AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080010 MtrunA17_Chr1g0186441 77.663 291 18 2 58 347 3 247 1.25e-119 345
Msa0080010 MtrunA17_Chr1g0168121 68.345 278 72 5 83 347 1 275 1.24e-102 303
Msa0080010 MtrunA17_Chr1g0190051 54.633 313 110 10 59 347 1 305 1.11e-79 245
Msa0080010 MtrunA17_Chr3g0112131 59.910 222 71 5 127 336 86 301 5.68e-68 216
Msa0080010 MtrunA17_Chr5g0443311 56.364 220 76 5 120 339 51 250 7.06e-65 206
Msa0080010 MtrunA17_Chr5g0398531 74.026 154 40 0 120 273 100 253 3.52e-64 206
Msa0080010 MtrunA17_Chr8g0351651 60.262 229 84 6 120 347 86 308 1.31e-63 204
Msa0080010 MtrunA17_Chr7g0250031 50.923 271 108 5 70 328 1 258 7.86e-63 201
Msa0080010 MtrunA17_Chr3g0133051 50.556 180 85 2 112 287 66 245 5.15e-58 189
Msa0080010 MtrunA17_Chr4g0054651 57.789 199 73 3 127 323 83 272 1.01e-57 189
Msa0080010 MtrunA17_Chr5g0435681 67.133 143 47 0 127 269 96 238 1.95e-52 176
Msa0080010 MtrunA17_Chr5g0427311 43.404 235 107 6 85 307 9 229 5.73e-44 151
Msa0080010 MtrunA17_Chr1g0186461 57.303 178 28 4 107 284 39 168 5.63e-39 136
Msa0080010 MtrunA17_Chr3g0094471 36.923 195 97 2 98 266 33 227 1.48e-33 126
Msa0080010 MtrunA17_Chr5g0441851 31.548 168 104 2 111 267 68 235 4.09e-28 109
Msa0080010 MtrunA17_Chr5g0397551 34.375 192 106 7 119 298 103 286 9.61e-23 97.1
Msa0080010 MtrunA17_Chr1g0175001 29.775 178 115 2 119 286 84 261 1.13e-21 93.2
Msa0080010 MtrunA17_Chr4g0028211 32.370 173 105 3 105 267 23 193 1.88e-21 91.7
Msa0080010 MtrunA17_Chr4g0028181 32.075 159 98 2 119 267 50 208 3.62e-21 91.7
Msa0080010 MtrunA17_Chr5g0441901 33.548 155 93 3 118 263 73 226 4.87e-21 90.5
Msa0080010 MtrunA17_Chr5g0441441 36.242 149 87 2 120 261 50 197 2.53e-20 88.6
Msa0080010 MtrunA17_Chr1g0190011 37.500 136 81 2 129 260 88 223 2.92e-20 90.1
Msa0080010 MtrunA17_Chr6g0476061 39.655 116 67 1 147 259 130 245 4.00e-20 89.7
Msa0080010 MtrunA17_Chr1g0161621 31.056 161 99 2 119 267 100 260 1.79e-19 87.4
Msa0080010 MtrunA17_Chr1g0179461 39.474 114 65 2 150 259 148 261 3.99e-19 87.4
Msa0080010 MtrunA17_Chr4g0054661 36.184 152 72 5 120 259 118 256 2.03e-17 82.0
Msa0080010 MtrunA17_Chr7g0247431 35.928 167 98 3 118 278 125 288 2.30e-17 82.0
Msa0080010 MtrunA17_Chr7g0274821 39.823 113 68 0 147 259 143 255 2.75e-17 82.0
Msa0080010 MtrunA17_Chr4g0034501 39.175 97 59 0 118 214 32 128 1.09e-16 77.0
Msa0080010 MtrunA17_Chr8g0351761 35.294 153 91 2 150 298 145 293 2.17e-16 79.3
Msa0080010 MtrunA17_Chr8g0386741 31.944 144 94 3 138 278 157 299 2.53e-16 79.0
Msa0080010 MtrunA17_Chr8g0349091 40.566 106 60 1 113 215 118 223 3.36e-16 78.6
Msa0080010 MtrunA17_Chr7g0245841 47.761 67 35 0 150 216 130 196 9.81e-16 77.0
Msa0080010 MtrunA17_Chr1g0188211 37.931 116 68 2 147 259 134 248 1.73e-15 76.6
Msa0080010 MtrunA17_Chr8g0374021 31.210 157 96 4 151 296 5 160 2.55e-14 70.1
Msa0080010 MtrunA17_Chr4g0027371 38.060 134 72 4 137 259 4 137 3.52e-13 68.6
Msa0080010 MtrunA17_Chr4g0056761 43.284 67 38 0 150 216 147 213 6.11e-13 68.9
Msa0080010 MtrunA17_Chr5g0398621 29.286 140 91 3 150 282 100 238 1.17e-12 67.0
Msa0080010 MtrunA17_Chr6g0476241 38.739 111 66 2 150 260 180 288 3.65e-12 66.2
Msa0080010 MtrunA17_Chr4g0027351 38.333 120 65 4 137 248 4 122 7.41e-12 62.4
Msa0080010 MtrunA17_Chr4g0027331 40.000 105 57 3 150 248 22 126 4.68e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080010 AT4G14465.1 61.486 296 92 7 59 347 1 281 8.91e-104 306
Msa0080010 AT3G04570.1 62.762 239 59 5 59 269 1 237 9.98e-80 246
Msa0080010 AT1G76500.1 63.102 187 55 4 96 271 49 232 8.43e-63 202
Msa0080010 AT2G35270.1 53.247 231 82 5 120 347 78 285 5.89e-62 199
Msa0080010 AT2G45430.1 59.292 226 81 6 120 338 89 310 2.10e-61 199
Msa0080010 AT2G42940.1 64.286 154 55 0 120 273 53 206 1.08e-60 196
Msa0080010 AT4G22810.1 54.357 241 76 5 120 347 105 324 1.84e-60 197
Msa0080010 AT3G60870.1 55.838 197 76 4 77 264 7 201 1.67e-59 192
Msa0080010 AT5G49700.1 41.304 276 119 9 83 347 33 276 5.49e-57 186
Msa0080010 AT4G12050.1 70.323 155 45 1 120 273 118 272 5.89e-57 188
Msa0080010 AT3G55560.1 44.179 335 112 11 59 346 1 307 5.82e-55 182
Msa0080010 AT4G17800.1 55.340 206 66 2 127 326 89 274 2.64e-54 180
Msa0080010 AT4G35390.1 68.000 150 46 1 120 267 63 212 4.30e-50 169
Msa0080010 AT1G20900.1 59.259 189 60 2 98 269 56 244 9.91e-48 164
Msa0080010 AT1G14490.1 49.444 180 79 4 121 290 6 183 9.11e-45 152
Msa0080010 AT1G14490.2 49.444 180 79 4 121 290 25 202 9.16e-45 153
Msa0080010 AT4G17950.1 41.781 146 78 3 120 260 196 339 2.33e-22 97.8
Msa0080010 AT1G63470.1 36.735 147 86 3 120 260 147 292 4.85e-22 96.3
Msa0080010 AT5G62260.2 37.097 124 75 1 147 267 160 283 7.66e-21 91.7
Msa0080010 AT2G45850.1 37.333 150 88 2 119 262 131 280 4.01e-20 90.5
Msa0080010 AT2G45850.2 37.333 150 88 2 119 262 131 280 4.01e-20 90.5
Msa0080010 AT2G33620.1 37.241 145 87 3 118 259 135 278 6.10e-20 90.1
Msa0080010 AT2G33620.4 37.241 145 87 3 118 259 135 278 6.10e-20 90.1
Msa0080010 AT2G33620.2 37.241 145 87 3 118 259 135 278 6.10e-20 90.1
Msa0080010 AT2G33620.3 37.241 145 87 3 118 259 135 278 6.10e-20 90.1
Msa0080010 AT4G12080.1 39.316 117 68 1 150 263 173 289 8.11e-20 89.7
Msa0080010 AT5G62260.1 37.931 116 69 1 147 259 160 275 1.05e-19 89.7
Msa0080010 AT5G62260.3 37.931 116 69 1 147 259 160 275 1.05e-19 89.7
Msa0080010 AT5G51590.1 38.938 113 66 1 150 259 181 293 2.28e-19 89.0
Msa0080010 AT4G25320.1 35.220 159 83 3 121 259 123 281 2.52e-19 88.6
Msa0080010 AT3G04590.2 37.273 110 69 0 150 259 174 283 5.19e-19 87.8
Msa0080010 AT2G45850.3 38.667 150 82 4 119 260 131 278 1.05e-18 85.1
Msa0080010 AT3G04590.1 37.273 110 69 0 150 259 174 283 1.12e-18 85.9
Msa0080010 AT1G63480.5 30.978 184 106 6 120 283 124 306 1.25e-16 80.5
Msa0080010 AT1G63480.7 30.978 184 106 6 120 283 124 306 1.25e-16 80.5
Msa0080010 AT1G63480.4 30.978 184 106 6 120 283 124 306 1.25e-16 80.5
Msa0080010 AT1G63480.3 30.978 184 106 6 120 283 124 306 1.25e-16 80.5
Msa0080010 AT1G63480.6 30.978 184 106 6 120 283 124 306 1.25e-16 80.5
Msa0080010 AT1G63480.2 30.978 184 106 6 120 283 130 312 1.32e-16 80.5
Msa0080010 AT1G63480.1 30.978 184 106 6 120 283 130 312 1.32e-16 80.5
Msa0080010 AT5G46640.1 42.759 145 76 3 120 260 155 296 5.42e-16 79.0
Msa0080010 AT3G61310.1 34.667 150 92 2 119 262 133 282 1.30e-14 74.3
Msa0080010 AT4G00200.2 39.655 116 67 1 150 262 126 241 4.23e-14 72.8
Msa0080010 AT4G00200.1 39.655 116 67 1 150 262 126 241 4.23e-14 72.8
Msa0080010 AT4G22770.2 38.333 120 71 1 150 266 153 272 1.09e-13 71.6
Msa0080010 AT4G22770.1 38.333 120 71 1 150 266 153 272 1.09e-13 71.6

Find 120 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGGTGAGTGGGTTCC+TGG 0.152889 1_2:-58164820 None:intergenic
CCAAATTTGTTGCCTAATAA+TGG 0.209471 1_2:+58165558 Msa0080010:CDS
CCATTATTAGGCAACAAATT+TGG 0.219989 1_2:-58165558 None:intergenic
ACAATTCAAGGAGGGTTATC+TGG 0.264024 1_2:+58164790 Msa0080010:CDS
ACATGGCTCTTCAAAGCATT+TGG 0.272297 1_2:-58165027 None:intergenic
GTTACAAAGATGGGTGGTTT+TGG 0.295281 1_2:-58164994 None:intergenic
CTTGCCTGGGCTGCTGCTCA+TGG 0.299376 1_2:+58165603 Msa0080010:CDS
CCCATCTGCCCTCCATTATT+AGG 0.325156 1_2:-58165570 None:intergenic
AAATACTACAACAGCAGTTC+TGG 0.340855 1_2:+58164753 Msa0080010:CDS
CCACTCAACTCAACTCAATA+AGG 0.342276 1_2:-58165633 None:intergenic
AGTGTACTTGGCTGGAGGTC+AGG 0.342488 1_2:+58165278 Msa0080010:CDS
GGTGCTGTTGTAGCACTTCA+TGG 0.358357 1_2:+58165183 Msa0080010:CDS
CCTGCTCCACCAGGTTCAAC+TGG 0.375523 1_2:+58165249 Msa0080010:CDS
GATCCAGGTGGTCTTCCTCT+TGG 0.385010 1_2:-58164961 None:intergenic
CATGGCTCTTCAAAGCATTT+GGG 0.396581 1_2:-58165026 None:intergenic
TGGGACATGAGGCTCTTGCC+TGG 0.399930 1_2:+58165589 Msa0080010:CDS
GTAGTTGGAGGTTGTGTTGT+TGG 0.411543 1_2:+58165306 Msa0080010:CDS
GGAGGTCAGGGTCAGGTAGT+TGG 0.413964 1_2:+58165291 Msa0080010:CDS
GTGGTCTTCCTCTTGGTCTT+CGG 0.414167 1_2:-58164954 None:intergenic
TGCAACTGATGACCAATTCC+TGG 0.414250 1_2:-58165489 None:intergenic
GGATCGCCTCCACCAGGAAT+TGG 0.416217 1_2:+58165477 Msa0080010:CDS
GTGCAAGGTGGAGGAGCATC+TGG 0.418903 1_2:+58156624 Msa0080010:CDS
CAATTCAAGGAGGGTTATCT+GGG 0.426102 1_2:+58164791 Msa0080010:CDS
CTACCTGGTCCTGCTCCACC+AGG 0.428797 1_2:+58165240 Msa0080010:CDS
TATCATTATCATCGTCATCA+AGG 0.430885 1_2:-58165401 None:intergenic
GCTATCTCTTGTTACAAAGA+TGG 0.435101 1_2:-58165004 None:intergenic
GTGCAAGGTGGAGGAGCGTC+TGG 0.440396 1_2:+58165453 Msa0080010:CDS
GGATCGCATCCATCGAGAAT+TGG 0.441380 1_2:+58156648 Msa0080010:CDS
CTTGGCTGGAGGTCAGGGTC+AGG 0.442843 1_2:+58165284 Msa0080010:CDS
AACTGGTCTTACAGTGTACT+TGG 0.444380 1_2:+58165266 Msa0080010:CDS
AGGAATTGGTCATCAGTTGC+AGG 0.445128 1_2:+58165491 Msa0080010:CDS
GTTGGAACTCTTGTTGCAGT+TGG 0.451198 1_2:+58165324 Msa0080010:CDS
CACTTGGTGAGTGGGTTCCT+GGG 0.452332 1_2:-58164819 None:intergenic
TTGGTCATCAGTTGCAGGGT+GGG 0.456584 1_2:+58165496 Msa0080010:CDS
GCCTAATAATGGAGGGCAGA+TGG 0.462555 1_2:+58165569 Msa0080010:CDS
AATCCTTGGTGGACAATTCA+AGG 0.465438 1_2:+58164778 Msa0080010:CDS
GCGGGAGGTGTGCAAGGTGG+AGG 0.466037 1_2:+58165444 Msa0080010:CDS
CTATCTCTTGTTACAAAGAT+GGG 0.474278 1_2:-58165003 None:intergenic
TGCACACCTCCCGCAGAACC+AGG 0.475741 1_2:-58165435 None:intergenic
AAAGGCATGGAAGAAGGATC+TGG 0.482278 1_2:-58165522 None:intergenic
CCAGTTGAACCTGGTGGAGC+AGG 0.482936 1_2:-58165249 None:intergenic
AATGAAGGGCCTGGTTCTGC+GGG 0.484847 1_2:+58165426 Msa0080010:CDS
GGTTCTGCGGGAGGTGTGCA+AGG 0.486519 1_2:+58165438 Msa0080010:CDS
CTGTTGTAGCACTTCATGGT+AGG 0.488288 1_2:+58165187 Msa0080010:CDS
GTGTACTTGGCTGGAGGTCA+GGG 0.493209 1_2:+58165279 Msa0080010:CDS
GGGACATGAGGCTCTTGCCT+GGG 0.498915 1_2:+58165590 Msa0080010:CDS
TTCTGCTATATCAGCTCCAC+CGG 0.501001 1_2:-58165061 None:intergenic
CCTAATAATGGAGGGCAGAT+GGG 0.501432 1_2:+58165570 Msa0080010:CDS
ATCATTATCATCGTCATCAA+GGG 0.502672 1_2:-58165400 None:intergenic
GTTTAAACCACTTGGTGAGT+GGG 0.503662 1_2:-58164827 None:intergenic
ACTTCAACTGCACCTTCTCT+AGG 0.505701 1_2:-58164925 None:intergenic
AGGTAGAAAAGTCCCGGTTA+AGG 0.506619 1_2:-58165223 None:intergenic
GATGATAATGATAATAATGA+AGG 0.507615 1_2:+58165411 Msa0080010:CDS
TCTTCCATGAGCAGCAGCCC+AGG 0.509624 1_2:-58165607 None:intergenic
GGTCAGGGTCAGGTAGTTGG+AGG 0.515248 1_2:+58165294 Msa0080010:CDS
CAGCAGTTCTGGCTAATCCT+TGG 0.516441 1_2:+58164764 Msa0080010:CDS
GCGAGAGGTGTGCAAGGTGG+AGG 0.519441 1_2:+58156615 Msa0080010:CDS
CTTAGACAACCTTCAGCTCC+TGG 0.520193 1_2:+58165162 Msa0080010:CDS
TTATTAGGCAACAAATTTGG+TGG 0.521583 1_2:-58165555 None:intergenic
TTATACAAAGGCATGGAAGA+AGG 0.526106 1_2:-58165528 None:intergenic
GGTCTTACAGTGTACTTGGC+TGG 0.537231 1_2:+58165270 Msa0080010:CDS
AATGATAATAATGAAGGGCC+TGG 0.537636 1_2:+58165417 Msa0080010:CDS
TGTTTAAACCACTTGGTGAG+TGG 0.539187 1_2:-58164828 None:intergenic
CAGTTCTGGCTAATCCTTGG+TGG 0.541662 1_2:+58164767 Msa0080010:CDS
TGCACACCTCTCGCAGAACT+AGG 0.542378 1_2:-58156606 None:intergenic
TAATGAAGGGCCTGGTTCTG+CGG 0.545608 1_2:+58165425 Msa0080010:CDS
AGAGAAGGTGCAGTTGAAGT+TGG 0.547259 1_2:+58164928 Msa0080010:CDS
TGCTTTGAAGAGCCATGTCA+TGG 0.550949 1_2:+58165032 Msa0080010:CDS
TGGTGTTTGTTTAAACCACT+TGG 0.552489 1_2:-58164835 None:intergenic
GTTTGTGTTCTCAGTGGAAG+TGG 0.555754 1_2:+58165120 Msa0080010:CDS
GAACCTGGTGGAGCAGGACC+AGG 0.556098 1_2:-58165243 None:intergenic
AATTTGTTGCCTAATAATGG+AGG 0.564310 1_2:+58165561 Msa0080010:CDS
GTGTGGCACAATTCGCAAGA+AGG 0.565025 1_2:+58165085 Msa0080010:CDS
TCTGGTGGATCGCCTCCACC+AGG 0.566478 1_2:+58165471 Msa0080010:CDS
TGATTGTTAGGTTTGTGTTG+TGG 0.569261 1_2:-58164855 None:intergenic
AGCCATGTCATGGAGGTAGC+CGG 0.569908 1_2:+58165042 Msa0080010:CDS
GGGTTATCTGGGGTTGACCC+AGG 0.573460 1_2:+58164802 Msa0080010:CDS
GAAGGGCCTGGTTCTGCGGG+AGG 0.573762 1_2:+58165429 Msa0080010:CDS
AACTGATGACCAATTCTCGA+TGG 0.578230 1_2:-58156657 None:intergenic
CGCGGTGTTTGTGTTCTCAG+TGG 0.579327 1_2:+58165114 Msa0080010:CDS
TGATGACCAATTCCTGGTGG+AGG 0.582864 1_2:-58165483 None:intergenic
ACTGTAAGACCAGTTGAACC+TGG 0.584188 1_2:-58165258 None:intergenic
AGACCAAGAGGAAGACCACC+TGG 0.587335 1_2:+58164958 Msa0080010:CDS
AGGACCAGGTAGAAAAGTCC+CGG 0.591266 1_2:-58165229 None:intergenic
TGGCAAATTATACAAAGGCA+TGG 0.593563 1_2:-58165535 None:intergenic
TGGAGGGCAGATGGGACATG+AGG 0.594853 1_2:+58165578 Msa0080010:CDS
TCTGCGGGAGGTGTGCAAGG+TGG 0.595107 1_2:+58165441 Msa0080010:CDS
TTTGGTGGCAAATTATACAA+AGG 0.596262 1_2:-58165540 None:intergenic
ACAACAGCACCAGGAGCTGA+AGG 0.601528 1_2:-58165171 None:intergenic
CACCGGCTACCTCCATGACA+TGG 0.602203 1_2:-58165044 None:intergenic
TGAAGTGCTACAACAGCACC+AGG 0.605157 1_2:-58165180 None:intergenic
ATGATAATGATAATAATGAA+GGG 0.605731 1_2:+58165412 Msa0080010:CDS
ATTTGTTGCCTAATAATGGA+GGG 0.617852 1_2:+58165562 Msa0080010:CDS
TCTCTTGTTACAAAGATGGG+TGG 0.617894 1_2:-58165000 None:intergenic
CAAGGTGGAGGAGCGTCTGG+TGG 0.620899 1_2:+58165456 Msa0080010:CDS
AGTTCTGCGAGAGGTGTGCA+AGG 0.623370 1_2:+58156609 Msa0080010:CDS
GGAATTGGTCATCAGTTGCA+GGG 0.626929 1_2:+58165492 Msa0080010:CDS
CTTGGTGGACAATTCAAGGA+GGG 0.630959 1_2:+58164782 Msa0080010:CDS
AGCTGATATAGCAGAAAGTG+TGG 0.642948 1_2:+58165068 Msa0080010:CDS
CTTACAGTGTACTTGGCTGG+AGG 0.650202 1_2:+58165273 Msa0080010:CDS
TCATTATCATCGTCATCAAG+GGG 0.652162 1_2:-58165399 None:intergenic
ATTGGTCATCAGTTGCAGGG+TGG 0.653304 1_2:+58165495 Msa0080010:CDS
CAAGGTGGAGGAGCATCTGG+TGG 0.659188 1_2:+58156627 Msa0080010:CDS
AACAGAGATGAACCTAGAGA+AGG 0.663205 1_2:+58164913 Msa0080010:CDS
TCTGCGAGAGGTGTGCAAGG+TGG 0.666969 1_2:+58156612 Msa0080010:CDS
GTTGGTAACCGAAGACCAAG+AGG 0.671648 1_2:+58164946 Msa0080010:CDS
CTCAACTCAACTCAATAAGG+TGG 0.676109 1_2:-58165630 None:intergenic
CCAGGAACCCACTCACCAAG+TGG 0.676419 1_2:+58164820 Msa0080010:CDS
GAAAAGCCTAGTTCTGCGAG+AGG 0.680647 1_2:+58156600 Msa0080010:CDS
AGTAACATTAGTAAAACTAG+CGG 0.681112 1_2:-58156535 None:intergenic
AACTGATGACCAATTCCTGG+TGG 0.683488 1_2:-58165486 None:intergenic
CCTCCTTGAATTGTCCACCA+AGG 0.691826 1_2:-58164781 None:intergenic
CATGTCATGGAGGTAGCCGG+TGG 0.697813 1_2:+58165045 Msa0080010:CDS
GTAAGACCAGTTGAACCTGG+TGG 0.698978 1_2:-58165255 None:intergenic
AGTAGCATTAGTAAACGTAG+CGG 0.707477 1_2:-58165364 None:intergenic
TCATTATCATCATCATCACG+TGG 0.712149 1_2:-58156570 None:intergenic
AATTCAAGGAGGGTTATCTG+GGG 0.712203 1_2:+58164792 Msa0080010:CDS
CCTTGGTGGACAATTCAAGG+AGG 0.716947 1_2:+58164781 Msa0080010:CDS
TTTGAAGAGCCATGTCATGG+AGG 0.719459 1_2:+58165035 Msa0080010:CDS
TTCGCAAGAAGGCGTCAACG+CGG 0.746882 1_2:+58165096 Msa0080010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAAAATTTTTATA+AGG - chr1_2:58161919-58161938 None:intergenic 0.0%
!!! CATAGTATATTATTTATTTT+AGG - chr1_2:58157905-58157924 None:intergenic 10.0%
!! TCAATATACTTTATAATATA+TGG + chr1_2:58159093-58159112 Msa0080010:intron 10.0%
!! AAATTTCAAATTGTAAATTA+CGG + chr1_2:58159241-58159260 Msa0080010:intron 10.0%
!! ATATGTTCATTTATAAAAAT+GGG - chr1_2:58159411-58159430 None:intergenic 10.0%
!!! AAAATTAGTTGATTTTTTTA+TGG - chr1_2:58159789-58159808 None:intergenic 10.0%
!! TAATATATCTTAATAGAATT+TGG - chr1_2:58160611-58160630 None:intergenic 10.0%
!!! ATTTTTTTTGCTTATAATTT+AGG - chr1_2:58161233-58161252 None:intergenic 10.0%
!! TTATTAAATATGATAAAAGT+TGG - chr1_2:58161291-58161310 None:intergenic 10.0%
!!! TTTTTTTTTTGCTTATAATA+TGG + chr1_2:58161511-58161530 Msa0080010:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG + chr1_2:58161512-58161531 Msa0080010:intron 10.0%
!! ATATATTACTTAATTAAAAC+TGG + chr1_2:58161685-58161704 Msa0080010:intron 10.0%
!! AAACACATATATTAAATTTA+AGG + chr1_2:58161847-58161866 Msa0080010:intron 10.0%
!! TTATTAATATATTTAGTAAG+CGG - chr1_2:58162047-58162066 None:intergenic 10.0%
!! ATTGATAGATTTATTTATAT+TGG - chr1_2:58162206-58162225 None:intergenic 10.0%
!! TATATTAATCTTCAATTAAT+TGG - chr1_2:58162335-58162354 None:intergenic 10.0%
!!! TTGAAGATTAATATAATTTT+TGG + chr1_2:58162340-58162359 Msa0080010:intron 10.0%
!!! TGAAGATTAATATAATTTTT+GGG + chr1_2:58162341-58162360 Msa0080010:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157421-58157440 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157421-58157440 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157421-58157440 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157421-58157440 None:intergenic 100.0%
!!! ATACAATATTTTAGTTCAAA+GGG - chr1_2:58157961-58157980 None:intergenic 15.0%
!!! AATACAATATTTTAGTTCAA+AGG - chr1_2:58157962-58157981 None:intergenic 15.0%
!! ATGAATAATGAAAAACTAAT+TGG - chr1_2:58157991-58158010 None:intergenic 15.0%
!! TTCTCAAATTTATTTCAAAA+TGG + chr1_2:58158250-58158269 Msa0080010:intron 15.0%
!!! ATTTATTTTCCCAATATTAT+GGG - chr1_2:58159020-58159039 None:intergenic 15.0%
!!! AATTTATTTTCCCAATATTA+TGG - chr1_2:58159021-58159040 None:intergenic 15.0%
!!! TTTTCTATAGAAGAATTTTT+TGG - chr1_2:58159204-58159223 None:intergenic 15.0%
!!! GTAATTTACAATTTGAAATT+TGG - chr1_2:58159242-58159261 None:intergenic 15.0%
!! AATTTCAAATTGTAAATTAC+GGG + chr1_2:58159242-58159261 Msa0080010:intron 15.0%
!! CATATGTTCATTTATAAAAA+TGG - chr1_2:58159412-58159431 None:intergenic 15.0%
!! ATACACATATAATAATCATA+TGG - chr1_2:58159601-58159620 None:intergenic 15.0%
!!! AATATGACTTTATAAACTTT+TGG + chr1_2:58159865-58159884 Msa0080010:intron 15.0%
!! CTACAAATTAAAATTATTGA+AGG - chr1_2:58160166-58160185 None:intergenic 15.0%
!! AGAAAAGAAAATAATATACT+TGG - chr1_2:58160224-58160243 None:intergenic 15.0%
!! ATTCTATTAAGATATATTAG+TGG + chr1_2:58160612-58160631 Msa0080010:intron 15.0%
!! AAAACTTAAATGTAACTTAT+AGG + chr1_2:58160694-58160713 Msa0080010:intron 15.0%
!!! TATGTTTTAGTTTTCTTAAT+AGG + chr1_2:58161477-58161496 Msa0080010:intron 15.0%
!!! TTTTATCGTTTCTTTATATT+TGG - chr1_2:58161819-58161838 None:intergenic 15.0%
!! CCTAAAAAATTATAAACTAT+GGG - chr1_2:58161890-58161909 None:intergenic 15.0%
!! ACCTAAAAAATTATAAACTA+TGG - chr1_2:58161891-58161910 None:intergenic 15.0%
!!! AAAAAAAAAGTGATTTTAGT+TGG + chr1_2:58161981-58162000 Msa0080010:intron 15.0%
!! ATAGTCATAAACAAATTAAA+TGG - chr1_2:58162118-58162137 None:intergenic 15.0%
!!! TGTATTTACTTTCTTATTTA+TGG + chr1_2:58162236-58162255 Msa0080010:intron 15.0%
!!! GAAGATTAATATAATTTTTG+GGG + chr1_2:58162342-58162361 Msa0080010:intron 15.0%
!!! TTGATTAATTAATTAGTCTA+TGG + chr1_2:58162527-58162546 Msa0080010:intron 15.0%
!! TTGTCAAAATATATTGAATT+AGG + chr1_2:58163912-58163931 Msa0080010:intron 15.0%
!! TATTTGTTTGTTTATTCTAT+TGG - chr1_2:58164392-58164411 None:intergenic 15.0%
!! AGAATAAACAAACAAATAAA+TGG + chr1_2:58164394-58164413 Msa0080010:intron 15.0%
!! GAATAAACAAACAAATAAAT+GGG + chr1_2:58164395-58164414 Msa0080010:intron 15.0%
!!! ATGATAATGATAATAATGAA+GGG + chr1_2:58156583-58156602 Msa0080010:CDS 15.0%
!!! TTTTGTAGCAAATTATTCAA+AGG - chr1_2:58156714-58156733 None:intergenic 20.0%
!!! TTCTAAGTAAGATTTTAATG+AGG - chr1_2:58157263-58157282 None:intergenic 20.0%
!! CATACAAAAAAAAAAACTTG+TGG - chr1_2:58157667-58157686 None:intergenic 20.0%
!!! ACATGTATATCTAAAATAAG+AGG + chr1_2:58157738-58157757 Msa0080010:intron 20.0%
!! GATAACATGAATAATTATCA+AGG + chr1_2:58157924-58157943 Msa0080010:intron 20.0%
!! GAACTAAAATATTGTATTTC+AGG + chr1_2:58157964-58157983 Msa0080010:intron 20.0%
!!! TATATATCAAAGTGCTAAAA+TGG - chr1_2:58158098-58158117 None:intergenic 20.0%
!!! TCATCTTTTAAAAGTTCTTT+AGG + chr1_2:58158225-58158244 Msa0080010:intron 20.0%
!!! AGTGAATATTTTCTAAAAGA+GGG - chr1_2:58158297-58158316 None:intergenic 20.0%
!!! TAGTGAATATTTTCTAAAAG+AGG - chr1_2:58158298-58158317 None:intergenic 20.0%
!!! ATATGTCAAAAATGATAATG+AGG - chr1_2:58158567-58158586 None:intergenic 20.0%
!!! TCTTTATTTTCATAAGTTTC+AGG + chr1_2:58158673-58158692 Msa0080010:intron 20.0%
!!! ATTATGTATAAGTTCTCTTT+TGG + chr1_2:58158729-58158748 Msa0080010:intron 20.0%
!!! GAATTTTCATATTCTTACAT+AGG + chr1_2:58158751-58158770 Msa0080010:intron 20.0%
!!! TTTATTTTCCCAATATTATG+GGG - chr1_2:58159019-58159038 None:intergenic 20.0%
!! AAGTATATTGAGTTAGTAAT+TGG - chr1_2:58159084-58159103 None:intergenic 20.0%
!! TTCAATTGATGCATAAATTA+TGG - chr1_2:58159557-58159576 None:intergenic 20.0%
!! GAAGTTATAAAATATATACC+TGG + chr1_2:58159574-58159593 Msa0080010:intron 20.0%
!! TCAAATTATCAACTTTCTTT+GGG + chr1_2:58159658-58159677 Msa0080010:intron 20.0%
!! CATATATTTATTAAGCTTCA+AGG - chr1_2:58160068-58160087 None:intergenic 20.0%
!! AATAAATATATGAGACTTAG+AGG + chr1_2:58160076-58160095 Msa0080010:intron 20.0%
!!! AGTGTTAATTTGTTATCTAA+AGG - chr1_2:58160280-58160299 None:intergenic 20.0%
!! AATTAACACTCATCAATAAA+AGG + chr1_2:58160290-58160309 Msa0080010:intron 20.0%
!!! TTTTTTATGCACTAGATTTT+AGG + chr1_2:58160353-58160372 Msa0080010:intron 20.0%
!! ACTTTGATAGATCTTTATTA+AGG - chr1_2:58160579-58160598 None:intergenic 20.0%
!! TGGATCAAATATATAAAACT+AGG + chr1_2:58160744-58160763 Msa0080010:intron 20.0%
!! TAACAAAACACAATTAGAAA+AGG + chr1_2:58160922-58160941 Msa0080010:intron 20.0%
!! ATATAAAGGAACAAATTATG+TGG + chr1_2:58161130-58161149 Msa0080010:intron 20.0%
!!! TTTTTGCTTATAATTTAGGA+CGG - chr1_2:58161229-58161248 None:intergenic 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG - chr1_2:58161269-58161288 None:intergenic 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG + chr1_2:58161319-58161338 Msa0080010:intron 20.0%
!!! GATGTAAAAACAATTTTCAT+TGG - chr1_2:58161405-58161424 None:intergenic 20.0%
!! TTAAAACTGGAATTTATCAT+TGG + chr1_2:58161698-58161717 Msa0080010:intron 20.0%
!!! CCCATAGTTTATAATTTTTT+AGG + chr1_2:58161887-58161906 Msa0080010:intron 20.0%
!!! CTTTTTCAATGTAAACAAAT+AGG + chr1_2:58162070-58162089 Msa0080010:intron 20.0%
!!! TATTGTCTTGGTAATTTTTA+CGG + chr1_2:58162135-58162154 Msa0080010:intron 20.0%
!! TAGCTCAATGTTTATTATTT+AGG + chr1_2:58162288-58162307 Msa0080010:intron 20.0%
!! AGCTCAATGTTTATTATTTA+GGG + chr1_2:58162289-58162308 Msa0080010:intron 20.0%
!! TATAGTTAAACAAGAAAGTT+AGG + chr1_2:58162492-58162511 Msa0080010:intron 20.0%
!! AAAAAATATCTAATCAACTG+TGG - chr1_2:58162735-58162754 None:intergenic 20.0%
!!! TGTTTTCTTACTTACTTTAT+TGG - chr1_2:58164096-58164115 None:intergenic 20.0%
!!! GATGATAATGATAATAATGA+AGG + chr1_2:58156582-58156601 Msa0080010:CDS 20.0%
! AGTAACATTAGTAAAACTAG+CGG - chr1_2:58156538-58156557 None:intergenic 25.0%
!!! CAAAATTTGTTGCCTAATAA+TGG + chr1_2:58156729-58156748 Msa0080010:intron 25.0%
!!! GAATTTGTCTTGTATTTTGA+AGG + chr1_2:58156886-58156905 Msa0080010:intron 25.0%
! GTTATGAATGATAAACTTAG+TGG - chr1_2:58157211-58157230 None:intergenic 25.0%
!!! AAGTAAAATTTTTGAGCAAC+TGG - chr1_2:58157496-58157515 None:intergenic 25.0%
!! AGTTGCTCAAAAATTTTACT+TGG + chr1_2:58157495-58157514 Msa0080010:intron 25.0%
! ACACAATATTGCATTCATAA+AGG + chr1_2:58157611-58157630 Msa0080010:intron 25.0%
!! TTGATTGGTTAAAATTCACA+TGG + chr1_2:58157782-58157801 Msa0080010:intron 25.0%
!! TGATTGGTTAAAATTCACAT+GGG + chr1_2:58157783-58157802 Msa0080010:intron 25.0%
! AAAATATGAATTGTATGCCT+CGG + chr1_2:58158371-58158390 Msa0080010:intron 25.0%
!! TTTTATATAAAATTCCCCGA+AGG - chr1_2:58158407-58158426 None:intergenic 25.0%
! ACATACAAAAATCCTTGAAA+AGG - chr1_2:58158795-58158814 None:intergenic 25.0%
!! TTATTTTCCCAATATTATGG+GGG - chr1_2:58159018-58159037 None:intergenic 25.0%
! GAGGAGTTGTAAAAAAATAT+TGG - chr1_2:58159141-58159160 None:intergenic 25.0%
!! ACTTGTATATGATAACTTGT+TGG + chr1_2:58159268-58159287 Msa0080010:intron 25.0%
! ATATAATAATCATATGGACC+AGG - chr1_2:58159595-58159614 None:intergenic 25.0%
!!! CAAAGAAAGTTGATAATTTG+AGG - chr1_2:58159659-58159678 None:intergenic 25.0%
! CTCAAATTATCAACTTTCTT+TGG + chr1_2:58159657-58159676 Msa0080010:intron 25.0%
!! CTATATTACGAGACATATTT+TGG - chr1_2:58159987-58160006 None:intergenic 25.0%
! TTCAAGGATATCATTCTAAA+TGG - chr1_2:58160052-58160071 None:intergenic 25.0%
!! AATCACAAAACTCAATTTTG+CGG + chr1_2:58160455-58160474 Msa0080010:intron 25.0%
! GGATTATATATATGAACTCA+TGG + chr1_2:58160724-58160743 Msa0080010:intron 25.0%
! TAGAAAAGGAAAAATTAGAG+AGG + chr1_2:58160936-58160955 Msa0080010:intron 25.0%
! ATGTCGAATAATATGTAAAG+AGG + chr1_2:58161167-58161186 Msa0080010:intron 25.0%
!! ATAATTTGGGACAAAGAAAA+TGG - chr1_2:58161256-58161275 None:intergenic 25.0%
!!! GGTCTTTTTTGCTTATAATT+TGG - chr1_2:58161270-58161289 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG - chr1_2:58161338-58161357 None:intergenic 25.0%
!! TTTTTGCTTATAATATGGGA+CGG + chr1_2:58161516-58161535 Msa0080010:intron 25.0%
! GTGATTAGATAATAACATCA+AGG - chr1_2:58161727-58161746 None:intergenic 25.0%
! TTTGTTTATGACTATTGTCT+TGG + chr1_2:58162123-58162142 Msa0080010:intron 25.0%
!! TTTCAGCAATTGAATTTGTT+TGG + chr1_2:58162263-58162282 Msa0080010:intron 25.0%
!! TTCAGCAATTGAATTTGTTT+GGG + chr1_2:58162264-58162283 Msa0080010:intron 25.0%
!! TATGGTTAGTGGTTTTTAAT+TGG - chr1_2:58162851-58162870 None:intergenic 25.0%
! GAGTGTATATCTTACAATAA+TGG - chr1_2:58162899-58162918 None:intergenic 25.0%
!! ATTTACCCTTTTTATGATCT+GGG + chr1_2:58162982-58163001 Msa0080010:intron 25.0%
! ATTCCAAATGCATAAAAAGT+TGG - chr1_2:58163049-58163068 None:intergenic 25.0%
!! TGATTACATTACATCACTTT+TGG + chr1_2:58163203-58163222 Msa0080010:intron 25.0%
!!! TTTTAGGGTTCAAATACAAT+TGG - chr1_2:58163231-58163250 None:intergenic 25.0%
! GCAAAAATCTCAGTTATTAT+AGG - chr1_2:58163831-58163850 None:intergenic 25.0%
!! ACGAAATGAGTCAATTATTT+TGG + chr1_2:58164009-58164028 Msa0080010:intron 25.0%
! TCCAAATGACTAAGTTATTA+TGG + chr1_2:58164041-58164060 Msa0080010:intron 25.0%
! CCAAATGACTAAGTTATTAT+GGG + chr1_2:58164042-58164061 Msa0080010:intron 25.0%
! TAAGTTATTATGGGACAAAA+AGG + chr1_2:58164051-58164070 Msa0080010:intron 25.0%
! AAGTTATTATGGGACAAAAA+GGG + chr1_2:58164052-58164071 Msa0080010:intron 25.0%
!! TACTCAAAATGATGATGATA+GGG - chr1_2:58164519-58164538 None:intergenic 25.0%
!! TTACTCAAAATGATGATGAT+AGG - chr1_2:58164520-58164539 None:intergenic 25.0%
! AGCTGAAAAAAGAAACAAAA+GGG - chr1_2:58164589-58164608 None:intergenic 25.0%
!!! TTAGTTGTTTTTTGTGATGT+AGG - chr1_2:58164652-58164671 None:intergenic 25.0%
TAGCAAATTATTCAAAGGCA+TGG - chr1_2:58156709-58156728 None:intergenic 30.0%
!! AATTTGTTGCCTAATAATGG+AGG + chr1_2:58156732-58156751 Msa0080010:intron 30.0%
! ATTTGTTGCCTAATAATGGA+GGG + chr1_2:58156733-58156752 Msa0080010:intron 30.0%
GATTTGCCAATTATTTAGAG+AGG + chr1_2:58156826-58156845 Msa0080010:intron 30.0%
TCTCTACCTCTCTAAATAAT+TGG - chr1_2:58156835-58156854 None:intergenic 30.0%
!! TGTCTTGTATTTTGAAGGAT+AGG + chr1_2:58156891-58156910 Msa0080010:intron 30.0%
!! GTCTTGTATTTTGAAGGATA+GGG + chr1_2:58156892-58156911 Msa0080010:intron 30.0%
ACACACTTGTAAAGAGAATA+AGG - chr1_2:58157059-58157078 None:intergenic 30.0%
TATGGTTAGTGGTTCTTAAT+TGG - chr1_2:58157141-58157160 None:intergenic 30.0%
GTTGAAAAAAATCCTAGCAA+AGG + chr1_2:58157291-58157310 Msa0080010:intron 30.0%
TTCTCGTTAAAAATCTTACC+AGG + chr1_2:58157341-58157360 Msa0080010:intron 30.0%
! CTTGGAAGTTACTTTGTAAA+AGG + chr1_2:58157513-58157532 Msa0080010:intron 30.0%
CATTGAAGTGTACAACAAAT+GGG + chr1_2:58158056-58158075 Msa0080010:intron 30.0%
GTGCTAAAATGGTTGTATAT+AGG - chr1_2:58158087-58158106 None:intergenic 30.0%
AAGTTATGAATGAAATGCGA+TGG - chr1_2:58158639-58158658 None:intergenic 30.0%
!!! TTCTTTTGAGATCCTTTTCA+AGG + chr1_2:58158780-58158799 Msa0080010:intron 30.0%
! TGATATGAGCATTAGCATTT+TGG + chr1_2:58158894-58158913 Msa0080010:intron 30.0%
TTTATTCTCCCCCATAATAT+TGG + chr1_2:58159007-58159026 Msa0080010:intron 30.0%
TTATTCTCCCCCATAATATT+GGG + chr1_2:58159008-58159027 Msa0080010:intron 30.0%
! CAATTGATAATCAACCTACT+TGG + chr1_2:58159044-58159063 Msa0080010:intron 30.0%
GGAAATTGATATCGAACATT+AGG - chr1_2:58159438-58159457 None:intergenic 30.0%
!! TGATAAGTATTGAGCGTATA+TGG - chr1_2:58159459-58159478 None:intergenic 30.0%
AAGTTTATTGTTGACAAGAC+CGG - chr1_2:58159845-58159864 None:intergenic 30.0%
ATAAGTGTAGTACAATTCGA+AGG + chr1_2:58159920-58159939 Msa0080010:intron 30.0%
TTCCCCATGTAACATTATAT+TGG + chr1_2:58160129-58160148 Msa0080010:intron 30.0%
AGCCAATATAATGTTACATG+GGG - chr1_2:58160134-58160153 None:intergenic 30.0%
GAGCCAATATAATGTTACAT+GGG - chr1_2:58160135-58160154 None:intergenic 30.0%
AGAGCCAATATAATGTTACA+TGG - chr1_2:58160136-58160155 None:intergenic 30.0%
!! TAACATTATATTGGCTCTTC+TGG + chr1_2:58160138-58160157 Msa0080010:intron 30.0%
CATCAATAAAAGGACATTTG+TGG + chr1_2:58160300-58160319 Msa0080010:intron 30.0%
!! GCAAAATTGAGTTTTGTGAT+TGG - chr1_2:58160456-58160475 None:intergenic 30.0%
AGATATATATCCCGACAAAA+TGG - chr1_2:58160552-58160571 None:intergenic 30.0%
AGATATTGTATGTCATTGAG+TGG - chr1_2:58160664-58160683 None:intergenic 30.0%
ATGTAACTTATAGGAAAACG+AGG + chr1_2:58160703-58160722 Msa0080010:intron 30.0%
!! AGTTGAGCGATTTCATTTTT+CGG - chr1_2:58160973-58160992 None:intergenic 30.0%
CGGTCAATTATGCATAAAAT+TGG - chr1_2:58162027-58162046 None:intergenic 30.0%
! TCAGCAATTGAATTTGTTTG+GGG + chr1_2:58162265-58162284 Msa0080010:intron 30.0%
TGAAACAATTGCACTTATCA+GGG - chr1_2:58162404-58162423 None:intergenic 30.0%
AGAAAGTTAGGTAAGAAGAA+TGG + chr1_2:58162504-58162523 Msa0080010:intron 30.0%
! CATTTACCCTTTTTATGATC+TGG + chr1_2:58162981-58163000 Msa0080010:intron 30.0%
TAGTTCCCAGATCATAAAAA+GGG - chr1_2:58162990-58163009 None:intergenic 30.0%
AAAGAAAACACTGCATGTTA+GGG + chr1_2:58163013-58163032 Msa0080010:intron 30.0%
! ACACCAACTTTTTATGCATT+TGG + chr1_2:58163043-58163062 Msa0080010:intron 30.0%
TAAGAATAACGATACAGTGT+CGG - chr1_2:58163182-58163201 None:intergenic 30.0%
TTGAACCCTAAAATTGAGAA+AGG + chr1_2:58163238-58163257 Msa0080010:intron 30.0%
TGAACCCTAAAATTGAGAAA+GGG + chr1_2:58163239-58163258 Msa0080010:intron 30.0%
! ATGAACTACATGATCTCTTT+TGG + chr1_2:58163400-58163419 Msa0080010:intron 30.0%
ACTTCATTCATATACACAAG+TGG + chr1_2:58163676-58163695 Msa0080010:intron 30.0%
CCCATAATAACTTAGTCATT+TGG - chr1_2:58164045-58164064 None:intergenic 30.0%
TATTTGAGGAGGACAAATTA+AGG - chr1_2:58164219-58164238 None:intergenic 30.0%
AACTAACTAACTATTTGAGG+AGG - chr1_2:58164230-58164249 None:intergenic 30.0%
CGAAACTAACTAACTATTTG+AGG - chr1_2:58164233-58164252 None:intergenic 30.0%
AGAGAATTAGATGCAATTAC+TGG - chr1_2:58164471-58164490 None:intergenic 30.0%
! AAATGATGATGATAGGGTAA+AGG - chr1_2:58164513-58164532 None:intergenic 30.0%
GAGCTGAAAAAAGAAACAAA+AGG - chr1_2:58164590-58164609 None:intergenic 30.0%
TTTGTGATGTAGGAGATATA+TGG - chr1_2:58164642-58164661 None:intergenic 30.0%
CAAAACTAATCAAGCTCAAT+TGG + chr1_2:58164679-58164698 Msa0080010:intron 30.0%
!! CGTGATTTTCATTGATTGTT+AGG - chr1_2:58164870-58164889 None:intergenic 30.0%
CTATCTCTTGTTACAAAGAT+GGG - chr1_2:58165006-58165025 None:intergenic 30.0%
!! TTTGAGATTTTGTCCTTAAC+CGG + chr1_2:58165210-58165229 Msa0080010:CDS 30.0%
ATCATTATCATCGTCATCAA+GGG - chr1_2:58165403-58165422 None:intergenic 30.0%
TATCATTATCATCGTCATCA+AGG - chr1_2:58165404-58165423 None:intergenic 30.0%
! TTTGGTGGCAAATTATACAA+AGG - chr1_2:58165543-58165562 None:intergenic 30.0%
TTATTAGGCAACAAATTTGG+TGG - chr1_2:58165558-58165577 None:intergenic 30.0%
CCATTATTAGGCAACAAATT+TGG - chr1_2:58156732-58156751 None:intergenic 30.0%
!! CCAAATTTGTTGCCTAATAA+TGG + chr1_2:58165558-58165577 Msa0080010:CDS 30.0%
!! AATTTGTTGCCTAATAATGG+AGG + chr1_2:58156732-58156751 Msa0080010:intron 30.0%
! ATTTGTTGCCTAATAATGGA+GGG + chr1_2:58156733-58156752 Msa0080010:intron 30.0%
TCATTATCATCATCATCACG+TGG - chr1_2:58156573-58156592 None:intergenic 35.0%
AGAATTGGTCATCAGTTGTA+GGG + chr1_2:58156663-58156682 Msa0080010:intron 35.0%
! TTATTCAAAGGCATGGAAGA+AGG - chr1_2:58156702-58156721 None:intergenic 35.0%
TACAACTCAACTCAATAAGG+TGG - chr1_2:58156804-58156823 None:intergenic 35.0%
CCATACAACTCAACTCAATA+AGG - chr1_2:58156807-58156826 None:intergenic 35.0%
!! CCTTATTGAGTTGAGTTGTA+TGG + chr1_2:58156804-58156823 Msa0080010:intron 35.0%
ACTAGTGAATGTATGGTTAG+TGG - chr1_2:58157152-58157171 None:intergenic 35.0%
ACTAACCATACATTCACTAG+TGG + chr1_2:58157151-58157170 Msa0080010:intron 35.0%
CTAACCATACATTCACTAGT+GGG + chr1_2:58157152-58157171 Msa0080010:intron 35.0%
TAACCATACATTCACTAGTG+GGG + chr1_2:58157153-58157172 Msa0080010:intron 35.0%
TATAGGAAGGTGGAAGATTA+TGG + chr1_2:58157177-58157196 Msa0080010:intron 35.0%
TTTAATGAGGTGTATCCTGA+TGG - chr1_2:58157250-58157269 None:intergenic 35.0%
! TGTACTCTTTTTCCTTTGCT+AGG - chr1_2:58157306-58157325 None:intergenic 35.0%
TGTGACAATACCATGGTTAA+GGG + chr1_2:58157373-58157392 Msa0080010:intron 35.0%
!! AAAATTGGTCTTCATCCTCT+CGG - chr1_2:58157468-58157487 None:intergenic 35.0%
GAGCAACTGGTATGAAAAAT+TGG - chr1_2:58157483-58157502 None:intergenic 35.0%
ACAGTTGAAAGAATGGAAGA+TGG - chr1_2:58157584-58157603 None:intergenic 35.0%
AACAACACACTCTCTTTGAT+TGG + chr1_2:58157767-58157786 Msa0080010:intron 35.0%
ACATGGGTCCCATATAAATT+TGG + chr1_2:58157799-58157818 Msa0080010:intron 35.0%
GAGACCCACCAAATTTATAT+GGG - chr1_2:58157810-58157829 None:intergenic 35.0%
TGAGACCCACCAAATTTATA+TGG - chr1_2:58157811-58157830 None:intergenic 35.0%
AAAGTGTGTGTTAGAATGTG+TGG + chr1_2:58157866-58157885 Msa0080010:intron 35.0%
!! CCATTTGTTGTACACTTCAA+TGG - chr1_2:58158058-58158077 None:intergenic 35.0%
CCATTGAAGTGTACAACAAA+TGG + chr1_2:58158055-58158074 Msa0080010:intron 35.0%
CCTCGGTAAAATAATTCCTT+CGG + chr1_2:58158388-58158407 Msa0080010:intron 35.0%
CTCGGTAAAATAATTCCTTC+GGG + chr1_2:58158389-58158408 Msa0080010:intron 35.0%
TCGGTAAAATAATTCCTTCG+GGG + chr1_2:58158390-58158409 Msa0080010:intron 35.0%
GATCGTGAATGAGTCAATTA+AGG - chr1_2:58158545-58158564 None:intergenic 35.0%
CTGAAAAAAGTCAACGTTGA+CGG - chr1_2:58158614-58158633 None:intergenic 35.0%
! AGGTACCTGATTAGTTATAC+TGG + chr1_2:58158693-58158712 Msa0080010:intron 35.0%
CAGTTCCAGTATAACTAATC+AGG - chr1_2:58158701-58158720 None:intergenic 35.0%
ATCATTAGAGAAGTCTGTGT+TGG - chr1_2:58158878-58158897 None:intergenic 35.0%
AGACTTATTTACAGCCAAGT+AGG - chr1_2:58159061-58159080 None:intergenic 35.0%
AACAATAGACGTCTGATGAA+TGG + chr1_2:58159376-58159395 Msa0080010:intron 35.0%
CAAATACTCTCACAAACTTC+TGG + chr1_2:58159502-58159521 Msa0080010:intron 35.0%
!! GTTATCTAAAGGTGTCTTGT+TGG - chr1_2:58160269-58160288 None:intergenic 35.0%
AAACTCGAGTTCTCAATTCA+AGG + chr1_2:58160382-58160401 Msa0080010:intron 35.0%
AACTCGAGTTCTCAATTCAA+GGG + chr1_2:58160383-58160402 Msa0080010:intron 35.0%
AAAAACATAGCGAGAGTTTC+AGG + chr1_2:58160417-58160436 Msa0080010:intron 35.0%
! ACTCAATTTTGCGGAATACA+TGG + chr1_2:58160464-58160483 Msa0080010:intron 35.0%
! CTCAATTTTGCGGAATACAT+GGG + chr1_2:58160465-58160484 Msa0080010:intron 35.0%
!! TAATTCGTGAGCCATTTTGT+CGG + chr1_2:58160538-58160557 Msa0080010:intron 35.0%
! CCTTTCTGTGTATGAGTTTT+TGG - chr1_2:58160805-58160824 None:intergenic 35.0%
CCAAAAACTCATACACAGAA+AGG + chr1_2:58160802-58160821 Msa0080010:intron 35.0%
TGATATGATACACGTGAAGA+TGG - chr1_2:58161609-58161628 None:intergenic 35.0%
!!! AGCTAGCAAATTTTTTACGC+AGG + chr1_2:58161791-58161810 Msa0080010:intron 35.0%
!!! GCTAGCAAATTTTTTACGCA+GGG + chr1_2:58161792-58161811 Msa0080010:intron 35.0%
!!! CTAGCAAATTTTTTACGCAG+GGG + chr1_2:58161793-58161812 Msa0080010:intron 35.0%
!!! TATAATTTTTGGGGTAGCCA+AGG + chr1_2:58162351-58162370 Msa0080010:intron 35.0%
GAAACAATTGCACTTATCAG+GGG - chr1_2:58162403-58162422 None:intergenic 35.0%
CTGAAACAATTGCACTTATC+AGG - chr1_2:58162405-58162424 None:intergenic 35.0%
TTCTAGTGACTGATAAGTCT+CGG - chr1_2:58162603-58162622 None:intergenic 35.0%
GTATCAATATTACCTCTCAG+TGG + chr1_2:58162654-58162673 Msa0080010:intron 35.0%
AGTAGTGTTGTACAGTACAA+AGG - chr1_2:58162692-58162711 None:intergenic 35.0%
GTACTGTACAACACTACTAT+TGG + chr1_2:58162694-58162713 Msa0080010:intron 35.0%
TGATCAAAGATAGAGAATGC+TGG + chr1_2:58162802-58162821 Msa0080010:intron 35.0%
AAAACCACTAACCATACGTT+AGG + chr1_2:58162855-58162874 Msa0080010:intron 35.0%
AAACCACTAACCATACGTTA+GGG + chr1_2:58162856-58162875 Msa0080010:intron 35.0%
CTAGTTCCCAGATCATAAAA+AGG - chr1_2:58162991-58163010 None:intergenic 35.0%
GAAAGAAAACACTGCATGTT+AGG + chr1_2:58163012-58163031 Msa0080010:intron 35.0%
GAACCCTAAAATTGAGAAAG+GGG + chr1_2:58163240-58163259 Msa0080010:intron 35.0%
AACCCTAAAATTGAGAAAGG+GGG + chr1_2:58163241-58163260 Msa0080010:intron 35.0%
! TTCCCCCTTTCTCAATTTTA+GGG - chr1_2:58163246-58163265 None:intergenic 35.0%
! ATTCCCCCTTTCTCAATTTT+AGG - chr1_2:58163247-58163266 None:intergenic 35.0%
TACAAAGAACAAAGACACAG+TGG + chr1_2:58163464-58163483 Msa0080010:intron 35.0%
AGTGGCATGCAAAAAATCAA+TGG - chr1_2:58163612-58163631 None:intergenic 35.0%
AATGAGAGAAACTTTGCACT+AGG - chr1_2:58163719-58163738 None:intergenic 35.0%
! AGCTGTATTGTTGTTGACAT+GGG - chr1_2:58164150-58164169 None:intergenic 35.0%
!! ACTTGAGTTGAGTCTTTGAA+AGG + chr1_2:58164342-58164361 Msa0080010:intron 35.0%
! AGTTGAGTCTTTGAAAGGTT+TGG + chr1_2:58164347-58164366 Msa0080010:intron 35.0%
CTGGATGAGAATCAAGTAAA+TGG - chr1_2:58164452-58164471 None:intergenic 35.0%
AAATACTACAACAGCAGTTC+TGG + chr1_2:58164753-58164772 Msa0080010:CDS 35.0%
TGGTGTTTGTTTAAACCACT+TGG - chr1_2:58164838-58164857 None:intergenic 35.0%
TGATTGTTAGGTTTGTGTTG+TGG - chr1_2:58164858-58164877 None:intergenic 35.0%
GCTATCTCTTGTTACAAAGA+TGG - chr1_2:58165007-58165026 None:intergenic 35.0%
! TTGAGATTTTGTCCTTAACC+GGG + chr1_2:58165211-58165230 Msa0080010:CDS 35.0%
AGTAGCATTAGTAAACGTAG+CGG - chr1_2:58165367-58165386 None:intergenic 35.0%
TCATTATCATCGTCATCAAG+GGG - chr1_2:58165402-58165421 None:intergenic 35.0%
AATGATAATAATGAAGGGCC+TGG + chr1_2:58165417-58165436 Msa0080010:CDS 35.0%
! TTATACAAAGGCATGGAAGA+AGG - chr1_2:58165531-58165550 None:intergenic 35.0%
TGGCAAATTATACAAAGGCA+TGG - chr1_2:58165538-58165557 None:intergenic 35.0%
AACTGATGACCAATTCTCGA+TGG - chr1_2:58156660-58156679 None:intergenic 40.0%
GAGAATTGGTCATCAGTTGT+AGG + chr1_2:58156662-58156681 Msa0080010:intron 40.0%
TCAATAAGGTGGTCTTCCAT+GGG - chr1_2:58156793-58156812 None:intergenic 40.0%
TAACCCCACTAGTGAATGTA+TGG - chr1_2:58157159-58157178 None:intergenic 40.0%
ACATTCACTAGTGGGGTTAT+AGG + chr1_2:58157160-58157179 Msa0080010:intron 40.0%
! ATTGTCACACTAGGTTTTCC+TGG - chr1_2:58157362-58157381 None:intergenic 40.0%
AACCTAGTGTGACAATACCA+TGG + chr1_2:58157366-58157385 Msa0080010:intron 40.0%
AACCATGGTATTGTCACACT+AGG - chr1_2:58157371-58157390 None:intergenic 40.0%
GTGTGACAATACCATGGTTA+AGG + chr1_2:58157372-58157391 Msa0080010:intron 40.0%
! GAACTCTTTTCCCTTAACCA+TGG - chr1_2:58157386-58157405 None:intergenic 40.0%
ATGGTTATTTAGTTGAGGGG+GGG - chr1_2:58157443-58157462 None:intergenic 40.0%
GATGGTTATTTAGTTGAGGG+GGG - chr1_2:58157444-58157463 None:intergenic 40.0%
GGATGGTTATTTAGTTGAGG+GGG - chr1_2:58157445-58157464 None:intergenic 40.0%
GGGATGGTTATTTAGTTGAG+GGG - chr1_2:58157446-58157465 None:intergenic 40.0%
GGGGATGGTTATTTAGTTGA+GGG - chr1_2:58157447-58157466 None:intergenic 40.0%
!! AAATTGGTCTTCATCCTCTC+GGG - chr1_2:58157467-58157486 None:intergenic 40.0%
GCATTGCACAGTTGAAAGAA+TGG - chr1_2:58157591-58157610 None:intergenic 40.0%
TGGGTCCCATATAAATTTGG+TGG + chr1_2:58157802-58157821 Msa0080010:intron 40.0%
GGGTCCCATATAAATTTGGT+GGG + chr1_2:58157803-58157822 Msa0080010:intron 40.0%
!! CCGAAGGAATTATTTTACCG+AGG - chr1_2:58158391-58158410 None:intergenic 40.0%
GATAGATTGCAACTTTCACG+TGG + chr1_2:58158475-58158494 Msa0080010:intron 40.0%
TATAGTCAAGATGACCCAAC+CGG + chr1_2:58159823-58159842 Msa0080010:intron 40.0%
TATTGTTGACAAGACCGGTT+GGG - chr1_2:58159840-58159859 None:intergenic 40.0%
TTATTGTTGACAAGACCGGT+TGG - chr1_2:58159841-58159860 None:intergenic 40.0%
GAGTTTCAGGAATAAGCAAG+TGG + chr1_2:58160430-58160449 Msa0080010:intron 40.0%
!! AATTCGTGAGCCATTTTGTC+GGG + chr1_2:58160539-58160558 Msa0080010:intron 40.0%
AACCACTAACCATACGTTAG+GGG + chr1_2:58162857-58162876 Msa0080010:intron 40.0%
!! TTGTTTGTTATCACCGTCGT+TGG - chr1_2:58163303-58163322 None:intergenic 40.0%
ATGACAGTCAGAGATAGTCA+TGG + chr1_2:58163369-58163388 Msa0080010:intron 40.0%
TTGCTCAGATGTATGACAAG+TGG - chr1_2:58163630-58163649 None:intergenic 40.0%
ACTTGTCATACATCTGAGCA+AGG + chr1_2:58163629-58163648 Msa0080010:intron 40.0%
CTTGTCATACATCTGAGCAA+GGG + chr1_2:58163630-58163649 Msa0080010:intron 40.0%
! GCTGTATTGTTGTTGACATG+GGG - chr1_2:58164149-58164168 None:intergenic 40.0%
! GAGCTGTATTGTTGTTGACA+TGG - chr1_2:58164151-58164170 None:intergenic 40.0%
TGATAGGGTAAAGGAAAGTG+AGG - chr1_2:58164504-58164523 None:intergenic 40.0%
GTGAGTGAGCATCTTATGTT+AGG + chr1_2:58164544-58164563 Msa0080010:intron 40.0%
! AATCCTTGGTGGACAATTCA+AGG + chr1_2:58164778-58164797 Msa0080010:CDS 40.0%
ACAATTCAAGGAGGGTTATC+TGG + chr1_2:58164790-58164809 Msa0080010:CDS 40.0%
CAATTCAAGGAGGGTTATCT+GGG + chr1_2:58164791-58164810 Msa0080010:CDS 40.0%
AATTCAAGGAGGGTTATCTG+GGG + chr1_2:58164792-58164811 Msa0080010:CDS 40.0%
! GTTTAAACCACTTGGTGAGT+GGG - chr1_2:58164830-58164849 None:intergenic 40.0%
! TGTTTAAACCACTTGGTGAG+TGG - chr1_2:58164831-58164850 None:intergenic 40.0%
AACAGAGATGAACCTAGAGA+AGG + chr1_2:58164913-58164932 Msa0080010:CDS 40.0%
!!! TTTGGTCTGTTTTTGGATCC+AGG - chr1_2:58164979-58164998 None:intergenic 40.0%
! GTTACAAAGATGGGTGGTTT+TGG - chr1_2:58164997-58165016 None:intergenic 40.0%
TCTCTTGTTACAAAGATGGG+TGG - chr1_2:58165003-58165022 None:intergenic 40.0%
! CATGGCTCTTCAAAGCATTT+GGG - chr1_2:58165029-58165048 None:intergenic 40.0%
! ACATGGCTCTTCAAAGCATT+TGG - chr1_2:58165030-58165049 None:intergenic 40.0%
AGCTGATATAGCAGAAAGTG+TGG + chr1_2:58165068-58165087 Msa0080010:CDS 40.0%
!! AACTGGTCTTACAGTGTACT+TGG + chr1_2:58165266-58165285 Msa0080010:CDS 40.0%
ATTGGTCATCAGTTGTAGGG+TGG + chr1_2:58156666-58156685 Msa0080010:intron 45.0%
! AAAGGCATGGAAGAAGGATC+TGG - chr1_2:58156696-58156715 None:intergenic 45.0%
! CCTAATAATGGAGGGCAGAT+GGG + chr1_2:58156741-58156760 Msa0080010:intron 45.0%
CTCAATAAGGTGGTCTTCCA+TGG - chr1_2:58156794-58156813 None:intergenic 45.0%
GTATCGTGAAGAAGACTGTG+AGG + chr1_2:58156914-58156933 Msa0080010:intron 45.0%
TCACTAGTGGGGTTATAGGA+AGG + chr1_2:58157164-58157183 Msa0080010:intron 45.0%
GGAAGGTGGAAGATTATGGA+TGG + chr1_2:58157181-58157200 Msa0080010:intron 45.0%
TCATTCATAACACTCCCCCT+TGG + chr1_2:58157220-58157239 Msa0080010:intron 45.0%
! TATCCTGATGGACATCCAAG+GGG - chr1_2:58157238-58157257 None:intergenic 45.0%
! GTATCCTGATGGACATCCAA+GGG - chr1_2:58157239-58157258 None:intergenic 45.0%
! TGTATCCTGATGGACATCCA+AGG - chr1_2:58157240-58157259 None:intergenic 45.0%
TGGTTATTTAGTTGAGGGGG+GGG - chr1_2:58157442-58157461 None:intergenic 45.0%
CGGGGATGGTTATTTAGTTG+AGG - chr1_2:58157448-58157467 None:intergenic 45.0%
ACTAAATAACCATCCCCGAG+AGG + chr1_2:58157450-58157469 Msa0080010:intron 45.0%
!! AATTGGTCTTCATCCTCTCG+GGG - chr1_2:58157466-58157485 None:intergenic 45.0%
AGGAAATGAGTCGCTCGTTT+GGG - chr1_2:58159639-58159658 None:intergenic 45.0%
TTTGCGGAATACATGGGAAG+TGG + chr1_2:58160471-58160490 Msa0080010:intron 45.0%
GCTCACGAATTATTCACGAG+TGG - chr1_2:58160530-58160549 None:intergenic 45.0%
!! AGAGTTGATGTTCCACTGAG+AGG - chr1_2:58162669-58162688 None:intergenic 45.0%
ACTAACCATACGTTAGGGGA+CGG + chr1_2:58162861-58162880 Msa0080010:intron 45.0%
ACACTCCTGACATTGCAAGT+TGG + chr1_2:58162913-58162932 Msa0080010:intron 45.0%
CTACTCCAACTTGCAATGTC+AGG - chr1_2:58162921-58162940 None:intergenic 45.0%
TCGAGGGAAGTAGAAAACGT+GGG - chr1_2:58163148-58163167 None:intergenic 45.0%
AGAAAGGGGGAATATGCAGT+GGG + chr1_2:58163254-58163273 Msa0080010:intron 45.0%
ACAACACCATCTGTTTGACG+CGG + chr1_2:58163319-58163338 Msa0080010:intron 45.0%
AGTGAAGCAGAAAACGTGAG+AGG + chr1_2:58163539-58163558 Msa0080010:intron 45.0%
GTGAAGCAGAAAACGTGAGA+GGG + chr1_2:58163540-58163559 Msa0080010:intron 45.0%
AAAACGTGAGAGGGAGAAGA+AGG + chr1_2:58163549-58163568 Msa0080010:intron 45.0%
AAACGTGAGAGGGAGAAGAA+GGG + chr1_2:58163550-58163569 Msa0080010:intron 45.0%
AGAAGAAGGGGAACAGTGAA+AGG + chr1_2:58163563-58163582 Msa0080010:intron 45.0%
! CTTGGTGGACAATTCAAGGA+GGG + chr1_2:58164782-58164801 Msa0080010:CDS 45.0%
ACTTCAACTGCACCTTCTCT+AGG - chr1_2:58164928-58164947 None:intergenic 45.0%
! AGAGAAGGTGCAGTTGAAGT+TGG + chr1_2:58164928-58164947 Msa0080010:CDS 45.0%
!!! GGGTGGTTTTGGTCTGTTTT+TGG - chr1_2:58164986-58165005 None:intergenic 45.0%
!! TGCTTTGAAGAGCCATGTCA+TGG + chr1_2:58165032-58165051 Msa0080010:CDS 45.0%
TTTGAAGAGCCATGTCATGG+AGG + chr1_2:58165035-58165054 Msa0080010:CDS 45.0%
TTCTGCTATATCAGCTCCAC+CGG - chr1_2:58165064-58165083 None:intergenic 45.0%
GTTTGTGTTCTCAGTGGAAG+TGG + chr1_2:58165120-58165139 Msa0080010:CDS 45.0%
CTGTTGTAGCACTTCATGGT+AGG + chr1_2:58165187-58165206 Msa0080010:CDS 45.0%
AGGTAGAAAAGTCCCGGTTA+AGG - chr1_2:58165226-58165245 None:intergenic 45.0%
! TTAACCGGGACTTTTCTACC+TGG + chr1_2:58165225-58165244 Msa0080010:CDS 45.0%
ACTGTAAGACCAGTTGAACC+TGG - chr1_2:58165261-58165280 None:intergenic 45.0%
GTAGTTGGAGGTTGTGTTGT+TGG + chr1_2:58165306-58165325 Msa0080010:CDS 45.0%
GTTGGAACTCTTGTTGCAGT+TGG + chr1_2:58165324-58165343 Msa0080010:CDS 45.0%
AACTGATGACCAATTCCTGG+TGG - chr1_2:58165489-58165508 None:intergenic 45.0%
TGCAACTGATGACCAATTCC+TGG - chr1_2:58165492-58165511 None:intergenic 45.0%
AGGAATTGGTCATCAGTTGC+AGG + chr1_2:58165491-58165510 Msa0080010:CDS 45.0%
GGAATTGGTCATCAGTTGCA+GGG + chr1_2:58165492-58165511 Msa0080010:CDS 45.0%
! AAAGGCATGGAAGAAGGATC+TGG - chr1_2:58156696-58156715 None:intergenic 45.0%
! CCTAATAATGGAGGGCAGAT+GGG + chr1_2:58156741-58156760 Msa0080010:intron 45.0%
!! GAAAAGCCTAGTTCTGCGAG+AGG + chr1_2:58156600-58156619 Msa0080010:CDS 50.0%
GGATCGCATCCATCGAGAAT+TGG + chr1_2:58156648-58156667 Msa0080010:CDS 50.0%
! GCCTAATAATGGAGGGCAGA+TGG + chr1_2:58156740-58156759 Msa0080010:intron 50.0%
CCCATCTGCCCTCCATTATT+AGG - chr1_2:58156744-58156763 None:intergenic 50.0%
CTAGTGGGGTTATAGGAAGG+TGG + chr1_2:58157167-58157186 Msa0080010:intron 50.0%
! ATCCTGATGGACATCCAAGG+GGG - chr1_2:58157237-58157256 None:intergenic 50.0%
TTATTTAGTTGAGGGGGGGG+GGG - chr1_2:58157439-58157458 None:intergenic 50.0%
GTTATTTAGTTGAGGGGGGG+GGG - chr1_2:58157440-58157459 None:intergenic 50.0%
GGTTATTTAGTTGAGGGGGG+GGG - chr1_2:58157441-58157460 None:intergenic 50.0%
TCTCAAATTCGCCTGAAGCG+TGG - chr1_2:58158833-58158852 None:intergenic 50.0%
CTCCTCTAAGCGCATTGCAT+TGG + chr1_2:58159155-58159174 Msa0080010:intron 50.0%
CTCCAATGCAATGCGCTTAG+AGG - chr1_2:58159160-58159179 None:intergenic 50.0%
GGAAATGAGTCGCTCGTTTG+GGG - chr1_2:58159638-58159657 None:intergenic 50.0%
GAGGAAATGAGTCGCTCGTT+TGG - chr1_2:58159640-58159659 None:intergenic 50.0%
CGGAATACATGGGAAGTGGT+GGG + chr1_2:58160475-58160494 Msa0080010:intron 50.0%
GGAATACATGGGAAGTGGTG+GGG + chr1_2:58160476-58160495 Msa0080010:intron 50.0%
!! AAATTTGCTAGCTTCGCCGC+TGG - chr1_2:58161784-58161803 None:intergenic 50.0%
TCATTGACAAGGGGTAGCCT+TGG - chr1_2:58162371-58162390 None:intergenic 50.0%
AGGCTACCCCTTGTCAATGA+AGG + chr1_2:58162371-58162390 Msa0080010:intron 50.0%
GGCTACCCCTTGTCAATGAA+GGG + chr1_2:58162372-58162391 Msa0080010:intron 50.0%
CGTAGCCCTTCATTGACAAG+GGG - chr1_2:58162380-58162399 None:intergenic 50.0%
GCGTAGCCCTTCATTGACAA+GGG - chr1_2:58162381-58162400 None:intergenic 50.0%
GTCCCCTAACGTATGGTTAG+TGG - chr1_2:58162862-58162881 None:intergenic 50.0%
GGGAAGTAGAAAACGTGGGA+GGG - chr1_2:58163144-58163163 None:intergenic 50.0%
AGGGAAGTAGAAAACGTGGG+AGG - chr1_2:58163145-58163164 None:intergenic 50.0%
GTCGAGGGAAGTAGAAAACG+TGG - chr1_2:58163149-58163168 None:intergenic 50.0%
GAGAAAGGGGGAATATGCAG+TGG + chr1_2:58163253-58163272 Msa0080010:intron 50.0%
CTAACTCCACGATCCAACGA+CGG + chr1_2:58163287-58163306 Msa0080010:intron 50.0%
TTATCACCGTCGTTGGATCG+TGG - chr1_2:58163296-58163315 None:intergenic 50.0%
GAACAAAGACACAGTGGTGC+TGG + chr1_2:58163470-58163489 Msa0080010:intron 50.0%
! CGTTTTCTGCTTCACTCCTG+CGG - chr1_2:58163535-58163554 None:intergenic 50.0%
AACGTGAGAGGGAGAAGAAG+GGG + chr1_2:58163551-58163570 Msa0080010:intron 50.0%
TGAGCAAGGGACTCAGAAAC+TGG + chr1_2:58163643-58163662 Msa0080010:intron 50.0%
! CAGCAGTTCTGGCTAATCCT+TGG + chr1_2:58164764-58164783 Msa0080010:CDS 50.0%
! CAGTTCTGGCTAATCCTTGG+TGG + chr1_2:58164767-58164786 Msa0080010:CDS 50.0%
CCTCCTTGAATTGTCCACCA+AGG - chr1_2:58164784-58164803 None:intergenic 50.0%
! CCTTGGTGGACAATTCAAGG+AGG + chr1_2:58164781-58164800 Msa0080010:CDS 50.0%
!! GTTGGTAACCGAAGACCAAG+AGG + chr1_2:58164946-58164965 Msa0080010:CDS 50.0%
! GTGGTCTTCCTCTTGGTCTT+CGG - chr1_2:58164957-58164976 None:intergenic 50.0%
!!! GGTCTGTTTTTGGATCCAGG+TGG - chr1_2:58164976-58164995 None:intergenic 50.0%
GTGTGGCACAATTCGCAAGA+AGG + chr1_2:58165085-58165104 Msa0080010:CDS 50.0%
CTTAGACAACCTTCAGCTCC+TGG + chr1_2:58165162-58165181 Msa0080010:CDS 50.0%
! TGAAGTGCTACAACAGCACC+AGG - chr1_2:58165183-58165202 None:intergenic 50.0%
!! GGTGCTGTTGTAGCACTTCA+TGG + chr1_2:58165183-58165202 Msa0080010:CDS 50.0%
AGGACCAGGTAGAAAAGTCC+CGG - chr1_2:58165232-58165251 None:intergenic 50.0%
GTAAGACCAGTTGAACCTGG+TGG - chr1_2:58165258-58165277 None:intergenic 50.0%
GGTCTTACAGTGTACTTGGC+TGG + chr1_2:58165270-58165289 Msa0080010:CDS 50.0%
CTTACAGTGTACTTGGCTGG+AGG + chr1_2:58165273-58165292 Msa0080010:CDS 50.0%
!! TAATGAAGGGCCTGGTTCTG+CGG + chr1_2:58165425-58165444 Msa0080010:CDS 50.0%
TGATGACCAATTCCTGGTGG+AGG - chr1_2:58165486-58165505 None:intergenic 50.0%
ATTGGTCATCAGTTGCAGGG+TGG + chr1_2:58165495-58165514 Msa0080010:CDS 50.0%
TTGGTCATCAGTTGCAGGGT+GGG + chr1_2:58165496-58165515 Msa0080010:CDS 50.0%
! GCCTAATAATGGAGGGCAGA+TGG + chr1_2:58156740-58156759 Msa0080010:intron 50.0%
CCCATCTGCCCTCCATTATT+AGG - chr1_2:58156744-58156763 None:intergenic 50.0%
TGCACACCTCTCGCAGAACT+AGG - chr1_2:58156609-58156628 None:intergenic 55.0%
! AGTTCTGCGAGAGGTGTGCA+AGG + chr1_2:58156609-58156628 Msa0080010:CDS 55.0%
TATTTAGTTGAGGGGGGGGG+GGG - chr1_2:58157438-58157457 None:intergenic 55.0%
CCTGAAGCGTGGTAGACAGT+CGG - chr1_2:58158822-58158841 None:intergenic 55.0%
GCGGAATACATGGGAAGTGG+TGG + chr1_2:58160474-58160493 Msa0080010:intron 55.0%
! ATGGGAAGTGGTGGGGTACA+TGG + chr1_2:58160483-58160502 Msa0080010:intron 55.0%
! TGGGAAGTGGTGGGGTACAT+GGG + chr1_2:58160484-58160503 Msa0080010:intron 55.0%
GCCATCTGCATAAGTGCCAG+CGG + chr1_2:58161765-58161784 Msa0080010:intron 55.0%
GGCGTAGCCCTTCATTGACA+AGG - chr1_2:58162382-58162401 None:intergenic 55.0%
AACCATACGTTAGGGGACGG+AGG + chr1_2:58162864-58162883 Msa0080010:intron 55.0%
ACCATACGTTAGGGGACGGA+GGG + chr1_2:58162865-58162884 Msa0080010:intron 55.0%
ACACCATCTGTTTGACGCGG+CGG + chr1_2:58163322-58163341 Msa0080010:intron 55.0%
CGGCGGAGGTAACATCATGT+CGG + chr1_2:58163339-58163358 Msa0080010:intron 55.0%
CGGAGGTAACATCATGTCGG+AGG + chr1_2:58163342-58163361 Msa0080010:intron 55.0%
! GACACAGTGGTGCTGGATCA+CGG + chr1_2:58163477-58163496 Msa0080010:intron 55.0%
GGCGGAGTGATTGACCTTCA+CGG + chr1_2:58163498-58163517 Msa0080010:intron 55.0%
! CACTTGGTGAGTGGGTTCCT+GGG - chr1_2:58164822-58164841 None:intergenic 55.0%
AGACCAAGAGGAAGACCACC+TGG + chr1_2:58164958-58164977 Msa0080010:CDS 55.0%
GATCCAGGTGGTCTTCCTCT+TGG - chr1_2:58164964-58164983 None:intergenic 55.0%
AGCCATGTCATGGAGGTAGC+CGG + chr1_2:58165042-58165061 Msa0080010:CDS 55.0%
!! TTCGCAAGAAGGCGTCAACG+CGG + chr1_2:58165096-58165115 Msa0080010:CDS 55.0%
CGCGGTGTTTGTGTTCTCAG+TGG + chr1_2:58165114-58165133 Msa0080010:CDS 55.0%
ACAACAGCACCAGGAGCTGA+AGG - chr1_2:58165174-58165193 None:intergenic 55.0%
AGTGTACTTGGCTGGAGGTC+AGG + chr1_2:58165278-58165297 Msa0080010:CDS 55.0%
GTGTACTTGGCTGGAGGTCA+GGG + chr1_2:58165279-58165298 Msa0080010:CDS 55.0%
!! AATGAAGGGCCTGGTTCTGC+GGG + chr1_2:58165426-58165445 Msa0080010:CDS 55.0%
! TCTGCGAGAGGTGTGCAAGG+TGG + chr1_2:58156612-58156631 Msa0080010:CDS 60.0%
!! GTGCAAGGTGGAGGAGCATC+TGG + chr1_2:58156624-58156643 Msa0080010:CDS 60.0%
!! CAAGGTGGAGGAGCATCTGG+TGG + chr1_2:58156627-58156646 Msa0080010:CDS 60.0%
TGGAGGGCAGATGGGACATG+AGG + chr1_2:58156749-58156768 Msa0080010:intron 60.0%
TGGGACATGAGGCCCTTGAC+TGG + chr1_2:58156760-58156779 Msa0080010:intron 60.0%
GGGACATGAGGCCCTTGACT+GGG + chr1_2:58156761-58156780 Msa0080010:intron 60.0%
ATGGGCAGCAGCCCAGTCAA+GGG - chr1_2:58156775-58156794 None:intergenic 60.0%
CTCCCCCTTGGATGTCCATC+AGG + chr1_2:58157232-58157251 Msa0080010:intron 60.0%
ATTTAGTTGAGGGGGGGGGG+GGG - chr1_2:58157437-58157456 None:intergenic 60.0%
GGTCTTCATCCTCTCGGGGA+TGG - chr1_2:58157462-58157481 None:intergenic 60.0%
CCGACTGTCTACCACGCTTC+AGG + chr1_2:58158819-58158838 Msa0080010:intron 60.0%
! GTGGTGGGGTACATGGGAAG+TGG + chr1_2:58160490-58160509 Msa0080010:intron 60.0%
GCCGCTGGCACTTATGCAGA+TGG - chr1_2:58161769-58161788 None:intergenic 60.0%
TCCCTCCGTCCCCTAACGTA+TGG - chr1_2:58162869-58162888 None:intergenic 60.0%
GTCGGCGATGAAGCAGTCGA+GGG - chr1_2:58163164-58163183 None:intergenic 60.0%
TGTCGGCGATGAAGCAGTCG+AGG - chr1_2:58163165-58163184 None:intergenic 60.0%
! ACAGTGGTGCTGGATCACGG+CGG + chr1_2:58163480-58163499 Msa0080010:intron 60.0%
! GGGTTATCTGGGGTTGACCC+AGG + chr1_2:58164802-58164821 Msa0080010:CDS 60.0%
! CCACTTGGTGAGTGGGTTCC+TGG - chr1_2:58164823-58164842 None:intergenic 60.0%
CCAGGAACCCACTCACCAAG+TGG + chr1_2:58164820-58164839 Msa0080010:CDS 60.0%
! CACCGGCTACCTCCATGACA+TGG - chr1_2:58165047-58165066 None:intergenic 60.0%
CATGTCATGGAGGTAGCCGG+TGG + chr1_2:58165045-58165064 Msa0080010:CDS 60.0%
CCAGTTGAACCTGGTGGAGC+AGG - chr1_2:58165252-58165271 None:intergenic 60.0%
CCTGCTCCACCAGGTTCAAC+TGG + chr1_2:58165249-58165268 Msa0080010:CDS 60.0%
GGAGGTCAGGGTCAGGTAGT+TGG + chr1_2:58165291-58165310 Msa0080010:CDS 60.0%
GGTCAGGGTCAGGTAGTTGG+AGG + chr1_2:58165294-58165313 Msa0080010:CDS 60.0%
GGATCGCCTCCACCAGGAAT+TGG + chr1_2:58165477-58165496 Msa0080010:CDS 60.0%
TGGAGGGCAGATGGGACATG+AGG + chr1_2:58156749-58156768 Msa0080010:intron 60.0%
TGGGACATGAGGCTCTTGCC+TGG + chr1_2:58165589-58165608 Msa0080010:CDS 60.0%
GGGACATGAGGCTCTTGCCT+GGG + chr1_2:58165590-58165609 Msa0080010:CDS 60.0%
TCTTCCATGAGCAGCAGCCC+AGG - chr1_2:58165610-58165629 None:intergenic 60.0%
! GCGAGAGGTGTGCAAGGTGG+AGG + chr1_2:58156615-58156634 Msa0080010:CDS 65.0%
CATGGGCAGCAGCCCAGTCA+AGG - chr1_2:58156776-58156795 None:intergenic 65.0%
CTTGACTGGGCTGCTGCCCA+TGG + chr1_2:58156774-58156793 Msa0080010:intron 65.0%
TTTAGTTGAGGGGGGGGGGG+GGG - chr1_2:58157436-58157455 None:intergenic 65.0%
CCTCCGCCGCGTCAAACAGA+TGG - chr1_2:58163328-58163347 None:intergenic 65.0%
CCATCTGTTTGACGCGGCGG+AGG + chr1_2:58163325-58163344 Msa0080010:intron 65.0%
! CGGCTTAAGCGCTGCCGTGA+AGG - chr1_2:58163515-58163534 None:intergenic 65.0%
CTACCTGGTCCTGCTCCACC+AGG + chr1_2:58165240-58165259 Msa0080010:CDS 65.0%
GAACCTGGTGGAGCAGGACC+AGG - chr1_2:58165246-58165265 None:intergenic 65.0%
CTTGGCTGGAGGTCAGGGTC+AGG + chr1_2:58165284-58165303 Msa0080010:CDS 65.0%
TGCACACCTCCCGCAGAACC+AGG - chr1_2:58165438-58165457 None:intergenic 65.0%
! GGTTCTGCGGGAGGTGTGCA+AGG + chr1_2:58165438-58165457 Msa0080010:CDS 65.0%
! TCTGCGGGAGGTGTGCAAGG+TGG + chr1_2:58165441-58165460 Msa0080010:CDS 65.0%
!! GTGCAAGGTGGAGGAGCGTC+TGG + chr1_2:58165453-58165472 Msa0080010:CDS 65.0%
!! CAAGGTGGAGGAGCGTCTGG+TGG + chr1_2:58165456-58165475 Msa0080010:CDS 65.0%
! TCTGGTGGATCGCCTCCACC+AGG + chr1_2:58165471-58165490 Msa0080010:CDS 65.0%
CTTGCCTGGGCTGCTGCTCA+TGG + chr1_2:58165603-58165622 Msa0080010:CDS 65.0%
TTAGTTGAGGGGGGGGGGGG+GGG - chr1_2:58157435-58157454 None:intergenic 70.0%
CACGGCAGCGCTTAAGCCGC+AGG + chr1_2:58163516-58163535 Msa0080010:intron 70.0%
!! GAAGGGCCTGGTTCTGCGGG+AGG + chr1_2:58165429-58165448 Msa0080010:CDS 70.0%
! GCGGGAGGTGTGCAAGGTGG+AGG + chr1_2:58165444-58165463 Msa0080010:CDS 70.0%
TAGTTGAGGGGGGGGGGGGG+GGG - chr1_2:58157434-58157453 None:intergenic 75.0%
! AGTTGAGGGGGGGGGGGGGG+GGG - chr1_2:58157433-58157452 None:intergenic 80.0%
! TTGAGGGGGGGGGGGGGGGG+GGG - chr1_2:58157431-58157450 None:intergenic 85.0%
! GTTGAGGGGGGGGGGGGGGG+GGG - chr1_2:58157432-58157451 None:intergenic 85.0%
! TGAGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157430-58157449 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157428-58157447 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG - chr1_2:58157429-58157448 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 58156525 58165641 58156525 ID=Msa0080010;Name=Msa0080010
chr1_2 mRNA 58156525 58165641 58156525 ID=Msa0080010-mRNA-1;Parent=Msa0080010;Name=Msa0080010-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0|0.5|2|0|347
chr1_2 exon 58156525 58156679 58156525 ID=Msa0080010-mRNA-1:exon:18527;Parent=Msa0080010-mRNA-1
chr1_2 exon 58164753 58165641 58164753 ID=Msa0080010-mRNA-1:exon:18528;Parent=Msa0080010-mRNA-1
chr1_2 CDS 58156525 58156679 58156525 ID=Msa0080010-mRNA-1:cds;Parent=Msa0080010-mRNA-1
chr1_2 CDS 58164753 58165641 58164753 ID=Msa0080010-mRNA-1:cds;Parent=Msa0080010-mRNA-1
Gene Sequence

>Msa0080010

ATGCTTATTGCCGCTAGTTTTACTAATGTTACTTCTGAGATACTTCCACGTGATGATGATGATAATGATAATAATGAAAAGCCTAGTTCTGCGAGAGGTGTGCAAGGTGGAGGAGCATCTGGTGGATCGCATCCATCGAGAATTGGTCATCAGTTAAATACTACAACAGCAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGGGTTGACCCAGGAACCCACTCACCAAGTGGTTTAAACAAACACCACAACACAAACCTAACAATCAATGAAAATCACGATGAAGAAGAAGACGTTGACGACAACAGAGATGAACCTAGAGAAGGTGCAGTTGAAGTTGGTAACCGAAGACCAAGAGGAAGACCACCTGGATCCAAAAACAGACCAAAACCACCCATCTTTGTAACAAGAGATAGCCCAAATGCTTTGAAGAGCCATGTCATGGAGGTAGCCGGTGGAGCTGATATAGCAGAAAGTGTGGCACAATTCGCAAGAAGGCGTCAACGCGGTGTTTGTGTTCTCAGTGGAAGTGGCTCTGTAGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTTCATGGTAGGTTTGAGATTTTGTCCTTAACCGGGACTTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTTACAGTGTACTTGGCTGGAGGTCAGGGTCAGGTAGTTGGAGGTTGTGTTGTTGGAACTCTTGTTGCAGTTGGATCTGTTATGCTTATTGCCGCTACGTTTACTAATGCTACTTATGAGAGACTTCCCCTTGATGACGATGATAATGATAATAATGAAGGGCCTGGTTCTGCGGGAGGTGTGCAAGGTGGAGGAGCGTCTGGTGGATCGCCTCCACCAGGAATTGGTCATCAGTTGCAGGGTGGGCTTCCAGATCCTTCTTCCATGCCTTTGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCTCTTGCCTGGGCTGCTGCTCATGGAAGACCACCTTATTGA
Protein sequence

>Msa0080010

MLIAASFTNVTSEILPRDDDDNDNNEKPSSARGVQGGGASGGSHPSRIGHQLNTTTAVLANPWWTIQGGLSGVDPGTHSPSGLNKHHNTNLTINENHDEEEDVDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGSVMLIAATFTNATYERLPLDDDDNDNNEGPGSAGGVQGGGASGGSPPPGIGHQLQGGLPDPSSMPLYNLPPNLLPNNGGQMGHEALAWAAAHGRPPY*