Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846300 | XP_003613911.1 | 95.149 | 268 | 10 | 2 | 1 | 268 | 1 | 265 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846300 | G7JWJ7 | 95.149 | 268 | 10 | 2 | 1 | 268 | 1 | 265 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0846300 | 0.819602 | 1.065546e-52 | -8.615850e-47 |
| Msa0025690 | Msa0846300 | 0.853025 | 3.137928e-61 | -8.615850e-47 |
| Msa0034100 | Msa0846300 | 0.803918 | 2.771924e-49 | -8.615850e-47 |
| Msa0041780 | Msa0846300 | 0.810308 | 1.229481e-50 | -8.615850e-47 |
| Msa0050320 | Msa0846300 | 0.809303 | 2.022522e-50 | -8.615850e-47 |
| Msa0091090 | Msa0846300 | 0.813011 | 3.176264e-51 | -8.615850e-47 |
| Msa0623360 | Msa0846300 | 0.808058 | 3.731565e-50 | -8.615850e-47 |
| Msa0630850 | Msa0846300 | 0.819372 | 1.202045e-52 | -8.615850e-47 |
| Msa0659020 | Msa0846300 | 0.839283 | 1.738130e-57 | -8.615850e-47 |
| Msa0681880 | Msa0846300 | 0.809367 | 1.959395e-50 | -8.615850e-47 |
| Msa0691740 | Msa0846300 | 0.800497 | 1.401874e-48 | -8.615850e-47 |
| Msa0775420 | Msa0846300 | 0.823311 | 1.483225e-53 | -8.615850e-47 |
| Msa0812800 | Msa0846300 | 0.827255 | 1.730974e-54 | -8.615850e-47 |
| Msa0834200 | Msa0846300 | 0.827010 | 1.981109e-54 | -8.615850e-47 |
| Msa0834240 | Msa0846300 | 0.837067 | 6.469438e-57 | -8.615850e-47 |
| Msa0838670 | Msa0846300 | 0.818730 | 1.682777e-52 | -8.615850e-47 |
| Msa0121480 | Msa0846300 | 0.808925 | 2.436899e-50 | -8.615850e-47 |
| Msa0154720 | Msa0846300 | 0.808284 | 3.340646e-50 | -8.615850e-47 |
| Msa0160650 | Msa0846300 | 0.830445 | 2.925081e-55 | -8.615850e-47 |
| Msa0183200 | Msa0846300 | 0.834807 | 2.420620e-56 | -8.615850e-47 |
| Msa0223190 | Msa0846300 | 0.803690 | 3.091176e-49 | -8.615850e-47 |
| Msa0378670 | Msa0846300 | 0.800836 | 1.195646e-48 | -8.615850e-47 |
| Msa0380590 | Msa0846300 | -0.842368 | 2.699332e-58 | -8.615850e-47 |
| Msa0385030 | Msa0846300 | -0.819057 | 1.418143e-52 | -8.615850e-47 |
| Msa0408160 | Msa0846300 | 0.805394 | 1.363792e-49 | -8.615850e-47 |
| Msa0428330 | Msa0846300 | 0.810777 | 9.738811e-51 | -8.615850e-47 |
| Msa0430130 | Msa0846300 | -0.861359 | 1.084470e-63 | -8.615850e-47 |
| Msa0436590 | Msa0846300 | 0.801872 | 7.336363e-49 | -8.615850e-47 |
| Msa0436600 | Msa0846300 | 0.821536 | 3.833030e-53 | -8.615850e-47 |
| Msa0436610 | Msa0846300 | 0.814221 | 1.720547e-51 | -8.615850e-47 |
| Msa0264240 | Msa0846300 | 0.802913 | 4.475886e-49 | -8.615850e-47 |
| Msa0264420 | Msa0846300 | 0.816719 | 4.784297e-52 | -8.615850e-47 |
| Msa0302310 | Msa0846300 | 0.824471 | 7.929609e-54 | -8.615850e-47 |
| Msa0339670 | Msa0846300 | 0.815914 | 7.241551e-52 | -8.615850e-47 |
| Msa0496470 | Msa0846300 | 0.817760 | 2.789484e-52 | -8.615850e-47 |
| Msa0500420 | Msa0846300 | -0.841654 | 4.169247e-58 | -8.615850e-47 |
| Msa0546370 | Msa0846300 | 0.819973 | 8.764797e-53 | -8.615850e-47 |
| Msa0555510 | Msa0846300 | 0.801431 | 9.031606e-49 | -8.615850e-47 |
| Msa0568290 | Msa0846300 | 0.826898 | 2.107206e-54 | -8.615850e-47 |
| Msa0846300 | Msa0853150 | 0.813895 | 2.030047e-51 | -8.615850e-47 |
| Msa0846300 | Msa0999590 | 0.806898 | 6.578752e-50 | -8.615850e-47 |
| Msa0846300 | Msa1031530 | 0.819714 | 1.004360e-52 | -8.615850e-47 |
| Msa0846300 | Msa1038110 | 0.836801 | 7.563459e-57 | -8.615850e-47 |
| Msa0846300 | Msa1101610 | 0.803443 | 3.477919e-49 | -8.615850e-47 |
| Msa0846300 | Msa1107330 | -0.823527 | 1.320017e-53 | -8.615850e-47 |
| Msa0846300 | Msa1129660 | 0.816034 | 6.809652e-52 | -8.615850e-47 |
| Msa0846300 | Msa1190560 | -0.819822 | 9.490746e-53 | -8.615850e-47 |
| Msa0846300 | Msa1199580 | 0.854144 | 1.497168e-61 | -8.615850e-47 |
| Msa0846300 | Msa1220580 | -0.811056 | 8.471659e-51 | -8.615850e-47 |
| Msa0846300 | Msa1263610 | 0.806235 | 9.079586e-50 | -8.615850e-47 |
| Msa0846300 | Msa1328630 | 0.851520 | 8.412692e-61 | -8.615850e-47 |
| Msa0846300 | Msa1328720 | 0.850584 | 1.544706e-60 | -8.615850e-47 |
| Msa0846300 | Msa1334560 | -0.809095 | 2.240979e-50 | -8.615850e-47 |
| Msa0846300 | Msa1379940 | -0.807769 | 4.299490e-50 | -8.615850e-47 |
| Msa0846300 | Msa1401000 | 0.807879 | 4.074713e-50 | -8.615850e-47 |
| Msa0846300 | Msa1427180 | 0.809464 | 1.867716e-50 | -8.615850e-47 |
| Msa0846300 | Msa1446220 | 0.800986 | 1.114267e-48 | -8.615850e-47 |
| Msa0846300 | Msa1450630 | 0.805309 | 1.420366e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846300 | MtrunA17_Chr5g0418031 | 95.149 | 268 | 10 | 2 | 1 | 268 | 1 | 265 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846300 | AT1G13990.1 | 59.862 | 289 | 79 | 5 | 1 | 266 | 1 | 275 | 1.17e-99 | 293 |
| Msa0846300 | AT1G13990.2 | 54.259 | 317 | 80 | 6 | 1 | 266 | 1 | 303 | 1.64e-92 | 275 |
| Msa0846300 | AT1G13990.3 | 49.062 | 320 | 95 | 9 | 1 | 266 | 1 | 306 | 5.36e-70 | 218 |
Find 99 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGTTTGGAAATGGAAAT+TGG | 0.174634 | 5_4:-26201744 | None:intergenic |
| TTTGTTCCCTTTGGCTGTTT+TGG | 0.287692 | 5_4:-26206379 | None:intergenic |
| AAGAGAAGTTAGTTTGGAAA+TGG | 0.319072 | 5_4:-26201751 | None:intergenic |
| AAGAACTCATCCGAGTTTCC+AGG | 0.333604 | 5_4:-26202044 | None:intergenic |
| TGGAAGAAGAGAAGTTAGTT+TGG | 0.348657 | 5_4:-26201757 | None:intergenic |
| GAGCTCGAAGATTAAGCTTA+AGG | 0.349622 | 5_4:-26206260 | None:intergenic |
| GTGGCGACGGAAAGGGTTGG+TGG | 0.357740 | 5_4:-26201838 | None:intergenic |
| CCTTTCTCCTCCTCCTTGTT+CGG | 0.360594 | 5_4:-26201923 | None:intergenic |
| ATTTGAAGTGTCCTATAGAT+AGG | 0.360675 | 5_4:+26206526 | Msa0846300:three_prime_UTR |
| CTATAGATAGGGCGAGTTAT+AGG | 0.361731 | 5_4:+26206538 | Msa0846300:three_prime_UTR |
| GTCGTCGGCGGCGGCGGCAG+AGG | 0.365376 | 5_4:+26201960 | Msa0846300:CDS |
| TGCAACGTCGTCGGCGGCGG+CGG | 0.376584 | 5_4:+26201954 | Msa0846300:CDS |
| AATCACACCTTATATTTCTC+CGG | 0.387380 | 5_4:-26204634 | None:intergenic |
| TTAGTTTGGAAATGGAAATT+GGG | 0.394216 | 5_4:-26201743 | None:intergenic |
| TGAAAACCCGGAGAAATATA+AGG | 0.401206 | 5_4:+26204627 | Msa0846300:CDS |
| AGAGAGAGAGGCGGCGGGTG+TGG | 0.404308 | 5_4:-26201857 | None:intergenic |
| CTATAACTCGCCCTATCTAT+AGG | 0.421329 | 5_4:-26206537 | None:intergenic |
| TGAGGTGTAGAGATGAGTCT+AGG | 0.424495 | 5_4:-26201897 | None:intergenic |
| TCAGATCATCTTGATCTTCA+AGG | 0.424973 | 5_4:-26206293 | None:intergenic |
| CTAATATCTTCTACTTGCAT+TGG | 0.426258 | 5_4:-26204827 | None:intergenic |
| CGACGGAAAGGGTTGGTGGG+AGG | 0.428198 | 5_4:-26201834 | None:intergenic |
| TTGATCTTTGCAAGAAAATG+AGG | 0.433526 | 5_4:+26206187 | Msa0846300:CDS |
| CGGCGGGTGTGGCGACGGAA+AGG | 0.455266 | 5_4:-26201846 | None:intergenic |
| GAGGTGTAGAGATGAGTCTA+GGG | 0.456501 | 5_4:-26201896 | None:intergenic |
| TACCGATGAGGCGTCTATCT+CGG | 0.460916 | 5_4:-26206076 | None:intergenic |
| TCGTGCAACGTCGTCGGCGG+CGG | 0.462296 | 5_4:+26201951 | Msa0846300:CDS |
| GGCTTTGAAGTTTCTCTCCA+AGG | 0.462303 | 5_4:-26204563 | None:intergenic |
| TTAATCTTCGAGCTCGAAAA+CGG | 0.465903 | 5_4:+26206268 | Msa0846300:CDS |
| GACGGAAAGGGTTGGTGGGA+GGG | 0.471223 | 5_4:-26201833 | None:intergenic |
| GGCGGGTGTGGCGACGGAAA+GGG | 0.478572 | 5_4:-26201845 | None:intergenic |
| TTTGATTCTAGCAGCTATGA+TGG | 0.481586 | 5_4:+26202119 | Msa0846300:CDS |
| GGAGAAGAGAGAGAGGCGGC+GGG | 0.484370 | 5_4:-26201862 | None:intergenic |
| CAAGTAGAAGATATTAGAGA+TGG | 0.493706 | 5_4:+26204833 | Msa0846300:CDS |
| GGGAGAAGAGAGAGAGGCGG+CGG | 0.493916 | 5_4:-26201863 | None:intergenic |
| AGAGGCGGCGGGTGTGGCGA+CGG | 0.499779 | 5_4:-26201851 | None:intergenic |
| CAGTGGAAACGAGGAGGAGG+TGG | 0.500190 | 5_4:+26201992 | Msa0846300:CDS |
| ATCACTTCTTTCCCATCAGA+AGG | 0.507476 | 5_4:-26206331 | None:intergenic |
| GAAATTCAACTCCCTTCTGA+TGG | 0.511169 | 5_4:+26206319 | Msa0846300:exon |
| GTCGGCGGCGGCGGCAGAGG+AGG | 0.511472 | 5_4:+26201963 | Msa0846300:CDS |
| AGCGAAGTTGAAAGAGAGCT+TGG | 0.516832 | 5_4:+26204725 | Msa0846300:intron |
| GCTTTGAAGTTTCTCTCCAA+GGG | 0.519722 | 5_4:-26204562 | None:intergenic |
| AAATCAGTCTAAACAAGCAA+GGG | 0.520422 | 5_4:+26204790 | Msa0846300:CDS |
| GTTGGTGGGAGGGAGAGCGA+TGG | 0.522907 | 5_4:-26201823 | None:intergenic |
| AGATATTAGAGATGGAGTGC+TGG | 0.526832 | 5_4:+26204841 | Msa0846300:CDS |
| CTCCTCCTTGTTCGGAAGTG+AGG | 0.531784 | 5_4:-26201915 | None:intergenic |
| CCGAACAAGGAGGAGGAGAA+AGG | 0.536819 | 5_4:+26201923 | Msa0846300:CDS |
| ATCACACCTTATATTTCTCC+GGG | 0.540391 | 5_4:-26204633 | None:intergenic |
| TGTGTATGTACTCACCCAAA+AGG | 0.546154 | 5_4:+26204586 | Msa0846300:CDS |
| TGATCTTTGCAAGAAAATGA+GGG | 0.547590 | 5_4:+26206188 | Msa0846300:CDS |
| TTTGAAGTGTCCTATAGATA+GGG | 0.548497 | 5_4:+26206527 | Msa0846300:three_prime_UTR |
| GAAGTATCGTGCAACGTCGT+CGG | 0.549545 | 5_4:+26201945 | Msa0846300:CDS |
| TTGCAGTTCTATTCCGCAGA+GGG | 0.551682 | 5_4:+26206214 | Msa0846300:CDS |
| CTACACCTCACTTCCGAACA+AGG | 0.552595 | 5_4:+26201910 | Msa0846300:CDS |
| GATGGCGGGAGAAGAGAGAG+AGG | 0.554072 | 5_4:-26201869 | None:intergenic |
| ATCATAGCTGCTAGAATCAA+AGG | 0.555592 | 5_4:-26202117 | None:intergenic |
| GTGGGAGGGAGAGCGATGGA+AGG | 0.556169 | 5_4:-26201819 | None:intergenic |
| TGACAGTGGAAACGAGGAGG+AGG | 0.559489 | 5_4:+26201989 | Msa0846300:CDS |
| AAAATCAGTCTAAACAAGCA+AGG | 0.561023 | 5_4:+26204789 | Msa0846300:CDS |
| GAGAAAGCGCTTCACATGGA+TGG | 0.561227 | 5_4:+26202014 | Msa0846300:CDS |
| CAGATCATCTTGATCTTCAA+GGG | 0.562330 | 5_4:-26206292 | None:intergenic |
| GGTATTTGAAGATGAAAATG+AGG | 0.563344 | 5_4:+26206008 | Msa0846300:intron |
| TCCACACTTCACATCAACCA+TGG | 0.563558 | 5_4:+26201776 | Msa0846300:exon |
| CGATGGAAGGTGAAACTGAA+GGG | 0.566266 | 5_4:-26201806 | None:intergenic |
| TGGCGACGGAAAGGGTTGGT+GGG | 0.569624 | 5_4:-26201837 | None:intergenic |
| TGCCGAGATAGACGCCTCAT+CGG | 0.575782 | 5_4:+26206074 | Msa0846300:CDS |
| AACTGAAGGGAGAGAATCCA+TGG | 0.580578 | 5_4:-26201793 | None:intergenic |
| AAATTCAACTCCCTTCTGAT+GGG | 0.581246 | 5_4:+26206320 | Msa0846300:exon |
| CCTACGCATGTCATAAGCAC+GGG | 0.588559 | 5_4:-26202081 | None:intergenic |
| CTTGCTGCAAGGAGGTTGTG+AGG | 0.590015 | 5_4:+26206047 | Msa0846300:CDS |
| AGTCTAAACAAGCAAGGGGA+GGG | 0.591602 | 5_4:+26204795 | Msa0846300:CDS |
| CTCACTTCCGAACAAGGAGG+AGG | 0.592127 | 5_4:+26201916 | Msa0846300:CDS |
| TTGCTGCAAGGAGGTTGTGA+GGG | 0.596232 | 5_4:+26206048 | Msa0846300:CDS |
| TTTGGTTATTTGTACCGATG+AGG | 0.600537 | 5_4:-26206088 | None:intergenic |
| TAACACCCAAAACAGCCAAA+GGG | 0.603277 | 5_4:+26206373 | Msa0846300:three_prime_UTR |
| CAGTCTAAACAAGCAAGGGG+AGG | 0.606675 | 5_4:+26204794 | Msa0846300:CDS |
| AGGAGATGACAGTGGAAACG+AGG | 0.607798 | 5_4:+26201983 | Msa0846300:CDS |
| TCCTACGCATGTCATAAGCA+CGG | 0.610489 | 5_4:-26202082 | None:intergenic |
| AATTGTGCACGATGAAAACC+CGG | 0.610498 | 5_4:+26204615 | Msa0846300:CDS |
| GGTGGAGAAAGCGCTTCACA+TGG | 0.611542 | 5_4:+26202010 | Msa0846300:CDS |
| GTATCGTGCAACGTCGTCGG+CGG | 0.612057 | 5_4:+26201948 | Msa0846300:CDS |
| CAGTTCTATTCCGCAGAGGG+AGG | 0.613903 | 5_4:+26206217 | Msa0846300:CDS |
| GTAACACCCAAAACAGCCAA+AGG | 0.614205 | 5_4:+26206372 | Msa0846300:three_prime_UTR |
| GGTGTGGCGACGGAAAGGGT+TGG | 0.615753 | 5_4:-26201841 | None:intergenic |
| GGCGGGAGAAGAGAGAGAGG+CGG | 0.617937 | 5_4:-26201866 | None:intergenic |
| AAGTATTGTGACTTGCTGCA+AGG | 0.620712 | 5_4:+26206036 | Msa0846300:CDS |
| TCACTTCTTTCCCATCAGAA+GGG | 0.624890 | 5_4:-26206330 | None:intergenic |
| TCCATGGTTGATGTGAAGTG+TGG | 0.626748 | 5_4:-26201777 | None:intergenic |
| CTTGCAGTTCTATTCCGCAG+AGG | 0.639139 | 5_4:+26206213 | Msa0846300:CDS |
| GCGATGGAAGGTGAAACTGA+AGG | 0.640575 | 5_4:-26201807 | None:intergenic |
| CCCGTGCTTATGACATGCGT+AGG | 0.656656 | 5_4:+26202081 | Msa0846300:CDS |
| AGATGACAGTGGAAACGAGG+AGG | 0.659545 | 5_4:+26201986 | Msa0846300:CDS |
| ACGCATGTCATAAGCACGGG+AGG | 0.660732 | 5_4:-26202078 | None:intergenic |
| CAGGAGGTGTCCTCCCTCTG+CGG | 0.666929 | 5_4:-26206227 | None:intergenic |
| AATCAGTCTAAACAAGCAAG+GGG | 0.668776 | 5_4:+26204791 | Msa0846300:CDS |
| AGGTGTAGAGATGAGTCTAG+GGG | 0.677549 | 5_4:-26201895 | None:intergenic |
| GGTGTAGAGATGAGTCTAGG+GGG | 0.709709 | 5_4:-26201894 | None:intergenic |
| CACCTCACTTCCGAACAAGG+AGG | 0.734423 | 5_4:+26201913 | Msa0846300:CDS |
| GGCAGAGGAGGAGATGACAG+TGG | 0.737489 | 5_4:+26201975 | Msa0846300:CDS |
| TATTGTGACTTGCTGCAAGG+AGG | 0.750982 | 5_4:+26206039 | Msa0846300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATAAATATAAATTT+AGG | - | chr5_4:26202642-26202661 | None:intergenic | 0.0% |
| !!! | AATTTAATTTTTTGTTTTCA+TGG | + | chr5_4:26202183-26202202 | Msa0846300:intron | 10.0% |
| !!! | TTAAGCTATTTTTATAAAAA+AGG | - | chr5_4:26202445-26202464 | None:intergenic | 10.0% |
| !! | ATTATATTATGTTTAGATAT+TGG | + | chr5_4:26204298-26204317 | Msa0846300:intron | 10.0% |
| !!! | ATAAATTTAGGATGAAATTT+AGG | - | chr5_4:26202630-26202649 | None:intergenic | 15.0% |
| !! | AAAATAATAATGAAAGGAAT+TGG | + | chr5_4:26202779-26202798 | Msa0846300:intron | 15.0% |
| !! | ATATCGTTTATGAATAAATT+CGG | + | chr5_4:26203248-26203267 | Msa0846300:intron | 15.0% |
| !!! | TGTTTTTTTCTATCAATATT+TGG | + | chr5_4:26204668-26204687 | Msa0846300:intron | 15.0% |
| !!! | ATTTAAAGTCAAATTGCTTA+TGG | + | chr5_4:26202235-26202254 | Msa0846300:intron | 20.0% |
| !! | TATTTGGATTGAATTATTTG+AGG | + | chr5_4:26202266-26202285 | Msa0846300:intron | 20.0% |
| !! | AATAAGCTGAAATCTATTAA+TGG | - | chr5_4:26202350-26202369 | None:intergenic | 20.0% |
| !!! | CTTATTTACATAAGTTTTCT+AGG | + | chr5_4:26202364-26202383 | Msa0846300:intron | 20.0% |
| !! | AGAGTGAAAATAATAATGAA+AGG | + | chr5_4:26202773-26202792 | Msa0846300:intron | 20.0% |
| !! | GAATTTATTCATAAACGATA+TGG | - | chr5_4:26203249-26203268 | None:intergenic | 20.0% |
| !!! | GATTGTATTCTGTTTTATTT+TGG | + | chr5_4:26203812-26203831 | Msa0846300:intron | 20.0% |
| !! | AGCAATAAATTAAACTAAGA+TGG | - | chr5_4:26203895-26203914 | None:intergenic | 20.0% |
| !!! | TATTATTTACCTGTTGATTT+AGG | + | chr5_4:26204146-26204165 | Msa0846300:intron | 20.0% |
| !!! | ATTATTTACCTGTTGATTTA+GGG | + | chr5_4:26204147-26204166 | Msa0846300:intron | 20.0% |
| !!! | TTGTTACTTGTAATAATTGA+AGG | + | chr5_4:26204448-26204467 | Msa0846300:intron | 20.0% |
| !! | AAAAACAATAAACTGACAAA+AGG | - | chr5_4:26204478-26204497 | None:intergenic | 20.0% |
| !! | GATAGAAAAAAACAGAAAAA+AGG | - | chr5_4:26204662-26204681 | None:intergenic | 20.0% |
| !! | ACAAAATTATCAATAAACGT+TGG | + | chr5_4:26204894-26204913 | Msa0846300:intron | 20.0% |
| !! | ATTTCACATTACAAAATGTT+TGG | - | chr5_4:26204934-26204953 | None:intergenic | 20.0% |
| !!! | AATATATCAGAAAGTATCAA+AGG | + | chr5_4:26204951-26204970 | Msa0846300:intron | 20.0% |
| !! | TTAGTTTGGAAATGGAAATT+GGG | - | chr5_4:26201746-26201765 | None:intergenic | 25.0% |
| ! | GATCTTCATGATTTAGATTA+AGG | + | chr5_4:26202207-26202226 | Msa0846300:intron | 25.0% |
| ! | AGGATAAAATTGAATCAAAC+TGG | - | chr5_4:26202425-26202444 | None:intergenic | 25.0% |
| !! | AAATTTAGGTTAAGTTGCTT+GGG | - | chr5_4:26202616-26202635 | None:intergenic | 25.0% |
| ! | AGTAACTATGTACTACAAAT+AGG | - | chr5_4:26202873-26202892 | None:intergenic | 25.0% |
| ! | ATATCCTTGGTTTACAAAAA+AGG | + | chr5_4:26203017-26203036 | Msa0846300:intron | 25.0% |
| ! | TTTGGAGATTATTGTTAGAA+AGG | - | chr5_4:26203091-26203110 | None:intergenic | 25.0% |
| ! | TTGTAAAACTGAGTTAATTG+AGG | + | chr5_4:26203160-26203179 | Msa0846300:intron | 25.0% |
| ! | ATGTTTCAAAATTCAAACTC+AGG | + | chr5_4:26203204-26203223 | Msa0846300:intron | 25.0% |
| !! | TTTAAAATTACCAAGTAGTG+AGG | - | chr5_4:26203695-26203714 | None:intergenic | 25.0% |
| ! | CATAATAAGATCAAATTCGA+TGG | - | chr5_4:26203739-26203758 | None:intergenic | 25.0% |
| !!! | TATTCTGTTTTATTTTGGCT+GGG | + | chr5_4:26203817-26203836 | Msa0846300:intron | 25.0% |
| ! | ATGATAACAACCAAGTAATA+TGG | - | chr5_4:26204117-26204136 | None:intergenic | 25.0% |
| !! | CTATCAATATTTGGAATCTT+CGG | + | chr5_4:26204677-26204696 | Msa0846300:intron | 25.0% |
| ! | ATTATGTTCAAACACAATAG+AGG | - | chr5_4:26204990-26205009 | None:intergenic | 25.0% |
| ! | CTATTGTGTTTGAACATAAT+TGG | + | chr5_4:26204990-26205009 | Msa0846300:intron | 25.0% |
| ! | TAATTGGAATTTGATTGCTT+TGG | + | chr5_4:26205006-26205025 | Msa0846300:intron | 25.0% |
| ! | TATACTAAGGAAAACTAATC+GGG | - | chr5_4:26205065-26205084 | None:intergenic | 25.0% |
| ! | GTATACTAAGGAAAACTAAT+CGG | - | chr5_4:26205066-26205085 | None:intergenic | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | + | chr5_4:26205221-26205240 | Msa0846300:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr5_4:26205571-26205590 | Msa0846300:intron | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr5_4:26205714-26205733 | Msa0846300:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr5_4:26205754-26205773 | None:intergenic | 25.0% |
| ! | ATTTAACAATTTGACAACGT+TGG | + | chr5_4:26205981-26206000 | Msa0846300:intron | 25.0% |
| !! | AAGATTAAGCTTAAGGTTTT+CGG | - | chr5_4:26206256-26206275 | None:intergenic | 25.0% |
| ! | GTTAGTTTGGAAATGGAAAT+TGG | - | chr5_4:26201747-26201766 | None:intergenic | 30.0% |
| ! | AAGAGAAGTTAGTTTGGAAA+TGG | - | chr5_4:26201754-26201773 | None:intergenic | 30.0% |
| AAGTCAAATTGCTTATGGTA+AGG | + | chr5_4:26202240-26202259 | Msa0846300:intron | 30.0% | |
| AGTCAAATTGCTTATGGTAA+GGG | + | chr5_4:26202241-26202260 | Msa0846300:intron | 30.0% | |
| ! | ACTATTTGCAACTGTTTTCA+GGG | - | chr5_4:26202542-26202561 | None:intergenic | 30.0% |
| ! | AACTATTTGCAACTGTTTTC+AGG | - | chr5_4:26202543-26202562 | None:intergenic | 30.0% |
| TGAAAACAGTTGCAAATAGT+TGG | + | chr5_4:26202542-26202561 | Msa0846300:intron | 30.0% | |
| ! | GAAATTTAGGTTAAGTTGCT+TGG | - | chr5_4:26202617-26202636 | None:intergenic | 30.0% |
| ACCATCATACTCATTATTGT+TGG | + | chr5_4:26202682-26202701 | Msa0846300:intron | 30.0% | |
| ACCAACAATAATGAGTATGA+TGG | - | chr5_4:26202686-26202705 | None:intergenic | 30.0% | |
| ! | ATAGGATTTTTCGTTGTAGA+GGG | - | chr5_4:26202855-26202874 | None:intergenic | 30.0% |
| ! | AATAGGATTTTTCGTTGTAG+AGG | - | chr5_4:26202856-26202875 | None:intergenic | 30.0% |
| GGATAAGAAAACTACTTCAA+TGG | + | chr5_4:26202907-26202926 | Msa0846300:intron | 30.0% | |
| CAACTTCTATCAAAAGACAT+CGG | + | chr5_4:26202939-26202958 | Msa0846300:intron | 30.0% | |
| !!! | TACTCCTTTTTTGTAAACCA+AGG | - | chr5_4:26203024-26203043 | None:intergenic | 30.0% |
| TTACAAAAAAGGAGTAGAAC+AGG | + | chr5_4:26203028-26203047 | Msa0846300:intron | 30.0% | |
| TTGAGCGAGTCTAAATATAT+TGG | + | chr5_4:26203295-26203314 | Msa0846300:intron | 30.0% | |
| !!! | CTGTCATTTTATACATGTCT+AGG | - | chr5_4:26203329-26203348 | None:intergenic | 30.0% |
| AGACATGTATAAAATGACAG+CGG | + | chr5_4:26203329-26203348 | Msa0846300:intron | 30.0% | |
| TATGCAAATGTATGCAAATG+TGG | - | chr5_4:26203448-26203467 | None:intergenic | 30.0% | |
| TAACTCTCAAATCACATGAT+AGG | - | chr5_4:26203788-26203807 | None:intergenic | 30.0% | |
| !!! | GTATTCTGTTTTATTTTGGC+TGG | + | chr5_4:26203816-26203835 | Msa0846300:intron | 30.0% |
| GAGTATCTTAGTTTATCTCT+AGG | + | chr5_4:26204039-26204058 | Msa0846300:intron | 30.0% | |
| GTAATATGGCAACTAATTCT+AGG | - | chr5_4:26204103-26204122 | None:intergenic | 30.0% | |
| GAATTAGTTGCCATATTACT+TGG | + | chr5_4:26204104-26204123 | Msa0846300:intron | 30.0% | |
| AACACTAGACCTTAATTACA+GGG | - | chr5_4:26204188-26204207 | None:intergenic | 30.0% | |
| AAACACTAGACCTTAATTAC+AGG | - | chr5_4:26204189-26204208 | None:intergenic | 30.0% | |
| ATAATACTGTTGAAGTTGTG+AGG | - | chr5_4:26204283-26204302 | None:intergenic | 30.0% | |
| ! | TGTCATCTAAAACTGATGAA+AGG | - | chr5_4:26204541-26204560 | None:intergenic | 30.0% |
| AATCACACCTTATATTTCTC+CGG | - | chr5_4:26204637-26204656 | None:intergenic | 30.0% | |
| !! | TGCTTCCTTTTGAAAACAAT+AGG | - | chr5_4:26204751-26204770 | None:intergenic | 30.0% |
| AAAATCAGTCTAAACAAGCA+AGG | + | chr5_4:26204789-26204808 | Msa0846300:CDS | 30.0% | |
| AAATCAGTCTAAACAAGCAA+GGG | + | chr5_4:26204790-26204809 | Msa0846300:CDS | 30.0% | |
| CTAATATCTTCTACTTGCAT+TGG | - | chr5_4:26204830-26204849 | None:intergenic | 30.0% | |
| CAAGTAGAAGATATTAGAGA+TGG | + | chr5_4:26204833-26204852 | Msa0846300:CDS | 30.0% | |
| ATACTAAGGAAAACTAATCG+GGG | - | chr5_4:26205064-26205083 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCTTAGTATACC+CGG | + | chr5_4:26205067-26205086 | Msa0846300:intron | 30.0% |
| ATATTTAAACCGTGTAACCT+GGG | - | chr5_4:26205218-26205237 | None:intergenic | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | + | chr5_4:26205220-26205239 | Msa0846300:intron | 30.0% | |
| TAAATCATCGTATTCAAGCT+GGG | + | chr5_4:26205281-26205300 | Msa0846300:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr5_4:26205567-26205586 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr5_4:26205638-26205657 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr5_4:26205639-26205658 | Msa0846300:intron | 30.0% | |
| ! | TTTTCTAATGGTTTCTCGAA+TGG | - | chr5_4:26205707-26205726 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr5_4:26205719-26205738 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr5_4:26205758-26205777 | Msa0846300:intron | 30.0% |
| AACTTACAGTTTACAGTAGT+AGG | - | chr5_4:26205854-26205873 | None:intergenic | 30.0% | |
| ! | GTAAACTGTAAGTTTGTTCA+TGG | + | chr5_4:26205860-26205879 | Msa0846300:intron | 30.0% |
| ! | GTTTCATTTTACCAAGTTGT+GGG | - | chr5_4:26205896-26205915 | None:intergenic | 30.0% |
| ! | TGTTTCATTTTACCAAGTTG+TGG | - | chr5_4:26205897-26205916 | None:intergenic | 30.0% |
| GGTATTTGAAGATGAAAATG+AGG | + | chr5_4:26206008-26206027 | Msa0846300:intron | 30.0% | |
| GGAGGCAAATTATAATAGTT+TGG | - | chr5_4:26206109-26206128 | None:intergenic | 30.0% | |
| ! | TGTTTTCAAACAACAGAGAT+TGG | - | chr5_4:26206130-26206149 | None:intergenic | 30.0% |
| TTGATCTTTGCAAGAAAATG+AGG | + | chr5_4:26206187-26206206 | Msa0846300:CDS | 30.0% | |
| TGATCTTTGCAAGAAAATGA+GGG | + | chr5_4:26206188-26206207 | Msa0846300:CDS | 30.0% | |
| ! | AGATTAAGCTTAAGGTTTTC+GGG | - | chr5_4:26206255-26206274 | None:intergenic | 30.0% |
| ! | ATTTGAAGTGTCCTATAGAT+AGG | + | chr5_4:26206526-26206545 | Msa0846300:three_prime_UTR | 30.0% |
| ! | TTTGAAGTGTCCTATAGATA+GGG | + | chr5_4:26206527-26206546 | Msa0846300:three_prime_UTR | 30.0% |
| TGGAAGAAGAGAAGTTAGTT+TGG | - | chr5_4:26201760-26201779 | None:intergenic | 35.0% | |
| TGGAAAAATTCCTGGAAACT+CGG | + | chr5_4:26202034-26202053 | Msa0846300:CDS | 35.0% | |
| ATCATAGCTGCTAGAATCAA+AGG | - | chr5_4:26202120-26202139 | None:intergenic | 35.0% | |
| TTTGATTCTAGCAGCTATGA+TGG | + | chr5_4:26202119-26202138 | Msa0846300:CDS | 35.0% | |
| ! | GCTTATGGTAAGGGTATATT+TGG | + | chr5_4:26202250-26202269 | Msa0846300:intron | 35.0% |
| CACTCTTGTACATCCAAATA+GGG | + | chr5_4:26202472-26202491 | Msa0846300:intron | 35.0% | |
| TCTAGTGAGAAATCCCTATT+TGG | - | chr5_4:26202488-26202507 | None:intergenic | 35.0% | |
| ! | CTATTTGCAACTGTTTTCAG+GGG | - | chr5_4:26202541-26202560 | None:intergenic | 35.0% |
| AAACAGTTGCAAATAGTTGG+TGG | + | chr5_4:26202545-26202564 | Msa0846300:intron | 35.0% | |
| TCTTAAACAAACGCACAAAC+AGG | - | chr5_4:26202714-26202733 | None:intergenic | 35.0% | |
| TTTGTGCGTTTGTTTAAGAG+TGG | + | chr5_4:26202715-26202734 | Msa0846300:intron | 35.0% | |
| ATCATCAACTTAGCTAAGCT+CGG | + | chr5_4:26202819-26202838 | Msa0846300:intron | 35.0% | |
| ! | TAGGATTTTTCGTTGTAGAG+GGG | - | chr5_4:26202854-26202873 | None:intergenic | 35.0% |
| TGTAGTACATAGTTACTGAG+CGG | + | chr5_4:26202876-26202895 | Msa0846300:intron | 35.0% | |
| GAAAACTACTTCAATGGAAG+AGG | + | chr5_4:26202913-26202932 | Msa0846300:intron | 35.0% | |
| CTCTAGACTAATGATATCCT+TGG | + | chr5_4:26203004-26203023 | Msa0846300:intron | 35.0% | |
| ! | CAAACAAAGCAGAGTTGTTT+TGG | - | chr5_4:26203109-26203128 | None:intergenic | 35.0% |
| GACATGTATAAAATGACAGC+GGG | + | chr5_4:26203330-26203349 | Msa0846300:intron | 35.0% | |
| CGTTTATGCATAGAGCTATT+GGG | - | chr5_4:26203518-26203537 | None:intergenic | 35.0% | |
| TCGTTTATGCATAGAGCTAT+TGG | - | chr5_4:26203519-26203538 | None:intergenic | 35.0% | |
| AAATTACCAAGTAGTGAGGA+TGG | - | chr5_4:26203691-26203710 | None:intergenic | 35.0% | |
| GGACAAATTGACAAATCACA+AGG | - | chr5_4:26203718-26203737 | None:intergenic | 35.0% | |
| TCTTGTATAGAGAGTGAGTT+GGG | + | chr5_4:26203844-26203863 | Msa0846300:intron | 35.0% | |
| !! | TTACCTGTTGATTTAGGGTA+AGG | + | chr5_4:26204152-26204171 | Msa0846300:intron | 35.0% |
| !! | TACCTGTTGATTTAGGGTAA+GGG | + | chr5_4:26204153-26204172 | Msa0846300:intron | 35.0% |
| GTCTTGTATCCCTGTAATTA+AGG | + | chr5_4:26204176-26204195 | Msa0846300:intron | 35.0% | |
| AATCATACGAGTCGAATCTA+TGG | + | chr5_4:26204366-26204385 | Msa0846300:intron | 35.0% | |
| ACATATACAGATCTCCATTG+AGG | - | chr5_4:26204402-26204421 | None:intergenic | 35.0% | |
| !!! | GCACAATTGGTTTTCCTTTT+GGG | - | chr5_4:26204603-26204622 | None:intergenic | 35.0% |
| !!! | TGCACAATTGGTTTTCCTTT+TGG | - | chr5_4:26204604-26204623 | None:intergenic | 35.0% |
| TGAAAACCCGGAGAAATATA+AGG | + | chr5_4:26204627-26204646 | Msa0846300:CDS | 35.0% | |
| ATCACACCTTATATTTCTCC+GGG | - | chr5_4:26204636-26204655 | None:intergenic | 35.0% | |
| ! | CTTGGCCTATTGTTTTCAAA+AGG | + | chr5_4:26204743-26204762 | Msa0846300:CDS | 35.0% |
| ! | TGTTTTCAAAAGGAAGCAAC+CGG | + | chr5_4:26204753-26204772 | Msa0846300:CDS | 35.0% |
| AATCAGTCTAAACAAGCAAG+GGG | + | chr5_4:26204791-26204810 | Msa0846300:CDS | 35.0% | |
| ! | TAGTTTTCCTTAGTATACCC+GGG | + | chr5_4:26205068-26205087 | Msa0846300:intron | 35.0% |
| TGGAATGTAACTTCAGCAAA+AGG | + | chr5_4:26205146-26205165 | Msa0846300:intron | 35.0% | |
| TATTTAAACCGTGTAACCTG+GGG | - | chr5_4:26205217-26205236 | None:intergenic | 35.0% | |
| GATATTTAAACCGTGTAACC+TGG | - | chr5_4:26205219-26205238 | None:intergenic | 35.0% | |
| !! | TTCTCCGTCATTTTGTACTA+TGG | - | chr5_4:26205248-26205267 | None:intergenic | 35.0% |
| ! | ACAAAATGACGGAGAAATAG+AGG | + | chr5_4:26205252-26205271 | Msa0846300:intron | 35.0% |
| GTAAATCATCGTATTCAAGC+TGG | + | chr5_4:26205280-26205299 | Msa0846300:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr5_4:26205346-26205365 | Msa0846300:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr5_4:26205355-26205374 | None:intergenic | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr5_4:26205560-26205579 | Msa0846300:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr5_4:26205580-26205599 | Msa0846300:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr5_4:26205585-26205604 | Msa0846300:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr5_4:26205642-26205661 | Msa0846300:intron | 35.0% | |
| ! | GTTTCTCGAATGGTTTTCTT+AGG | - | chr5_4:26205697-26205716 | None:intergenic | 35.0% |
| CAATAAACCGTGCAATATGT+TGG | - | chr5_4:26205933-26205952 | None:intergenic | 35.0% | |
| ! | TTTGGTTATTTGTACCGATG+AGG | - | chr5_4:26206091-26206110 | None:intergenic | 35.0% |
| TTTCAAACAACAGAGATTGG+AGG | - | chr5_4:26206127-26206146 | None:intergenic | 35.0% | |
| TTAATCTTCGAGCTCGAAAA+CGG | + | chr5_4:26206268-26206287 | Msa0846300:CDS | 35.0% | |
| CAGATCATCTTGATCTTCAA+GGG | - | chr5_4:26206295-26206314 | None:intergenic | 35.0% | |
| TCAGATCATCTTGATCTTCA+AGG | - | chr5_4:26206296-26206315 | None:intergenic | 35.0% | |
| AAATTCAACTCCCTTCTGAT+GGG | + | chr5_4:26206320-26206339 | Msa0846300:exon | 35.0% | |
| ! | ATACACGTTTTTGTTCCCTT+TGG | - | chr5_4:26206391-26206410 | None:intergenic | 35.0% |
| CACATGGATGGAAAAATTCC+TGG | + | chr5_4:26202026-26202045 | Msa0846300:CDS | 40.0% | |
| GCACTCTTGTACATCCAAAT+AGG | + | chr5_4:26202471-26202490 | Msa0846300:intron | 40.0% | |
| AAGCTAGTGAGATCCATTTG+AGG | - | chr5_4:26202967-26202986 | None:intergenic | 40.0% | |
| ! | TATCATTAGTCTAGAGCGAG+AGG | - | chr5_4:26203000-26203019 | None:intergenic | 40.0% |
| !!! | GTTTTTTCTCCTCTCTGTCA+TGG | + | chr5_4:26203137-26203156 | Msa0846300:intron | 40.0% |
| ! | GTTTTACAACCATGACAGAG+AGG | - | chr5_4:26203149-26203168 | None:intergenic | 40.0% |
| ! | AATCAAGTGTTGCAAAGGTG+AGG | - | chr5_4:26203425-26203444 | None:intergenic | 40.0% |
| ! | TGTGGAATCAAGTGTTGCAA+AGG | - | chr5_4:26203430-26203449 | None:intergenic | 40.0% |
| ATTAAAGATGCGCTCACGTT+GGG | - | chr5_4:26203477-26203496 | None:intergenic | 40.0% | |
| CACTACACACTTGCAACAAT+GGG | - | chr5_4:26203569-26203588 | None:intergenic | 40.0% | |
| TCACTACACACTTGCAACAA+TGG | - | chr5_4:26203570-26203589 | None:intergenic | 40.0% | |
| AAGTGTGTAGTGAACTGAAC+AGG | + | chr5_4:26203577-26203596 | Msa0846300:intron | 40.0% | |
| GTGAACTGAACAGGTTAATG+AGG | + | chr5_4:26203586-26203605 | Msa0846300:intron | 40.0% | |
| ACATGATAGGTTCTCAACTC+AGG | - | chr5_4:26203775-26203794 | None:intergenic | 40.0% | |
| GTCTTGTATAGAGAGTGAGT+TGG | + | chr5_4:26203843-26203862 | Msa0846300:intron | 40.0% | |
| !! | ACCTGTTGATTTAGGGTAAG+GGG | + | chr5_4:26204154-26204173 | Msa0846300:intron | 40.0% |
| ATGGAGATTTCACACCTCAA+TGG | + | chr5_4:26204385-26204404 | Msa0846300:intron | 40.0% | |
| !!! | CAGTTTTAGATGACAACCCT+TGG | + | chr5_4:26204546-26204565 | Msa0846300:intron | 40.0% |
| !! | GCTTTGAAGTTTCTCTCCAA+GGG | - | chr5_4:26204565-26204584 | None:intergenic | 40.0% |
| !! | TTTTGGGTGAGTACATACAC+AGG | - | chr5_4:26204587-26204606 | None:intergenic | 40.0% |
| TGTGTATGTACTCACCCAAA+AGG | + | chr5_4:26204586-26204605 | Msa0846300:CDS | 40.0% | |
| AATTGTGCACGATGAAAACC+CGG | + | chr5_4:26204615-26204634 | Msa0846300:CDS | 40.0% | |
| ! | GATTTTCTATTGCAGCTCTC+CGG | - | chr5_4:26204775-26204794 | None:intergenic | 40.0% |
| AGATATTAGAGATGGAGTGC+TGG | + | chr5_4:26204841-26204860 | Msa0846300:CDS | 40.0% | |
| TGCTTTGGTAAATGCTAAGC+AGG | + | chr5_4:26205021-26205040 | Msa0846300:intron | 40.0% | |
| TAGAAGCAAGACGGAGTATA+TGG | + | chr5_4:26205126-26205145 | Msa0846300:intron | 40.0% | |
| AACTTCAGCAAAAGGAGAAG+TGG | + | chr5_4:26205154-26205173 | Msa0846300:intron | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | + | chr5_4:26205155-26205174 | Msa0846300:intron | 40.0% | |
| ATATCATACCCCAGGTTACA+CGG | + | chr5_4:26205206-26205225 | Msa0846300:intron | 40.0% | |
| GGGTCCATAGTACAAAATGA+CGG | + | chr5_4:26205241-26205260 | Msa0846300:intron | 40.0% | |
| TGTTGTATGGTACGGAATGT+TGG | + | chr5_4:26205401-26205420 | Msa0846300:intron | 40.0% | |
| GTTGTATGGTACGGAATGTT+GGG | + | chr5_4:26205402-26205421 | Msa0846300:intron | 40.0% | |
| AACACGAGAGTAAAGTGTAG+CGG | + | chr5_4:26205437-26205456 | Msa0846300:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr5_4:26205484-26205503 | Msa0846300:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr5_4:26205629-26205648 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr5_4:26205667-26205686 | Msa0846300:intron | 40.0% | |
| AGATTTAGAGGTCACTGAGT+TGG | + | chr5_4:26205726-26205745 | Msa0846300:intron | 40.0% | |
| ! | CACTGAGTTGGATCCAAATA+TGG | + | chr5_4:26205738-26205757 | Msa0846300:intron | 40.0% |
| TTACCAAGTTGTGGGTACTA+GGG | - | chr5_4:26205888-26205907 | None:intergenic | 40.0% | |
| TTTACCAAGTTGTGGGTACT+AGG | - | chr5_4:26205889-26205908 | None:intergenic | 40.0% | |
| TCATCGACCAACATATTGCA+CGG | + | chr5_4:26205923-26205942 | Msa0846300:intron | 40.0% | |
| !! | AAGTATTGTGACTTGCTGCA+AGG | + | chr5_4:26206036-26206055 | Msa0846300:CDS | 40.0% |
| GAGCTCGAAGATTAAGCTTA+AGG | - | chr5_4:26206263-26206282 | None:intergenic | 40.0% | |
| GAAATTCAACTCCCTTCTGA+TGG | + | chr5_4:26206319-26206338 | Msa0846300:exon | 40.0% | |
| TCACTTCTTTCCCATCAGAA+GGG | - | chr5_4:26206333-26206352 | None:intergenic | 40.0% | |
| ATCACTTCTTTCCCATCAGA+AGG | - | chr5_4:26206334-26206353 | None:intergenic | 40.0% | |
| TAACACCCAAAACAGCCAAA+GGG | + | chr5_4:26206373-26206392 | Msa0846300:three_prime_UTR | 40.0% | |
| !! | TTGTTCCCTTTGGCTGTTTT+GGG | - | chr5_4:26206381-26206400 | None:intergenic | 40.0% |
| ! | TTTGTTCCCTTTGGCTGTTT+TGG | - | chr5_4:26206382-26206401 | None:intergenic | 40.0% |
| CTATAACTCGCCCTATCTAT+AGG | - | chr5_4:26206540-26206559 | None:intergenic | 40.0% | |
| CTATAGATAGGGCGAGTTAT+AGG | + | chr5_4:26206538-26206557 | Msa0846300:three_prime_UTR | 40.0% | |
| TCCACACTTCACATCAACCA+TGG | + | chr5_4:26201776-26201795 | Msa0846300:exon | 45.0% | |
| ! | TCCATGGTTGATGTGAAGTG+TGG | - | chr5_4:26201780-26201799 | None:intergenic | 45.0% |
| AACTGAAGGGAGAGAATCCA+TGG | - | chr5_4:26201796-26201815 | None:intergenic | 45.0% | |
| CGATGGAAGGTGAAACTGAA+GGG | - | chr5_4:26201809-26201828 | None:intergenic | 45.0% | |
| AGGTGTAGAGATGAGTCTAG+GGG | - | chr5_4:26201898-26201917 | None:intergenic | 45.0% | |
| GAGGTGTAGAGATGAGTCTA+GGG | - | chr5_4:26201899-26201918 | None:intergenic | 45.0% | |
| TGAGGTGTAGAGATGAGTCT+AGG | - | chr5_4:26201900-26201919 | None:intergenic | 45.0% | |
| AAGAACTCATCCGAGTTTCC+AGG | - | chr5_4:26202047-26202066 | None:intergenic | 45.0% | |
| TCCTACGCATGTCATAAGCA+CGG | - | chr5_4:26202085-26202104 | None:intergenic | 45.0% | |
| !! | AAAGACATCGGCTCCTCAAA+TGG | + | chr5_4:26202951-26202970 | Msa0846300:intron | 45.0% |
| GAACAGGCTGAAGCTAAAAG+TGG | + | chr5_4:26203044-26203063 | Msa0846300:intron | 45.0% | |
| ATTCGGCTAGACAGTTGAAC+AGG | + | chr5_4:26203265-26203284 | Msa0846300:intron | 45.0% | |
| ! | CCGTTCAGCTATTGCGTTTT+GGG | - | chr5_4:26203374-26203393 | None:intergenic | 45.0% |
| CCCAAAACGCAATAGCTGAA+CGG | + | chr5_4:26203371-26203390 | Msa0846300:intron | 45.0% | |
| ! | ACCGTTCAGCTATTGCGTTT+TGG | - | chr5_4:26203375-26203394 | None:intergenic | 45.0% |
| CATTAAAGATGCGCTCACGT+TGG | - | chr5_4:26203478-26203497 | None:intergenic | 45.0% | |
| ACGTGAGCGCATCTTTAATG+AGG | + | chr5_4:26203478-26203497 | Msa0846300:intron | 45.0% | |
| CCTTAGAGCTAGACTCAACT+CGG | - | chr5_4:26203651-26203670 | None:intergenic | 45.0% | |
| !! | AGTTGAGTCTAGCTCTAAGG+CGG | + | chr5_4:26203651-26203670 | Msa0846300:intron | 45.0% |
| TACCAAGTAGTGAGGATGGA+GGG | - | chr5_4:26203687-26203706 | None:intergenic | 45.0% | |
| TTACCAAGTAGTGAGGATGG+AGG | - | chr5_4:26203688-26203707 | None:intergenic | 45.0% | |
| ! | TATAGAGAGTGAGTTGGGTC+AGG | + | chr5_4:26203849-26203868 | Msa0846300:intron | 45.0% |
| ACCCCTTACCCTAAATCAAC+AGG | - | chr5_4:26204158-26204177 | None:intergenic | 45.0% | |
| !! | GGCTTTGAAGTTTCTCTCCA+AGG | - | chr5_4:26204566-26204585 | None:intergenic | 45.0% |
| ! | GGGTTTTCATCGTGCACAAT+TGG | - | chr5_4:26204616-26204635 | None:intergenic | 45.0% |
| AGCGAAGTTGAAAGAGAGCT+TGG | + | chr5_4:26204725-26204744 | Msa0846300:intron | 45.0% | |
| AGTCTAAACAAGCAAGGGGA+GGG | + | chr5_4:26204795-26204814 | Msa0846300:CDS | 45.0% | |
| ! | TTTTCCTTAGTATACCCGGG+AGG | + | chr5_4:26205071-26205090 | Msa0846300:intron | 45.0% |
| ! | AGGCAAGCCTTAGAAGCATA+TGG | + | chr5_4:26205091-26205110 | Msa0846300:intron | 45.0% |
| GCGGAAACCATATGCTTCTA+AGG | - | chr5_4:26205101-26205120 | None:intergenic | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | + | chr5_4:26205178-26205197 | Msa0846300:intron | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | - | chr5_4:26205185-26205204 | None:intergenic | 45.0% | |
| TGGAGATCATATCATACCCC+AGG | + | chr5_4:26205198-26205217 | Msa0846300:intron | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr5_4:26205284-26205303 | Msa0846300:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr5_4:26205293-26205312 | Msa0846300:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr5_4:26205307-26205326 | Msa0846300:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr5_4:26205326-26205345 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | + | chr5_4:26205393-26205412 | Msa0846300:intron | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | - | chr5_4:26205397-26205416 | None:intergenic | 45.0% | |
| GCTACACTTTACTCTCGTGT+TGG | - | chr5_4:26205438-26205457 | None:intergenic | 45.0% | |
| ! | AGTAAAGTGTAGCGGAGATG+AGG | + | chr5_4:26205445-26205464 | Msa0846300:intron | 45.0% |
| CTCTCTCTCTCTCTCTCTAA+TGG | - | chr5_4:26205523-26205542 | None:intergenic | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr5_4:26205628-26205647 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr5_4:26205651-26205670 | Msa0846300:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr5_4:26205661-26205680 | Msa0846300:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_4:26205807-26205826 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_4:26205808-26205827 | None:intergenic | 45.0% |
| CAATTTGACAACGTTGGTGC+AGG | + | chr5_4:26205987-26206006 | Msa0846300:intron | 45.0% | |
| !! | TATTGTGACTTGCTGCAAGG+AGG | + | chr5_4:26206039-26206058 | Msa0846300:CDS | 45.0% |
| TTGCAGTTCTATTCCGCAGA+GGG | + | chr5_4:26206214-26206233 | Msa0846300:CDS | 45.0% | |
| !!! | TTAAGGTTTTCGGGTACAGG+AGG | - | chr5_4:26206246-26206265 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGTTTTCGGGTAC+AGG | - | chr5_4:26206249-26206268 | None:intergenic | 45.0% |
| GTAACACCCAAAACAGCCAA+AGG | + | chr5_4:26206372-26206391 | Msa0846300:three_prime_UTR | 45.0% | |
| GCGATGGAAGGTGAAACTGA+AGG | - | chr5_4:26201810-26201829 | None:intergenic | 50.0% | |
| GGTGTAGAGATGAGTCTAGG+GGG | - | chr5_4:26201897-26201916 | None:intergenic | 50.0% | |
| CTACACCTCACTTCCGAACA+AGG | + | chr5_4:26201910-26201929 | Msa0846300:CDS | 50.0% | |
| CCTTTCTCCTCCTCCTTGTT+CGG | - | chr5_4:26201926-26201945 | None:intergenic | 50.0% | |
| !! | GAAGTATCGTGCAACGTCGT+CGG | + | chr5_4:26201945-26201964 | Msa0846300:CDS | 50.0% |
| AGGAGATGACAGTGGAAACG+AGG | + | chr5_4:26201983-26202002 | Msa0846300:CDS | 50.0% | |
| AGATGACAGTGGAAACGAGG+AGG | + | chr5_4:26201986-26202005 | Msa0846300:CDS | 50.0% | |
| !! | GAGAAAGCGCTTCACATGGA+TGG | + | chr5_4:26202014-26202033 | Msa0846300:CDS | 50.0% |
| CCTACGCATGTCATAAGCAC+GGG | - | chr5_4:26202084-26202103 | None:intergenic | 50.0% | |
| AGTTACTGAGCGGCATCAAG+AGG | + | chr5_4:26202886-26202905 | Msa0846300:intron | 50.0% | |
| ! | GGCTTTAGCTCATCTGAGCA+GGG | - | chr5_4:26203620-26203639 | None:intergenic | 50.0% |
| ! | AGGCTTTAGCTCATCTGAGC+AGG | - | chr5_4:26203621-26203640 | None:intergenic | 50.0% |
| AGACTCAACTCGGTAGAGCT+AGG | - | chr5_4:26203641-26203660 | None:intergenic | 50.0% | |
| !! | CCGAGTTGAGTCTAGCTCTA+AGG | + | chr5_4:26203648-26203667 | Msa0846300:intron | 50.0% |
| !! | GTTGAGTCTAGCTCTAAGGC+GGG | + | chr5_4:26203652-26203671 | Msa0846300:intron | 50.0% |
| !! | TTGAGTCTAGCTCTAAGGCG+GGG | + | chr5_4:26203653-26203672 | Msa0846300:intron | 50.0% |
| CAGTCTAAACAAGCAAGGGG+AGG | + | chr5_4:26204794-26204813 | Msa0846300:CDS | 50.0% | |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr5_4:26205123-26205142 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | + | chr5_4:26205165-26205184 | Msa0846300:intron | 50.0% | |
| CTATCAGACAGCAGTCAGAC+CGG | + | chr5_4:26205375-26205394 | Msa0846300:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | + | chr5_4:26205388-26205407 | Msa0846300:intron | 50.0% | |
| GTATGGTACGGAATGTTGGG+CGG | + | chr5_4:26205405-26205424 | Msa0846300:intron | 50.0% | |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr5_4:26205465-26205484 | Msa0846300:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+TGG | + | chr5_4:26205525-26205544 | Msa0846300:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+GGG | + | chr5_4:26205534-26205553 | Msa0846300:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGTG+GGG | + | chr5_4:26205535-26205554 | Msa0846300:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5_4:26205803-26205822 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_4:26205809-26205828 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_4:26205806-26205825 | Msa0846300:intron | 50.0% | |
| GTACCCTAGTACCCACAACT+TGG | + | chr5_4:26205882-26205901 | Msa0846300:intron | 50.0% | |
| TTGCTGCAAGGAGGTTGTGA+GGG | + | chr5_4:26206048-26206067 | Msa0846300:CDS | 50.0% | |
| ! | TACCGATGAGGCGTCTATCT+CGG | - | chr5_4:26206079-26206098 | None:intergenic | 50.0% |
| CTTGCAGTTCTATTCCGCAG+AGG | + | chr5_4:26206213-26206232 | Msa0846300:CDS | 50.0% | |
| AGATGAGTCTAGGGGGCAGA+TGG | - | chr5_4:26201890-26201909 | None:intergenic | 55.0% | |
| CACCTCACTTCCGAACAAGG+AGG | + | chr5_4:26201913-26201932 | Msa0846300:CDS | 55.0% | |
| CTCCTCCTTGTTCGGAAGTG+AGG | - | chr5_4:26201918-26201937 | None:intergenic | 55.0% | |
| CTCACTTCCGAACAAGGAGG+AGG | + | chr5_4:26201916-26201935 | Msa0846300:CDS | 55.0% | |
| CCGAACAAGGAGGAGGAGAA+AGG | + | chr5_4:26201923-26201942 | Msa0846300:CDS | 55.0% | |
| TGACAGTGGAAACGAGGAGG+AGG | + | chr5_4:26201989-26202008 | Msa0846300:CDS | 55.0% | |
| !! | GGTGGAGAAAGCGCTTCACA+TGG | + | chr5_4:26202010-26202029 | Msa0846300:CDS | 55.0% |
| ACGCATGTCATAAGCACGGG+AGG | - | chr5_4:26202081-26202100 | None:intergenic | 55.0% | |
| CCCGTGCTTATGACATGCGT+AGG | + | chr5_4:26202081-26202100 | Msa0846300:CDS | 55.0% | |
| GTAGTGAGGATGGAGGGACT+GGG | - | chr5_4:26203681-26203700 | None:intergenic | 55.0% | |
| AGTAGTGAGGATGGAGGGAC+TGG | - | chr5_4:26203682-26203701 | None:intergenic | 55.0% | |
| GTCCCTCCATCCTCACTACT+TGG | + | chr5_4:26203682-26203701 | Msa0846300:intron | 55.0% | |
| GAGTTGGGTCAGGTCTACTC+TGG | + | chr5_4:26203859-26203878 | Msa0846300:intron | 55.0% | |
| CTTGCCTCCCGGGTATACTA+AGG | - | chr5_4:26205078-26205097 | None:intergenic | 55.0% | |
| !! | TGCTTCTAAGGCTTGCCTCC+CGG | - | chr5_4:26205089-26205108 | None:intergenic | 55.0% |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr5_4:26205120-26205139 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr5_4:26205117-26205136 | Msa0846300:intron | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | + | chr5_4:26205168-26205187 | Msa0846300:intron | 55.0% | |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr5_4:26205457-26205476 | Msa0846300:intron | 55.0% | |
| GAGAGAGAGAGAGAGAGTGG+GGG | + | chr5_4:26205536-26205555 | Msa0846300:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5_4:26205795-26205814 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5_4:26205794-26205813 | Msa0846300:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5_4:26205795-26205814 | Msa0846300:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_4:26205801-26205820 | Msa0846300:intron | 55.0% | |
| CTTGCTGCAAGGAGGTTGTG+AGG | + | chr5_4:26206047-26206066 | Msa0846300:CDS | 55.0% | |
| TGCCGAGATAGACGCCTCAT+CGG | + | chr5_4:26206074-26206093 | Msa0846300:CDS | 55.0% | |
| CAGTTCTATTCCGCAGAGGG+AGG | + | chr5_4:26206217-26206236 | Msa0846300:CDS | 55.0% | |
| !! | GACGGAAAGGGTTGGTGGGA+GGG | - | chr5_4:26201836-26201855 | None:intergenic | 60.0% |
| ! | TGGCGACGGAAAGGGTTGGT+GGG | - | chr5_4:26201840-26201859 | None:intergenic | 60.0% |
| !! | GATGGCGGGAGAAGAGAGAG+AGG | - | chr5_4:26201872-26201891 | None:intergenic | 60.0% |
| TGAGTCTAGGGGGCAGATGG+CGG | - | chr5_4:26201887-26201906 | None:intergenic | 60.0% | |
| GTATCGTGCAACGTCGTCGG+CGG | + | chr5_4:26201948-26201967 | Msa0846300:CDS | 60.0% | |
| GGCAGAGGAGGAGATGACAG+TGG | + | chr5_4:26201975-26201994 | Msa0846300:CDS | 60.0% | |
| CAGTGGAAACGAGGAGGAGG+TGG | + | chr5_4:26201992-26202011 | Msa0846300:CDS | 60.0% | |
| !! | GCTTCTAAGGCTTGCCTCCC+GGG | - | chr5_4:26205088-26205107 | None:intergenic | 60.0% |
| GTGGGAGGGAGAGCGATGGA+AGG | - | chr5_4:26201822-26201841 | None:intergenic | 65.0% | |
| ! | GTTGGTGGGAGGGAGAGCGA+TGG | - | chr5_4:26201826-26201845 | None:intergenic | 65.0% |
| !! | CGACGGAAAGGGTTGGTGGG+AGG | - | chr5_4:26201837-26201856 | None:intergenic | 65.0% |
| GTGGCGACGGAAAGGGTTGG+TGG | - | chr5_4:26201841-26201860 | None:intergenic | 65.0% | |
| GGTGTGGCGACGGAAAGGGT+TGG | - | chr5_4:26201844-26201863 | None:intergenic | 65.0% | |
| GGAGAAGAGAGAGAGGCGGC+GGG | - | chr5_4:26201865-26201884 | None:intergenic | 65.0% | |
| GGGAGAAGAGAGAGAGGCGG+CGG | - | chr5_4:26201866-26201885 | None:intergenic | 65.0% | |
| GGCGGGAGAAGAGAGAGAGG+CGG | - | chr5_4:26201869-26201888 | None:intergenic | 65.0% | |
| GAGTCTAGGGGGCAGATGGC+GGG | - | chr5_4:26201886-26201905 | None:intergenic | 65.0% | |
| !! | CAGGAGGTGTCCTCCCTCTG+CGG | - | chr5_4:26206230-26206249 | None:intergenic | 65.0% |
| GGCGGGTGTGGCGACGGAAA+GGG | - | chr5_4:26201848-26201867 | None:intergenic | 70.0% | |
| AGAGAGAGAGGCGGCGGGTG+TGG | - | chr5_4:26201860-26201879 | None:intergenic | 70.0% | |
| TCGTGCAACGTCGTCGGCGG+CGG | + | chr5_4:26201951-26201970 | Msa0846300:CDS | 70.0% | |
| CGGCGGGTGTGGCGACGGAA+AGG | - | chr5_4:26201849-26201868 | None:intergenic | 75.0% | |
| AGAGGCGGCGGGTGTGGCGA+CGG | - | chr5_4:26201854-26201873 | None:intergenic | 75.0% | |
| TGCAACGTCGTCGGCGGCGG+CGG | + | chr5_4:26201954-26201973 | Msa0846300:CDS | 75.0% | |
| ! | GTCGTCGGCGGCGGCGGCAG+AGG | + | chr5_4:26201960-26201979 | Msa0846300:CDS | 85.0% |
| ! | GTCGGCGGCGGCGGCAGAGG+AGG | + | chr5_4:26201963-26201982 | Msa0846300:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 26201729 | 26206565 | 26201729 | ID=Msa0846300;Name=Msa0846300 |
| chr5_4 | mRNA | 26201729 | 26206565 | 26201729 | ID=Msa0846300-mRNA-1;Parent=Msa0846300;Name=Msa0846300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=66|1|1|1|1|1|5|245|268 |
| chr5_4 | exon | 26201729 | 26202140 | 26201729 | ID=Msa0846300-mRNA-1:exon:10285;Parent=Msa0846300-mRNA-1 |
| chr5_4 | exon | 26204549 | 26204648 | 26204549 | ID=Msa0846300-mRNA-1:exon:10286;Parent=Msa0846300-mRNA-1 |
| chr5_4 | exon | 26204727 | 26204862 | 26204727 | ID=Msa0846300-mRNA-1:exon:10287;Parent=Msa0846300-mRNA-1 |
| chr5_4 | exon | 26206009 | 26206095 | 26206009 | ID=Msa0846300-mRNA-1:exon:10288;Parent=Msa0846300-mRNA-1 |
| chr5_4 | exon | 26206183 | 26206565 | 26206183 | ID=Msa0846300-mRNA-1:exon:10289;Parent=Msa0846300-mRNA-1 |
| chr5_4 | five_prime_UTR | 26201729 | 26201794 | 26201729 | ID=Msa0846300-mRNA-1:five_prime_utr;Parent=Msa0846300-mRNA-1 |
| chr5_4 | CDS | 26201795 | 26202140 | 26201795 | ID=Msa0846300-mRNA-1:cds;Parent=Msa0846300-mRNA-1 |
| chr5_4 | CDS | 26204549 | 26204648 | 26204549 | ID=Msa0846300-mRNA-1:cds;Parent=Msa0846300-mRNA-1 |
| chr5_4 | CDS | 26204727 | 26204862 | 26204727 | ID=Msa0846300-mRNA-1:cds;Parent=Msa0846300-mRNA-1 |
| chr5_4 | CDS | 26206009 | 26206095 | 26206009 | ID=Msa0846300-mRNA-1:cds;Parent=Msa0846300-mRNA-1 |
| chr5_4 | CDS | 26206183 | 26206320 | 26206183 | ID=Msa0846300-mRNA-1:cds;Parent=Msa0846300-mRNA-1 |
| chr5_4 | three_prime_UTR | 26206321 | 26206565 | 26206321 | ID=Msa0846300-mRNA-1:three_prime_utr;Parent=Msa0846300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
