0.810410	1.168566e-50	-8.615850e-47
Msa0160010	Msa0667050	0.808433	3.105094e-50	-8.615850e-47
Msa0160010	Msa0677400	0.805483	1.305879e-49	-8.615850e-47
Msa0160010	Msa0682550	0.812704	3.708939e-51	-8.615850e-47
Msa0160010	Msa0691050	0.853879	1.784969e-61	-8.615850e-47
Msa0160010	Msa0692230	0.807567	4.744877e-50	-8.615850e-47
Msa0160010	Msa0693380	0.814724	1.331968e-51	-8.615850e-47
Msa0160010	Msa0702570	0.810227	1.280319e-50	-8.615850e-47
Msa0160010	Msa0723990	0.807699	4.448615e-50	-8.615850e-47
Msa0160010	Msa0735170	0.808191	3.496520e-50	-8.615850e-47
Msa0160010	Msa0744040	0.811956	5.402231e-51	-8.615850e-47
Msa0160010	Msa0754660	0.808931	2.429646e-50	-8.615850e-47
Msa0160010	Msa0756630	-0.815625	8.400031e-52	-8.615850e-47
Msa0160010	Msa0829620	0.824212	9.123304e-54	-8.615850e-47
Msa0160010	Msa0843780	-0.808945	2.413565e-50	-8.615850e-47
Msa0160010	Msa0844240	0.802908	4.486352e-49	-8.615850e-47
Msa0160010	Msa0850960	0.805182	1.510683e-49	-8.615850e-47
Msa0160010	Msa0856920	0.803752	3.000028e-49	-8.615850e-47
Msa0160010	Msa0863930	0.817545	3.119828e-52	-8.615850e-47
Msa0160010	Msa0867890	0.816528	5.278660e-52	-8.615850e-47
Msa0160010	Msa0873860	0.803060	4.173638e-49	-8.615850e-47
Msa0160010	Msa0906690	0.816694	4.845080e-52	-8.615850e-47
Msa0160010	Msa0908050	0.827616	1.418190e-54	-8.615850e-47
Msa0160010	Msa0926890	0.812834	3.472552e-51	-8.615850e-47
Msa0160010	Msa0969520	0.816932	4.286111e-52	-8.615850e-47
Msa0160010	Msa1010070	0.806455	8.158703e-50	-8.615850e-47
Msa0160010	Msa1027630	0.805069	1.594488e-49	-8.615850e-47
Msa0160010	Msa1080160	0.809852	1.541880e-50	-8.615850e-47
Msa0160010	Msa1082500	0.817776	2.766268e-52	-8.615850e-47
Msa0160010	Msa1102770	0.801784	7.645850e-49	-8.615850e-47
Msa0160010	Msa1109650	0.801938	7.109186e-49	-8.615850e-47
Msa0160010	Msa1118610	0.805600	1.234485e-49	-8.615850e-47
Msa0160010	Msa1118760	0.802453	5.570107e-49	-8.615850e-47
Msa0160010	Msa1127770	0.812842	3.458922e-51	-8.615850e-47
Msa0160010	Msa1139890	0.820494	6.660158e-53	-8.615850e-47
Msa0160010	Msa1151910	0.801162	1.025694e-48	-8.615850e-47
Msa0160010	Msa1152510	0.800178	1.628138e-48	-8.615850e-47
Msa0160010	Msa1158310	0.802542	5.340885e-49	-8.615850e-47
Msa0160010	Msa1158660	0.801311	9.559071e-49	-8.615850e-47
Msa0160010	Msa1179940	0.800051	1.727431e-48	-8.615850e-47
Msa0160010	Msa1179970	0.804413	2.185943e-49	-8.615850e-47
Msa0160010	Msa1222970	0.801804	7.573736e-49	-8.615850e-47
Msa0160010	Msa1224830	0.805859	1.089196e-49	-8.615850e-47
Msa0160010	Msa1224840	0.800232	1.587338e-48	-8.615850e-47
Msa0160010	Msa1231550	0.807505	4.891684e-50	-8.615850e-47
Msa0160010	Msa1238930	0.820384	7.056242e-53	-8.615850e-47
Msa0160010	Msa1264020	0.818081	2.361182e-52	-8.615850e-47
Msa0160010	Msa1267610	0.805683	1.186023e-49	-8.615850e-47
Msa0160010	Msa1270610	0.803067	4.160793e-49	-8.615850e-47
Msa0160010	Msa1297290	0.803128	4.041940e-49	-8.615850e-47
Msa0160010	Msa1313150	0.816547	5.227799e-52	-8.615850e-47
Msa0160010	Msa1320740	0.805492	1.300258e-49	-8.615850e-47
Msa0160010	Msa1331590	0.802986	4.323684e-49	-8.615850e-47
Msa0160010	Msa1332000	0.809845	1.547329e-50	-8.615850e-47
Msa0160010	Msa1346370	0.811438	7.002017e-51	-8.615850e-47
Msa0160010	Msa1348880	0.800972	1.121541e-48	-8.615850e-47
Msa0160010	Msa1376890	0.806353	8.570620e-50	-8.615850e-47
Msa0160010	Msa1379850	0.810274	1.250624e-50	-8.615850e-47
Msa0160010	Msa1384350	0.822505	2.285604e-53	-8.615850e-47
Msa0160010	Msa1385000	0.804794	1.820626e-49	-8.615850e-47
Msa0160010	Msa1408620	-0.822357	2.473095e-53	-8.615850e-47
Msa0160010	Msa1409700	0.803028	4.238455e-49	-8.615850e-47
Msa0160010	Msa1409870	0.808911	2.453907e-50	-8.615850e-47
Msa0160010	Msa1415940	0.829442	5.135683e-55	-8.615850e-47
Msa0160010	Msa1423880	0.816031	6.819646e-52	-8.615850e-47
Msa0160010	Msa1435400	0.805868	1.084429e-49	-8.615850e-47
Msa0160010	Msa1436480	0.805760	1.142657e-49	-8.615850e-47
Msa0160010	Msa1459180	0.803244	3.823259e-49	-8.615850e-47
Msa0160010	Msa1460020	0.827380	1.615090e-54	-8.615850e-47
Msa0160010	Msa1461300	0.813838	2.089613e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160010	MtrunA17_Chr1g0173111	95.200	125	6	0	3	127	392	516	1.19e-73	238
Msa0160010	MtrunA17_Chr8g0382071	84.000	125	20	0	3	127	393	517	1.41e-65	216
Msa0160010	MtrunA17_Chr4g0020551	70.312	128	36	1	2	127	325	452	2.29e-53	181
Msa0160010	MtrunA17_Chr8g0355421	65.079	126	44	0	1	126	384	509	4.52e-48	166
Msa0160010	MtrunA17_Chr5g0401211	64.000	125	43	1	3	127	396	518	6.12e-38	137
Msa0160010	MtrunA17_Chr3g0134771	61.905	126	48	0	1	126	395	520	2.68e-35	130
Msa0160010	MtrunA17_Chr4g0054021	62.205	127	44	1	1	127	319	441	9.41e-35	128
Msa0160010	MtrunA17_Chr6g0456201	43.662	142	73	1	3	144	383	517	1.68e-29	113
Msa0160010	MtrunA17_Chr4g0002331	47.664	107	50	1	19	125	470	570	2.59e-24	99.0
Msa0160010	MtrunA17_Chr8g0340271	77.049	61	14	0	8	68	386	446	6.61e-24	97.4
Msa0160010	MtrunA17_Chr2g0298871	48.039	102	44	2	19	119	457	550	3.90e-22	92.4
Msa0160010	MtrunA17_Chr7g0260401	44.860	107	52	1	19	125	427	526	1.44e-21	90.9
Msa0160010	MtrunA17_Chr2g0334231	70.370	54	16	0	19	72	451	504	4.59e-19	83.6
Msa0160010	MtrunA17_Chr3g0134951	52.564	78	37	0	6	83	291	368	1.50e-13	67.8
Msa0160010	MtrunA17_Chr7g0263361	52.778	72	34	0	6	77	329	400	1.60e-13	67.8
Msa0160010	MtrunA17_Chr8g0346461	52.239	67	32	0	6	72	313	379	5.05e-12	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160010	AT3G57330.1	69.841	126	34	1	1	126	390	511	1.58e-52	179
Msa0160010	AT3G57330.2	69.841	126	34	1	1	126	335	456	1.91e-52	179
Msa0160010	AT2G41560.1	71.200	125	35	1	1	125	390	513	7.42e-50	172
Msa0160010	AT2G41560.2	71.200	125	35	1	1	125	288	411	1.13e-49	171
Msa0160010	AT2G41560.3	71.200	125	35	1	1	125	288	411	1.13e-49	171
Msa0160010	AT2G41560.4	71.200	125	35	1	1	125	288	411	1.13e-49	171
Msa0160010	AT1G27770.2	61.111	126	49	0	1	126	395	520	9.57e-38	137
Msa0160010	AT1G27770.4	61.111	126	49	0	1	126	395	520	9.78e-38	137
Msa0160010	AT1G27770.1	61.111	126	49	0	1	126	395	520	9.78e-38	137
Msa0160010	AT1G27770.3	61.111	126	49	0	1	126	332	457	1.15e-37	137
Msa0160010	AT4G37640.1	63.710	124	43	1	3	126	395	516	8.28e-37	135
Msa0160010	AT2G22950.1	64.516	124	42	1	3	126	396	517	1.85e-36	134
Msa0160010	AT3G22910.1	50.420	119	49	2	12	130	399	507	6.35e-28	109
Msa0160010	AT3G63380.1	48.214	112	51	2	19	130	410	514	3.22e-25	101
Msa0160010	AT4G29900.1	50.000	124	56	2	3	126	423	540	8.10e-24	97.8
Msa0160010	AT4G29900.2	50.000	124	56	2	3	126	423	540	8.10e-24	97.8
Msa0160010	AT5G57110.1	45.536	112	51	2	19	130	439	540	7.18e-22	92.0
Msa0160010	AT5G57110.3	45.536	112	51	2	19	130	439	540	7.18e-22	92.0
Msa0160010	AT5G57110.2	45.536	112	51	2	19	130	439	540	7.18e-22	92.0
Msa0160010	AT3G21180.1	42.056	107	56	1	19	125	452	552	1.73e-21	90.9
Msa0160010	AT1G07810.1	52.778	72	34	0	6	77	327	398	1.69e-13	68.2
Msa0160010	AT1G07670.2	52.778	72	34	0	6	77	327	398	1.69e-13	68.2
Msa0160010	AT1G07670.1	52.778	72	34	0	6	77	327	398	1.69e-13	68.2
Msa0160010	AT1G10130.1	52.632	76	36	0	6	81	291	366	4.28e-13	67.0
Msa0160010	AT4G00900.2	52.239	67	32	0	6	72	312	378	6.97e-12	63.5
Msa0160010	AT4G00900.1	52.239	67	32	0	6	72	312	378	6.97e-12	63.5

Find 32 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGGAATTTGGCTTGGTTTC+AGG	0.141946	1_4:+31789988	Msa0160010:CDS
ATATGGTGGTTGATAAAATT+TGG	0.156993	1_4:+31789783	Msa0160010:CDS
GAATCAGCAATATTGGAATT+TGG	0.218100	1_4:+31789976	Msa0160010:CDS
TCTTTCTGCATGTGAGACTA+TGG	0.268473	1_4:+31789709	Msa0160010:CDS
TATATTTCAGAATACTTCTT+TGG	0.302435	1_4:+31789901	Msa0160010:CDS
AATCTCTGATTTCAACTTAT+CGG	0.303785	1_4:-31789846	None:intergenic
ACCAACAGAATCAGCAATAT+TGG	0.321328	1_4:+31789969	Msa0160010:CDS
AAGGAAAACACGGACAATAC+TGG	0.338137	1_4:+31789942	Msa0160010:CDS
CTCAACCTTAAGTACCTTAC+CGG	0.372509	1_4:-31790037	None:intergenic
ACAGCTAACGGTAATCCTTC+AGG	0.409892	1_4:-31789626	None:intergenic
AGCAATATTGGAATTTGGCT+TGG	0.452620	1_4:+31789981	Msa0160010:CDS
TTCAATGCACAGCGTAGATC+CGG	0.453733	1_4:+31790018	Msa0160010:CDS
TAGATCCGGTAAGGTACTTA+AGG	0.458818	1_4:+31790032	Msa0160010:CDS
TCTGAAATATAGCCTGCAAA+AGG	0.510920	1_4:-31789889	None:intergenic
GAAGTAGTTAAAGACAGAGA+AGG	0.511490	1_4:+31789923	Msa0160010:CDS
TTCTTCCTGTCTGAATTGAA+AGG	0.527349	1_4:-31790060	None:intergenic
TCCAATATTGCTGATTCTGT+TGG	0.527643	1_4:-31789970	None:intergenic
TTTATCAACCACCATATGGT+TGG	0.532379	1_4:-31789777	None:intergenic
AGGAAAACACGGACAATACT+GGG	0.544726	1_4:+31789943	Msa0160010:CDS
CTTTCTGCATGTGAGACTAT+GGG	0.545404	1_4:+31789710	Msa0160010:CDS
AACGTTGACGACCAACCATA+TGG	0.550519	1_4:+31789766	Msa0160010:CDS
TTGAGCCTTTCAATTCAGAC+AGG	0.555436	1_4:+31790055	Msa0160010:CDS
ATAGTTGTTGCGATTCCTGA+AGG	0.565563	1_4:+31789611	Msa0160010:CDS
AGACTAAGTGTTACAGCTAA+CGG	0.576798	1_4:-31789638	None:intergenic
GAATTTGGCTTGGTTTCAGG+TGG	0.579993	1_4:+31789991	Msa0160010:CDS
TGCACAGCGTAGATCCGGTA+AGG	0.587946	1_4:+31790023	Msa0160010:CDS
TGCATTTGCACTGATAACAC+AGG	0.616207	1_4:+31789743	Msa0160010:CDS
GAAAAGACTGTGGAGATGAA+AGG	0.645618	1_4:+31789812	Msa0160010:CDS
TTCAGACAGGAAGAAGATGT+CGG	0.657425	1_4:+31790068	Msa0160010:CDS
TTGGATATGTGAAAAGACTG+TGG	0.658651	1_4:+31789802	Msa0160010:CDS
GTTGACGACCAACCATATGG+TGG	0.691126	1_4:+31789769	Msa0160010:CDS
AAAGACAGAGAAGGAAAACA+CGG	0.697880	1_4:+31789932	Msa0160010:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATATATAATTACTTAATTTG+TGG	+	chr1_4:31789208-31789227	Msa0160010:intron	10.0%
!!!	ATATATAATTACTTAATTTG+TGG	+	chr1_4:31789208-31789227	Msa0160010:intron	10.0%
!!	TCAAAAATAACTAGATAGTA+TGG	+	chr1_4:31789272-31789291	Msa0160010:intron	20.0%
!!	ATATTTATCCAAAATTTCAC+AGG	-	chr1_4:31789413-31789432	None:intergenic	20.0%
!!	GCAATGAAAAAATTAATGAA+TGG	+	chr1_4:31789668-31789687	Msa0160010:CDS	20.0%
!!	ATGAAAAAATTAATGAATGG+CGG	+	chr1_4:31789671-31789690	Msa0160010:CDS	20.0%
!!	TATATTTCAGAATACTTCTT+TGG	+	chr1_4:31789901-31789920	Msa0160010:CDS	20.0%
!!	TCAAAAATAACTAGATAGTA+TGG	+	chr1_4:31789272-31789291	Msa0160010:intron	20.0%
!!	ATATTTATCCAAAATTTCAC+AGG	-	chr1_4:31789413-31789432	None:intergenic	20.0%
!!	GCAATGAAAAAATTAATGAA+TGG	+	chr1_4:31789668-31789687	Msa0160010:CDS	20.0%
!!	ATGAAAAAATTAATGAATGG+CGG	+	chr1_4:31789671-31789690	Msa0160010:CDS	20.0%
!!	TATATTTCAGAATACTTCTT+TGG	+	chr1_4:31789901-31789920	Msa0160010:CDS	20.0%
!	AACTAAACCAGACAAATAAA+TGG	-	chr1_4:31789078-31789097	None:intergenic	25.0%
!!	AAAAGCATACGAAATTGAAA+TGG	-	chr1_4:31789104-31789123	None:intergenic	25.0%
!!!	TTTCGTATGCTTTTTTTATG+TGG	+	chr1_4:31789110-31789129	Msa0160010:intron	25.0%
!!!	ATGCTTTTTTTATGTGGTTA+AGG	+	chr1_4:31789116-31789135	Msa0160010:intron	25.0%
!!!	TGCTTTTTTTATGTGGTTAA+GGG	+	chr1_4:31789117-31789136	Msa0160010:intron	25.0%
!!!	GATTTTATGCTCTTTATTTG+TGG	+	chr1_4:31789152-31789171	Msa0160010:intron	25.0%
!	GATATATAGTAGAGCATAAA+GGG	-	chr1_4:31789236-31789255	None:intergenic	25.0%
!	AGATATATAGTAGAGCATAA+AGG	-	chr1_4:31789237-31789256	None:intergenic	25.0%
!	TGAAAAAATTAATGAATGGC+GGG	+	chr1_4:31789672-31789691	Msa0160010:CDS	25.0%
!!	AAATTTTATCAACCACCATA+TGG	-	chr1_4:31789784-31789803	None:intergenic	25.0%
!!!	ATATGGTGGTTGATAAAATT+TGG	+	chr1_4:31789783-31789802	Msa0160010:CDS	25.0%
!	AATCTCTGATTTCAACTTAT+CGG	-	chr1_4:31789849-31789868	None:intergenic	25.0%
!	AACTAAACCAGACAAATAAA+TGG	-	chr1_4:31789078-31789097	None:intergenic	25.0%
!!	AAAAGCATACGAAATTGAAA+TGG	-	chr1_4:31789104-31789123	None:intergenic	25.0%
!!!	TTTCGTATGCTTTTTTTATG+TGG	+	chr1_4:31789110-31789129	Msa0160010:intron	25.0%
!!!	ATGCTTTTTTTATGTGGTTA+AGG	+	chr1_4:31789116-31789135	Msa0160010:intron	25.0%
!!!	TGCTTTTTTTATGTGGTTAA+GGG	+	chr1_4:31789117-31789136	Msa0160010:intron	25.0%
!!!	GATTTTATGCTCTTTATTTG+TGG	+	chr1_4:31789152-31789171	Msa0160010:intron	25.0%
!	GATATATAGTAGAGCATAAA+GGG	-	chr1_4:31789236-31789255	None:intergenic	25.0%
!	AGATATATAGTAGAGCATAA+AGG	-	chr1_4:31789237-31789256	None:intergenic	25.0%
!	TGAAAAAATTAATGAATGGC+GGG	+	chr1_4:31789672-31789691	Msa0160010:CDS	25.0%
!!	AAATTTTATCAACCACCATA+TGG	-	chr1_4:31789784-31789803	None:intergenic	25.0%
!!!	ATATGGTGGTTGATAAAATT+TGG	+	chr1_4:31789783-31789802	Msa0160010:CDS	25.0%
!	AATCTCTGATTTCAACTTAT+CGG	-	chr1_4:31789849-31789868	None:intergenic	25.0%
	ATTTCCGACTTAATCTTGTT+AGG	+	chr1_4:31788984-31789003	Msa0160010:intron	30.0%
!!	GATCTCAAATTCTGAAGTAT+TGG	-	chr1_4:31789056-31789075	None:intergenic	30.0%
	TTGAGATCCATTTATTTGTC+TGG	+	chr1_4:31789068-31789087	Msa0160010:intron	30.0%
	GAAAAAATTAATGAATGGCG+GGG	+	chr1_4:31789673-31789692	Msa0160010:CDS	30.0%
	GAATCAGCAATATTGGAATT+TGG	+	chr1_4:31789976-31789995	Msa0160010:CDS	30.0%
	ATTTCCGACTTAATCTTGTT+AGG	+	chr1_4:31788984-31789003	Msa0160010:intron	30.0%
!!	GATCTCAAATTCTGAAGTAT+TGG	-	chr1_4:31789056-31789075	None:intergenic	30.0%
	TTGAGATCCATTTATTTGTC+TGG	+	chr1_4:31789068-31789087	Msa0160010:intron	30.0%
	GAAAAAATTAATGAATGGCG+GGG	+	chr1_4:31789673-31789692	Msa0160010:CDS	30.0%
	GAATCAGCAATATTGGAATT+TGG	+	chr1_4:31789976-31789995	Msa0160010:CDS	30.0%
	TCCACCTAACAAGATTAAGT+CGG	-	chr1_4:31788991-31789010	None:intergenic	35.0%
	AGGATTATTCCTGAAGTTAG+TGG	+	chr1_4:31789010-31789029	Msa0160010:intron	35.0%
	TTATGTGGTTAAGGGATACT+TGG	+	chr1_4:31789125-31789144	Msa0160010:intron	35.0%
	CTGTTTGCAATTACTTCATC+TGG	-	chr1_4:31789344-31789363	None:intergenic	35.0%
	CAGATGAAGTAATTGCAAAC+AGG	+	chr1_4:31789342-31789361	Msa0160010:intron	35.0%
	GAAGTAATTGCAAACAGGTT+TGG	+	chr1_4:31789347-31789366	Msa0160010:intron	35.0%
	AGACTAAGTGTTACAGCTAA+CGG	-	chr1_4:31789641-31789660	None:intergenic	35.0%
	TTTATCAACCACCATATGGT+TGG	-	chr1_4:31789780-31789799	None:intergenic	35.0%
	TTGGATATGTGAAAAGACTG+TGG	+	chr1_4:31789802-31789821	Msa0160010:CDS	35.0%
!	TCTGAAATATAGCCTGCAAA+AGG	-	chr1_4:31789892-31789911	None:intergenic	35.0%
	GAAGTAGTTAAAGACAGAGA+AGG	+	chr1_4:31789923-31789942	Msa0160010:CDS	35.0%
	AAAGACAGAGAAGGAAAACA+CGG	+	chr1_4:31789932-31789951	Msa0160010:CDS	35.0%
	ACCAACAGAATCAGCAATAT+TGG	+	chr1_4:31789969-31789988	Msa0160010:CDS	35.0%
!!	TCCAATATTGCTGATTCTGT+TGG	-	chr1_4:31789973-31789992	None:intergenic	35.0%
	AGCAATATTGGAATTTGGCT+TGG	+	chr1_4:31789981-31790000	Msa0160010:CDS	35.0%
	TTCTTCCTGTCTGAATTGAA+AGG	-	chr1_4:31790063-31790082	None:intergenic	35.0%
	TCCACCTAACAAGATTAAGT+CGG	-	chr1_4:31788991-31789010	None:intergenic	35.0%
	AGGATTATTCCTGAAGTTAG+TGG	+	chr1_4:31789010-31789029	Msa0160010:intron	35.0%
	TTATGTGGTTAAGGGATACT+TGG	+	chr1_4:31789125-31789144	Msa0160010:intron	35.0%
	CTGTTTGCAATTACTTCATC+TGG	-	chr1_4:31789344-31789363	None:intergenic	35.0%
	CAGATGAAGTAATTGCAAAC+AGG	+	chr1_4:31789342-31789361	Msa0160010:intron	35.0%
	GAAGTAATTGCAAACAGGTT+TGG	+	chr1_4:31789347-31789366	Msa0160010:intron	35.0%
	AGACTAAGTGTTACAGCTAA+CGG	-	chr1_4:31789641-31789660	None:intergenic	35.0%
	TTTATCAACCACCATATGGT+TGG	-	chr1_4:31789780-31789799	None:intergenic	35.0%
	TTGGATATGTGAAAAGACTG+TGG	+	chr1_4:31789802-31789821	Msa0160010:CDS	35.0%
!	TCTGAAATATAGCCTGCAAA+AGG	-	chr1_4:31789892-31789911	None:intergenic	35.0%
	GAAGTAGTTAAAGACAGAGA+AGG	+	chr1_4:31789923-31789942	Msa0160010:CDS	35.0%
	AAAGACAGAGAAGGAAAACA+CGG	+	chr1_4:31789932-31789951	Msa0160010:CDS	35.0%
	ACCAACAGAATCAGCAATAT+TGG	+	chr1_4:31789969-31789988	Msa0160010:CDS	35.0%
!!	TCCAATATTGCTGATTCTGT+TGG	-	chr1_4:31789973-31789992	None:intergenic	35.0%
	AGCAATATTGGAATTTGGCT+TGG	+	chr1_4:31789981-31790000	Msa0160010:CDS	35.0%
	TTCTTCCTGTCTGAATTGAA+AGG	-	chr1_4:31790063-31790082	None:intergenic	35.0%
	TCCGACTTAATCTTGTTAGG+TGG	+	chr1_4:31788987-31789006	Msa0160010:intron	40.0%
	GACTTAATCTTGTTAGGTGG+AGG	+	chr1_4:31788990-31789009	Msa0160010:intron	40.0%
	CAATTTCAGCCACTAACTTC+AGG	-	chr1_4:31789022-31789041	None:intergenic	40.0%
	CTAGATAGTATGGTCCATGA+TGG	+	chr1_4:31789282-31789301	Msa0160010:intron	40.0%
	TCACCATTGTAAGACCATCA+TGG	-	chr1_4:31789299-31789318	None:intergenic	40.0%
!	ATGATGGTCTTACAATGGTG+AGG	+	chr1_4:31789298-31789317	Msa0160010:intron	40.0%
!	TGCATCGTCCTGTGAAATTT+TGG	+	chr1_4:31789402-31789421	Msa0160010:intron	40.0%
	ATAGTTGTTGCGATTCCTGA+AGG	+	chr1_4:31789611-31789630	Msa0160010:CDS	40.0%
	TCTTTCTGCATGTGAGACTA+TGG	+	chr1_4:31789709-31789728	Msa0160010:CDS	40.0%
	CTTTCTGCATGTGAGACTAT+GGG	+	chr1_4:31789710-31789729	Msa0160010:CDS	40.0%
!	TGCATTTGCACTGATAACAC+AGG	+	chr1_4:31789743-31789762	Msa0160010:CDS	40.0%
	GAAAAGACTGTGGAGATGAA+AGG	+	chr1_4:31789812-31789831	Msa0160010:CDS	40.0%
!!!	AGTTCTAAGCATCCTTTTGC+AGG	+	chr1_4:31789877-31789896	Msa0160010:CDS	40.0%
	AAGGAAAACACGGACAATAC+TGG	+	chr1_4:31789942-31789961	Msa0160010:CDS	40.0%
	AGGAAAACACGGACAATACT+GGG	+	chr1_4:31789943-31789962	Msa0160010:CDS	40.0%
!!	TTGGAATTTGGCTTGGTTTC+AGG	+	chr1_4:31789988-31790007	Msa0160010:CDS	40.0%
!	TAGATCCGGTAAGGTACTTA+AGG	+	chr1_4:31790032-31790051	Msa0160010:CDS	40.0%
	CTCAACCTTAAGTACCTTAC+CGG	-	chr1_4:31790040-31790059	None:intergenic	40.0%
	TTGAGCCTTTCAATTCAGAC+AGG	+	chr1_4:31790055-31790074	Msa0160010:CDS	40.0%
	TTCAGACAGGAAGAAGATGT+CGG	+	chr1_4:31790068-31790087	Msa0160010:CDS	40.0%
	TCCGACTTAATCTTGTTAGG+TGG	+	chr1_4:31788987-31789006	Msa0160010:intron	40.0%
	GACTTAATCTTGTTAGGTGG+AGG	+	chr1_4:31788990-31789009	Msa0160010:intron	40.0%
	CAATTTCAGCCACTAACTTC+AGG	-	chr1_4:31789022-31789041	None:intergenic	40.0%
	CTAGATAGTATGGTCCATGA+TGG	+	chr1_4:31789282-31789301	Msa0160010:intron	40.0%
	TCACCATTGTAAGACCATCA+TGG	-	chr1_4:31789299-31789318	None:intergenic	40.0%
!	ATGATGGTCTTACAATGGTG+AGG	+	chr1_4:31789298-31789317	Msa0160010:intron	40.0%
!	TGCATCGTCCTGTGAAATTT+TGG	+	chr1_4:31789402-31789421	Msa0160010:intron	40.0%
	ATAGTTGTTGCGATTCCTGA+AGG	+	chr1_4:31789611-31789630	Msa0160010:CDS	40.0%
	TCTTTCTGCATGTGAGACTA+TGG	+	chr1_4:31789709-31789728	Msa0160010:CDS	40.0%
	CTTTCTGCATGTGAGACTAT+GGG	+	chr1_4:31789710-31789729	Msa0160010:CDS	40.0%
!	TGCATTTGCACTGATAACAC+AGG	+	chr1_4:31789743-31789762	Msa0160010:CDS	40.0%
	GAAAAGACTGTGGAGATGAA+AGG	+	chr1_4:31789812-31789831	Msa0160010:CDS	40.0%
!!!	AGTTCTAAGCATCCTTTTGC+AGG	+	chr1_4:31789877-31789896	Msa0160010:CDS	40.0%
	AAGGAAAACACGGACAATAC+TGG	+	chr1_4:31789942-31789961	Msa0160010:CDS	40.0%
	AGGAAAACACGGACAATACT+GGG	+	chr1_4:31789943-31789962	Msa0160010:CDS	40.0%
!!	TTGGAATTTGGCTTGGTTTC+AGG	+	chr1_4:31789988-31790007	Msa0160010:CDS	40.0%
!	TAGATCCGGTAAGGTACTTA+AGG	+	chr1_4:31790032-31790051	Msa0160010:CDS	40.0%
	CTCAACCTTAAGTACCTTAC+CGG	-	chr1_4:31790040-31790059	None:intergenic	40.0%
	TTGAGCCTTTCAATTCAGAC+AGG	+	chr1_4:31790055-31790074	Msa0160010:CDS	40.0%
	TTCAGACAGGAAGAAGATGT+CGG	+	chr1_4:31790068-31790087	Msa0160010:CDS	40.0%
!	GGTCCATGATGGTCTTACAA+TGG	+	chr1_4:31789293-31789312	Msa0160010:intron	45.0%
	ACAGCTAACGGTAATCCTTC+AGG	-	chr1_4:31789629-31789648	None:intergenic	45.0%
	AACGTTGACGACCAACCATA+TGG	+	chr1_4:31789766-31789785	Msa0160010:CDS	45.0%
!!	GAATTTGGCTTGGTTTCAGG+TGG	+	chr1_4:31789991-31790010	Msa0160010:CDS	45.0%
	TTCAATGCACAGCGTAGATC+CGG	+	chr1_4:31790018-31790037	Msa0160010:CDS	45.0%
!	GGTCCATGATGGTCTTACAA+TGG	+	chr1_4:31789293-31789312	Msa0160010:intron	45.0%
	ACAGCTAACGGTAATCCTTC+AGG	-	chr1_4:31789629-31789648	None:intergenic	45.0%
	AACGTTGACGACCAACCATA+TGG	+	chr1_4:31789766-31789785	Msa0160010:CDS	45.0%
!!	GAATTTGGCTTGGTTTCAGG+TGG	+	chr1_4:31789991-31790010	Msa0160010:CDS	45.0%
	TTCAATGCACAGCGTAGATC+CGG	+	chr1_4:31790018-31790037	Msa0160010:CDS	45.0%
	GTTGACGACCAACCATATGG+TGG	+	chr1_4:31789769-31789788	Msa0160010:CDS	50.0%
	GTTGACGACCAACCATATGG+TGG	+	chr1_4:31789769-31789788	Msa0160010:CDS	50.0%
	TGCACAGCGTAGATCCGGTA+AGG	+	chr1_4:31790023-31790042	Msa0160010:CDS	55.0%
	TGCACAGCGTAGATCCGGTA+AGG	+	chr1_4:31790023-31790042	Msa0160010:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	31788958	31790096	31788958	ID=Msa0160010;Name=Msa0160010
chr1_4	mRNA	31788958	31790096	31788958	ID=Msa0160010-mRNA-1;Parent=Msa0160010;Name=Msa0160010-mRNA-1;_AED=0.47;_eAED=0.57;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|174
chr1_4	exon	31788958	31788963	31788958	ID=Msa0160010-mRNA-1:exon:10084;Parent=Msa0160010-mRNA-1
chr1_4	exon	31789578	31790096	31789578	ID=Msa0160010-mRNA-1:exon:10085;Parent=Msa0160010-mRNA-1
chr1_4	CDS	31788958	31788963	31788958	ID=Msa0160010-mRNA-1:cds;Parent=Msa0160010-mRNA-1
chr1_4	CDS	31789578	31790096	31789578	ID=Msa0160010-mRNA-1:cds;Parent=Msa0160010-mRNA-1

Gene Sequence

>Msa0160010

ATGTTACTACTAGATTACTTTGCTATTGCTGTAACTATAATAGTTGTTGCGATTCCTGAAGGATTACCGTTAGCTGTAACACTTAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGGCGGGGCACTTGTCAGACATCTTTCTGCATGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACTGATAACACAGGAACGTTGACGACCAACCATATGGTGGTTGATAAAATTTGGATATGTGAAAAGACTGTGGAGATGAAAGGTGATGAAAGTACCGATAAGTTGAAATCAGAGATTTCTGATGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAGAATACTTCTTTGGAAGTAGTTAAAGACAGAGAAGGAAAACACGGACAATACTGGGAACACCAACAGAATCAGCAATATTGGAATTTGGCTTGGTTTCAGGTGGTGATTTCAATGCACAGCGTAGATCCGGTAAGGTACTTAAGGTTGAGCCTTTCAATTCAGACAGGAAGAAGATGTCGGTGCTAG

Protein sequence

>Msa0160010

MLLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNGGALVRHLSACETMGSASCICTDNTGTLTTNHMVVDKIWICEKTVEMKGDESTDKLKSEISDEVLSILLQAIFQNTSLEVVKDREGKHGQYWEHQQNQQYWNLAWFQVVISMHSVDPVRYLRLSLSIQTGRRCRC*