Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859250 | XP_003616748.1 | 97.231 | 325 | 9 | 0 | 1 | 325 | 1 | 325 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859250 | sp|A7NY33|PER4_VITVI | 69.255 | 322 | 98 | 1 | 4 | 325 | 1 | 321 | 5.32e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859250 | G7KH18 | 97.231 | 325 | 9 | 0 | 1 | 325 | 1 | 325 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012820 | Msa0859250 | 0.806599 | 7.607136e-50 | -8.615850e-47 |
| Msa0036580 | Msa0859250 | 0.823340 | 1.460315e-53 | -8.615850e-47 |
| Msa0059880 | Msa0859250 | 0.815249 | 1.018333e-51 | -8.615850e-47 |
| Msa0061600 | Msa0859250 | 0.831868 | 1.308064e-55 | -8.615850e-47 |
| Msa0106130 | Msa0859250 | 0.821745 | 3.429464e-53 | -8.615850e-47 |
| Msa0630130 | Msa0859250 | 0.816252 | 6.087254e-52 | -8.615850e-47 |
| Msa0645100 | Msa0859250 | 0.800657 | 1.300395e-48 | -8.615850e-47 |
| Msa0645120 | Msa0859250 | 0.803365 | 3.609540e-49 | -8.615850e-47 |
| Msa0668220 | Msa0859250 | 0.810678 | 1.023113e-50 | -8.615850e-47 |
| Msa0684600 | Msa0859250 | 0.812902 | 3.355085e-51 | -8.615850e-47 |
| Msa0716600 | Msa0859250 | 0.821309 | 4.322866e-53 | -8.615850e-47 |
| Msa0727480 | Msa0859250 | 0.816050 | 6.753650e-52 | -8.615850e-47 |
| Msa0735280 | Msa0859250 | 0.806197 | 9.244088e-50 | -8.615850e-47 |
| Msa0738570 | Msa0859250 | 0.869503 | 2.949858e-66 | -8.615850e-47 |
| Msa0738660 | Msa0859250 | 0.878485 | 2.703938e-69 | -8.615850e-47 |
| Msa0776340 | Msa0859250 | 0.813002 | 3.191217e-51 | -8.615850e-47 |
| Msa0777070 | Msa0859250 | 0.804830 | 1.789098e-49 | -8.615850e-47 |
| Msa0783580 | Msa0859250 | 0.874655 | 5.697321e-68 | -8.615850e-47 |
| Msa0787860 | Msa0859250 | 0.806726 | 7.150139e-50 | -8.615850e-47 |
| Msa0819110 | Msa0859250 | 0.871809 | 5.148769e-67 | -8.615850e-47 |
| Msa0139270 | Msa0859250 | 0.826418 | 2.743417e-54 | -8.615850e-47 |
| Msa0139460 | Msa0859250 | 0.803899 | 2.796150e-49 | -8.615850e-47 |
| Msa0150910 | Msa0859250 | 0.814600 | 1.418604e-51 | -8.615850e-47 |
| Msa0176620 | Msa0859250 | 0.841435 | 4.760874e-58 | -8.615850e-47 |
| Msa0195190 | Msa0859250 | 0.803985 | 2.683492e-49 | -8.615850e-47 |
| Msa0197750 | Msa0859250 | 0.807228 | 5.601398e-50 | -8.615850e-47 |
| Msa0199860 | Msa0859250 | 0.805576 | 1.248904e-49 | -8.615850e-47 |
| Msa0207930 | Msa0859250 | 0.857346 | 1.737783e-62 | -8.615850e-47 |
| Msa0207970 | Msa0859250 | 0.801332 | 9.464632e-49 | -8.615850e-47 |
| Msa0212550 | Msa0859250 | 0.829337 | 5.447798e-55 | -8.615850e-47 |
| Msa0225910 | Msa0859250 | 0.806613 | 7.555411e-50 | -8.615850e-47 |
| Msa0227290 | Msa0859250 | -0.800672 | 1.291103e-48 | -8.615850e-47 |
| Msa0398690 | Msa0859250 | 0.802256 | 6.114928e-49 | -8.615850e-47 |
| Msa0476420 | Msa0859250 | 0.800940 | 1.138419e-48 | -8.615850e-47 |
| Msa0242390 | Msa0859250 | 0.800604 | 1.333325e-48 | -8.615850e-47 |
| Msa0252930 | Msa0859250 | 0.804997 | 1.651090e-49 | -8.615850e-47 |
| Msa0257930 | Msa0859250 | 0.808470 | 3.049020e-50 | -8.615850e-47 |
| Msa0266640 | Msa0859250 | 0.807252 | 5.536130e-50 | -8.615850e-47 |
| Msa0266650 | Msa0859250 | 0.804527 | 2.069837e-49 | -8.615850e-47 |
| Msa0278950 | Msa0859250 | 0.805654 | 1.202661e-49 | -8.615850e-47 |
| Msa0318370 | Msa0859250 | 0.814255 | 1.691338e-51 | -8.615850e-47 |
| Msa0520430 | Msa0859250 | 0.803217 | 3.874044e-49 | -8.615850e-47 |
| Msa0533510 | Msa0859250 | 0.806107 | 9.660358e-50 | -8.615850e-47 |
| Msa0533520 | Msa0859250 | 0.805990 | 1.021963e-49 | -8.615850e-47 |
| Msa0538450 | Msa0859250 | 0.801756 | 7.748363e-49 | -8.615850e-47 |
| Msa0548760 | Msa0859250 | 0.826404 | 2.763915e-54 | -8.615850e-47 |
| Msa0589730 | Msa0859250 | 0.818835 | 1.592982e-52 | -8.615850e-47 |
| Msa0594330 | Msa0859250 | 0.813281 | 2.771143e-51 | -8.615850e-47 |
| Msa0854840 | Msa0859250 | 0.811442 | 6.986452e-51 | -8.615850e-47 |
| Msa0859230 | Msa0859250 | 0.905057 | 6.411807e-80 | -8.615850e-47 |
| Msa0859250 | Msa0864160 | 0.801711 | 7.916366e-49 | -8.615850e-47 |
| Msa0859250 | Msa0883610 | 0.810773 | 9.757204e-51 | -8.615850e-47 |
| Msa0859250 | Msa0883640 | 0.824385 | 8.304394e-54 | -8.615850e-47 |
| Msa0859250 | Msa0902340 | 0.832834 | 7.539932e-56 | -8.615850e-47 |
| Msa0859250 | Msa0910570 | 0.829056 | 6.372715e-55 | -8.615850e-47 |
| Msa0859250 | Msa0910830 | 0.825692 | 4.080125e-54 | -8.615850e-47 |
| Msa0859250 | Msa0932930 | 0.801400 | 9.167517e-49 | -8.615850e-47 |
| Msa0859250 | Msa0948460 | 0.819285 | 1.258701e-52 | -8.615850e-47 |
| Msa0859250 | Msa0951060 | 0.832177 | 1.097140e-55 | -8.615850e-47 |
| Msa0859250 | Msa0960090 | 0.825512 | 4.501349e-54 | -8.615850e-47 |
| Msa0859250 | Msa0967820 | 0.804705 | 1.899869e-49 | -8.615850e-47 |
| Msa0859250 | Msa0985250 | 0.836199 | 1.076353e-56 | -8.615850e-47 |
| Msa0859250 | Msa0985290 | 0.830193 | 3.370474e-55 | -8.615850e-47 |
| Msa0859250 | Msa0985700 | 0.823970 | 1.039564e-53 | -8.615850e-47 |
| Msa0859250 | Msa1006170 | 0.814964 | 1.177972e-51 | -8.615850e-47 |
| Msa0859250 | Msa1024350 | 0.823841 | 1.114555e-53 | -8.615850e-47 |
| Msa0859250 | Msa1040330 | 0.809689 | 1.670987e-50 | -8.615850e-47 |
| Msa0859250 | Msa1064930 | 0.803604 | 3.219617e-49 | -8.615850e-47 |
| Msa0859250 | Msa1064940 | 0.800899 | 1.160380e-48 | -8.615850e-47 |
| Msa0859250 | Msa1083100 | 0.825996 | 3.455902e-54 | -8.615850e-47 |
| Msa0859250 | Msa1109890 | 0.814266 | 1.681660e-51 | -8.615850e-47 |
| Msa0859250 | Msa1110040 | 0.804757 | 1.853113e-49 | -8.615850e-47 |
| Msa0859250 | Msa1127940 | 0.827286 | 1.701182e-54 | -8.615850e-47 |
| Msa0859250 | Msa1151070 | 0.800699 | 1.275206e-48 | -8.615850e-47 |
| Msa0859250 | Msa1165860 | 0.827604 | 1.427607e-54 | -8.615850e-47 |
| Msa0859250 | Msa1216600 | 0.801956 | 7.050583e-49 | -8.615850e-47 |
| Msa0859250 | Msa1221570 | 0.810853 | 9.376251e-51 | -8.615850e-47 |
| Msa0859250 | Msa1296870 | 0.812924 | 3.318966e-51 | -8.615850e-47 |
| Msa0859250 | Msa1323030 | 0.810501 | 1.117167e-50 | -8.615850e-47 |
| Msa0859250 | Msa1373560 | 0.817550 | 3.110940e-52 | -8.615850e-47 |
| Msa0859250 | Msa1395690 | 0.844101 | 9.310268e-59 | -8.615850e-47 |
| Msa0859250 | Msa1418190 | 0.800963 | 1.126171e-48 | -8.615850e-47 |
| Msa0859250 | Msa1426420 | 0.803152 | 3.994547e-49 | -8.615850e-47 |
| Msa0859250 | Msa1448150 | 0.803259 | 3.797044e-49 | -8.615850e-47 |
| Msa0859250 | Msa1459610 | 0.800583 | 1.346615e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859250 | MtrunA17_Chr5g0438021 | 97.231 | 325 | 9 | 0 | 1 | 325 | 1 | 325 | 0.0 | 645 |
| Msa0859250 | MtrunA17_Chr3g0129061 | 78.505 | 321 | 65 | 2 | 5 | 325 | 6 | 322 | 2.53e-177 | 493 |
| Msa0859250 | MtrunA17_Chr3g0129051 | 73.832 | 321 | 80 | 2 | 5 | 325 | 6 | 322 | 7.46e-168 | 469 |
| Msa0859250 | MtrunA17_Chr3g0129041 | 76.012 | 321 | 73 | 2 | 5 | 325 | 6 | 322 | 1.13e-166 | 466 |
| Msa0859250 | MtrunA17_Chr3g0106921 | 68.608 | 309 | 96 | 1 | 18 | 325 | 12 | 320 | 1.40e-158 | 446 |
| Msa0859250 | MtrunA17_Chr5g0432441 | 63.665 | 322 | 115 | 2 | 6 | 325 | 5 | 326 | 6.80e-147 | 416 |
| Msa0859250 | MtrunA17_Chr2g0320071 | 61.465 | 314 | 118 | 2 | 12 | 325 | 7 | 317 | 1.32e-137 | 392 |
| Msa0859250 | MtrunA17_Chr3g0114451 | 61.250 | 320 | 120 | 2 | 8 | 325 | 1 | 318 | 6.05e-135 | 385 |
| Msa0859250 | MtrunA17_Chr2g0320101 | 58.462 | 325 | 127 | 3 | 1 | 325 | 1 | 317 | 3.52e-133 | 381 |
| Msa0859250 | MtrunA17_Chr4g0038151 | 61.812 | 309 | 116 | 2 | 19 | 325 | 13 | 321 | 1.58e-132 | 380 |
| Msa0859250 | MtrunA17_Chr2g0320061 | 60.317 | 315 | 121 | 4 | 12 | 325 | 7 | 318 | 1.74e-132 | 379 |
| Msa0859250 | MtrunA17_Chr7g0244461 | 59.283 | 307 | 123 | 1 | 19 | 325 | 8 | 312 | 1.18e-131 | 377 |
| Msa0859250 | MtrunA17_Chr4g0043391 | 59.006 | 322 | 129 | 3 | 7 | 325 | 3 | 324 | 1.60e-131 | 377 |
| Msa0859250 | MtrunA17_Chr2g0320091 | 58.462 | 325 | 128 | 3 | 1 | 325 | 1 | 318 | 1.61e-131 | 377 |
| Msa0859250 | MtrunA17_Chr2g0320051 | 59.048 | 315 | 125 | 3 | 12 | 325 | 7 | 318 | 2.37e-131 | 377 |
| Msa0859250 | MtrunA17_Chr4g0038161 | 60.256 | 312 | 120 | 3 | 16 | 325 | 11 | 320 | 1.98e-130 | 374 |
| Msa0859250 | MtrunA17_Chr4g0038171 | 60.577 | 312 | 118 | 4 | 17 | 325 | 12 | 321 | 1.88e-129 | 372 |
| Msa0859250 | MtrunA17_Chr7g0244451 | 58.766 | 308 | 125 | 1 | 18 | 325 | 11 | 316 | 1.03e-127 | 367 |
| Msa0859250 | MtrunA17_Chr3g0106901 | 60.317 | 315 | 122 | 2 | 11 | 325 | 12 | 323 | 5.65e-127 | 365 |
| Msa0859250 | MtrunA17_Chr4g0013171 | 57.827 | 313 | 127 | 4 | 16 | 325 | 11 | 321 | 5.70e-126 | 363 |
| Msa0859250 | MtrunA17_Chr2g0320031 | 56.190 | 315 | 135 | 3 | 12 | 325 | 7 | 319 | 2.48e-125 | 361 |
| Msa0859250 | MtrunA17_Chr4g0013181 | 58.844 | 294 | 117 | 3 | 34 | 325 | 62 | 353 | 1.07e-120 | 351 |
| Msa0859250 | MtrunA17_Chr5g0432331 | 56.442 | 326 | 133 | 7 | 6 | 325 | 30 | 352 | 8.21e-120 | 348 |
| Msa0859250 | MtrunA17_Chr5g0432351 | 55.247 | 324 | 136 | 7 | 8 | 325 | 1 | 321 | 1.28e-117 | 342 |
| Msa0859250 | MtrunA17_Chr5g0432341 | 55.247 | 324 | 136 | 7 | 8 | 325 | 1 | 321 | 1.41e-116 | 339 |
| Msa0859250 | MtrunA17_Chr4g0013201 | 52.050 | 317 | 149 | 2 | 10 | 325 | 24 | 338 | 6.85e-116 | 338 |
| Msa0859250 | MtrunA17_Chr4g0013191 | 54.296 | 291 | 133 | 0 | 35 | 325 | 50 | 340 | 2.51e-115 | 337 |
| Msa0859250 | MtrunA17_Chr7g0224371 | 52.778 | 324 | 145 | 5 | 7 | 325 | 2 | 322 | 2.10e-114 | 334 |
| Msa0859250 | MtrunA17_Chr1g0213061 | 54.487 | 312 | 135 | 5 | 18 | 325 | 13 | 321 | 1.07e-111 | 327 |
| Msa0859250 | MtrunA17_Chr5g0404721 | 52.475 | 303 | 134 | 3 | 31 | 325 | 30 | 330 | 1.07e-110 | 325 |
| Msa0859250 | MtrunA17_Chr3g0107881 | 53.618 | 304 | 134 | 5 | 27 | 325 | 23 | 324 | 1.50e-108 | 319 |
| Msa0859250 | MtrunA17_Chr8g0372601 | 52.145 | 303 | 135 | 3 | 31 | 325 | 30 | 330 | 8.90e-106 | 312 |
| Msa0859250 | MtrunA17_Chr4g0068621 | 47.761 | 335 | 159 | 3 | 7 | 325 | 2 | 336 | 1.92e-104 | 309 |
| Msa0859250 | MtrunA17_Chr7g0258811 | 48.438 | 320 | 153 | 5 | 16 | 325 | 54 | 371 | 2.07e-103 | 308 |
| Msa0859250 | MtrunA17_Chr2g0299691 | 50.307 | 326 | 143 | 6 | 15 | 325 | 37 | 358 | 4.83e-103 | 306 |
| Msa0859250 | MtrunA17_Chr5g0402571 | 47.866 | 328 | 160 | 4 | 5 | 325 | 3 | 326 | 3.53e-100 | 298 |
| Msa0859250 | MtrunA17_Chr1g0175561 | 47.879 | 330 | 155 | 6 | 7 | 325 | 3 | 326 | 1.55e-99 | 296 |
| Msa0859250 | MtrunA17_Chr5g0402581 | 47.561 | 328 | 161 | 4 | 5 | 325 | 3 | 326 | 1.89e-99 | 296 |
| Msa0859250 | MtrunA17_Chr4g0070951 | 50.804 | 311 | 138 | 5 | 26 | 325 | 23 | 329 | 3.11e-99 | 295 |
| Msa0859250 | MtrunA17_Chr5g0400331 | 51.299 | 308 | 135 | 3 | 31 | 325 | 26 | 331 | 1.16e-98 | 294 |
| Msa0859250 | MtrunA17_Chr1g0155611 | 49.342 | 304 | 143 | 3 | 31 | 325 | 46 | 347 | 1.94e-97 | 291 |
| Msa0859250 | MtrunA17_Chr2g0292181 | 47.164 | 335 | 162 | 5 | 1 | 325 | 10 | 339 | 1.90e-96 | 290 |
| Msa0859250 | MtrunA17_Chr2g0292271 | 47.826 | 322 | 154 | 4 | 16 | 325 | 11 | 330 | 4.57e-96 | 288 |
| Msa0859250 | MtrunA17_Chr2g0292151 | 48.867 | 309 | 147 | 4 | 26 | 325 | 24 | 330 | 6.25e-96 | 288 |
| Msa0859250 | MtrunA17_Chr5g0432401 | 49.846 | 325 | 115 | 8 | 6 | 324 | 3 | 285 | 2.50e-95 | 284 |
| Msa0859250 | MtrunA17_Chr2g0292091 | 46.440 | 323 | 160 | 5 | 12 | 325 | 7 | 325 | 1.28e-94 | 284 |
| Msa0859250 | MtrunA17_Chr2g0292211 | 47.403 | 308 | 151 | 3 | 27 | 325 | 36 | 341 | 4.13e-93 | 281 |
| Msa0859250 | MtrunA17_Chr2g0291751 | 46.108 | 334 | 167 | 5 | 1 | 325 | 1 | 330 | 7.03e-93 | 280 |
| Msa0859250 | MtrunA17_Chr2g0292101 | 46.130 | 323 | 163 | 3 | 12 | 325 | 6 | 326 | 2.65e-92 | 278 |
| Msa0859250 | MtrunA17_Chr2g0292241 | 45.370 | 324 | 165 | 4 | 12 | 325 | 9 | 330 | 9.94e-92 | 277 |
| Msa0859250 | MtrunA17_Chr2g0292111 | 46.602 | 309 | 154 | 4 | 26 | 325 | 24 | 330 | 7.40e-91 | 275 |
| Msa0859250 | MtrunA17_Chr4g0013821 | 45.625 | 320 | 162 | 4 | 13 | 325 | 10 | 324 | 1.16e-90 | 274 |
| Msa0859250 | MtrunA17_Chr2g0292251 | 45.955 | 309 | 156 | 3 | 26 | 325 | 23 | 329 | 1.40e-90 | 274 |
| Msa0859250 | MtrunA17_Chr4g0013721 | 45.806 | 310 | 156 | 4 | 23 | 325 | 92 | 396 | 2.74e-90 | 275 |
| Msa0859250 | MtrunA17_Chr2g0292261 | 44.478 | 335 | 171 | 5 | 1 | 325 | 1 | 330 | 6.05e-85 | 259 |
| Msa0859250 | MtrunA17_Chr2g0292291 | 42.633 | 319 | 169 | 4 | 20 | 325 | 15 | 332 | 1.12e-84 | 259 |
| Msa0859250 | MtrunA17_Chr6g0477071 | 43.312 | 314 | 164 | 6 | 13 | 325 | 42 | 342 | 9.58e-84 | 256 |
| Msa0859250 | MtrunA17_Chr5g0421411 | 46.154 | 286 | 142 | 4 | 51 | 325 | 1 | 285 | 1.60e-83 | 254 |
| Msa0859250 | MtrunA17_Chr1g0188431 | 42.169 | 332 | 175 | 7 | 4 | 325 | 3 | 327 | 6.11e-82 | 251 |
| Msa0859250 | MtrunA17_Chr7g0225221 | 40.938 | 320 | 180 | 5 | 12 | 325 | 4 | 320 | 9.16e-77 | 238 |
| Msa0859250 | MtrunA17_Chr3g0128061 | 40.187 | 321 | 179 | 4 | 16 | 325 | 8 | 326 | 3.00e-76 | 236 |
| Msa0859250 | MtrunA17_Chr4g0024121 | 40.810 | 321 | 177 | 4 | 12 | 325 | 12 | 326 | 1.79e-75 | 234 |
| Msa0859250 | MtrunA17_Chr1g0157051 | 40.741 | 324 | 178 | 6 | 8 | 324 | 1 | 317 | 6.83e-75 | 233 |
| Msa0859250 | MtrunA17_Chr2g0279041 | 40.615 | 325 | 172 | 7 | 12 | 325 | 11 | 325 | 8.25e-75 | 233 |
| Msa0859250 | MtrunA17_Chr1g0204011 | 40.683 | 322 | 171 | 7 | 12 | 325 | 13 | 322 | 3.32e-74 | 231 |
| Msa0859250 | MtrunA17_Chr4g0063671 | 41.284 | 327 | 172 | 8 | 12 | 325 | 1 | 320 | 1.45e-73 | 229 |
| Msa0859250 | MtrunA17_Chr1g0194151 | 38.788 | 330 | 190 | 3 | 8 | 325 | 4 | 333 | 2.23e-73 | 229 |
| Msa0859250 | MtrunA17_Chr5g0405991 | 40.062 | 322 | 177 | 7 | 12 | 325 | 3 | 316 | 3.19e-73 | 228 |
| Msa0859250 | MtrunA17_Chr2g0322861 | 40.683 | 322 | 173 | 8 | 16 | 325 | 71 | 386 | 5.82e-71 | 225 |
| Msa0859250 | MtrunA17_Chr1g0164891 | 41.528 | 301 | 165 | 4 | 35 | 325 | 93 | 392 | 4.06e-70 | 223 |
| Msa0859250 | MtrunA17_Chr8g0371381 | 40.728 | 302 | 164 | 6 | 31 | 325 | 26 | 319 | 8.16e-70 | 220 |
| Msa0859250 | MtrunA17_Chr1g0194271 | 37.870 | 338 | 189 | 5 | 8 | 325 | 4 | 340 | 2.99e-68 | 216 |
| Msa0859250 | MtrunA17_Chr1g0148021 | 39.329 | 328 | 183 | 7 | 10 | 325 | 5 | 328 | 3.62e-68 | 216 |
| Msa0859250 | MtrunA17_Chr7g0268501 | 38.037 | 326 | 188 | 6 | 8 | 325 | 1 | 320 | 4.46e-68 | 215 |
| Msa0859250 | MtrunA17_Chr7g0268521 | 38.037 | 326 | 188 | 6 | 8 | 325 | 1 | 320 | 4.46e-68 | 215 |
| Msa0859250 | MtrunA17_Chr4g0046131 | 39.934 | 303 | 170 | 5 | 30 | 321 | 41 | 342 | 6.47e-67 | 213 |
| Msa0859250 | MtrunA17_Chr6g0460711 | 37.658 | 316 | 187 | 5 | 12 | 325 | 7 | 314 | 1.79e-66 | 211 |
| Msa0859250 | MtrunA17_Chr3g0114461 | 55.914 | 186 | 79 | 2 | 141 | 325 | 9 | 192 | 2.48e-66 | 206 |
| Msa0859250 | MtrunA17_Chr7g0254201 | 38.000 | 300 | 182 | 3 | 27 | 325 | 16 | 312 | 4.58e-66 | 210 |
| Msa0859250 | MtrunA17_Chr4g0076211 | 39.130 | 299 | 164 | 6 | 35 | 325 | 45 | 333 | 1.36e-65 | 209 |
| Msa0859250 | MtrunA17_Chr2g0278671 | 39.172 | 314 | 172 | 7 | 24 | 325 | 17 | 323 | 3.76e-65 | 208 |
| Msa0859250 | MtrunA17_Chr1g0197411 | 36.308 | 325 | 189 | 7 | 14 | 325 | 11 | 330 | 2.50e-64 | 206 |
| Msa0859250 | MtrunA17_Chr2g0296621 | 40.924 | 303 | 160 | 7 | 31 | 325 | 50 | 341 | 3.18e-64 | 206 |
| Msa0859250 | MtrunA17_Chr7g0254231 | 36.242 | 298 | 183 | 4 | 29 | 325 | 20 | 311 | 7.64e-64 | 204 |
| Msa0859250 | MtrunA17_Chr5g0401431 | 37.003 | 327 | 181 | 6 | 13 | 321 | 6 | 325 | 8.64e-64 | 204 |
| Msa0859250 | MtrunA17_Chr6g0467251 | 36.667 | 330 | 192 | 6 | 7 | 325 | 5 | 328 | 1.12e-63 | 205 |
| Msa0859250 | MtrunA17_Chr4g0072091 | 38.111 | 307 | 171 | 6 | 31 | 325 | 24 | 323 | 1.36e-63 | 204 |
| Msa0859250 | MtrunA17_Chr6g0467161 | 37.463 | 339 | 191 | 7 | 1 | 325 | 5 | 336 | 2.04e-63 | 204 |
| Msa0859250 | MtrunA17_Chr2g0279061 | 43.893 | 262 | 129 | 6 | 75 | 325 | 12 | 266 | 5.88e-63 | 201 |
| Msa0859250 | MtrunA17_Chr4g0075241 | 33.981 | 309 | 198 | 2 | 22 | 325 | 20 | 327 | 8.30e-63 | 202 |
| Msa0859250 | MtrunA17_Chr2g0316791 | 36.364 | 330 | 172 | 6 | 29 | 321 | 74 | 402 | 1.22e-62 | 204 |
| Msa0859250 | MtrunA17_Chr2g0316191 | 36.556 | 331 | 171 | 6 | 29 | 321 | 74 | 403 | 1.42e-62 | 204 |
| Msa0859250 | MtrunA17_Chr2g0316481 | 36.364 | 330 | 172 | 6 | 29 | 321 | 74 | 402 | 2.12e-62 | 203 |
| Msa0859250 | MtrunA17_Chr2g0316831 | 36.061 | 330 | 173 | 6 | 29 | 321 | 110 | 438 | 3.04e-62 | 204 |
| Msa0859250 | MtrunA17_Chr1g0181511 | 36.213 | 301 | 186 | 4 | 29 | 325 | 25 | 323 | 5.04e-62 | 200 |
| Msa0859250 | MtrunA17_Chr2g0329641 | 36.145 | 332 | 187 | 7 | 12 | 325 | 11 | 335 | 9.06e-62 | 200 |
| Msa0859250 | MtrunA17_Chr4g0053871 | 35.604 | 323 | 189 | 6 | 11 | 321 | 5 | 320 | 3.41e-61 | 198 |
| Msa0859250 | MtrunA17_Chr8g0364291 | 36.909 | 317 | 193 | 4 | 16 | 325 | 8 | 324 | 5.38e-61 | 197 |
| Msa0859250 | MtrunA17_Chr6g0451571 | 34.277 | 318 | 191 | 5 | 20 | 325 | 23 | 334 | 7.22e-60 | 195 |
| Msa0859250 | MtrunA17_Chr3g0136751 | 35.474 | 327 | 194 | 4 | 9 | 325 | 3 | 322 | 7.13e-59 | 192 |
| Msa0859250 | MtrunA17_Chr1g0181481 | 35.000 | 300 | 191 | 3 | 29 | 325 | 25 | 323 | 1.05e-58 | 191 |
| Msa0859250 | MtrunA17_Chr1g0181431 | 34.333 | 300 | 193 | 3 | 29 | 325 | 25 | 323 | 7.75e-58 | 189 |
| Msa0859250 | MtrunA17_Chr6g0467121 | 36.913 | 298 | 177 | 7 | 31 | 325 | 74 | 363 | 3.58e-57 | 189 |
| Msa0859250 | MtrunA17_Chr4g0074851 | 33.439 | 314 | 203 | 4 | 13 | 321 | 12 | 324 | 1.18e-55 | 184 |
| Msa0859250 | MtrunA17_Chr2g0311241 | 31.016 | 374 | 178 | 7 | 29 | 324 | 58 | 429 | 9.68e-54 | 181 |
| Msa0859250 | MtrunA17_Chr2g0311251 | 33.432 | 338 | 176 | 9 | 29 | 324 | 9 | 339 | 2.31e-52 | 176 |
| Msa0859250 | MtrunA17_Chr5g0413051 | 34.700 | 317 | 185 | 7 | 25 | 325 | 67 | 377 | 1.71e-49 | 169 |
| Msa0859250 | MtrunA17_Chr3g0114491 | 69.444 | 108 | 33 | 0 | 31 | 138 | 18 | 125 | 1.33e-46 | 154 |
| Msa0859250 | MtrunA17_Chr2g0292281 | 40.566 | 212 | 105 | 4 | 123 | 325 | 17 | 216 | 1.39e-41 | 144 |
| Msa0859250 | MtrunA17_Chr2g0316811 | 42.353 | 170 | 95 | 2 | 29 | 196 | 48 | 216 | 8.81e-41 | 145 |
| Msa0859250 | MtrunA17_Chr4g0004591 | 28.840 | 319 | 162 | 5 | 31 | 324 | 77 | 355 | 2.46e-39 | 142 |
| Msa0859250 | MtrunA17_Chr2g0316141 | 34.444 | 270 | 155 | 8 | 77 | 325 | 11 | 279 | 7.48e-38 | 136 |
| Msa0859250 | MtrunA17_Chr2g0316181 | 34.444 | 270 | 155 | 8 | 77 | 325 | 11 | 279 | 7.48e-38 | 136 |
| Msa0859250 | MtrunA17_Chr5g0432321 | 53.782 | 119 | 52 | 2 | 152 | 270 | 17 | 132 | 1.01e-35 | 125 |
| Msa0859250 | MtrunA17_Chr1g0181501 | 31.383 | 188 | 125 | 3 | 141 | 325 | 3 | 189 | 1.68e-27 | 106 |
| Msa0859250 | MtrunA17_Chr5g0432361 | 52.222 | 90 | 40 | 2 | 237 | 324 | 20 | 108 | 3.25e-25 | 97.8 |
| Msa0859250 | MtrunA17_Chr3g0104101 | 38.028 | 142 | 76 | 4 | 195 | 325 | 9 | 149 | 8.79e-22 | 89.7 |
| Msa0859250 | MtrunA17_Chr6g0468731 | 56.944 | 72 | 27 | 2 | 70 | 141 | 22 | 89 | 1.34e-19 | 82.0 |
| Msa0859250 | MtrunA17_Chr4g0013811 | 50.000 | 74 | 37 | 0 | 142 | 215 | 6 | 79 | 1.72e-19 | 81.6 |
| Msa0859250 | MtrunA17_Chr1g0181491 | 35.115 | 131 | 83 | 2 | 28 | 158 | 9 | 137 | 4.14e-19 | 82.4 |
| Msa0859250 | MtrunA17_Chr7g0254181 | 40.000 | 95 | 54 | 1 | 103 | 197 | 31 | 122 | 1.64e-16 | 75.9 |
| Msa0859250 | MtrunA17_Chr2g0316771 | 28.409 | 176 | 91 | 3 | 181 | 321 | 7 | 182 | 3.75e-15 | 72.8 |
| Msa0859250 | MtrunA17_Chr3g0137751 | 26.848 | 257 | 121 | 8 | 63 | 304 | 106 | 310 | 4.72e-15 | 74.7 |
| Msa0859250 | MtrunA17_Chr1g0196191 | 53.623 | 69 | 31 | 1 | 70 | 138 | 24 | 91 | 1.49e-14 | 70.1 |
| Msa0859250 | MtrunA17_Chr3g0124821 | 25.856 | 263 | 146 | 8 | 65 | 307 | 121 | 354 | 1.86e-13 | 70.5 |
| Msa0859250 | MtrunA17_Chr7g0268491 | 40.476 | 84 | 49 | 1 | 242 | 325 | 15 | 97 | 1.45e-12 | 63.2 |
| Msa0859250 | MtrunA17_Chr7g0254171 | 38.889 | 72 | 43 | 1 | 77 | 148 | 4 | 74 | 3.12e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859250 | AT5G05340.1 | 72.727 | 297 | 81 | 0 | 29 | 325 | 28 | 324 | 6.69e-162 | 454 |
| Msa0859250 | AT5G58400.1 | 66.129 | 310 | 103 | 2 | 18 | 325 | 16 | 325 | 7.55e-144 | 409 |
| Msa0859250 | AT5G58390.1 | 62.540 | 315 | 117 | 1 | 12 | 325 | 2 | 316 | 2.25e-137 | 392 |
| Msa0859250 | AT1G14550.1 | 56.508 | 315 | 128 | 5 | 18 | 325 | 9 | 321 | 1.05e-117 | 342 |
| Msa0859250 | AT4G36430.1 | 52.500 | 320 | 141 | 4 | 14 | 325 | 14 | 330 | 2.83e-114 | 334 |
| Msa0859250 | AT1G14540.1 | 53.312 | 317 | 142 | 4 | 13 | 325 | 1 | 315 | 8.84e-112 | 327 |
| Msa0859250 | AT2G18150.1 | 51.456 | 309 | 140 | 3 | 25 | 325 | 30 | 336 | 2.50e-111 | 327 |
| Msa0859250 | AT2G18140.1 | 50.323 | 310 | 144 | 3 | 24 | 325 | 28 | 335 | 3.45e-107 | 316 |
| Msa0859250 | AT5G66390.1 | 49.689 | 322 | 151 | 4 | 13 | 325 | 14 | 333 | 9.82e-107 | 315 |
| Msa0859250 | AT5G06720.1 | 48.457 | 324 | 154 | 4 | 13 | 325 | 12 | 333 | 1.89e-106 | 314 |
| Msa0859250 | AT1G44970.1 | 51.935 | 310 | 138 | 3 | 25 | 325 | 39 | 346 | 1.21e-104 | 310 |
| Msa0859250 | AT5G06730.1 | 47.321 | 336 | 164 | 5 | 1 | 325 | 1 | 334 | 7.83e-104 | 308 |
| Msa0859250 | AT3G50990.1 | 50.649 | 308 | 142 | 4 | 26 | 325 | 36 | 341 | 1.36e-102 | 305 |
| Msa0859250 | AT5G19890.1 | 50.154 | 325 | 141 | 7 | 12 | 325 | 13 | 327 | 9.12e-101 | 300 |
| Msa0859250 | AT2G35380.1 | 48.788 | 330 | 149 | 4 | 14 | 325 | 8 | 335 | 1.36e-98 | 294 |
| Msa0859250 | AT4G16270.1 | 52.013 | 298 | 131 | 4 | 36 | 325 | 55 | 348 | 1.44e-98 | 295 |
| Msa0859250 | AT3G32980.1 | 47.273 | 330 | 159 | 5 | 7 | 325 | 9 | 334 | 2.48e-97 | 291 |
| Msa0859250 | AT4G08770.1 | 47.937 | 315 | 151 | 4 | 22 | 325 | 15 | 327 | 4.83e-97 | 291 |
| Msa0859250 | AT2G38380.1 | 45.921 | 331 | 163 | 6 | 5 | 325 | 9 | 333 | 7.36e-97 | 290 |
| Msa0859250 | AT4G08780.1 | 46.815 | 314 | 154 | 4 | 23 | 325 | 16 | 327 | 7.63e-96 | 288 |
| Msa0859250 | AT2G38390.1 | 45.015 | 331 | 166 | 6 | 5 | 325 | 9 | 333 | 1.65e-95 | 287 |
| Msa0859250 | AT1G68850.1 | 44.300 | 307 | 158 | 4 | 31 | 325 | 30 | 335 | 2.31e-94 | 283 |
| Msa0859250 | AT1G49570.1 | 48.675 | 302 | 145 | 3 | 29 | 321 | 46 | 346 | 4.52e-94 | 283 |
| Msa0859250 | AT3G49110.1 | 45.538 | 325 | 156 | 5 | 12 | 325 | 22 | 336 | 1.16e-91 | 277 |
| Msa0859250 | AT3G49120.1 | 46.462 | 325 | 160 | 5 | 12 | 325 | 14 | 335 | 5.52e-91 | 275 |
| Msa0859250 | AT2G22420.1 | 42.945 | 326 | 171 | 5 | 7 | 325 | 2 | 319 | 1.52e-85 | 261 |
| Msa0859250 | AT5G19880.1 | 44.000 | 325 | 167 | 5 | 14 | 325 | 7 | 329 | 1.79e-85 | 261 |
| Msa0859250 | AT3G01190.1 | 41.538 | 325 | 175 | 6 | 9 | 325 | 4 | 321 | 9.98e-79 | 243 |
| Msa0859250 | AT5G64120.1 | 40.549 | 328 | 173 | 8 | 12 | 325 | 9 | 328 | 3.17e-78 | 242 |
| Msa0859250 | AT1G05240.1 | 41.196 | 301 | 162 | 5 | 31 | 321 | 26 | 321 | 5.68e-77 | 239 |
| Msa0859250 | AT1G05250.1 | 41.196 | 301 | 162 | 5 | 31 | 321 | 26 | 321 | 5.68e-77 | 239 |
| Msa0859250 | AT4G33420.1 | 44.257 | 296 | 157 | 5 | 31 | 325 | 37 | 325 | 2.70e-76 | 237 |
| Msa0859250 | AT4G33420.2 | 44.257 | 296 | 157 | 5 | 31 | 325 | 84 | 372 | 1.89e-75 | 236 |
| Msa0859250 | AT2G41480.1 | 42.462 | 325 | 167 | 8 | 14 | 325 | 11 | 328 | 2.57e-75 | 234 |
| Msa0859250 | AT5G51890.1 | 39.264 | 326 | 186 | 5 | 7 | 325 | 2 | 322 | 3.27e-75 | 234 |
| Msa0859250 | AT2G35380.2 | 50.407 | 246 | 107 | 3 | 93 | 325 | 4 | 247 | 9.11e-75 | 230 |
| Msa0859250 | AT5G17820.1 | 41.009 | 317 | 167 | 6 | 17 | 325 | 9 | 313 | 2.55e-74 | 231 |
| Msa0859250 | AT5G15180.1 | 38.922 | 334 | 190 | 6 | 1 | 325 | 1 | 329 | 7.89e-74 | 231 |
| Msa0859250 | AT5G42180.1 | 41.358 | 324 | 166 | 6 | 13 | 324 | 5 | 316 | 1.59e-73 | 229 |
| Msa0859250 | AT5G17820.2 | 41.009 | 317 | 167 | 6 | 17 | 325 | 62 | 366 | 3.08e-73 | 231 |
| Msa0859250 | AT3G03670.1 | 39.937 | 318 | 175 | 4 | 18 | 325 | 10 | 321 | 2.40e-72 | 227 |
| Msa0859250 | AT1G71695.1 | 40.468 | 299 | 171 | 4 | 31 | 325 | 44 | 339 | 5.82e-72 | 227 |
| Msa0859250 | AT5G14130.1 | 37.267 | 322 | 190 | 4 | 12 | 325 | 13 | 330 | 1.60e-70 | 222 |
| Msa0859250 | AT5G14130.2 | 37.267 | 322 | 190 | 4 | 12 | 325 | 54 | 371 | 5.50e-70 | 222 |
| Msa0859250 | AT5G39580.1 | 41.946 | 298 | 159 | 7 | 35 | 325 | 29 | 319 | 4.07e-69 | 218 |
| Msa0859250 | AT4G37530.1 | 38.994 | 318 | 172 | 5 | 23 | 325 | 19 | 329 | 5.88e-69 | 218 |
| Msa0859250 | AT4G11290.1 | 39.875 | 321 | 177 | 7 | 18 | 325 | 9 | 326 | 2.96e-68 | 216 |
| Msa0859250 | AT5G40150.1 | 37.171 | 304 | 185 | 4 | 26 | 325 | 27 | 328 | 1.96e-67 | 214 |
| Msa0859250 | AT5G67400.1 | 37.952 | 332 | 184 | 6 | 13 | 325 | 1 | 329 | 2.70e-67 | 214 |
| Msa0859250 | AT1G05260.1 | 37.771 | 323 | 188 | 6 | 12 | 325 | 7 | 325 | 3.35e-67 | 214 |
| Msa0859250 | AT4G37520.1 | 37.179 | 312 | 174 | 5 | 29 | 325 | 25 | 329 | 3.83e-65 | 208 |
| Msa0859250 | AT4G17690.1 | 38.796 | 299 | 179 | 3 | 30 | 325 | 25 | 322 | 4.32e-65 | 208 |
| Msa0859250 | AT3G21770.1 | 38.361 | 305 | 175 | 6 | 26 | 321 | 24 | 324 | 4.41e-65 | 208 |
| Msa0859250 | AT3G49960.1 | 36.778 | 329 | 186 | 6 | 12 | 325 | 8 | 329 | 1.99e-64 | 207 |
| Msa0859250 | AT4G31760.1 | 37.879 | 330 | 184 | 5 | 5 | 325 | 9 | 326 | 2.32e-64 | 206 |
| Msa0859250 | AT1G34510.1 | 38.284 | 303 | 178 | 6 | 24 | 325 | 15 | 309 | 2.38e-64 | 206 |
| Msa0859250 | AT4G25980.1 | 37.188 | 320 | 181 | 7 | 19 | 325 | 14 | 326 | 2.55e-64 | 206 |
| Msa0859250 | AT4G33870.1 | 33.735 | 332 | 177 | 4 | 31 | 321 | 68 | 397 | 4.55e-64 | 208 |
| Msa0859250 | AT2G18980.1 | 37.812 | 320 | 181 | 6 | 17 | 325 | 11 | 323 | 8.34e-64 | 205 |
| Msa0859250 | AT1G77100.1 | 38.769 | 325 | 181 | 9 | 13 | 325 | 1 | 319 | 1.88e-63 | 204 |
| Msa0859250 | AT2G34060.1 | 41.368 | 307 | 166 | 7 | 28 | 322 | 39 | 343 | 2.37e-63 | 204 |
| Msa0859250 | AT4G26010.1 | 38.538 | 301 | 176 | 5 | 26 | 325 | 17 | 309 | 2.54e-63 | 203 |
| Msa0859250 | AT4G30170.1 | 38.312 | 308 | 172 | 5 | 29 | 325 | 25 | 325 | 2.65e-63 | 204 |
| Msa0859250 | AT5G64110.1 | 39.222 | 334 | 177 | 8 | 10 | 325 | 5 | 330 | 2.83e-63 | 204 |
| Msa0859250 | AT5G47000.1 | 37.812 | 320 | 191 | 5 | 12 | 325 | 13 | 330 | 3.34e-63 | 204 |
| Msa0859250 | AT1G30870.1 | 39.344 | 305 | 165 | 6 | 31 | 325 | 51 | 345 | 3.55e-63 | 204 |
| Msa0859250 | AT4G26010.2 | 38.538 | 301 | 176 | 5 | 26 | 325 | 45 | 337 | 5.44e-63 | 203 |
| Msa0859250 | AT4G37520.2 | 36.859 | 312 | 172 | 6 | 29 | 325 | 25 | 326 | 8.33e-63 | 202 |
| Msa0859250 | AT3G28200.1 | 35.082 | 305 | 189 | 4 | 26 | 325 | 16 | 316 | 1.17e-62 | 202 |
| Msa0859250 | AT5G64100.1 | 38.323 | 334 | 176 | 8 | 12 | 325 | 8 | 331 | 3.03e-62 | 201 |
| Msa0859250 | AT2G24800.1 | 38.235 | 306 | 175 | 3 | 29 | 325 | 29 | 329 | 1.10e-61 | 199 |
| Msa0859250 | AT1G24110.1 | 36.000 | 325 | 193 | 7 | 13 | 325 | 1 | 322 | 4.43e-60 | 195 |
| Msa0859250 | AT2G39040.1 | 38.730 | 315 | 175 | 8 | 25 | 325 | 40 | 350 | 5.43e-59 | 193 |
| Msa0859250 | AT4G37530.2 | 40.449 | 267 | 137 | 5 | 23 | 274 | 19 | 278 | 2.19e-58 | 189 |
| Msa0859250 | AT2G43480.1 | 35.220 | 318 | 184 | 7 | 22 | 325 | 26 | 335 | 5.12e-58 | 190 |
| Msa0859250 | AT4G21960.1 | 33.660 | 306 | 199 | 3 | 23 | 325 | 23 | 327 | 1.19e-57 | 189 |
| Msa0859250 | AT2G37130.1 | 35.526 | 304 | 187 | 5 | 28 | 325 | 27 | 327 | 2.00e-56 | 186 |
| Msa0859250 | AT2G37130.2 | 35.570 | 298 | 183 | 5 | 34 | 325 | 2 | 296 | 1.38e-55 | 183 |
| Msa0859250 | AT5G24070.1 | 34.641 | 306 | 177 | 7 | 35 | 325 | 38 | 335 | 1.76e-55 | 184 |
| Msa0859250 | AT5G22410.1 | 35.849 | 318 | 182 | 11 | 19 | 323 | 15 | 323 | 3.96e-52 | 175 |
| Msa0859250 | AT3G17070.1 | 31.118 | 331 | 215 | 5 | 7 | 325 | 10 | 339 | 1.65e-46 | 160 |
| Msa0859250 | AT5G39580.2 | 39.234 | 209 | 118 | 4 | 35 | 243 | 29 | 228 | 9.90e-42 | 145 |
| Msa0859250 | AT4G25980.2 | 42.222 | 180 | 100 | 3 | 19 | 198 | 59 | 234 | 4.54e-40 | 142 |
| Msa0859250 | AT2G24800.2 | 43.452 | 168 | 91 | 1 | 29 | 196 | 29 | 192 | 2.02e-38 | 137 |
| Msa0859250 | AT3G17070.2 | 30.268 | 261 | 172 | 5 | 73 | 325 | 18 | 276 | 4.15e-33 | 124 |
| Msa0859250 | AT4G32320.1 | 29.412 | 272 | 123 | 8 | 50 | 304 | 100 | 319 | 9.17e-17 | 80.1 |
| Msa0859250 | AT3G42570.1 | 37.363 | 91 | 56 | 1 | 107 | 196 | 57 | 147 | 3.85e-13 | 66.6 |
| Msa0859250 | AT4G08390.2 | 27.317 | 205 | 120 | 6 | 112 | 307 | 176 | 360 | 1.41e-12 | 68.2 |
| Msa0859250 | AT4G08390.5 | 27.317 | 205 | 120 | 6 | 112 | 307 | 176 | 360 | 1.41e-12 | 68.2 |
| Msa0859250 | AT4G08390.1 | 27.317 | 205 | 120 | 6 | 112 | 307 | 176 | 360 | 1.41e-12 | 68.2 |
| Msa0859250 | AT4G08390.3 | 27.317 | 205 | 120 | 6 | 112 | 307 | 175 | 359 | 1.59e-12 | 68.2 |
| Msa0859250 | AT4G35970.1 | 25.197 | 254 | 133 | 8 | 65 | 307 | 33 | 240 | 1.73e-11 | 64.3 |
| Msa0859250 | AT4G35970.2 | 26.496 | 234 | 115 | 8 | 65 | 287 | 33 | 220 | 2.51e-11 | 63.2 |
Find 89 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTTGTTTCTCCCTTT+TGG | 0.207068 | 5_4:+57448086 | Msa0859250:CDS |
| TTCACAGTGTCAAATAGTTT+TGG | 0.292450 | 5_4:-57448171 | None:intergenic |
| AGGTTCCGGGGACAATAATT+TGG | 0.300472 | 5_4:+57450286 | Msa0859250:CDS |
| AGATTATCTAGTTAATTATA+TGG | 0.305672 | 5_4:+57448032 | Msa0859250:exon |
| GAGAGATAAGAAAGAATTGC+AGG | 0.319158 | 5_4:+57450528 | Msa0859250:CDS |
| TGGACTTTCCACCAAGGATT+TGG | 0.319515 | 5_4:+57449444 | Msa0859250:CDS |
| TTGAGGCTTGAAGTGGGTGC+TGG | 0.334026 | 5_4:-57449394 | None:intergenic |
| CAAGTTTCACATGCCATGTT+GGG | 0.339688 | 5_4:-57449321 | None:intergenic |
| ATCTCAAGGTTTAATGCTCT+TGG | 0.358777 | 5_4:+57449424 | Msa0859250:CDS |
| TTTGCTCGCACAAGGCAATC+AGG | 0.386172 | 5_4:+57450248 | Msa0859250:CDS |
| GTCCCAAGACATCAGGTTCC+GGG | 0.396617 | 5_4:+57450273 | Msa0859250:CDS |
| CAAGCTATATTCATGCACTA+TGG | 0.398480 | 5_4:-57450426 | None:intergenic |
| AAGGATTTGGTCGCATTGTC+TGG | 0.403525 | 5_4:+57449457 | Msa0859250:CDS |
| TGCCAATCCCAACAGAAATT+CGG | 0.407832 | 5_4:+57448954 | Msa0859250:CDS |
| TGTCCCAAGACATCAGGTTC+CGG | 0.410509 | 5_4:+57450272 | Msa0859250:CDS |
| GTCCCCGGAACCTGATGTCT+TGG | 0.417118 | 5_4:-57450276 | None:intergenic |
| CATGCGGGTCTCCTTTGATA+TGG | 0.427995 | 5_4:-57448211 | None:intergenic |
| TGATTCCAAGTGAATGTTGA+AGG | 0.428730 | 5_4:+57450713 | Msa0859250:three_prime_UTR |
| CCAAGTTTCACATGCCATGT+TGG | 0.430185 | 5_4:-57449322 | None:intergenic |
| GGACTAGGTGGTCACACAAT+TGG | 0.433074 | 5_4:+57450164 | Msa0859250:intron |
| TCTTATCTCTCCATTTGAAC+CGG | 0.435627 | 5_4:-57450516 | None:intergenic |
| TAGTGATTGTCAAAGGATAT+TGG | 0.440824 | 5_4:-57450329 | None:intergenic |
| CCACGGGCCGAATTTCTGTT+GGG | 0.448742 | 5_4:-57448961 | None:intergenic |
| TGAGGCTTGAAGTGGGTGCT+GGG | 0.458400 | 5_4:-57449393 | None:intergenic |
| GGCCGAATTTCTGTTGGGAT+TGG | 0.459419 | 5_4:-57448956 | None:intergenic |
| CAAGAACCTAGTTGACAGTA+AGG | 0.460120 | 5_4:+57450355 | Msa0859250:CDS |
| CCAACATGGCATGTGAAACT+TGG | 0.470302 | 5_4:+57449322 | Msa0859250:CDS |
| AGTCCCCTCACCGGTTCAAA+TGG | 0.471090 | 5_4:+57450506 | Msa0859250:CDS |
| CATTAAACCTTGAGATGAGT+TGG | 0.479053 | 5_4:-57449417 | None:intergenic |
| CTCTCCATTTGAACCGGTGA+GGG | 0.479821 | 5_4:-57450510 | None:intergenic |
| ATCTTTCGAAAGATTAGCAT+TGG | 0.480051 | 5_4:-57448130 | None:intergenic |
| GCTTAAATTTCCCAGCTTGG+AGG | 0.480636 | 5_4:+57449298 | Msa0859250:intron |
| TCTCTGAAGTACAATTAAGA+AGG | 0.482952 | 5_4:-57448012 | None:intergenic |
| ATCCACCATTGAAGAGTTGT+TGG | 0.491131 | 5_4:-57450394 | None:intergenic |
| TCCCCGGAACCTGATGTCTT+GGG | 0.501149 | 5_4:-57450275 | None:intergenic |
| TCCGACCAACAACTCTTCAA+TGG | 0.503794 | 5_4:+57450389 | Msa0859250:CDS |
| TCAGGGTGTCCCAAGACATC+AGG | 0.506220 | 5_4:+57450266 | Msa0859250:CDS |
| TCCACGGGCCGAATTTCTGT+TGG | 0.507509 | 5_4:-57448962 | None:intergenic |
| ACCTTGAGATGAGTTGGTTG+AGG | 0.512766 | 5_4:-57449411 | None:intergenic |
| TATTTATATTTAAGTTTGGA+CGG | 0.523042 | 5_4:+57450603 | Msa0859250:three_prime_UTR |
| AATGTCTCCCATCTTGATCA+TGG | 0.525103 | 5_4:-57450483 | None:intergenic |
| AGCAAAAGAAGTATCTATGT+TGG | 0.528285 | 5_4:-57450231 | None:intergenic |
| GTCAATCACTTCGAATCCAC+GGG | 0.532914 | 5_4:-57448977 | None:intergenic |
| AGACAATGCGACCAAATCCT+TGG | 0.535960 | 5_4:-57449455 | None:intergenic |
| GATGACACATCAAGCTTCAC+CGG | 0.536161 | 5_4:+57448922 | Msa0859250:CDS |
| TGAAGAGTTGTTGGTCGGAG+TGG | 0.547022 | 5_4:-57450385 | None:intergenic |
| CTTGAAATAGTGATTGTCAA+AGG | 0.547197 | 5_4:-57450336 | None:intergenic |
| AAACCATTGTAGGGATGTGA+TGG | 0.548386 | 5_4:+57448886 | Msa0859250:intron |
| AATTGATACAAGAACCAAAA+GGG | 0.548391 | 5_4:-57448100 | None:intergenic |
| CGTCACCGCCATGATCAAGA+TGG | 0.548522 | 5_4:+57450475 | Msa0859250:CDS |
| TGTCAATCACTTCGAATCCA+CGG | 0.551873 | 5_4:-57448978 | None:intergenic |
| TTGCTCGCACAAGGCAATCA+GGG | 0.555042 | 5_4:+57450249 | Msa0859250:CDS |
| AACAGAGTCTCTAGCAGTGA+TGG | 0.555738 | 5_4:-57449061 | None:intergenic |
| TTTATCCTTCAACATTCACT+TGG | 0.559238 | 5_4:-57450718 | None:intergenic |
| CAATGCGACCAAATCCTTGG+TGG | 0.568698 | 5_4:-57449452 | None:intergenic |
| TAGAAGAGAAGCACCCATGC+GGG | 0.569776 | 5_4:-57448226 | None:intergenic |
| GCCTCAACCAACTCATCTCA+AGG | 0.573068 | 5_4:+57449410 | Msa0859250:CDS |
| AGGTGCCAAATTATTGTCCC+CGG | 0.573503 | 5_4:-57450291 | None:intergenic |
| CAATTGATACAAGAACCAAA+AGG | 0.573924 | 5_4:-57448101 | None:intergenic |
| ACCATTGAAGAGTTGTTGGT+CGG | 0.577335 | 5_4:-57450390 | None:intergenic |
| CATATCAAAGGAGACCCGCA+TGG | 0.578197 | 5_4:+57448212 | Msa0859250:CDS |
| TTCATGCACTATGGAATCAG+TGG | 0.582013 | 5_4:-57450417 | None:intergenic |
| CCCAACAGAAATTCGGCCCG+TGG | 0.584922 | 5_4:+57448961 | Msa0859250:CDS |
| CCCAGCTTGGAGGCCCAACA+TGG | 0.585145 | 5_4:+57449308 | Msa0859250:intron |
| GAGTTGGTTGAGGCTTGAAG+TGG | 0.587942 | 5_4:-57449401 | None:intergenic |
| GTCACCGCCATGATCAAGAT+GGG | 0.592934 | 5_4:+57450476 | Msa0859250:CDS |
| AGTCTCTAGCAGTGATGGTG+AGG | 0.603184 | 5_4:-57449056 | None:intergenic |
| GCAGTGGAGAAAGTATGTCC+AGG | 0.603574 | 5_4:+57449012 | Msa0859250:CDS |
| TCAGCGCATGAAACTGCACC+TGG | 0.605024 | 5_4:-57449030 | None:intergenic |
| GTAGTCCCTTACTGTCAACT+AGG | 0.605278 | 5_4:-57450361 | None:intergenic |
| GACCAACAACTCTTCAATGG+TGG | 0.606439 | 5_4:+57450392 | Msa0859250:CDS |
| GTCACACAATTGGACAAGCA+AGG | 0.609025 | 5_4:+57450174 | Msa0859250:CDS |
| AGTTCAATCTGCCATATCAA+AGG | 0.613488 | 5_4:+57448200 | Msa0859250:CDS |
| ATTGGTGTTGCAAGATCAAG+AGG | 0.614325 | 5_4:-57450311 | None:intergenic |
| AGTAAATCAGCTGCAAACAA+TGG | 0.614802 | 5_4:+57449367 | Msa0859250:CDS |
| GTACATTAACAAAGCAATCG+TGG | 0.614906 | 5_4:-57448260 | None:intergenic |
| AGTTGGTTGAGGCTTGAAGT+GGG | 0.615516 | 5_4:-57449400 | None:intergenic |
| TGTTGGAGTCGTTGTAAATG+TGG | 0.616544 | 5_4:-57450214 | None:intergenic |
| AAGAACCTAGTTGACAGTAA+GGG | 0.623353 | 5_4:+57450356 | Msa0859250:CDS |
| TCTCTCCATTTGAACCGGTG+AGG | 0.624609 | 5_4:-57450511 | None:intergenic |
| GGAGACATTAGTCCCCTCAC+CGG | 0.627716 | 5_4:+57450497 | Msa0859250:CDS |
| TGACAAAATCAAGTCAGCAG+TGG | 0.633217 | 5_4:+57448996 | Msa0859250:CDS |
| TCCCAAGACATCAGGTTCCG+GGG | 0.637903 | 5_4:+57450274 | Msa0859250:CDS |
| TCTCCATTTGAACCGGTGAG+GGG | 0.638254 | 5_4:-57450509 | None:intergenic |
| ATATCAAAGGAGACCCGCAT+GGG | 0.639894 | 5_4:+57448213 | Msa0859250:CDS |
| TGCTCTTGGACTTTCCACCA+AGG | 0.642254 | 5_4:+57449438 | Msa0859250:CDS |
| CATGGCGGTGACGAAATCAG+AGG | 0.705431 | 5_4:-57450465 | None:intergenic |
| GTCTCCCATCTTGATCATGG+CGG | 0.710146 | 5_4:-57450480 | None:intergenic |
| GTAGAAGAGAAGCACCCATG+CGG | 0.717536 | 5_4:-57448227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAAGTTAAAAGT+AGG | - | chr5_4:57448544-57448563 | None:intergenic | 10.0% |
| !!! | TAAACAATTTAATTTTTTGT+TGG | + | chr5_4:57450560-57450579 | Msa0859250:exon | 10.0% |
| !! | AGATTATCTAGTTAATTATA+TGG | + | chr5_4:57448032-57448051 | Msa0859250:exon | 15.0% |
| !!! | TATTTAACAATATTGACTTA+TGG | + | chr5_4:57448592-57448611 | Msa0859250:intron | 15.0% |
| !! | TAAAAAATTAATGTGATCAT+AGG | + | chr5_4:57448696-57448715 | Msa0859250:intron | 15.0% |
| !!! | TTTATTCTCTAAAATGTATA+GGG | - | chr5_4:57449168-57449187 | None:intergenic | 15.0% |
| !!! | AAATAAGTGATTTAATTTGA+CGG | - | chr5_4:57449838-57449857 | None:intergenic | 15.0% |
| !!! | TTAAATCACTTATTTTAAGA+CGG | + | chr5_4:57449843-57449862 | Msa0859250:intron | 15.0% |
| !!! | GATTTTTTTTAAATGATACT+TGG | + | chr5_4:57450143-57450162 | Msa0859250:intron | 15.0% |
| !!! | TATTTATATTTAAGTTTGGA+CGG | + | chr5_4:57450603-57450622 | Msa0859250:three_prime_UTR | 15.0% |
| !!! | TTTGTTGTACTTTATTTTAT+TGG | + | chr5_4:57450650-57450669 | Msa0859250:three_prime_UTR | 15.0% |
| !!! | TATATTAAGGTTTGTTTTAA+TGG | + | chr5_4:57450749-57450768 | Msa0859250:three_prime_UTR | 15.0% |
| !! | ATGTAATTGAATGTAAGTAA+GGG | - | chr5_4:57448300-57448319 | None:intergenic | 20.0% |
| !! | AATGTAATTGAATGTAAGTA+AGG | - | chr5_4:57448301-57448320 | None:intergenic | 20.0% |
| !! | CTTATTTATAAGACACATTT+GGG | - | chr5_4:57448468-57448487 | None:intergenic | 20.0% |
| !!! | TCTTATTTATAAGACACATT+TGG | - | chr5_4:57448469-57448488 | None:intergenic | 20.0% |
| !! | TTGAATAAATAAACCATTGT+AGG | + | chr5_4:57448876-57448895 | Msa0859250:intron | 20.0% |
| !! | TGAATAAATAAACCATTGTA+GGG | + | chr5_4:57448877-57448896 | Msa0859250:intron | 20.0% |
| !!! | TGATTATTATGATGCATTTT+TGG | - | chr5_4:57449104-57449123 | None:intergenic | 20.0% |
| !!! | CTTTATTCTCTAAAATGTAT+AGG | - | chr5_4:57449169-57449188 | None:intergenic | 20.0% |
| !! | AATCAATAGAATGTATTTGT+CGG | - | chr5_4:57449503-57449522 | None:intergenic | 20.0% |
| !! | TAAGTCAATTTGTCAATAAT+TGG | + | chr5_4:57449522-57449541 | Msa0859250:intron | 20.0% |
| !! | TTTAAAGAATGTCATACAAT+AGG | + | chr5_4:57449917-57449936 | Msa0859250:intron | 20.0% |
| !!! | TTAGTTTTTCATTGATTGAT+CGG | + | chr5_4:57450054-57450073 | Msa0859250:intron | 20.0% |
| !! | AATAAAAAGATACGTGTATT+TGG | - | chr5_4:57450587-57450606 | None:intergenic | 20.0% |
| ! | AATTGATACAAGAACCAAAA+GGG | - | chr5_4:57448103-57448122 | None:intergenic | 25.0% |
| !!! | TTTTGGTTCTTGTATCAATT+GGG | + | chr5_4:57448103-57448122 | Msa0859250:CDS | 25.0% |
| ! | TCTCTTATAAATAAGATCGA+AGG | - | chr5_4:57448378-57448397 | None:intergenic | 25.0% |
| !! | ATAGAATGATTTTCCACTAA+CGG | + | chr5_4:57448509-57448528 | Msa0859250:intron | 25.0% |
| ! | AATTAATGTGATCATAGGAT+TGG | + | chr5_4:57448701-57448720 | Msa0859250:intron | 25.0% |
| !!! | TTATTATGATGCATTTTTGG+TGG | - | chr5_4:57449101-57449120 | None:intergenic | 25.0% |
| ! | TTAATAATAATTTCCACCCA+TGG | - | chr5_4:57449608-57449627 | None:intergenic | 25.0% |
| ! | GAAATTATTATTAACATGCG+TGG | + | chr5_4:57449614-57449633 | Msa0859250:intron | 25.0% |
| ! | TAAAAATAATTCCGCTGAAA+TGG | - | chr5_4:57450026-57450045 | None:intergenic | 25.0% |
| !!! | TAGTTTTTCATTGATTGATC+GGG | + | chr5_4:57450055-57450074 | Msa0859250:intron | 25.0% |
| !! | TTTTAAATGATACTTGGACT+AGG | + | chr5_4:57450149-57450168 | Msa0859250:intron | 25.0% |
| !! | TCTCTGAAGTACAATTAAGA+AGG | - | chr5_4:57448015-57448034 | None:intergenic | 30.0% |
| !!! | AATGATTTGTTTCTCCCTTT+TGG | + | chr5_4:57448086-57448105 | Msa0859250:CDS | 30.0% |
| CAATTGATACAAGAACCAAA+AGG | - | chr5_4:57448104-57448123 | None:intergenic | 30.0% | |
| !!! | CTTTTGGTTCTTGTATCAAT+TGG | + | chr5_4:57448102-57448121 | Msa0859250:CDS | 30.0% |
| ATCTTTCGAAAGATTAGCAT+TGG | - | chr5_4:57448133-57448152 | None:intergenic | 30.0% | |
| ! | TTCACAGTGTCAAATAGTTT+TGG | - | chr5_4:57448174-57448193 | None:intergenic | 30.0% |
| AATTGAATGTAAGTAAGGGA+GGG | - | chr5_4:57448296-57448315 | None:intergenic | 30.0% | |
| TAATTGAATGTAAGTAAGGG+AGG | - | chr5_4:57448297-57448316 | None:intergenic | 30.0% | |
| TAAACAAAAGTCGATGTATG+TGG | + | chr5_4:57448406-57448425 | Msa0859250:intron | 30.0% | |
| ! | TATGCCATGCTAGTTTAATT+AGG | + | chr5_4:57448634-57448653 | Msa0859250:intron | 30.0% |
| TCATCCTAATTAAACTAGCA+TGG | - | chr5_4:57448641-57448660 | None:intergenic | 30.0% | |
| AAAAGCAAGTAACATCAAAG+AGG | - | chr5_4:57448673-57448692 | None:intergenic | 30.0% | |
| CTATGAACTATACGATTCAT+TGG | + | chr5_4:57448843-57448862 | Msa0859250:intron | 30.0% | |
| TTTACACTGATCGTTCAATT+AGG | - | chr5_4:57449214-57449233 | None:intergenic | 30.0% | |
| TCTATATTCGTATTCACTCA+CGG | - | chr5_4:57449248-57449267 | None:intergenic | 30.0% | |
| AAACAATGAAACATAAAGGG+TGG | - | chr5_4:57450111-57450130 | None:intergenic | 30.0% | |
| ACCCTTTATGTTTCATTGTT+TGG | + | chr5_4:57450110-57450129 | Msa0859250:intron | 30.0% | |
| CCCAAACAATGAAACATAAA+GGG | - | chr5_4:57450114-57450133 | None:intergenic | 30.0% | |
| CCCTTTATGTTTCATTGTTT+GGG | + | chr5_4:57450111-57450130 | Msa0859250:intron | 30.0% | |
| CCTTTATGTTTCATTGTTTG+GGG | + | chr5_4:57450112-57450131 | Msa0859250:intron | 30.0% | |
| !! | AGCAAAAGAAGTATCTATGT+TGG | - | chr5_4:57450234-57450253 | None:intergenic | 30.0% |
| TAGTGATTGTCAAAGGATAT+TGG | - | chr5_4:57450332-57450351 | None:intergenic | 30.0% | |
| CTTGAAATAGTGATTGTCAA+AGG | - | chr5_4:57450339-57450358 | None:intergenic | 30.0% | |
| TTTATCCTTCAACATTCACT+TGG | - | chr5_4:57450721-57450740 | None:intergenic | 30.0% | |
| AGTTCAATCTGCCATATCAA+AGG | + | chr5_4:57448200-57448219 | Msa0859250:CDS | 35.0% | |
| GTACATTAACAAAGCAATCG+TGG | - | chr5_4:57448263-57448282 | None:intergenic | 35.0% | |
| ATTGAATGTAAGTAAGGGAG+GGG | - | chr5_4:57448295-57448314 | None:intergenic | 35.0% | |
| ! | ATGATTTTCCACTAACGGTT+TGG | + | chr5_4:57448514-57448533 | Msa0859250:intron | 35.0% |
| TGACTTATGGTTTCTTTGTC+TGG | + | chr5_4:57448605-57448624 | Msa0859250:intron | 35.0% | |
| TATGCTTAAATTTCCCAGCT+TGG | + | chr5_4:57449295-57449314 | Msa0859250:intron | 35.0% | |
| AGTAAATCAGCTGCAAACAA+TGG | + | chr5_4:57449367-57449386 | Msa0859250:CDS | 35.0% | |
| CATTAAACCTTGAGATGAGT+TGG | - | chr5_4:57449420-57449439 | None:intergenic | 35.0% | |
| ATCTCAAGGTTTAATGCTCT+TGG | + | chr5_4:57449424-57449443 | Msa0859250:CDS | 35.0% | |
| AGAGAAATTGATAGATGCCA+TGG | + | chr5_4:57449588-57449607 | Msa0859250:intron | 35.0% | |
| GAGAAATTGATAGATGCCAT+GGG | + | chr5_4:57449589-57449608 | Msa0859250:intron | 35.0% | |
| !!! | AATCGTCGCTTATTTTGAGA+CGG | - | chr5_4:57449658-57449677 | None:intergenic | 35.0% |
| AAAACTGACTACCATTTCAG+CGG | + | chr5_4:57450012-57450031 | Msa0859250:intron | 35.0% | |
| CCCCAAACAATGAAACATAA+AGG | - | chr5_4:57450115-57450134 | None:intergenic | 35.0% | |
| ! | TAAATGATACTTGGACTAGG+TGG | + | chr5_4:57450152-57450171 | Msa0859250:intron | 35.0% |
| AAGAACCTAGTTGACAGTAA+GGG | + | chr5_4:57450356-57450375 | Msa0859250:CDS | 35.0% | |
| CAAGCTATATTCATGCACTA+TGG | - | chr5_4:57450429-57450448 | None:intergenic | 35.0% | |
| AAATCAGAGGAAAAAGAGCT+TGG | - | chr5_4:57450455-57450474 | None:intergenic | 35.0% | |
| TCTTATCTCTCCATTTGAAC+CGG | - | chr5_4:57450519-57450538 | None:intergenic | 35.0% | |
| GAGAGATAAGAAAGAATTGC+AGG | + | chr5_4:57450528-57450547 | Msa0859250:CDS | 35.0% | |
| TGATTCCAAGTGAATGTTGA+AGG | + | chr5_4:57450713-57450732 | Msa0859250:three_prime_UTR | 35.0% | |
| TAGGTAAACCAAACCGTTAG+TGG | - | chr5_4:57448525-57448544 | None:intergenic | 40.0% | |
| AAACCATTGTAGGGATGTGA+TGG | + | chr5_4:57448886-57448905 | Msa0859250:intron | 40.0% | |
| TGCCAATCCCAACAGAAATT+CGG | + | chr5_4:57448954-57448973 | Msa0859250:CDS | 40.0% | |
| TGTCAATCACTTCGAATCCA+CGG | - | chr5_4:57448981-57449000 | None:intergenic | 40.0% | |
| TGACAAAATCAAGTCAGCAG+TGG | + | chr5_4:57448996-57449015 | Msa0859250:CDS | 40.0% | |
| CAAGTTTCACATGCCATGTT+GGG | - | chr5_4:57449324-57449343 | None:intergenic | 40.0% | |
| AAATTGATAGATGCCATGGG+TGG | + | chr5_4:57449592-57449611 | Msa0859250:intron | 40.0% | |
| TGTTGGAGTCGTTGTAAATG+TGG | - | chr5_4:57450217-57450236 | None:intergenic | 40.0% | |
| ! | ATACTTCTTTTGCTCGCACA+AGG | + | chr5_4:57450240-57450259 | Msa0859250:CDS | 40.0% |
| !! | ATTGGTGTTGCAAGATCAAG+AGG | - | chr5_4:57450314-57450333 | None:intergenic | 40.0% |
| CAAGAACCTAGTTGACAGTA+AGG | + | chr5_4:57450355-57450374 | Msa0859250:CDS | 40.0% | |
| ACCATTGAAGAGTTGTTGGT+CGG | - | chr5_4:57450393-57450412 | None:intergenic | 40.0% | |
| ATCCACCATTGAAGAGTTGT+TGG | - | chr5_4:57450397-57450416 | None:intergenic | 40.0% | |
| TTCATGCACTATGGAATCAG+TGG | - | chr5_4:57450420-57450439 | None:intergenic | 40.0% | |
| AATGTCTCCCATCTTGATCA+TGG | - | chr5_4:57450486-57450505 | None:intergenic | 40.0% | |
| ATATCAAAGGAGACCCGCAT+GGG | + | chr5_4:57448213-57448232 | Msa0859250:CDS | 45.0% | |
| GAACCATCACATCCCTACAA+TGG | - | chr5_4:57448892-57448911 | None:intergenic | 45.0% | |
| GATGACACATCAAGCTTCAC+CGG | + | chr5_4:57448922-57448941 | Msa0859250:CDS | 45.0% | |
| GTCAATCACTTCGAATCCAC+GGG | - | chr5_4:57448980-57448999 | None:intergenic | 45.0% | |
| AACAGAGTCTCTAGCAGTGA+TGG | - | chr5_4:57449064-57449083 | None:intergenic | 45.0% | |
| GCTTAAATTTCCCAGCTTGG+AGG | + | chr5_4:57449298-57449317 | Msa0859250:intron | 45.0% | |
| CCAAGTTTCACATGCCATGT+TGG | - | chr5_4:57449325-57449344 | None:intergenic | 45.0% | |
| CCAACATGGCATGTGAAACT+TGG | + | chr5_4:57449322-57449341 | Msa0859250:CDS | 45.0% | |
| AGTTGGTTGAGGCTTGAAGT+GGG | - | chr5_4:57449403-57449422 | None:intergenic | 45.0% | |
| !! | ACCTTGAGATGAGTTGGTTG+AGG | - | chr5_4:57449414-57449433 | None:intergenic | 45.0% |
| TGGACTTTCCACCAAGGATT+TGG | + | chr5_4:57449444-57449463 | Msa0859250:CDS | 45.0% | |
| AGACAATGCGACCAAATCCT+TGG | - | chr5_4:57449458-57449477 | None:intergenic | 45.0% | |
| ! | AAGGATTTGGTCGCATTGTC+TGG | + | chr5_4:57449457-57449476 | Msa0859250:CDS | 45.0% |
| GTCACACAATTGGACAAGCA+AGG | + | chr5_4:57450174-57450193 | Msa0859250:CDS | 45.0% | |
| AGGTTCCGGGGACAATAATT+TGG | + | chr5_4:57450286-57450305 | Msa0859250:CDS | 45.0% | |
| AGGTGCCAAATTATTGTCCC+CGG | - | chr5_4:57450294-57450313 | None:intergenic | 45.0% | |
| GTAGTCCCTTACTGTCAACT+AGG | - | chr5_4:57450364-57450383 | None:intergenic | 45.0% | |
| TCCGACCAACAACTCTTCAA+TGG | + | chr5_4:57450389-57450408 | Msa0859250:CDS | 45.0% | |
| GACCAACAACTCTTCAATGG+TGG | + | chr5_4:57450392-57450411 | Msa0859250:CDS | 45.0% | |
| !!! | TATTTTTCTTTTATTATTTA+AGG | - | chr5_4:57449789-57449808 | None:intergenic | 5.0% |
| !! | TAAATAATAAAAGAAAAATA+TGG | + | chr5_4:57449789-57449808 | Msa0859250:intron | 5.0% |
| !!! | TTTTTATTTATATTTAAGTT+TGG | + | chr5_4:57450599-57450618 | Msa0859250:three_prime_UTR | 5.0% |
| !! | ATAAAAAACTTTATATATTA+AGG | + | chr5_4:57450736-57450755 | Msa0859250:three_prime_UTR | 5.0% |
| CATGCGGGTCTCCTTTGATA+TGG | - | chr5_4:57448214-57448233 | None:intergenic | 50.0% | |
| CATATCAAAGGAGACCCGCA+TGG | + | chr5_4:57448212-57448231 | Msa0859250:CDS | 50.0% | |
| !! | TAGAAGAGAAGCACCCATGC+GGG | - | chr5_4:57448229-57448248 | None:intergenic | 50.0% |
| !! | GTAGAAGAGAAGCACCCATG+CGG | - | chr5_4:57448230-57448249 | None:intergenic | 50.0% |
| !! | GGGATTGGCAGTTTTCTCTC+CGG | - | chr5_4:57448944-57448963 | None:intergenic | 50.0% |
| GGCCGAATTTCTGTTGGGAT+TGG | - | chr5_4:57448959-57448978 | None:intergenic | 50.0% | |
| ! | GCAGTGGAGAAAGTATGTCC+AGG | + | chr5_4:57449012-57449031 | Msa0859250:CDS | 50.0% |
| ! | AGTCTCTAGCAGTGATGGTG+AGG | - | chr5_4:57449059-57449078 | None:intergenic | 50.0% |
| ! | GAGTTGGTTGAGGCTTGAAG+TGG | - | chr5_4:57449404-57449423 | None:intergenic | 50.0% |
| GCCTCAACCAACTCATCTCA+AGG | + | chr5_4:57449410-57449429 | Msa0859250:CDS | 50.0% | |
| TGCTCTTGGACTTTCCACCA+AGG | + | chr5_4:57449438-57449457 | Msa0859250:CDS | 50.0% | |
| CAATGCGACCAAATCCTTGG+TGG | - | chr5_4:57449455-57449474 | None:intergenic | 50.0% | |
| GGACTAGGTGGTCACACAAT+TGG | + | chr5_4:57450164-57450183 | Msa0859250:intron | 50.0% | |
| TTTGCTCGCACAAGGCAATC+AGG | + | chr5_4:57450248-57450267 | Msa0859250:CDS | 50.0% | |
| TTGCTCGCACAAGGCAATCA+GGG | + | chr5_4:57450249-57450268 | Msa0859250:CDS | 50.0% | |
| TGTCCCAAGACATCAGGTTC+CGG | + | chr5_4:57450272-57450291 | Msa0859250:CDS | 50.0% | |
| TGAAGAGTTGTTGGTCGGAG+TGG | - | chr5_4:57450388-57450407 | None:intergenic | 50.0% | |
| GTCACCGCCATGATCAAGAT+GGG | + | chr5_4:57450476-57450495 | Msa0859250:CDS | 50.0% | |
| GTCTCCCATCTTGATCATGG+CGG | - | chr5_4:57450483-57450502 | None:intergenic | 50.0% | |
| TCTCCATTTGAACCGGTGAG+GGG | - | chr5_4:57450512-57450531 | None:intergenic | 50.0% | |
| CTCTCCATTTGAACCGGTGA+GGG | - | chr5_4:57450513-57450532 | None:intergenic | 50.0% | |
| TCTCTCCATTTGAACCGGTG+AGG | - | chr5_4:57450514-57450533 | None:intergenic | 50.0% | |
| CCACGGGCCGAATTTCTGTT+GGG | - | chr5_4:57448964-57448983 | None:intergenic | 55.0% | |
| TCCACGGGCCGAATTTCTGT+TGG | - | chr5_4:57448965-57448984 | None:intergenic | 55.0% | |
| TCAGCGCATGAAACTGCACC+TGG | - | chr5_4:57449033-57449052 | None:intergenic | 55.0% | |
| TGAGGCTTGAAGTGGGTGCT+GGG | - | chr5_4:57449396-57449415 | None:intergenic | 55.0% | |
| TTGAGGCTTGAAGTGGGTGC+TGG | - | chr5_4:57449397-57449416 | None:intergenic | 55.0% | |
| ! | TCAGGGTGTCCCAAGACATC+AGG | + | chr5_4:57450266-57450285 | Msa0859250:CDS | 55.0% |
| GTCCCAAGACATCAGGTTCC+GGG | + | chr5_4:57450273-57450292 | Msa0859250:CDS | 55.0% | |
| TCCCAAGACATCAGGTTCCG+GGG | + | chr5_4:57450274-57450293 | Msa0859250:CDS | 55.0% | |
| TCCCCGGAACCTGATGTCTT+GGG | - | chr5_4:57450278-57450297 | None:intergenic | 55.0% | |
| CATGGCGGTGACGAAATCAG+AGG | - | chr5_4:57450468-57450487 | None:intergenic | 55.0% | |
| CGTCACCGCCATGATCAAGA+TGG | + | chr5_4:57450475-57450494 | Msa0859250:CDS | 55.0% | |
| GGAGACATTAGTCCCCTCAC+CGG | + | chr5_4:57450497-57450516 | Msa0859250:CDS | 55.0% | |
| !! | AGTCCCCTCACCGGTTCAAA+TGG | + | chr5_4:57450506-57450525 | Msa0859250:CDS | 55.0% |
| CCCAACAGAAATTCGGCCCG+TGG | + | chr5_4:57448961-57448980 | Msa0859250:CDS | 60.0% | |
| CCATGTTGGGCCTCCAAGCT+GGG | - | chr5_4:57449311-57449330 | None:intergenic | 60.0% | |
| GTCCCCGGAACCTGATGTCT+TGG | - | chr5_4:57450279-57450298 | None:intergenic | 60.0% | |
| CCCAGCTTGGAGGCCCAACA+TGG | + | chr5_4:57449308-57449327 | Msa0859250:intron | 65.0% | |
| GCCATGTTGGGCCTCCAAGC+TGG | - | chr5_4:57449312-57449331 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57448002 | 57450809 | 57448002 | ID=Msa0859250;Name=Msa0859250 |
| chr5_4 | mRNA | 57448002 | 57450809 | 57448002 | ID=Msa0859250-mRNA-1;Parent=Msa0859250;Name=Msa0859250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=49|1|1|1|1|1|4|247|325 |
| chr5_4 | exon | 57448002 | 57448278 | 57448002 | ID=Msa0859250-mRNA-1:exon:17515;Parent=Msa0859250-mRNA-1 |
| chr5_4 | exon | 57448898 | 57449089 | 57448898 | ID=Msa0859250-mRNA-1:exon:17516;Parent=Msa0859250-mRNA-1 |
| chr5_4 | exon | 57449313 | 57449478 | 57449313 | ID=Msa0859250-mRNA-1:exon:17517;Parent=Msa0859250-mRNA-1 |
| chr5_4 | exon | 57450171 | 57450809 | 57450171 | ID=Msa0859250-mRNA-1:exon:17518;Parent=Msa0859250-mRNA-1 |
| chr5_4 | five_prime_UTR | 57448002 | 57448050 | 57448002 | ID=Msa0859250-mRNA-1:five_prime_utr;Parent=Msa0859250-mRNA-1 |
| chr5_4 | CDS | 57448051 | 57448278 | 57448051 | ID=Msa0859250-mRNA-1:cds;Parent=Msa0859250-mRNA-1 |
| chr5_4 | CDS | 57448898 | 57449089 | 57448898 | ID=Msa0859250-mRNA-1:cds;Parent=Msa0859250-mRNA-1 |
| chr5_4 | CDS | 57449313 | 57449478 | 57449313 | ID=Msa0859250-mRNA-1:cds;Parent=Msa0859250-mRNA-1 |
| chr5_4 | CDS | 57450171 | 57450562 | 57450171 | ID=Msa0859250-mRNA-1:cds;Parent=Msa0859250-mRNA-1 |
| chr5_4 | three_prime_UTR | 57450563 | 57450809 | 57450563 | ID=Msa0859250-mRNA-1:three_prime_utr;Parent=Msa0859250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
