Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798720 | MCI02659.1 | 68.667 | 150 | 31 | 3 | 2 | 137 | 19 | 166 | 5.23e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798720 | sp|Q96321|IMPA1_ARATH | 63.758 | 149 | 39 | 3 | 4 | 137 | 384 | 532 | 2.85e-56 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798720 | A0A392NU12 | 68.667 | 150 | 31 | 3 | 2 | 137 | 19 | 166 | 2.50e-62 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047980 | Msa0798720 | 0.810116 | 1.352242e-50 | -8.615850e-47 |
| Msa0073670 | Msa0798720 | 0.808170 | 3.532715e-50 | -8.615850e-47 |
| Msa0094010 | Msa0798720 | 0.805548 | 1.265555e-49 | -8.615850e-47 |
| Msa0101180 | Msa0798720 | 0.800470 | 1.419782e-48 | -8.615850e-47 |
| Msa0115370 | Msa0798720 | 0.805169 | 1.519805e-49 | -8.615850e-47 |
| Msa0639120 | Msa0798720 | 0.805169 | 1.519805e-49 | -8.615850e-47 |
| Msa0663900 | Msa0798720 | 0.802555 | 5.306595e-49 | -8.615850e-47 |
| Msa0664960 | Msa0798720 | 0.818563 | 1.836337e-52 | -8.615850e-47 |
| Msa0687630 | Msa0798720 | 0.816247 | 6.100253e-52 | -8.615850e-47 |
| Msa0797750 | Msa0798720 | 0.848681 | 5.248857e-60 | -8.615850e-47 |
| Msa0798720 | Msa0822170 | 0.828937 | 6.810291e-55 | -8.615850e-47 |
| Msa0798720 | Msa0822180 | 0.805637 | 1.212736e-49 | -8.615850e-47 |
| Msa0798720 | Msa0824640 | 0.829016 | 6.515156e-55 | -8.615850e-47 |
| Msa0798720 | Msa0864010 | 0.825191 | 5.362278e-54 | -8.615850e-47 |
| Msa0798720 | Msa0943170 | 0.825694 | 4.077346e-54 | -8.615850e-47 |
| Msa0798720 | Msa0960830 | 0.811990 | 5.310917e-51 | -8.615850e-47 |
| Msa0798720 | Msa0963020 | 0.805874 | 1.081284e-49 | -8.615850e-47 |
| Msa0798720 | Msa0980940 | 0.819571 | 1.082819e-52 | -8.615850e-47 |
| Msa0798720 | Msa1003440 | 0.815731 | 7.954558e-52 | -8.615850e-47 |
| Msa0798720 | Msa1004420 | 0.801694 | 7.977258e-49 | -8.615850e-47 |
| Msa0798720 | Msa1030930 | 0.815585 | 8.575046e-52 | -8.615850e-47 |
| Msa0798720 | Msa1070050 | 0.819652 | 1.037820e-52 | -8.615850e-47 |
| Msa0798720 | Msa1131560 | 0.805846 | 1.096026e-49 | -8.615850e-47 |
| Msa0798720 | Msa1135810 | -0.809389 | 1.938395e-50 | -8.615850e-47 |
| Msa0798720 | Msa1154490 | 0.803416 | 3.523288e-49 | -8.615850e-47 |
| Msa0798720 | Msa1184370 | 0.829291 | 5.587687e-55 | -8.615850e-47 |
| Msa0798720 | Msa1192850 | 0.813880 | 2.046234e-51 | -8.615850e-47 |
| Msa0798720 | Msa1201830 | 0.801451 | 8.950549e-49 | -8.615850e-47 |
| Msa0798720 | Msa1204850 | 0.803562 | 3.285771e-49 | -8.615850e-47 |
| Msa0798720 | Msa1227690 | 0.823069 | 1.688847e-53 | -8.615850e-47 |
| Msa0798720 | Msa1253810 | 0.822619 | 2.150259e-53 | -8.615850e-47 |
| Msa0798720 | Msa1294840 | 0.815329 | 9.776928e-52 | -8.615850e-47 |
| Msa0798720 | Msa1299360 | 0.805395 | 1.362704e-49 | -8.615850e-47 |
| Msa0798720 | Msa1307950 | 0.803258 | 3.798237e-49 | -8.615850e-47 |
| Msa0798720 | Msa1310690 | 0.817368 | 3.419381e-52 | -8.615850e-47 |
| Msa0798720 | Msa1327490 | 0.814988 | 1.163702e-51 | -8.615850e-47 |
| Msa0798720 | Msa1335940 | 0.808683 | 2.745176e-50 | -8.615850e-47 |
| Msa0798720 | Msa1344850 | 0.850399 | 1.741554e-60 | -8.615850e-47 |
| Msa0798720 | Msa1345450 | 0.823520 | 1.325461e-53 | -8.615850e-47 |
| Msa0798720 | Msa1358430 | 0.817342 | 3.466618e-52 | -8.615850e-47 |
| Msa0798720 | Msa1365150 | 0.800235 | 1.584755e-48 | -8.615850e-47 |
| Msa0798720 | Msa1370860 | 0.804753 | 1.856751e-49 | -8.615850e-47 |
| Msa0798720 | Msa1397940 | 0.805831 | 1.103801e-49 | -8.615850e-47 |
| Msa0798720 | Msa1404190 | 0.823421 | 1.397894e-53 | -8.615850e-47 |
| Msa0798720 | Msa1435750 | 0.802130 | 6.492018e-49 | -8.615850e-47 |
| Msa0798720 | Msa1438640 | 0.812854 | 3.437323e-51 | -8.615850e-47 |
| Msa0798720 | Msa1442850 | 0.805396 | 1.362518e-49 | -8.615850e-47 |
| Msa0798720 | Msa1465080 | 0.833826 | 4.265864e-56 | -8.615850e-47 |
| Msa0155430 | Msa0798720 | 0.804483 | 2.113672e-49 | -8.615850e-47 |
| Msa0174770 | Msa0798720 | 0.802652 | 5.068529e-49 | -8.615850e-47 |
| Msa0199690 | Msa0798720 | 0.808620 | 2.832208e-50 | -8.615850e-47 |
| Msa0236270 | Msa0798720 | 0.818613 | 1.788613e-52 | -8.615850e-47 |
| Msa0394400 | Msa0798720 | 0.809662 | 1.693670e-50 | -8.615850e-47 |
| Msa0413450 | Msa0798720 | 0.804336 | 2.268525e-49 | -8.615850e-47 |
| Msa0416400 | Msa0798720 | 0.802271 | 6.071974e-49 | -8.615850e-47 |
| Msa0431770 | Msa0798720 | 0.805783 | 1.129732e-49 | -8.615850e-47 |
| Msa0439890 | Msa0798720 | 0.800464 | 1.423986e-48 | -8.615850e-47 |
| Msa0474950 | Msa0798720 | 0.802638 | 5.102022e-49 | -8.615850e-47 |
| Msa0481480 | Msa0798720 | 0.824263 | 8.874085e-54 | -8.615850e-47 |
| Msa0284820 | Msa0798720 | 0.805871 | 1.082737e-49 | -8.615850e-47 |
| Msa0291520 | Msa0798720 | 0.827602 | 1.428955e-54 | -8.615850e-47 |
| Msa0310410 | Msa0798720 | 0.811372 | 7.236168e-51 | -8.615850e-47 |
| Msa0505150 | Msa0798720 | 0.820001 | 8.636162e-53 | -8.615850e-47 |
| Msa0552810 | Msa0798720 | 0.820039 | 8.465002e-53 | -8.615850e-47 |
| Msa0560470 | Msa0798720 | 0.825531 | 4.455738e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798720 | MtrunA17_Chr2g0294881 | 70.748 | 147 | 27 | 3 | 4 | 136 | 385 | 529 | 6.66e-65 | 206 |
| Msa0798720 | MtrunA17_Chr1g0192541 | 64.667 | 150 | 36 | 3 | 4 | 138 | 386 | 533 | 1.91e-61 | 197 |
| Msa0798720 | MtrunA17_Chr7g0271871 | 64.430 | 149 | 36 | 3 | 4 | 137 | 386 | 532 | 5.52e-60 | 193 |
| Msa0798720 | MtrunA17_Chr8g0346871 | 66.000 | 150 | 35 | 3 | 4 | 139 | 291 | 438 | 3.67e-58 | 186 |
| Msa0798720 | MtrunA17_Chr4g0004921 | 65.333 | 150 | 32 | 4 | 4 | 139 | 85 | 228 | 1.95e-55 | 173 |
| Msa0798720 | MtrunA17_Chr4g0071961 | 64.844 | 128 | 32 | 2 | 4 | 120 | 24 | 149 | 2.54e-50 | 160 |
| Msa0798720 | MtrunA17_Chr4g0074371 | 67.500 | 120 | 28 | 1 | 4 | 112 | 308 | 427 | 4.01e-50 | 165 |
| Msa0798720 | MtrunA17_Chr4g0075691 | 67.742 | 124 | 27 | 2 | 5 | 117 | 307 | 428 | 5.61e-49 | 164 |
| Msa0798720 | MtrunA17_Chr4g0075701 | 65.625 | 128 | 29 | 2 | 4 | 120 | 319 | 442 | 6.80e-49 | 163 |
| Msa0798720 | MtrunA17_Chr4g0068051 | 57.931 | 145 | 44 | 4 | 4 | 136 | 389 | 528 | 1.03e-47 | 160 |
| Msa0798720 | MtrunA17_Chr4g0075651 | 63.415 | 123 | 32 | 2 | 4 | 115 | 28 | 148 | 6.21e-46 | 146 |
| Msa0798720 | MtrunA17_Chr4g0074081 | 49.359 | 156 | 32 | 1 | 4 | 112 | 306 | 461 | 1.78e-39 | 137 |
| Msa0798720 | MtrunA17_Chr1g0174791 | 55.833 | 120 | 42 | 2 | 2 | 110 | 180 | 299 | 1.39e-36 | 127 |
| Msa0798720 | MtrunA17_Chr7g0271821 | 44.915 | 118 | 53 | 2 | 4 | 110 | 438 | 554 | 2.80e-25 | 99.8 |
| Msa0798720 | MtrunA17_Chr4g0075601 | 52.525 | 99 | 23 | 2 | 5 | 79 | 24 | 122 | 6.51e-25 | 92.8 |
| Msa0798720 | MtrunA17_Chr7g0271831 | 42.857 | 112 | 56 | 3 | 4 | 115 | 310 | 413 | 9.28e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798720 | AT3G06720.1 | 63.758 | 149 | 39 | 3 | 4 | 137 | 384 | 532 | 2.89e-57 | 186 |
| Msa0798720 | AT3G06720.2 | 63.758 | 149 | 39 | 3 | 4 | 137 | 384 | 532 | 2.89e-57 | 186 |
| Msa0798720 | AT4G16143.2 | 62.162 | 148 | 39 | 3 | 4 | 136 | 389 | 534 | 1.26e-54 | 179 |
| Msa0798720 | AT4G16143.1 | 62.162 | 148 | 39 | 3 | 4 | 136 | 389 | 534 | 1.26e-54 | 179 |
| Msa0798720 | AT1G09270.3 | 60.000 | 135 | 42 | 2 | 4 | 126 | 309 | 443 | 1.74e-44 | 151 |
| Msa0798720 | AT1G09270.2 | 60.000 | 135 | 42 | 2 | 4 | 126 | 391 | 525 | 1.99e-44 | 152 |
| Msa0798720 | AT1G09270.1 | 60.000 | 135 | 42 | 2 | 4 | 126 | 391 | 525 | 1.99e-44 | 152 |
| Msa0798720 | AT4G02150.1 | 53.793 | 145 | 54 | 3 | 4 | 136 | 387 | 530 | 9.27e-44 | 150 |
| Msa0798720 | AT1G02690.1 | 53.333 | 150 | 53 | 3 | 4 | 136 | 388 | 537 | 2.82e-43 | 149 |
| Msa0798720 | AT1G02690.2 | 53.333 | 150 | 53 | 3 | 4 | 136 | 389 | 538 | 2.98e-43 | 149 |
| Msa0798720 | AT1G32880.1 | 51.240 | 121 | 51 | 1 | 4 | 116 | 63 | 183 | 1.63e-36 | 124 |
| Msa0798720 | AT5G49310.1 | 60.177 | 113 | 37 | 1 | 4 | 108 | 382 | 494 | 5.62e-36 | 129 |
| Msa0798720 | AT5G49305.5 | 49.587 | 121 | 53 | 1 | 3 | 115 | 263 | 383 | 4.04e-33 | 120 |
| Msa0798720 | AT5G49305.3 | 49.587 | 121 | 53 | 1 | 3 | 115 | 263 | 383 | 4.04e-33 | 120 |
| Msa0798720 | AT5G49305.4 | 49.587 | 121 | 53 | 1 | 3 | 115 | 263 | 383 | 4.04e-33 | 120 |
| Msa0798720 | AT5G49305.1 | 49.587 | 121 | 53 | 1 | 3 | 115 | 263 | 383 | 4.04e-33 | 120 |
| Msa0798720 | AT5G49305.2 | 49.587 | 121 | 53 | 1 | 3 | 115 | 263 | 383 | 4.04e-33 | 120 |
| Msa0798720 | AT3G05720.1 | 49.580 | 119 | 42 | 1 | 4 | 104 | 372 | 490 | 4.32e-32 | 119 |
| Msa0798720 | AT3G05720.2 | 49.580 | 119 | 42 | 1 | 4 | 104 | 372 | 490 | 4.32e-32 | 119 |
| Msa0798720 | AT5G52000.1 | 51.376 | 109 | 44 | 2 | 5 | 104 | 313 | 421 | 2.76e-26 | 102 |
Find 28 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATTCTCAAGACATAT+TGG | 0.331681 | 5_3:-11584627 | Msa0798720:CDS |
| TACAAGGTACTTGGCGAGCC+AGG | 0.363447 | 5_3:-11584874 | Msa0798720:intron |
| TCACGTACTTGATTTGTGCC+TGG | 0.371058 | 5_3:+11584984 | None:intergenic |
| ACAGCAACAATTGTTGAATC+AGG | 0.374720 | 5_3:+11584816 | None:intergenic |
| GATAGATAATAACAAGGGTT+TGG | 0.407491 | 5_3:-11584704 | Msa0798720:CDS |
| ATTGTTGCTGTCTGTTTAGA+AGG | 0.420778 | 5_3:-11584804 | Msa0798720:CDS |
| CTATGGAGGCAGTGACCTTC+CGG | 0.424887 | 5_3:-11584542 | Msa0798720:CDS |
| CACGTACTTGATTTGTGCCT+GGG | 0.433056 | 5_3:+11584985 | None:intergenic |
| CCAGGCAATGGTTCTCAACC+TGG | 0.441909 | 5_3:-11584571 | Msa0798720:CDS |
| TGTTGTTATTACAAGGTACT+TGG | 0.449681 | 5_3:-11584883 | Msa0798720:intron |
| CCAGGTTGAGAACCATTGCC+TGG | 0.484326 | 5_3:+11584571 | None:intergenic |
| CTGCTGAAATTGAATCTGTC+CGG | 0.490243 | 5_3:+11584523 | None:intergenic |
| TATTCTCAAGACATATTGGT+TGG | 0.495228 | 5_3:-11584623 | Msa0798720:CDS |
| GCTCTCTCTAATGCTGCATC+TGG | 0.498170 | 5_3:-11585013 | Msa0798720:CDS |
| TGCTGCATCTGGCGGTACCC+AGG | 0.528564 | 5_3:-11585002 | Msa0798720:CDS |
| ACAAGGTACTTGGCGAGCCA+GGG | 0.543294 | 5_3:-11584873 | Msa0798720:intron |
| CTCTCTAATGCTGCATCTGG+CGG | 0.574327 | 5_3:-11585010 | Msa0798720:CDS |
| CAGCAACAATTGTTGAATCA+GGG | 0.581439 | 5_3:+11584817 | None:intergenic |
| CAACAGTGAAATTTATGAGA+AGG | 0.597194 | 5_3:-11584653 | Msa0798720:CDS |
| CTGCCTCCATAGTTAAAACC+AGG | 0.599308 | 5_3:+11584553 | None:intergenic |
| ACAGAGGCTTAATGCAACCC+TGG | 0.616878 | 5_3:+11584856 | None:intergenic |
| GAAGTCGAGACACTACCTCC+AGG | 0.636732 | 5_3:-11584589 | Msa0798720:CDS |
| TGAAATTGAATCTGTCCGGA+AGG | 0.640829 | 5_3:+11584527 | None:intergenic |
| GAGACACTACCTCCAGGCAA+TGG | 0.644889 | 5_3:-11584583 | Msa0798720:CDS |
| TCAGACGATAGATAATAACA+AGG | 0.697485 | 5_3:-11584710 | Msa0798720:intron |
| CAGACGATAGATAATAACAA+GGG | 0.718539 | 5_3:-11584709 | Msa0798720:CDS |
| GGTTGAGAACCATTGCCTGG+AGG | 0.737525 | 5_3:+11584574 | None:intergenic |
| CAAACAAGTAAATCACACAG+AGG | 0.794778 | 5_3:+11584840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTCTCAAGACATAT+TGG | - | chr5_3:11584957-11584976 | Msa0798720:intron | 20.0% |
| ! | CTTGTAATAACAACAACATT+TGG | + | chr5_3:11584696-11584715 | None:intergenic | 25.0% |
| !! | CAAATGTTGTTGTTATTACA+AGG | - | chr5_3:11584694-11584713 | Msa0798720:CDS | 25.0% |
| ! | TGTTGTTATTACAAGGTACT+TGG | - | chr5_3:11584701-11584720 | Msa0798720:CDS | 30.0% |
| TGGAGAAGTGGATAAAAATT+CGG | - | chr5_3:11584824-11584843 | Msa0798720:CDS | 30.0% | |
| TCAGACGATAGATAATAACA+AGG | - | chr5_3:11584874-11584893 | Msa0798720:intron | 30.0% | |
| CAGACGATAGATAATAACAA+GGG | - | chr5_3:11584875-11584894 | Msa0798720:intron | 30.0% | |
| GATAGATAATAACAAGGGTT+TGG | - | chr5_3:11584880-11584899 | Msa0798720:intron | 30.0% | |
| CAACAGTGAAATTTATGAGA+AGG | - | chr5_3:11584931-11584950 | Msa0798720:intron | 30.0% | |
| TATTCTCAAGACATATTGGT+TGG | - | chr5_3:11584961-11584980 | Msa0798720:intron | 30.0% | |
| ATTTGAAGAAGATTGACCAG+AGG | + | chr5_3:11584520-11584539 | None:intergenic | 35.0% | |
| GTTGACATTCAAAAAGAAGC+TGG | - | chr5_3:11584544-11584563 | Msa0798720:CDS | 35.0% | |
| ACATTCAAAAAGAAGCTGGA+TGG | - | chr5_3:11584548-11584567 | Msa0798720:CDS | 35.0% | |
| CATTCAAAAAGAAGCTGGAT+GGG | - | chr5_3:11584549-11584568 | Msa0798720:CDS | 35.0% | |
| CAAACAAGTAAATCACACAG+AGG | + | chr5_3:11584747-11584766 | None:intergenic | 35.0% | |
| CAGCAACAATTGTTGAATCA+GGG | + | chr5_3:11584770-11584789 | None:intergenic | 35.0% | |
| ACAGCAACAATTGTTGAATC+AGG | + | chr5_3:11584771-11584790 | None:intergenic | 35.0% | |
| ATTGTTGCTGTCTGTTTAGA+AGG | - | chr5_3:11584780-11584799 | Msa0798720:CDS | 35.0% | |
| ! | AGGTCTTGAGAATTTTCTGA+AGG | - | chr5_3:11584800-11584819 | Msa0798720:CDS | 35.0% |
| !! | CTTGAGAATTTTCTGAAGGT+TGG | - | chr5_3:11584804-11584823 | Msa0798720:CDS | 35.0% |
| GGATAAAAATTCGGTAACAC+CGG | - | chr5_3:11584833-11584852 | Msa0798720:CDS | 35.0% | |
| !!! | TCTCAACCTGGTTTTAACTA+TGG | - | chr5_3:11585025-11585044 | Msa0798720:CDS | 35.0% |
| !! | TTTTCTGAAGGTTGGAGAAG+TGG | - | chr5_3:11584812-11584831 | Msa0798720:CDS | 40.0% |
| ! | AGCATACAAGTTGACATCTC+CGG | + | chr5_3:11584855-11584874 | None:intergenic | 40.0% |
| !!! | CAACCTGGTTTTAACTATGG+AGG | - | chr5_3:11585028-11585047 | Msa0798720:CDS | 40.0% |
| TGAAATTGAATCTGTCCGGA+AGG | + | chr5_3:11585060-11585079 | None:intergenic | 40.0% | |
| CTGCTGAAATTGAATCTGTC+CGG | + | chr5_3:11585064-11585083 | None:intergenic | 40.0% | |
| !! | CACGTACTTGATTTGTGCCT+GGG | + | chr5_3:11584602-11584621 | None:intergenic | 45.0% |
| !! | TCACGTACTTGATTTGTGCC+TGG | + | chr5_3:11584603-11584622 | None:intergenic | 45.0% |
| CTGCCTCCATAGTTAAAACC+AGG | + | chr5_3:11585034-11585053 | None:intergenic | 45.0% | |
| GCTCTCTCTAATGCTGCATC+TGG | - | chr5_3:11584571-11584590 | Msa0798720:CDS | 50.0% | |
| CTCTCTAATGCTGCATCTGG+CGG | - | chr5_3:11584574-11584593 | Msa0798720:CDS | 50.0% | |
| TTTCTTGCCCTGCTTCATGC+TGG | - | chr5_3:11584642-11584661 | Msa0798720:CDS | 50.0% | |
| AATGTCGCCAGCATGAAGCA+GGG | + | chr5_3:11584652-11584671 | None:intergenic | 50.0% | |
| ACAGAGGCTTAATGCAACCC+TGG | + | chr5_3:11584731-11584750 | None:intergenic | 50.0% | |
| CAATGTCGCCAGCATGAAGC+AGG | + | chr5_3:11584653-11584672 | None:intergenic | 55.0% | |
| ! | TACAAGGTACTTGGCGAGCC+AGG | - | chr5_3:11584710-11584729 | Msa0798720:intron | 55.0% |
| ! | ACAAGGTACTTGGCGAGCCA+GGG | - | chr5_3:11584711-11584730 | Msa0798720:intron | 55.0% |
| GAAGTCGAGACACTACCTCC+AGG | - | chr5_3:11584995-11585014 | Msa0798720:CDS | 55.0% | |
| GAGACACTACCTCCAGGCAA+TGG | - | chr5_3:11585001-11585020 | Msa0798720:CDS | 55.0% | |
| GGTTGAGAACCATTGCCTGG+AGG | + | chr5_3:11585013-11585032 | None:intergenic | 55.0% | |
| ! | CCAGGTTGAGAACCATTGCC+TGG | + | chr5_3:11585016-11585035 | None:intergenic | 55.0% |
| CCAGGCAATGGTTCTCAACC+TGG | - | chr5_3:11585013-11585032 | Msa0798720:CDS | 55.0% | |
| CTATGGAGGCAGTGACCTTC+CGG | - | chr5_3:11585042-11585061 | Msa0798720:CDS | 55.0% | |
| TGCTGCATCTGGCGGTACCC+AGG | - | chr5_3:11584582-11584601 | Msa0798720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11584516 | 11585090 | 11584516 | ID=Msa0798720;Name=Msa0798720 |
| chr5_3 | mRNA | 11584516 | 11585090 | 11584516 | ID=Msa0798720-mRNA-1;Parent=Msa0798720;Name=Msa0798720-mRNA-1;_AED=0.34;_eAED=0.34;_QI=22|0.5|0.33|1|0.5|0.66|3|0|139 |
| chr5_3 | exon | 11584516 | 11584728 | 11584516 | ID=Msa0798720-mRNA-1:exon:4776;Parent=Msa0798720-mRNA-1 |
| chr5_3 | exon | 11584761 | 11584890 | 11584761 | ID=Msa0798720-mRNA-1:exon:4775;Parent=Msa0798720-mRNA-1 |
| chr5_3 | exon | 11584992 | 11585090 | 11584992 | ID=Msa0798720-mRNA-1:exon:4774;Parent=Msa0798720-mRNA-1 |
| chr5_3 | five_prime_UTR | 11585069 | 11585090 | 11585069 | ID=Msa0798720-mRNA-1:five_prime_utr;Parent=Msa0798720-mRNA-1 |
| chr5_3 | CDS | 11584992 | 11585068 | 11584992 | ID=Msa0798720-mRNA-1:cds;Parent=Msa0798720-mRNA-1 |
| chr5_3 | CDS | 11584761 | 11584890 | 11584761 | ID=Msa0798720-mRNA-1:cds;Parent=Msa0798720-mRNA-1 |
| chr5_3 | CDS | 11584516 | 11584728 | 11584516 | ID=Msa0798720-mRNA-1:cds;Parent=Msa0798720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
