Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838670 | AES95230.1 | 92.157 | 357 | 22 | 2 | 1 | 356 | 1 | 352 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838670 | sp|Q8L540|LTO1_ARATH | 58.434 | 332 | 113 | 4 | 41 | 350 | 37 | 365 | 9.75e-129 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838670 | G7JYT3 | 92.157 | 357 | 22 | 2 | 1 | 356 | 1 | 352 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009530 | Msa0838670 | 0.834807 | 2.421228e-56 | -8.615850e-47 |
| Msa0011060 | Msa0838670 | 0.812645 | 3.819071e-51 | -8.615850e-47 |
| Msa0011100 | Msa0838670 | 0.813300 | 2.744314e-51 | -8.615850e-47 |
| Msa0013270 | Msa0838670 | -0.811965 | 5.376170e-51 | -8.615850e-47 |
| Msa0017710 | Msa0838670 | -0.803423 | 3.511043e-49 | -8.615850e-47 |
| Msa0024500 | Msa0838670 | 0.813304 | 2.738558e-51 | -8.615850e-47 |
| Msa0025570 | Msa0838670 | -0.802715 | 4.918272e-49 | -8.615850e-47 |
| Msa0034100 | Msa0838670 | 0.840055 | 1.094564e-57 | -8.615850e-47 |
| Msa0037270 | Msa0838670 | 0.831864 | 1.310924e-55 | -8.615850e-47 |
| Msa0041780 | Msa0838670 | 0.810040 | 1.404589e-50 | -8.615850e-47 |
| Msa0044530 | Msa0838670 | 0.810316 | 1.224874e-50 | -8.615850e-47 |
| Msa0044780 | Msa0838670 | 0.856485 | 3.116775e-62 | -8.615850e-47 |
| Msa0045810 | Msa0838670 | -0.806157 | 9.425376e-50 | -8.615850e-47 |
| Msa0065520 | Msa0838670 | 0.818156 | 2.270768e-52 | -8.615850e-47 |
| Msa0072390 | Msa0838670 | 0.811046 | 8.514245e-51 | -8.615850e-47 |
| Msa0073110 | Msa0838670 | -0.804145 | 2.486493e-49 | -8.615850e-47 |
| Msa0081120 | Msa0838670 | 0.840747 | 7.218723e-58 | -8.615850e-47 |
| Msa0081290 | Msa0838670 | 0.811486 | 6.835717e-51 | -8.615850e-47 |
| Msa0081790 | Msa0838670 | 0.842458 | 2.553961e-58 | -8.615850e-47 |
| Msa0085580 | Msa0838670 | 0.803647 | 3.155077e-49 | -8.615850e-47 |
| Msa0091090 | Msa0838670 | 0.820550 | 6.464649e-53 | -8.615850e-47 |
| Msa0091220 | Msa0838670 | 0.803340 | 3.653562e-49 | -8.615850e-47 |
| Msa0091240 | Msa0838670 | 0.800333 | 1.513764e-48 | -8.615850e-47 |
| Msa0106540 | Msa0838670 | -0.829855 | 4.074300e-55 | -8.615850e-47 |
| Msa0608780 | Msa0838670 | 0.811360 | 7.280071e-51 | -8.615850e-47 |
| Msa0610240 | Msa0838670 | 0.802895 | 4.515263e-49 | -8.615850e-47 |
| Msa0644220 | Msa0838670 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0649250 | Msa0838670 | 0.815583 | 8.583522e-52 | -8.615850e-47 |
| Msa0659020 | Msa0838670 | 0.842465 | 2.544158e-58 | -8.615850e-47 |
| Msa0684030 | Msa0838670 | 0.829425 | 5.183844e-55 | -8.615850e-47 |
| Msa0703430 | Msa0838670 | 0.802769 | 4.793946e-49 | -8.615850e-47 |
| Msa0719270 | Msa0838670 | -0.805463 | 1.318610e-49 | -8.615850e-47 |
| Msa0726170 | Msa0838670 | 0.805139 | 1.541708e-49 | -8.615850e-47 |
| Msa0732970 | Msa0838670 | -0.807457 | 5.008545e-50 | -8.615850e-47 |
| Msa0733240 | Msa0838670 | 0.842563 | 2.395964e-58 | -8.615850e-47 |
| Msa0745140 | Msa0838670 | -0.805303 | 1.424585e-49 | -8.615850e-47 |
| Msa0756670 | Msa0838670 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
| Msa0758780 | Msa0838670 | 0.894840 | 1.687837e-75 | -8.615850e-47 |
| Msa0758810 | Msa0838670 | 0.898521 | 4.893506e-77 | -8.615850e-47 |
| Msa0761830 | Msa0838670 | -0.825292 | 5.076517e-54 | -8.615850e-47 |
| Msa0769910 | Msa0838670 | 0.831512 | 1.600341e-55 | -8.615850e-47 |
| Msa0772220 | Msa0838670 | -0.806568 | 7.721238e-50 | -8.615850e-47 |
| Msa0773960 | Msa0838670 | -0.818026 | 2.429440e-52 | -8.615850e-47 |
| Msa0774360 | Msa0838670 | 0.823600 | 1.269055e-53 | -8.615850e-47 |
| Msa0775660 | Msa0838670 | -0.816570 | 5.165962e-52 | -8.615850e-47 |
| Msa0776590 | Msa0838670 | 0.812660 | 3.792061e-51 | -8.615850e-47 |
| Msa0776640 | Msa0838670 | -0.805027 | 1.627239e-49 | -8.615850e-47 |
| Msa0802950 | Msa0838670 | 0.804254 | 2.359560e-49 | -8.615850e-47 |
| Msa0804170 | Msa0838670 | -0.808860 | 2.517054e-50 | -8.615850e-47 |
| Msa0807870 | Msa0838670 | 0.814053 | 1.874309e-51 | -8.615850e-47 |
| Msa0812020 | Msa0838670 | 0.835981 | 1.222657e-56 | -8.615850e-47 |
| Msa0823310 | Msa0838670 | 0.843006 | 1.826575e-58 | -8.615850e-47 |
| Msa0825920 | Msa0838670 | -0.802132 | 6.486996e-49 | -8.615850e-47 |
| Msa0836060 | Msa0838670 | 0.801743 | 7.797880e-49 | -8.615850e-47 |
| Msa0838620 | Msa0838670 | 0.883291 | 5.079974e-71 | -8.615850e-47 |
| Msa0838670 | Msa0840520 | -0.819317 | 1.237850e-52 | -8.615850e-47 |
| Msa0838670 | Msa0846300 | 0.818730 | 1.682777e-52 | -8.615850e-47 |
| Msa0838670 | Msa0848670 | 0.825182 | 5.387944e-54 | -8.615850e-47 |
| Msa0838670 | Msa0852090 | 0.815372 | 9.560300e-52 | -8.615850e-47 |
| Msa0838670 | Msa0853590 | -0.809375 | 1.951596e-50 | -8.615850e-47 |
| Msa0838670 | Msa0876270 | 0.816770 | 4.658411e-52 | -8.615850e-47 |
| Msa0838670 | Msa0880910 | -0.801305 | 9.586585e-49 | -8.615850e-47 |
| Msa0838670 | Msa0925630 | 0.820148 | 7.992286e-53 | -8.615850e-47 |
| Msa0838670 | Msa0930770 | -0.812506 | 4.097099e-51 | -8.615850e-47 |
| Msa0838670 | Msa0932140 | -0.808070 | 3.709418e-50 | -8.615850e-47 |
| Msa0838670 | Msa0932150 | -0.807837 | 4.159385e-50 | -8.615850e-47 |
| Msa0838670 | Msa0945030 | -0.820028 | 8.515117e-53 | -8.615850e-47 |
| Msa0838670 | Msa0967900 | 0.836931 | 7.004621e-57 | -8.615850e-47 |
| Msa0838670 | Msa0970270 | -0.820695 | 5.987891e-53 | -8.615850e-47 |
| Msa0838670 | Msa0998660 | 0.811882 | 5.603924e-51 | -8.615850e-47 |
| Msa0838670 | Msa1002970 | 0.817177 | 3.774669e-52 | -8.615850e-47 |
| Msa0838670 | Msa1024570 | -0.802076 | 6.659066e-49 | -8.615850e-47 |
| Msa0838670 | Msa1029820 | -0.801006 | 1.103448e-48 | -8.615850e-47 |
| Msa0838670 | Msa1031530 | 0.809580 | 1.764244e-50 | -8.615850e-47 |
| Msa0838670 | Msa1035640 | 0.810803 | 9.611335e-51 | -8.615850e-47 |
| Msa0838670 | Msa1039440 | 0.812987 | 3.214865e-51 | -8.615850e-47 |
| Msa0838670 | Msa1041060 | -0.807636 | 4.588025e-50 | -8.615850e-47 |
| Msa0838670 | Msa1057620 | 0.810002 | 1.431155e-50 | -8.615850e-47 |
| Msa0838670 | Msa1070630 | 0.830890 | 2.275998e-55 | -8.615850e-47 |
| Msa0838670 | Msa1088400 | 0.836371 | 9.730220e-57 | -8.615850e-47 |
| Msa0838670 | Msa1088740 | 0.818408 | 1.991351e-52 | -8.615850e-47 |
| Msa0838670 | Msa1093190 | 0.811798 | 5.846758e-51 | -8.615850e-47 |
| Msa0838670 | Msa1127200 | -0.803742 | 3.015186e-49 | -8.615850e-47 |
| Msa0838670 | Msa1129880 | 0.803644 | 3.158876e-49 | -8.615850e-47 |
| Msa0838670 | Msa1133440 | 0.814078 | 1.850476e-51 | -8.615850e-47 |
| Msa0838670 | Msa1158450 | 0.824955 | 6.095722e-54 | -8.615850e-47 |
| Msa0838670 | Msa1165460 | -0.844549 | 7.055994e-59 | -8.615850e-47 |
| Msa0838670 | Msa1186340 | -0.801131 | 1.040657e-48 | -8.615850e-47 |
| Msa0838670 | Msa1190350 | 0.828187 | 1.033241e-54 | -8.615850e-47 |
| Msa0838670 | Msa1197720 | -0.808698 | 2.725172e-50 | -8.615850e-47 |
| Msa0838670 | Msa1199580 | 0.824695 | 7.021989e-54 | -8.615850e-47 |
| Msa0838670 | Msa1205270 | 0.838992 | 2.067715e-57 | -8.615850e-47 |
| Msa0838670 | Msa1236860 | 0.802038 | 6.779865e-49 | -8.615850e-47 |
| Msa0838670 | Msa1266120 | 0.826914 | 2.088304e-54 | -8.615850e-47 |
| Msa0838670 | Msa1286860 | 0.807981 | 3.874862e-50 | -8.615850e-47 |
| Msa0838670 | Msa1295210 | 0.824504 | 7.786387e-54 | -8.615850e-47 |
| Msa0838670 | Msa1297220 | 0.805654 | 1.202355e-49 | -8.615850e-47 |
| Msa0838670 | Msa1317240 | 0.805138 | 1.542378e-49 | -8.615850e-47 |
| Msa0838670 | Msa1323260 | 0.845443 | 4.047934e-59 | -8.615850e-47 |
| Msa0838670 | Msa1328630 | 0.836478 | 9.138649e-57 | -8.615850e-47 |
| Msa0838670 | Msa1328720 | 0.825807 | 3.832325e-54 | -8.615850e-47 |
| Msa0838670 | Msa1332690 | 0.805974 | 1.029954e-49 | -8.615850e-47 |
| Msa0838670 | Msa1342360 | 0.801924 | 7.156245e-49 | -8.615850e-47 |
| Msa0838670 | Msa1343450 | 0.818102 | 2.335724e-52 | -8.615850e-47 |
| Msa0838670 | Msa1352600 | 0.825403 | 4.778444e-54 | -8.615850e-47 |
| Msa0838670 | Msa1352630 | 0.814313 | 1.641638e-51 | -8.615850e-47 |
| Msa0838670 | Msa1361980 | -0.811971 | 5.359909e-51 | -8.615850e-47 |
| Msa0838670 | Msa1368390 | -0.806489 | 8.022740e-50 | -8.615850e-47 |
| Msa0838670 | Msa1375000 | 0.827254 | 1.731517e-54 | -8.615850e-47 |
| Msa0838670 | Msa1376310 | -0.800176 | 1.629649e-48 | -8.615850e-47 |
| Msa0838670 | Msa1382750 | 0.818672 | 1.734507e-52 | -8.615850e-47 |
| Msa0838670 | Msa1384410 | 0.812114 | 4.988754e-51 | -8.615850e-47 |
| Msa0838670 | Msa1400290 | 0.832895 | 7.279455e-56 | -8.615850e-47 |
| Msa0838670 | Msa1405830 | -0.828779 | 7.435009e-55 | -8.615850e-47 |
| Msa0838670 | Msa1412740 | 0.809506 | 1.829735e-50 | -8.615850e-47 |
| Msa0838670 | Msa1413020 | -0.810935 | 9.000212e-51 | -8.615850e-47 |
| Msa0838670 | Msa1428230 | 0.824073 | 9.835284e-54 | -8.615850e-47 |
| Msa0838670 | Msa1436620 | -0.813192 | 2.897958e-51 | -8.615850e-47 |
| Msa0838670 | Msa1450630 | 0.842339 | 2.747471e-58 | -8.615850e-47 |
| Msa0838670 | Msa1456620 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa0838670 | Msa1457770 | -0.820846 | 5.527520e-53 | -8.615850e-47 |
| Msa0838670 | Msa1461660 | -0.820146 | 8.000050e-53 | -8.615850e-47 |
| Msa0838670 | Msa1462780 | -0.805346 | 1.395557e-49 | -8.615850e-47 |
| Msa0121320 | Msa0838670 | -0.818458 | 1.940071e-52 | -8.615850e-47 |
| Msa0128110 | Msa0838670 | 0.833442 | 5.321186e-56 | -8.615850e-47 |
| Msa0132080 | Msa0838670 | 0.805063 | 1.599844e-49 | -8.615850e-47 |
| Msa0136180 | Msa0838670 | 0.848567 | 5.646447e-60 | -8.615850e-47 |
| Msa0137010 | Msa0838670 | 0.812500 | 4.110105e-51 | -8.615850e-47 |
| Msa0166180 | Msa0838670 | -0.810971 | 8.841290e-51 | -8.615850e-47 |
| Msa0173600 | Msa0838670 | 0.824900 | 6.281326e-54 | -8.615850e-47 |
| Msa0183200 | Msa0838670 | 0.816190 | 6.284003e-52 | -8.615850e-47 |
| Msa0183310 | Msa0838670 | 0.812088 | 5.055443e-51 | -8.615850e-47 |
| Msa0193680 | Msa0838670 | -0.800296 | 1.540434e-48 | -8.615850e-47 |
| Msa0211460 | Msa0838670 | -0.817928 | 2.556844e-52 | -8.615850e-47 |
| Msa0219840 | Msa0838670 | -0.813473 | 2.514603e-51 | -8.615850e-47 |
| Msa0225070 | Msa0838670 | 0.835399 | 1.716464e-56 | -8.615850e-47 |
| Msa0236940 | Msa0838670 | -0.814327 | 1.630107e-51 | -8.615850e-47 |
| Msa0364910 | Msa0838670 | 0.808398 | 3.158311e-50 | -8.615850e-47 |
| Msa0378310 | Msa0838670 | 0.829320 | 5.499756e-55 | -8.615850e-47 |
| Msa0379480 | Msa0838670 | -0.825926 | 3.590371e-54 | -8.615850e-47 |
| Msa0385770 | Msa0838670 | 0.814095 | 1.833971e-51 | -8.615850e-47 |
| Msa0386880 | Msa0838670 | -0.817469 | 3.244280e-52 | -8.615850e-47 |
| Msa0404060 | Msa0838670 | 0.800726 | 1.258832e-48 | -8.615850e-47 |
| Msa0404140 | Msa0838670 | -0.814921 | 1.204516e-51 | -8.615850e-47 |
| Msa0412580 | Msa0838670 | 0.821782 | 3.361580e-53 | -8.615850e-47 |
| Msa0418100 | Msa0838670 | -0.801413 | 9.112449e-49 | -8.615850e-47 |
| Msa0428330 | Msa0838670 | 0.810289 | 1.241072e-50 | -8.615850e-47 |
| Msa0430130 | Msa0838670 | -0.808705 | 2.716239e-50 | -8.615850e-47 |
| Msa0456450 | Msa0838670 | 0.802941 | 4.417492e-49 | -8.615850e-47 |
| Msa0457070 | Msa0838670 | 0.841532 | 4.487288e-58 | -8.615850e-47 |
| Msa0467170 | Msa0838670 | -0.826754 | 2.279942e-54 | -8.615850e-47 |
| Msa0467330 | Msa0838670 | -0.827466 | 1.540365e-54 | -8.615850e-47 |
| Msa0468360 | Msa0838670 | 0.835782 | 1.373267e-56 | -8.615850e-47 |
| Msa0475330 | Msa0838670 | -0.800539 | 1.374282e-48 | -8.615850e-47 |
| Msa0477900 | Msa0838670 | -0.805818 | 1.110829e-49 | -8.615850e-47 |
| Msa0240590 | Msa0838670 | 0.813376 | 2.641739e-51 | -8.615850e-47 |
| Msa0260980 | Msa0838670 | -0.805644 | 1.208612e-49 | -8.615850e-47 |
| Msa0266140 | Msa0838670 | 0.809122 | 2.211934e-50 | -8.615850e-47 |
| Msa0267450 | Msa0838670 | 0.826927 | 2.073879e-54 | -8.615850e-47 |
| Msa0267510 | Msa0838670 | 0.829856 | 4.072564e-55 | -8.615850e-47 |
| Msa0276800 | Msa0838670 | 0.805578 | 1.247833e-49 | -8.615850e-47 |
| Msa0304060 | Msa0838670 | 0.810539 | 1.096391e-50 | -8.615850e-47 |
| Msa0358470 | Msa0838670 | -0.807976 | 3.885685e-50 | -8.615850e-47 |
| Msa0484210 | Msa0838670 | 0.880462 | 5.379813e-70 | -8.615850e-47 |
| Msa0567330 | Msa0838670 | -0.808098 | 3.659849e-50 | -8.615850e-47 |
| Msa0568460 | Msa0838670 | 0.812372 | 4.381732e-51 | -8.615850e-47 |
| Msa0575380 | Msa0838670 | -0.806876 | 6.647684e-50 | -8.615850e-47 |
| Msa0576320 | Msa0838670 | -0.810309 | 1.228712e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838670 | MtrunA17_Chr5g0406291 | 90.476 | 357 | 27 | 3 | 1 | 356 | 1 | 351 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838670 | AT4G35760.1 | 58.434 | 332 | 113 | 4 | 41 | 350 | 37 | 365 | 9.91e-130 | 376 |
| Msa0838670 | AT4G35760.2 | 58.095 | 315 | 107 | 4 | 41 | 333 | 37 | 348 | 2.97e-120 | 352 |
Find 98 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCAGTTGAGGAGGTTTC+TGG | 0.145576 | 5_4:-13137857 | None:intergenic |
| TTCCCCACATGGATTATTAA+TGG | 0.246472 | 5_4:+13140982 | Msa0838670:CDS |
| GTGCATATGTATGTCTAAAA+AGG | 0.267739 | 5_4:-13141254 | None:intergenic |
| GATTCCTGAGATTAGCTTAT+AGG | 0.278635 | 5_4:-13137882 | None:intergenic |
| GGTGTACCTCTTCCTTTGAT+TGG | 0.284171 | 5_4:+13138752 | Msa0838670:intron |
| TTGAGAATTGGAAAATTCTA+TGG | 0.293650 | 5_4:-13137673 | None:intergenic |
| CTAAAATGTATGGAGCTTTC+TGG | 0.298863 | 5_4:+13140253 | Msa0838670:CDS |
| GTAATCTCGGTTGCAAAATA+TGG | 0.311759 | 5_4:-13140174 | None:intergenic |
| ACAAAGAAGAATTTACCTTT+TGG | 0.320249 | 5_4:+13138821 | Msa0838670:CDS |
| CAATAGGAGCAAGATGATTC+AGG | 0.349539 | 5_4:-13138941 | None:intergenic |
| GTGTACCTCTTCCTTTGATT+GGG | 0.355997 | 5_4:+13138753 | Msa0838670:CDS |
| AGCAAGGTATTTGCATTCAA+TGG | 0.357451 | 5_4:+13140227 | Msa0838670:CDS |
| GGGTTCGGTCTGGGTTGGTT+CGG | 0.374341 | 5_4:-13137770 | None:intergenic |
| TTGCTCCTATTGCCTACTTT+CGG | 0.377075 | 5_4:+13138952 | Msa0838670:CDS |
| ATCTCAGGAATCGCCGGAAT+CGG | 0.386284 | 5_4:+13137893 | Msa0838670:CDS |
| GCAAGAGAAGTACAAACAAC+TGG | 0.391109 | 5_4:+13139120 | Msa0838670:CDS |
| CATCGGAGCCGGTGAACTTA+AGG | 0.397674 | 5_4:-13137943 | None:intergenic |
| GGTTTCGATGAATCCGATTC+CGG | 0.399135 | 5_4:-13137906 | None:intergenic |
| TTTCTGGTGTTCACACTGTC+TGG | 0.401462 | 5_4:+13140269 | Msa0838670:CDS |
| TGCTTAGACGCTAAAATTGA+AGG | 0.402247 | 5_4:+13140958 | Msa0838670:CDS |
| AACTTCTCGATACAGATGTT+TGG | 0.404936 | 5_4:+13140856 | Msa0838670:intron |
| ACCTCTTCCTTTGATTGGGA+TGG | 0.417711 | 5_4:+13138757 | Msa0838670:CDS |
| GTAATCACTATTGAGTATAT+TGG | 0.422495 | 5_4:-13137996 | None:intergenic |
| TTCCTCTTGATACAGAGGTT+TGG | 0.423806 | 5_4:+13141328 | Msa0838670:three_prime_UTR |
| GAGAACCGAAAGTAGGCAAT+AGG | 0.426376 | 5_4:-13138957 | None:intergenic |
| GCAGTTGTTTATTGCTAGCT+TGG | 0.427082 | 5_4:+13139147 | Msa0838670:CDS |
| TGAAGGTGGCCATTGAGAAT+TGG | 0.428234 | 5_4:-13137685 | None:intergenic |
| AATGCTCAATTAGTATTGCT+TGG | 0.431355 | 5_4:+13138857 | Msa0838670:CDS |
| GAGCAAGTGCCACCGCCGAC+AGG | 0.433146 | 5_4:-13137974 | None:intergenic |
| GAGTGGTGAAGTGGAATTAT+CGG | 0.436626 | 5_4:+13141108 | Msa0838670:CDS |
| CTTGTACAAAGGGTTCGGTC+TGG | 0.436938 | 5_4:-13137780 | None:intergenic |
| TTGTACAAAGGGTTCGGTCT+GGG | 0.437192 | 5_4:-13137779 | None:intergenic |
| GTCTGGGTTGGTTCGGAGAA+CGG | 0.440846 | 5_4:-13137763 | None:intergenic |
| CTCTTCTCGTTTCTTCGCAC+CGG | 0.443701 | 5_4:+13137730 | Msa0838670:CDS |
| TCGGAGTTGGCACAAGCGTC+TGG | 0.447827 | 5_4:+13141127 | Msa0838670:CDS |
| GTCTTCTGCCCTGTCGGCGG+TGG | 0.451403 | 5_4:+13137965 | Msa0838670:CDS |
| CAGAAACCTCCTCAACTGAT+TGG | 0.455868 | 5_4:+13137858 | Msa0838670:CDS |
| GCAAGGTATTTGCATTCAAT+GGG | 0.463886 | 5_4:+13140228 | Msa0838670:CDS |
| ACGTGAGGCGGCGAAGCAAT+TGG | 0.470992 | 5_4:+13140879 | Msa0838670:CDS |
| GGTGACAATTCTTGTACAAA+GGG | 0.475927 | 5_4:-13137790 | None:intergenic |
| GAAATGCTCCTCTTCATCTT+CGG | 0.480605 | 5_4:+13137832 | Msa0838670:CDS |
| CAATTCTTGTACAAAGGGTT+CGG | 0.481586 | 5_4:-13137785 | None:intergenic |
| GTTCCTGTTCGATATCCGTC+AGG | 0.487353 | 5_4:-13140919 | None:intergenic |
| GGTAGAATTAGCACTGCTAT+AGG | 0.491448 | 5_4:-13139191 | None:intergenic |
| TTGGATCTGTTAACCCCAAA+AGG | 0.493640 | 5_4:-13138836 | None:intergenic |
| TCAATGGGAGCTAAAATGTA+TGG | 0.498821 | 5_4:+13140243 | Msa0838670:CDS |
| CTTGCTTACCTTAAGTTCAC+CGG | 0.499908 | 5_4:+13137935 | Msa0838670:CDS |
| AGGTGACAATTCTTGTACAA+AGG | 0.500035 | 5_4:-13137791 | None:intergenic |
| CACATGGATTATTAATGGCC+AGG | 0.503308 | 5_4:+13140987 | Msa0838670:CDS |
| TTTCCTGACGGATATCGAAC+AGG | 0.504131 | 5_4:+13140916 | Msa0838670:CDS |
| AGCACTAGCAGTTGCCATTG+AGG | 0.509543 | 5_4:-13138888 | None:intergenic |
| AAGCAATACTAATTGAGCAT+TGG | 0.514041 | 5_4:-13138855 | None:intergenic |
| GGAGAACGGTTTAAACGAAC+CGG | 0.514067 | 5_4:-13137749 | None:intergenic |
| TGTGAGAATGAATAACGAAA+AGG | 0.525624 | 5_4:-13138984 | None:intergenic |
| GCTTGGAAGCACAACCTCAA+TGG | 0.530217 | 5_4:+13138874 | Msa0838670:CDS |
| ACAAAGGGTTCGGTCTGGGT+TGG | 0.532809 | 5_4:-13137775 | None:intergenic |
| ACAAGAATTGTCACCTTCAG+AGG | 0.535413 | 5_4:+13137798 | Msa0838670:CDS |
| AAATTGAAGGTTTCCCCACA+TGG | 0.537433 | 5_4:+13140971 | Msa0838670:CDS |
| AAGCTAATCTCAGGAATCGC+CGG | 0.538082 | 5_4:+13137887 | Msa0838670:CDS |
| GTTATTCATTCTCACACTCA+AGG | 0.544153 | 5_4:+13138991 | Msa0838670:CDS |
| TCCGATGTCTTCTGCCCTGT+CGG | 0.546966 | 5_4:+13137959 | Msa0838670:CDS |
| TGGACCTATAAGCTAATCTC+AGG | 0.548745 | 5_4:+13137878 | Msa0838670:CDS |
| AGCAAGTGCCACCGCCGACA+GGG | 0.551052 | 5_4:-13137973 | None:intergenic |
| TGATGTCTACTTTAGCAGCA+TGG | 0.552378 | 5_4:+13140137 | Msa0838670:intron |
| TCAGGTTCTGAGTGGTGAAG+TGG | 0.555245 | 5_4:+13141099 | Msa0838670:intron |
| TGAAGTGGAATTATCGGAGT+TGG | 0.556007 | 5_4:+13141114 | Msa0838670:CDS |
| GCCATCCCAATCAAAGGAAG+AGG | 0.559625 | 5_4:-13138758 | None:intergenic |
| TTCTGGTTCCGAAGATGAAG+AGG | 0.564283 | 5_4:-13137840 | None:intergenic |
| GAAGAGGAGCATTTCAGAGG+TGG | 0.566119 | 5_4:-13137824 | None:intergenic |
| CATCTCCTTCAGGTTCTGAG+TGG | 0.568206 | 5_4:+13141091 | Msa0838670:intron |
| AGGGCAGAAGACATCGGAGC+CGG | 0.571695 | 5_4:-13137954 | None:intergenic |
| GATGAAGAGGAGCATTTCAG+AGG | 0.577501 | 5_4:-13137827 | None:intergenic |
| CTTATAGGTCCAATCAGTTG+AGG | 0.580977 | 5_4:-13137867 | None:intergenic |
| CAAGAGAAGTACAAACAACT+GGG | 0.583508 | 5_4:+13139121 | Msa0838670:CDS |
| AGGACAAGAGAACCGAAAGT+AGG | 0.584444 | 5_4:-13138964 | None:intergenic |
| ATAGGTCCAATCAGTTGAGG+AGG | 0.590947 | 5_4:-13137864 | None:intergenic |
| TAACATTCCTCTTGATACAG+AGG | 0.591280 | 5_4:+13141323 | Msa0838670:three_prime_UTR |
| GCTTGATGGAGTTGTAATCT+CGG | 0.593784 | 5_4:-13140187 | None:intergenic |
| GTCCAAACCTCTGTATCAAG+AGG | 0.593909 | 5_4:-13141330 | None:intergenic |
| GCCGACAGGGCAGAAGACAT+CGG | 0.598595 | 5_4:-13137960 | None:intergenic |
| TACGCAGCCATCCCAATCAA+AGG | 0.601856 | 5_4:-13138764 | None:intergenic |
| AGAATTAGCACTGCTATAGG+AGG | 0.607313 | 5_4:-13139188 | None:intergenic |
| TGGCCATTAATAATCCATGT+GGG | 0.611279 | 5_4:-13140985 | None:intergenic |
| GATGTCTTCTGCCCTGTCGG+CGG | 0.613554 | 5_4:+13137962 | Msa0838670:CDS |
| CGGTGAACTTAAGGTAAGCA+AGG | 0.623060 | 5_4:-13137934 | None:intergenic |
| GCAGTGCTAATTCTACCTCA+AGG | 0.623222 | 5_4:+13139197 | Msa0838670:CDS |
| GCGAAGAAACGAGAAGAGGA+AGG | 0.634644 | 5_4:-13137725 | None:intergenic |
| CTGGCCATTAATAATCCATG+TGG | 0.635561 | 5_4:-13140986 | None:intergenic |
| CGGTGCGAAGAAACGAGAAG+AGG | 0.639817 | 5_4:-13137729 | None:intergenic |
| TCAGAGGTGGAAACCTCTGA+AGG | 0.641484 | 5_4:-13137811 | None:intergenic |
| ACAGATGTTTGGACGTGAGG+CGG | 0.647976 | 5_4:+13140867 | Msa0838670:intron |
| GATACAGATGTTTGGACGTG+AGG | 0.652504 | 5_4:+13140864 | Msa0838670:intron |
| GGCGAAGCAATTGGATTACG+TGG | 0.657076 | 5_4:+13140888 | Msa0838670:CDS |
| GGCCATTAATAATCCATGTG+GGG | 0.662317 | 5_4:-13140984 | None:intergenic |
| CTTAAGGTAAGCAAGGTACG+AGG | 0.662511 | 5_4:-13137927 | None:intergenic |
| TGATAGTGTTGTAACAGTGA+AGG | 0.677955 | 5_4:-13137702 | None:intergenic |
| TAGTGTTGTAACAGTGAAGG+TGG | 0.684390 | 5_4:-13137699 | None:intergenic |
| AGATGATTCAGGAAACGCTG+TGG | 0.726566 | 5_4:-13138930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATATTATCTACTTATAT+AGG | - | chr5_4:13138330-13138349 | None:intergenic | 15.0% |
| !!! | CATAGTTATTTAAAACTTAA+AGG | - | chr5_4:13138567-13138586 | None:intergenic | 15.0% |
| !! | TAAAATGGAAATTTCAAAAA+GGG | - | chr5_4:13139088-13139107 | None:intergenic | 15.0% |
| !! | ACAAATTAGTTAGTTAGTTA+AGG | - | chr5_4:13138048-13138067 | None:intergenic | 20.0% |
| !!! | CTATTTTCACAAATTATTAC+CGG | - | chr5_4:13138399-13138418 | None:intergenic | 20.0% |
| !!! | AAAAGCATCAAATAAAACAT+AGG | - | chr5_4:13138660-13138679 | None:intergenic | 20.0% |
| !! | AAATATTGTGTTAATGAAAG+TGG | + | chr5_4:13138715-13138734 | Msa0838670:intron | 20.0% |
| !! | AAAAAGGAAATAGAAAAAGT+TGG | - | chr5_4:13139045-13139064 | None:intergenic | 20.0% |
| !! | CTAAAATGGAAATTTCAAAA+AGG | - | chr5_4:13139089-13139108 | None:intergenic | 20.0% |
| !!! | CTTTTTGAAATTTCCATTTT+AGG | + | chr5_4:13139087-13139106 | Msa0838670:intron | 20.0% |
| !! | TATAACACAAACTAAAGTTA+TGG | - | chr5_4:13140552-13140571 | None:intergenic | 20.0% |
| !! | ATTACCAAGAATAGAAAAAT+AGG | - | chr5_4:13140799-13140818 | None:intergenic | 20.0% |
| !! | TTCTATCAAAAACATTAACT+AGG | - | chr5_4:13141172-13141191 | None:intergenic | 20.0% |
| ! | TTGAGAATTGGAAAATTCTA+TGG | - | chr5_4:13137676-13137695 | None:intergenic | 25.0% |
| !! | TAGAATTTTCCAATTCTCAA+TGG | + | chr5_4:13137676-13137695 | Msa0838670:exon | 25.0% |
| ! | GTAATCACTATTGAGTATAT+TGG | - | chr5_4:13137999-13138018 | None:intergenic | 25.0% |
| ! | ATAACCATTTATCATAGAAC+TGG | + | chr5_4:13138136-13138155 | Msa0838670:intron | 25.0% |
| !! | ACAAAGAAGAATTTACCTTT+TGG | + | chr5_4:13138821-13138840 | Msa0838670:CDS | 25.0% |
| !! | CAAAGAAGAATTTACCTTTT+GGG | + | chr5_4:13138822-13138841 | Msa0838670:CDS | 25.0% |
| !! | AAAGAAGAATTTACCTTTTG+GGG | + | chr5_4:13138823-13138842 | Msa0838670:CDS | 25.0% |
| !!! | AAATTTCCATTTTAGGACAT+TGG | + | chr5_4:13139094-13139113 | Msa0838670:intron | 25.0% |
| !! | TTTCATGAGATTTTACATTC+AGG | + | chr5_4:13139353-13139372 | Msa0838670:intron | 25.0% |
| ! | AGCTTAGAAAAAAGGAATAT+TGG | - | chr5_4:13139408-13139427 | None:intergenic | 25.0% |
| ! | AAAGCACAAAAAATACATGA+AGG | - | chr5_4:13139509-13139528 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTAAGGCTTTTAC+AGG | - | chr5_4:13139696-13139715 | None:intergenic | 25.0% |
| ! | CAAATAATAGCAAATGGAAA+TGG | + | chr5_4:13139734-13139753 | Msa0838670:intron | 25.0% |
| ! | ACATTATCAAAACTACTTGA+GGG | - | chr5_4:13139763-13139782 | None:intergenic | 25.0% |
| ! | TACATTATCAAAACTACTTG+AGG | - | chr5_4:13139764-13139783 | None:intergenic | 25.0% |
| ! | TTTCAAGCTTCTTAAAATCA+CGG | + | chr5_4:13140408-13140427 | Msa0838670:intron | 25.0% |
| ! | AGTTATCAAAATCAAACTTC+AGG | + | chr5_4:13140579-13140598 | Msa0838670:intron | 25.0% |
| ! | AGGAATGTATCTTTCAAAAA+AGG | + | chr5_4:13140599-13140618 | Msa0838670:intron | 25.0% |
| ! | TTCAATTGGATTCGTATATT+TGG | + | chr5_4:13140666-13140685 | Msa0838670:intron | 25.0% |
| !!! | TCAACCTATTTTTCTATTCT+TGG | + | chr5_4:13140792-13140811 | Msa0838670:intron | 25.0% |
| !! | ATAAATGGCCATAATTTGCT+GGG | - | chr5_4:13138292-13138311 | None:intergenic | 30.0% |
| CAATTGTGATAGCTCATAAA+TGG | - | chr5_4:13138307-13138326 | None:intergenic | 30.0% | |
| AAGCAATACTAATTGAGCAT+TGG | - | chr5_4:13138858-13138877 | None:intergenic | 30.0% | |
| AATGCTCAATTAGTATTGCT+TGG | + | chr5_4:13138857-13138876 | Msa0838670:CDS | 30.0% | |
| TGTGAGAATGAATAACGAAA+AGG | - | chr5_4:13138987-13139006 | None:intergenic | 30.0% | |
| ATACAGTAATATTCACCTTG+AGG | - | chr5_4:13139215-13139234 | None:intergenic | 30.0% | |
| ATTGATGCTAGTATTTCACT+AGG | + | chr5_4:13139303-13139322 | Msa0838670:intron | 30.0% | |
| ! | CACTAGGTTGAACAAATTTA+AGG | + | chr5_4:13139319-13139338 | Msa0838670:intron | 30.0% |
| TCGGTAGAATGTATTTAATC+TGG | + | chr5_4:13139464-13139483 | Msa0838670:intron | 30.0% | |
| CAAACATTCAACTGAAAGAA+GGG | - | chr5_4:13139587-13139606 | None:intergenic | 30.0% | |
| GGAGTTAATTATGCTTAACA+CGG | - | chr5_4:13139625-13139644 | None:intergenic | 30.0% | |
| !!! | CCACTACACTTTTTTCTTTA+AGG | - | chr5_4:13139706-13139725 | None:intergenic | 30.0% |
| ! | CCTTAAAGAAAAAAGTGTAG+TGG | + | chr5_4:13139703-13139722 | Msa0838670:intron | 30.0% |
| !! | AGAAAAAAGTGTAGTGGATT+TGG | + | chr5_4:13139709-13139728 | Msa0838670:intron | 30.0% |
| TTGGCACAAATAATAGCAAA+TGG | + | chr5_4:13139728-13139747 | Msa0838670:intron | 30.0% | |
| GTACAAATGTTGTCAAATAG+TGG | + | chr5_4:13139792-13139811 | Msa0838670:intron | 30.0% | |
| ATCCTTCAAAATTTGGTCAT+AGG | - | chr5_4:13139864-13139883 | None:intergenic | 30.0% | |
| !! | TATGACCAAATTTTGAAGGA+TGG | + | chr5_4:13139863-13139882 | Msa0838670:intron | 30.0% |
| AAAATCCTCAATAAAATGCC+GGG | - | chr5_4:13139895-13139914 | None:intergenic | 30.0% | |
| CAAAATCCTCAATAAAATGC+CGG | - | chr5_4:13139896-13139915 | None:intergenic | 30.0% | |
| TGATGACATTATACAAGTCA+GGG | - | chr5_4:13139947-13139966 | None:intergenic | 30.0% | |
| ACTTGTATAATGTCATCACA+TGG | + | chr5_4:13139949-13139968 | Msa0838670:intron | 30.0% | |
| GTGCATATGTATGTCTAAAA+AGG | - | chr5_4:13141257-13141276 | None:intergenic | 30.0% | |
| ! | TGATAGTGTTGTAACAGTGA+AGG | - | chr5_4:13137705-13137724 | None:intergenic | 35.0% |
| CAATTCTTGTACAAAGGGTT+CGG | - | chr5_4:13137788-13137807 | None:intergenic | 35.0% | |
| GGTGACAATTCTTGTACAAA+GGG | - | chr5_4:13137793-13137812 | None:intergenic | 35.0% | |
| AGGTGACAATTCTTGTACAA+AGG | - | chr5_4:13137794-13137813 | None:intergenic | 35.0% | |
| !! | GATTCCTGAGATTAGCTTAT+AGG | - | chr5_4:13137885-13137904 | None:intergenic | 35.0% |
| ATAGACGATACCAAAAACGA+CGG | - | chr5_4:13138023-13138042 | None:intergenic | 35.0% | |
| GCAACCAGTTCTATGATAAA+TGG | - | chr5_4:13138143-13138162 | None:intergenic | 35.0% | |
| !! | AGCTTATTTCTAAGCTCTCT+AGG | - | chr5_4:13138236-13138255 | None:intergenic | 35.0% |
| TAGAAATAAGCTGCAACGTA+TGG | + | chr5_4:13138244-13138263 | Msa0838670:intron | 35.0% | |
| ! | CATAAATGGCCATAATTTGC+TGG | - | chr5_4:13138293-13138312 | None:intergenic | 35.0% |
| ACAAATTATTACCGGTGCAT+AGG | - | chr5_4:13138391-13138410 | None:intergenic | 35.0% | |
| GACACCAACACAATACATAT+CGG | - | chr5_4:13138471-13138490 | None:intergenic | 35.0% | |
| TGTCAAACACTAATGCATGT+TGG | + | chr5_4:13138487-13138506 | Msa0838670:intron | 35.0% | |
| AGCACTAAACTTGCAATTGA+AGG | - | chr5_4:13138524-13138543 | None:intergenic | 35.0% | |
| !! | AATGAAAGTGGTTTTGCATC+TGG | + | chr5_4:13138727-13138746 | Msa0838670:intron | 35.0% |
| GTTATTCATTCTCACACTCA+AGG | + | chr5_4:13138991-13139010 | Msa0838670:CDS | 35.0% | |
| TGCAATCCAATGTCCTAAAA+TGG | - | chr5_4:13139103-13139122 | None:intergenic | 35.0% | |
| ! | CAAGAGAAGTACAAACAACT+GGG | + | chr5_4:13139121-13139140 | Msa0838670:CDS | 35.0% |
| CTGAAAGCAGCTTAGAAAAA+AGG | - | chr5_4:13139416-13139435 | None:intergenic | 35.0% | |
| !! | TGTTGACTTCGATATGACAT+CGG | + | chr5_4:13139445-13139464 | Msa0838670:intron | 35.0% |
| GGGGAAGTTATTACTAACAA+AGG | - | chr5_4:13139542-13139561 | None:intergenic | 35.0% | |
| ATTCAACTGAAAGAAGGGAT+GGG | - | chr5_4:13139582-13139601 | None:intergenic | 35.0% | |
| GCAAACATTCAACTGAAAGA+AGG | - | chr5_4:13139588-13139607 | None:intergenic | 35.0% | |
| AATTGTAAGATCAGTCAAGC+AGG | + | chr5_4:13139657-13139676 | Msa0838670:intron | 35.0% | |
| AAATCCTCAATAAAATGCCG+GGG | - | chr5_4:13139894-13139913 | None:intergenic | 35.0% | |
| ! | CGGCATTTTATTGAGGATTT+TGG | + | chr5_4:13139894-13139913 | Msa0838670:intron | 35.0% |
| GTGATGACATTATACAAGTC+AGG | - | chr5_4:13139948-13139967 | None:intergenic | 35.0% | |
| GGCGATGAATAAAATTCTGT+AGG | - | chr5_4:13140014-13140033 | None:intergenic | 35.0% | |
| GCTAACTAACTGCTACATAA+TGG | - | chr5_4:13140035-13140054 | None:intergenic | 35.0% | |
| ! | ATGTAGCAGTTAGTTAGCTT+TGG | + | chr5_4:13140037-13140056 | Msa0838670:intron | 35.0% |
| TCCTATCAGAGATTGAAGTT+AGG | + | chr5_4:13140069-13140088 | Msa0838670:intron | 35.0% | |
| ACCTAACTTCAATCTCTGAT+AGG | - | chr5_4:13140073-13140092 | None:intergenic | 35.0% | |
| GTAATCTCGGTTGCAAAATA+TGG | - | chr5_4:13140177-13140196 | None:intergenic | 35.0% | |
| TTGCTAGAGAAAAAGCAAAG+GGG | - | chr5_4:13140212-13140231 | None:intergenic | 35.0% | |
| CTTGCTAGAGAAAAAGCAAA+GGG | - | chr5_4:13140213-13140232 | None:intergenic | 35.0% | |
| ! | AGCAAGGTATTTGCATTCAA+TGG | + | chr5_4:13140227-13140246 | Msa0838670:CDS | 35.0% |
| ! | GCAAGGTATTTGCATTCAAT+GGG | + | chr5_4:13140228-13140247 | Msa0838670:CDS | 35.0% |
| TCAATGGGAGCTAAAATGTA+TGG | + | chr5_4:13140243-13140262 | Msa0838670:CDS | 35.0% | |
| CTAAAATGTATGGAGCTTTC+TGG | + | chr5_4:13140253-13140272 | Msa0838670:CDS | 35.0% | |
| TAACAAACAGGCACTTAGTA+AGG | - | chr5_4:13140343-13140362 | None:intergenic | 35.0% | |
| ! | TAAGTGCCTGTTTGTTAACA+CGG | + | chr5_4:13140346-13140365 | Msa0838670:intron | 35.0% |
| ! | TTGTAGAGTTGGTCAAAACT+CGG | - | chr5_4:13140388-13140407 | None:intergenic | 35.0% |
| GAAGCTTGAAATTGTAGAGT+TGG | - | chr5_4:13140399-13140418 | None:intergenic | 35.0% | |
| AAGCTTCTTAAAATCACGGT+GGG | + | chr5_4:13140412-13140431 | Msa0838670:intron | 35.0% | |
| TAAACCAAACACATGCTAAG+TGG | + | chr5_4:13140471-13140490 | Msa0838670:intron | 35.0% | |
| GATATTGCCTTGGTTTCAAT+TGG | + | chr5_4:13140652-13140671 | Msa0838670:intron | 35.0% | |
| TACGAATCCAATTGAAACCA+AGG | - | chr5_4:13140662-13140681 | None:intergenic | 35.0% | |
| AACTTCTCGATACAGATGTT+TGG | + | chr5_4:13140856-13140875 | Msa0838670:intron | 35.0% | |
| TGCTTAGACGCTAAAATTGA+AGG | + | chr5_4:13140958-13140977 | Msa0838670:CDS | 35.0% | |
| ! | TTCCCCACATGGATTATTAA+TGG | + | chr5_4:13140982-13141001 | Msa0838670:CDS | 35.0% |
| TGGCCATTAATAATCCATGT+GGG | - | chr5_4:13140988-13141007 | None:intergenic | 35.0% | |
| AACACAAGACATTCTTTACC+TGG | - | chr5_4:13141008-13141027 | None:intergenic | 35.0% | |
| AATTTGTGAGAAGAGAAGAG+AGG | - | chr5_4:13141049-13141068 | None:intergenic | 35.0% | |
| ATTACATTTGCATCTCCTTC+AGG | + | chr5_4:13141081-13141100 | Msa0838670:intron | 35.0% | |
| TAACATTCCTCTTGATACAG+AGG | + | chr5_4:13141323-13141342 | Msa0838670:three_prime_UTR | 35.0% | |
| TAGTGTTGTAACAGTGAAGG+TGG | - | chr5_4:13137702-13137721 | None:intergenic | 40.0% | |
| ACAAGAATTGTCACCTTCAG+AGG | + | chr5_4:13137798-13137817 | Msa0838670:CDS | 40.0% | |
| GAAATGCTCCTCTTCATCTT+CGG | + | chr5_4:13137832-13137851 | Msa0838670:CDS | 40.0% | |
| CTTATAGGTCCAATCAGTTG+AGG | - | chr5_4:13137870-13137889 | None:intergenic | 40.0% | |
| TGGACCTATAAGCTAATCTC+AGG | + | chr5_4:13137878-13137897 | Msa0838670:CDS | 40.0% | |
| CTTGCTTACCTTAAGTTCAC+CGG | + | chr5_4:13137935-13137954 | Msa0838670:CDS | 40.0% | |
| ! | ATACATATCGGTGTCTGACA+CGG | - | chr5_4:13138459-13138478 | None:intergenic | 40.0% |
| GACACCGATATGTATTGTGT+TGG | + | chr5_4:13138464-13138483 | Msa0838670:intron | 40.0% | |
| ATTGCAAGTTTAGTGCTACG+TGG | + | chr5_4:13138527-13138546 | Msa0838670:intron | 40.0% | |
| ! | ACACAGTGTTGAGTTGTGAT+TGG | + | chr5_4:13138602-13138621 | Msa0838670:intron | 40.0% |
| GTGTACCTCTTCCTTTGATT+GGG | + | chr5_4:13138753-13138772 | Msa0838670:CDS | 40.0% | |
| TTGGATCTGTTAACCCCAAA+AGG | - | chr5_4:13138839-13138858 | None:intergenic | 40.0% | |
| CAATAGGAGCAAGATGATTC+AGG | - | chr5_4:13138944-13138963 | None:intergenic | 40.0% | |
| TTGCTCCTATTGCCTACTTT+CGG | + | chr5_4:13138952-13138971 | Msa0838670:CDS | 40.0% | |
| AATTACGCAGCGACACAAAA+AGG | - | chr5_4:13139061-13139080 | None:intergenic | 40.0% | |
| ! | GCAAGAGAAGTACAAACAAC+TGG | + | chr5_4:13139120-13139139 | Msa0838670:CDS | 40.0% |
| GCAGTTGTTTATTGCTAGCT+TGG | + | chr5_4:13139147-13139166 | Msa0838670:CDS | 40.0% | |
| AGAATTAGCACTGCTATAGG+AGG | - | chr5_4:13139191-13139210 | None:intergenic | 40.0% | |
| GGTAGAATTAGCACTGCTAT+AGG | - | chr5_4:13139194-13139213 | None:intergenic | 40.0% | |
| ACATTCAGGCTTATAGCTCA+TGG | + | chr5_4:13139367-13139386 | Msa0838670:intron | 40.0% | |
| TGAAAGAAGGGATGGGATAA+GGG | - | chr5_4:13139575-13139594 | None:intergenic | 40.0% | |
| CATTCAACTGAAAGAAGGGA+TGG | - | chr5_4:13139583-13139602 | None:intergenic | 40.0% | |
| TATGCTTAACACGGTGAGTT+CGG | - | chr5_4:13139616-13139635 | None:intergenic | 40.0% | |
| ATGTTGTCAAATAGTGGCGA+TGG | + | chr5_4:13139798-13139817 | Msa0838670:intron | 40.0% | |
| CAAAATTTGGTCATAGGCGT+TGG | - | chr5_4:13139858-13139877 | None:intergenic | 40.0% | |
| ! | CGCCTATGACCAAATTTTGA+AGG | + | chr5_4:13139859-13139878 | Msa0838670:intron | 40.0% |
| TGCTGCCATCCTTCAAAATT+TGG | - | chr5_4:13139871-13139890 | None:intergenic | 40.0% | |
| CAAGTCAGGGTTATTGATAG+AGG | - | chr5_4:13139934-13139953 | None:intergenic | 40.0% | |
| TGATGTCTACTTTAGCAGCA+TGG | + | chr5_4:13140137-13140156 | Msa0838670:intron | 40.0% | |
| GCTTGATGGAGTTGTAATCT+CGG | - | chr5_4:13140190-13140209 | None:intergenic | 40.0% | |
| CCTTGCTAGAGAAAAAGCAA+AGG | - | chr5_4:13140214-13140233 | None:intergenic | 40.0% | |
| !!! | CCTTTGCTTTTTCTCTAGCA+AGG | + | chr5_4:13140211-13140230 | Msa0838670:CDS | 40.0% |
| ! | ACACTGTCTGGAACAAAAAG+AGG | + | chr5_4:13140281-13140300 | Msa0838670:CDS | 40.0% |
| CAAGCTTCTTAAAATCACGG+TGG | + | chr5_4:13140411-13140430 | Msa0838670:intron | 40.0% | |
| TGTTCCACTTAGCATGTGTT+TGG | - | chr5_4:13140478-13140497 | None:intergenic | 40.0% | |
| AAAAAGGACTCACTCTCTCA+TGG | + | chr5_4:13140615-13140634 | Msa0838670:intron | 40.0% | |
| ATTCCTCTGCTATAGCCTAT+AGG | + | chr5_4:13140736-13140755 | Msa0838670:intron | 40.0% | |
| CTCTACTGTGATATGCCTAT+AGG | - | chr5_4:13140754-13140773 | None:intergenic | 40.0% | |
| ! | TACGTGGAATGTTTTCCTGA+CGG | + | chr5_4:13140904-13140923 | Msa0838670:CDS | 40.0% |
| AAATTGAAGGTTTCCCCACA+TGG | + | chr5_4:13140971-13140990 | Msa0838670:CDS | 40.0% | |
| GGCCATTAATAATCCATGTG+GGG | - | chr5_4:13140987-13141006 | None:intergenic | 40.0% | |
| CTGGCCATTAATAATCCATG+TGG | - | chr5_4:13140989-13141008 | None:intergenic | 40.0% | |
| ! | CACATGGATTATTAATGGCC+AGG | + | chr5_4:13140987-13141006 | Msa0838670:CDS | 40.0% |
| GAGTGGTGAAGTGGAATTAT+CGG | + | chr5_4:13141108-13141127 | Msa0838670:CDS | 40.0% | |
| TGAAGTGGAATTATCGGAGT+TGG | + | chr5_4:13141114-13141133 | Msa0838670:CDS | 40.0% | |
| TTCCTCTTGATACAGAGGTT+TGG | + | chr5_4:13141328-13141347 | Msa0838670:three_prime_UTR | 40.0% | |
| TGAAGGTGGCCATTGAGAAT+TGG | - | chr5_4:13137688-13137707 | None:intergenic | 45.0% | |
| GGAGAACGGTTTAAACGAAC+CGG | - | chr5_4:13137752-13137771 | None:intergenic | 45.0% | |
| ! | TTGTACAAAGGGTTCGGTCT+GGG | - | chr5_4:13137782-13137801 | None:intergenic | 45.0% |
| !! | GATGAAGAGGAGCATTTCAG+AGG | - | chr5_4:13137830-13137849 | None:intergenic | 45.0% |
| !! | TTCTGGTTCCGAAGATGAAG+AGG | - | chr5_4:13137843-13137862 | None:intergenic | 45.0% |
| CAATCAGTTGAGGAGGTTTC+TGG | - | chr5_4:13137860-13137879 | None:intergenic | 45.0% | |
| CAGAAACCTCCTCAACTGAT+TGG | + | chr5_4:13137858-13137877 | Msa0838670:CDS | 45.0% | |
| ATAGGTCCAATCAGTTGAGG+AGG | - | chr5_4:13137867-13137886 | None:intergenic | 45.0% | |
| AAGCTAATCTCAGGAATCGC+CGG | + | chr5_4:13137887-13137906 | Msa0838670:CDS | 45.0% | |
| GGTTTCGATGAATCCGATTC+CGG | - | chr5_4:13137909-13137928 | None:intergenic | 45.0% | |
| CTTAAGGTAAGCAAGGTACG+AGG | - | chr5_4:13137930-13137949 | None:intergenic | 45.0% | |
| CGGTGAACTTAAGGTAAGCA+AGG | - | chr5_4:13137937-13137956 | None:intergenic | 45.0% | |
| !! | AGTGATTACGCCGTCGTTTT+TGG | + | chr5_4:13138010-13138029 | Msa0838670:CDS | 45.0% |
| TAAGCTGCAACGTATGGACT+CGG | + | chr5_4:13138250-13138269 | Msa0838670:intron | 45.0% | |
| TAGCCACTCCCAGCAAATTA+TGG | + | chr5_4:13138281-13138300 | Msa0838670:intron | 45.0% | |
| ! | TACATATCGGTGTCTGACAC+GGG | - | chr5_4:13138458-13138477 | None:intergenic | 45.0% |
| !! | AAAGTGGTTTTGCATCTGGC+AGG | + | chr5_4:13138731-13138750 | Msa0838670:intron | 45.0% |
| GGTGTACCTCTTCCTTTGAT+TGG | + | chr5_4:13138752-13138771 | Msa0838670:intron | 45.0% | |
| ACCTCTTCCTTTGATTGGGA+TGG | + | chr5_4:13138757-13138776 | Msa0838670:CDS | 45.0% | |
| AGATGATTCAGGAAACGCTG+TGG | - | chr5_4:13138933-13138952 | None:intergenic | 45.0% | |
| GAGAACCGAAAGTAGGCAAT+AGG | - | chr5_4:13138960-13138979 | None:intergenic | 45.0% | |
| AGGACAAGAGAACCGAAAGT+AGG | - | chr5_4:13138967-13138986 | None:intergenic | 45.0% | |
| GCAGTGCTAATTCTACCTCA+AGG | + | chr5_4:13139197-13139216 | Msa0838670:CDS | 45.0% | |
| GGATAAGGGAGTAAGCAAAG+GGG | - | chr5_4:13139561-13139580 | None:intergenic | 45.0% | |
| GGGATAAGGGAGTAAGCAAA+GGG | - | chr5_4:13139562-13139581 | None:intergenic | 45.0% | |
| TGGGATAAGGGAGTAAGCAA+AGG | - | chr5_4:13139563-13139582 | None:intergenic | 45.0% | |
| CTGAAAGAAGGGATGGGATA+AGG | - | chr5_4:13139576-13139595 | None:intergenic | 45.0% | |
| CTTACAATTCTCGACTCAGC+AGG | - | chr5_4:13139646-13139665 | None:intergenic | 45.0% | |
| !!! | AGGATTTTGGCTTTCTGCCA+CGG | + | chr5_4:13139907-13139926 | Msa0838670:intron | 45.0% |
| GAAAAAGCAAAGGGGCTTGA+TGG | - | chr5_4:13140204-13140223 | None:intergenic | 45.0% | |
| ! | TTTCTGGTGTTCACACTGTC+TGG | + | chr5_4:13140269-13140288 | Msa0838670:CDS | 45.0% |
| ! | TGCCTGTTTGTTAACACGGT+GGG | + | chr5_4:13140350-13140369 | Msa0838670:intron | 45.0% |
| ATCCCACCGTGTTAACAAAC+AGG | - | chr5_4:13140355-13140374 | None:intergenic | 45.0% | |
| !! | TGGTCAAAACTCGGTTTGGT+GGG | - | chr5_4:13140379-13140398 | None:intergenic | 45.0% |
| !! | TTGGTCAAAACTCGGTTTGG+TGG | - | chr5_4:13140380-13140399 | None:intergenic | 45.0% |
| ! | GAGTTGGTCAAAACTCGGTT+TGG | - | chr5_4:13140383-13140402 | None:intergenic | 45.0% |
| TCCTTGTGAGGATATTGCCT+TGG | + | chr5_4:13140642-13140661 | Msa0838670:intron | 45.0% | |
| ACCAAGGCAATATCCTCACA+AGG | - | chr5_4:13140646-13140665 | None:intergenic | 45.0% | |
| ATGCCTATAGGCTATAGCAG+AGG | - | chr5_4:13140742-13140761 | None:intergenic | 45.0% | |
| GATACAGATGTTTGGACGTG+AGG | + | chr5_4:13140864-13140883 | Msa0838670:intron | 45.0% | |
| ! | TTTCCTGACGGATATCGAAC+AGG | + | chr5_4:13140916-13140935 | Msa0838670:CDS | 45.0% |
| GTCCAAACCTCTGTATCAAG+AGG | - | chr5_4:13141333-13141352 | None:intergenic | 45.0% | |
| GCGAAGAAACGAGAAGAGGA+AGG | - | chr5_4:13137728-13137747 | None:intergenic | 50.0% | |
| CTCTTCTCGTTTCTTCGCAC+CGG | + | chr5_4:13137730-13137749 | Msa0838670:CDS | 50.0% | |
| ! | CTTGTACAAAGGGTTCGGTC+TGG | - | chr5_4:13137783-13137802 | None:intergenic | 50.0% |
| TCAGAGGTGGAAACCTCTGA+AGG | - | chr5_4:13137814-13137833 | None:intergenic | 50.0% | |
| !! | GAAGAGGAGCATTTCAGAGG+TGG | - | chr5_4:13137827-13137846 | None:intergenic | 50.0% |
| ATCTCAGGAATCGCCGGAAT+CGG | + | chr5_4:13137893-13137912 | Msa0838670:CDS | 50.0% | |
| ! | CAACGTATGGACTCGGTATC+TGG | + | chr5_4:13138257-13138276 | Msa0838670:intron | 50.0% |
| !! | TGGCCATAATTTGCTGGGAG+TGG | - | chr5_4:13138287-13138306 | None:intergenic | 50.0% |
| GCCATCCCAATCAAAGGAAG+AGG | - | chr5_4:13138761-13138780 | None:intergenic | 50.0% | |
| TACGCAGCCATCCCAATCAA+AGG | - | chr5_4:13138767-13138786 | None:intergenic | 50.0% | |
| ! | GCTTGGAAGCACAACCTCAA+TGG | + | chr5_4:13138874-13138893 | Msa0838670:CDS | 50.0% |
| AGCACTAGCAGTTGCCATTG+AGG | - | chr5_4:13138891-13138910 | None:intergenic | 50.0% | |
| TCTGTCACCACAATCAGCCA+TGG | - | chr5_4:13139828-13139847 | None:intergenic | 50.0% | |
| ! | AGCACCCCGGCATTTTATTG+AGG | + | chr5_4:13139887-13139906 | Msa0838670:intron | 50.0% |
| GGGTTATTGATAGAGGACCG+TGG | - | chr5_4:13139927-13139946 | None:intergenic | 50.0% | |
| ! | GTGCCTGTTTGTTAACACGG+TGG | + | chr5_4:13140349-13140368 | Msa0838670:intron | 50.0% |
| AATCACGGTGGGATGTGCAT+TGG | + | chr5_4:13140423-13140442 | Msa0838670:intron | 50.0% | |
| ATCACGGTGGGATGTGCATT+GGG | + | chr5_4:13140424-13140443 | Msa0838670:intron | 50.0% | |
| TCTCATGGCTACTCCTTGTG+AGG | + | chr5_4:13140630-13140649 | Msa0838670:intron | 50.0% | |
| ACAGATGTTTGGACGTGAGG+CGG | + | chr5_4:13140867-13140886 | Msa0838670:intron | 50.0% | |
| GGCGAAGCAATTGGATTACG+TGG | + | chr5_4:13140888-13140907 | Msa0838670:CDS | 50.0% | |
| GTTCCTGTTCGATATCCGTC+AGG | - | chr5_4:13140922-13140941 | None:intergenic | 50.0% | |
| !! | CATCTCCTTCAGGTTCTGAG+TGG | + | chr5_4:13141091-13141110 | Msa0838670:intron | 50.0% |
| CTTCACCACTCAGAACCTGA+AGG | - | chr5_4:13141099-13141118 | None:intergenic | 50.0% | |
| !! | TCAGGTTCTGAGTGGTGAAG+TGG | + | chr5_4:13141099-13141118 | Msa0838670:intron | 50.0% |
| CGGTGCGAAGAAACGAGAAG+AGG | - | chr5_4:13137732-13137751 | None:intergenic | 55.0% | |
| !! | GTCTGGGTTGGTTCGGAGAA+CGG | - | chr5_4:13137766-13137785 | None:intergenic | 55.0% |
| ! | ACAAAGGGTTCGGTCTGGGT+TGG | - | chr5_4:13137778-13137797 | None:intergenic | 55.0% |
| CATCGGAGCCGGTGAACTTA+AGG | - | chr5_4:13137946-13137965 | None:intergenic | 55.0% | |
| TCCGATGTCTTCTGCCCTGT+CGG | + | chr5_4:13137959-13137978 | Msa0838670:CDS | 55.0% | |
| ATGACGCAACGCCTATGCAC+CGG | + | chr5_4:13138377-13138396 | Msa0838670:intron | 55.0% | |
| TTTGAAGGATGGCAGCACCC+CGG | + | chr5_4:13139874-13139893 | Msa0838670:intron | 55.0% | |
| !! | GGGTTCGGTCTGGGTTGGTT+CGG | - | chr5_4:13137773-13137792 | None:intergenic | 60.0% |
| AGGGCAGAAGACATCGGAGC+CGG | - | chr5_4:13137957-13137976 | None:intergenic | 60.0% | |
| GCCGACAGGGCAGAAGACAT+CGG | - | chr5_4:13137963-13137982 | None:intergenic | 60.0% | |
| GATGTCTTCTGCCCTGTCGG+CGG | + | chr5_4:13137962-13137981 | Msa0838670:CDS | 60.0% | |
| ACGTGAGGCGGCGAAGCAAT+TGG | + | chr5_4:13140879-13140898 | Msa0838670:CDS | 60.0% | |
| TCGGAGTTGGCACAAGCGTC+TGG | + | chr5_4:13141127-13141146 | Msa0838670:CDS | 60.0% | |
| AGCAAGTGCCACCGCCGACA+GGG | - | chr5_4:13137976-13137995 | None:intergenic | 65.0% | |
| ATAGTGGCGATGGCGCGCCA+TGG | + | chr5_4:13139808-13139827 | Msa0838670:intron | 65.0% | |
| TGGCGCGCCATGGCTGATTG+TGG | + | chr5_4:13139818-13139837 | Msa0838670:intron | 65.0% | |
| GTCTTCTGCCCTGTCGGCGG+TGG | + | chr5_4:13137965-13137984 | Msa0838670:CDS | 70.0% | |
| GAGCAAGTGCCACCGCCGAC+AGG | - | chr5_4:13137977-13137996 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 13137655 | 13141393 | 13137655 | ID=Msa0838670;Name=Msa0838670 |
| chr5_4 | mRNA | 13137655 | 13141393 | 13137655 | ID=Msa0838670-mRNA-1;Parent=Msa0838670;Name=Msa0838670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=40|0.8|0.83|1|1|1|6|216|356 |
| chr5_4 | exon | 13137655 | 13138031 | 13137655 | ID=Msa0838670-mRNA-1:exon:5854;Parent=Msa0838670-mRNA-1 |
| chr5_4 | exon | 13138753 | 13139012 | 13138753 | ID=Msa0838670-mRNA-1:exon:5855;Parent=Msa0838670-mRNA-1 |
| chr5_4 | exon | 13139109 | 13139218 | 13139109 | ID=Msa0838670-mRNA-1:exon:5856;Parent=Msa0838670-mRNA-1 |
| chr5_4 | exon | 13140152 | 13140302 | 13140152 | ID=Msa0838670-mRNA-1:exon:5857;Parent=Msa0838670-mRNA-1 |
| chr5_4 | exon | 13140871 | 13141008 | 13140871 | ID=Msa0838670-mRNA-1:exon:5858;Parent=Msa0838670-mRNA-1 |
| chr5_4 | exon | 13141103 | 13141393 | 13141103 | ID=Msa0838670-mRNA-1:exon:5859;Parent=Msa0838670-mRNA-1 |
| chr5_4 | five_prime_UTR | 13137655 | 13137694 | 13137655 | ID=Msa0838670-mRNA-1:five_prime_utr;Parent=Msa0838670-mRNA-1 |
| chr5_4 | CDS | 13137695 | 13138031 | 13137695 | ID=Msa0838670-mRNA-1:cds;Parent=Msa0838670-mRNA-1 |
| chr5_4 | CDS | 13138753 | 13139012 | 13138753 | ID=Msa0838670-mRNA-1:cds;Parent=Msa0838670-mRNA-1 |
| chr5_4 | CDS | 13139109 | 13139218 | 13139109 | ID=Msa0838670-mRNA-1:cds;Parent=Msa0838670-mRNA-1 |
| chr5_4 | CDS | 13140152 | 13140302 | 13140152 | ID=Msa0838670-mRNA-1:cds;Parent=Msa0838670-mRNA-1 |
| chr5_4 | CDS | 13140871 | 13141008 | 13140871 | ID=Msa0838670-mRNA-1:cds;Parent=Msa0838670-mRNA-1 |
| chr5_4 | CDS | 13141103 | 13141177 | 13141103 | ID=Msa0838670-mRNA-1:cds;Parent=Msa0838670-mRNA-1 |
| chr5_4 | three_prime_UTR | 13141178 | 13141393 | 13141178 | ID=Msa0838670-mRNA-1:three_prime_utr;Parent=Msa0838670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
